Multiple sequence alignment - TraesCS5D01G236000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G236000 chr5D 100.000 7709 0 0 1 7709 344685877 344693585 0.000000e+00 14236.0
1 TraesCS5D01G236000 chr5D 88.842 1192 102 20 4748 5918 430530953 430529772 0.000000e+00 1435.0
2 TraesCS5D01G236000 chr5D 82.979 94 13 3 1423 1514 241361438 241361530 1.780000e-11 82.4
3 TraesCS5D01G236000 chr5B 96.185 2595 70 10 1493 4085 407133485 407130918 0.000000e+00 4217.0
4 TraesCS5D01G236000 chr5B 92.728 1829 73 10 5918 7709 407128249 407126444 0.000000e+00 2586.0
5 TraesCS5D01G236000 chr5B 90.193 571 30 11 21 586 407195200 407194651 0.000000e+00 721.0
6 TraesCS5D01G236000 chr5B 94.808 443 14 4 937 1376 407133921 407133485 0.000000e+00 682.0
7 TraesCS5D01G236000 chr5B 86.792 371 30 4 590 942 407140107 407139738 5.610000e-106 396.0
8 TraesCS5D01G236000 chr5B 93.785 177 10 1 4069 4244 407128455 407128279 1.650000e-66 265.0
9 TraesCS5D01G236000 chr5B 76.417 441 67 30 236 657 158902567 158902989 3.650000e-48 204.0
10 TraesCS5D01G236000 chr5A 95.199 1812 64 7 5920 7709 447370120 447368310 0.000000e+00 2843.0
11 TraesCS5D01G236000 chr5A 91.122 980 56 11 939 1913 447374472 447373519 0.000000e+00 1299.0
12 TraesCS5D01G236000 chr5A 84.193 1183 138 29 4748 5918 48182947 48181802 0.000000e+00 1103.0
13 TraesCS5D01G236000 chr5A 96.529 605 21 0 3397 4001 447372068 447371464 0.000000e+00 1002.0
14 TraesCS5D01G236000 chr5A 89.833 777 61 9 1978 2746 447373520 447372754 0.000000e+00 981.0
15 TraesCS5D01G236000 chr5A 93.856 651 30 2 2748 3396 447372789 447372147 0.000000e+00 972.0
16 TraesCS5D01G236000 chr5A 83.871 930 121 18 21 942 447530259 447529351 0.000000e+00 859.0
17 TraesCS5D01G236000 chr5A 94.118 255 8 2 4013 4261 447370375 447370122 1.570000e-101 381.0
18 TraesCS5D01G236000 chr5A 82.292 96 12 5 1423 1514 311132244 311132338 2.310000e-10 78.7
19 TraesCS5D01G236000 chr3D 91.381 1195 69 15 4748 5920 435709189 435708007 0.000000e+00 1605.0
20 TraesCS5D01G236000 chr3D 92.786 499 30 5 4263 4760 47207969 47208462 0.000000e+00 717.0
21 TraesCS5D01G236000 chr3D 92.629 502 32 5 4261 4760 216461251 216460753 0.000000e+00 717.0
22 TraesCS5D01G236000 chr3D 92.972 498 23 2 4263 4760 126394928 126394443 0.000000e+00 715.0
23 TraesCS5D01G236000 chr3D 92.385 499 34 4 4264 4760 467275625 467276121 0.000000e+00 708.0
24 TraesCS5D01G236000 chr3D 89.600 375 22 5 4748 5107 47209401 47209773 1.960000e-125 460.0
25 TraesCS5D01G236000 chr4D 90.252 1190 72 13 4748 5918 11876597 11877761 0.000000e+00 1515.0
26 TraesCS5D01G236000 chr4D 92.843 503 32 4 4260 4760 75772639 75773139 0.000000e+00 726.0
27 TraesCS5D01G236000 chr2D 89.757 1191 99 11 4748 5918 553766376 553767563 0.000000e+00 1502.0
28 TraesCS5D01G236000 chr2D 88.036 1212 89 23 4748 5920 355929203 355928009 0.000000e+00 1384.0
29 TraesCS5D01G236000 chr2D 92.600 500 35 2 4261 4760 306624785 306625282 0.000000e+00 717.0
30 TraesCS5D01G236000 chr2B 89.394 1188 103 11 4753 5918 243359921 243358735 0.000000e+00 1474.0
31 TraesCS5D01G236000 chr7D 91.133 1094 77 6 4827 5901 66964625 66963533 0.000000e+00 1465.0
32 TraesCS5D01G236000 chr7D 87.753 1184 118 19 4748 5919 511938618 511937450 0.000000e+00 1358.0
33 TraesCS5D01G236000 chr7D 92.445 503 34 3 4259 4760 66965790 66965291 0.000000e+00 715.0
34 TraesCS5D01G236000 chr7D 92.200 500 36 3 4263 4760 393580842 393581340 0.000000e+00 704.0
35 TraesCS5D01G236000 chr7D 92.200 500 36 3 4261 4760 558453290 558452794 0.000000e+00 704.0
36 TraesCS5D01G236000 chr3A 88.889 1197 104 14 4753 5931 725413781 725414966 0.000000e+00 1447.0
37 TraesCS5D01G236000 chr6D 88.833 1191 86 11 4748 5918 463787967 463789130 0.000000e+00 1419.0
38 TraesCS5D01G236000 chr6D 88.643 722 52 12 4754 5469 473277647 473278344 0.000000e+00 852.0
39 TraesCS5D01G236000 chr6D 89.538 411 27 3 4748 5143 38627376 38626967 2.480000e-139 507.0
40 TraesCS5D01G236000 chr4B 87.909 1191 115 10 4748 5918 517366651 517367832 0.000000e+00 1375.0
41 TraesCS5D01G236000 chrUn 87.490 1223 93 28 4748 5930 61034590 61035792 0.000000e+00 1356.0
42 TraesCS5D01G236000 chr1D 83.736 455 51 14 5945 6378 457875686 457876138 7.200000e-110 409.0
43 TraesCS5D01G236000 chr1A 76.010 421 71 23 236 641 185074950 185075355 2.840000e-44 191.0
44 TraesCS5D01G236000 chr4A 83.333 144 22 2 411 553 123025828 123025970 1.750000e-26 132.0
45 TraesCS5D01G236000 chr2A 81.481 108 12 5 1423 1522 719282966 719282859 1.780000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G236000 chr5D 344685877 344693585 7708 False 14236.000000 14236 100.000000 1 7709 1 chr5D.!!$F2 7708
1 TraesCS5D01G236000 chr5D 430529772 430530953 1181 True 1435.000000 1435 88.842000 4748 5918 1 chr5D.!!$R1 1170
2 TraesCS5D01G236000 chr5B 407126444 407133921 7477 True 1937.500000 4217 94.376500 937 7709 4 chr5B.!!$R3 6772
3 TraesCS5D01G236000 chr5B 407194651 407195200 549 True 721.000000 721 90.193000 21 586 1 chr5B.!!$R2 565
4 TraesCS5D01G236000 chr5A 447368310 447374472 6162 True 1246.333333 2843 93.442833 939 7709 6 chr5A.!!$R3 6770
5 TraesCS5D01G236000 chr5A 48181802 48182947 1145 True 1103.000000 1103 84.193000 4748 5918 1 chr5A.!!$R1 1170
6 TraesCS5D01G236000 chr5A 447529351 447530259 908 True 859.000000 859 83.871000 21 942 1 chr5A.!!$R2 921
7 TraesCS5D01G236000 chr3D 435708007 435709189 1182 True 1605.000000 1605 91.381000 4748 5920 1 chr3D.!!$R3 1172
8 TraesCS5D01G236000 chr3D 47207969 47209773 1804 False 588.500000 717 91.193000 4263 5107 2 chr3D.!!$F2 844
9 TraesCS5D01G236000 chr4D 11876597 11877761 1164 False 1515.000000 1515 90.252000 4748 5918 1 chr4D.!!$F1 1170
10 TraesCS5D01G236000 chr4D 75772639 75773139 500 False 726.000000 726 92.843000 4260 4760 1 chr4D.!!$F2 500
11 TraesCS5D01G236000 chr2D 553766376 553767563 1187 False 1502.000000 1502 89.757000 4748 5918 1 chr2D.!!$F2 1170
12 TraesCS5D01G236000 chr2D 355928009 355929203 1194 True 1384.000000 1384 88.036000 4748 5920 1 chr2D.!!$R1 1172
13 TraesCS5D01G236000 chr2B 243358735 243359921 1186 True 1474.000000 1474 89.394000 4753 5918 1 chr2B.!!$R1 1165
14 TraesCS5D01G236000 chr7D 511937450 511938618 1168 True 1358.000000 1358 87.753000 4748 5919 1 chr7D.!!$R1 1171
15 TraesCS5D01G236000 chr7D 66963533 66965790 2257 True 1090.000000 1465 91.789000 4259 5901 2 chr7D.!!$R3 1642
16 TraesCS5D01G236000 chr3A 725413781 725414966 1185 False 1447.000000 1447 88.889000 4753 5931 1 chr3A.!!$F1 1178
17 TraesCS5D01G236000 chr6D 463787967 463789130 1163 False 1419.000000 1419 88.833000 4748 5918 1 chr6D.!!$F1 1170
18 TraesCS5D01G236000 chr6D 473277647 473278344 697 False 852.000000 852 88.643000 4754 5469 1 chr6D.!!$F2 715
19 TraesCS5D01G236000 chr4B 517366651 517367832 1181 False 1375.000000 1375 87.909000 4748 5918 1 chr4B.!!$F1 1170
20 TraesCS5D01G236000 chrUn 61034590 61035792 1202 False 1356.000000 1356 87.490000 4748 5930 1 chrUn.!!$F1 1182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 896 0.028770 ACAACGCACGGACATGTTTG 59.971 50.000 0.00 0.84 0.00 2.93 F
910 918 0.036732 TACAAAGCTGCCACCAGAGG 59.963 55.000 0.00 0.00 41.77 3.69 F
933 941 0.236449 GGCGGTTGAAACGAACGAAT 59.764 50.000 6.88 0.00 0.00 3.34 F
1257 1267 0.452184 TTTGTTTGCTTTGACGGCGA 59.548 45.000 16.62 0.00 0.00 5.54 F
2383 2520 0.701731 CCCCACAAACCCACCTATGA 59.298 55.000 0.00 0.00 0.00 2.15 F
2631 2768 2.423538 GTCTGCCACCAAATGACCATAC 59.576 50.000 0.00 0.00 0.00 2.39 F
4165 8094 1.986413 CCACACCTCCTCCTTCCAG 59.014 63.158 0.00 0.00 0.00 3.86 F
5676 10759 0.252057 CGGGAGGGTTTTGGGGAAAT 60.252 55.000 0.00 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2528 2665 0.042131 AACTATCCCCTCGACCACCA 59.958 55.000 0.00 0.0 0.00 4.17 R
2623 2760 1.206132 CACTTGCCTACGGTATGGTCA 59.794 52.381 0.00 0.0 0.00 4.02 R
2818 2955 1.225983 CATTCCCATACCGGTGCCA 59.774 57.895 19.93 0.0 0.00 4.92 R
3331 3468 5.118729 TCAAGTTTCAGACTTTGGGGTTA 57.881 39.130 0.00 0.0 46.34 2.85 R
3726 4099 2.269940 AGATACAGCTTTCCCAGTGGT 58.730 47.619 8.74 0.0 0.00 4.16 R
4576 8527 0.596600 GCGTGGTCGAACTCAAGTCA 60.597 55.000 0.33 0.0 39.71 3.41 R
5679 10762 0.251787 GCAACCTCCACCATTTCCCT 60.252 55.000 0.00 0.0 0.00 4.20 R
7572 12729 0.035439 GGAAAAGACGATGGGCCAGA 60.035 55.000 13.78 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.361977 CCTGGTCCCAAAACGCCG 61.362 66.667 0.00 0.00 0.00 6.46
18 19 2.281208 CTGGTCCCAAAACGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
19 20 2.592287 TGGTCCCAAAACGCCGAC 60.592 61.111 0.00 0.00 0.00 4.79
32 34 3.824414 ACGCCGACAAAGGAATTAAAG 57.176 42.857 0.00 0.00 0.00 1.85
87 89 2.357637 CCGGCGAATTATGGTCATGTTT 59.642 45.455 9.30 0.00 0.00 2.83
173 177 6.210078 GTGTAAGCTGATCACTATCTACACC 58.790 44.000 17.28 8.31 35.76 4.16
193 197 7.747809 ACACCCCAAATCCAATTAATATGTT 57.252 32.000 0.00 0.00 0.00 2.71
366 373 8.859517 TGAAAATTGTTAACCCTTTTCGTAAG 57.140 30.769 23.57 0.00 39.37 2.34
560 568 2.900546 GAGGGATGGTGTATGGACTAGG 59.099 54.545 0.00 0.00 0.00 3.02
561 569 2.250273 AGGGATGGTGTATGGACTAGGT 59.750 50.000 0.00 0.00 0.00 3.08
586 594 2.050934 GTCGTAGCTCGGGAAGGGT 61.051 63.158 0.00 0.00 40.32 4.34
587 595 2.050350 TCGTAGCTCGGGAAGGGTG 61.050 63.158 0.00 0.00 40.32 4.61
588 596 2.901042 GTAGCTCGGGAAGGGTGG 59.099 66.667 0.00 0.00 0.00 4.61
589 597 3.081409 TAGCTCGGGAAGGGTGGC 61.081 66.667 0.00 0.00 0.00 5.01
592 600 3.411517 CTCGGGAAGGGTGGCCAT 61.412 66.667 9.72 0.00 0.00 4.40
593 601 3.406595 CTCGGGAAGGGTGGCCATC 62.407 68.421 9.72 8.70 0.00 3.51
594 602 3.727258 CGGGAAGGGTGGCCATCA 61.727 66.667 20.00 0.00 0.00 3.07
595 603 2.770130 GGGAAGGGTGGCCATCAA 59.230 61.111 20.00 0.00 0.00 2.57
596 604 1.078347 GGGAAGGGTGGCCATCAAA 59.922 57.895 20.00 0.00 0.00 2.69
597 605 0.325577 GGGAAGGGTGGCCATCAAAT 60.326 55.000 20.00 2.17 0.00 2.32
598 606 1.114627 GGAAGGGTGGCCATCAAATC 58.885 55.000 20.00 12.14 0.00 2.17
599 607 1.114627 GAAGGGTGGCCATCAAATCC 58.885 55.000 20.00 8.99 0.00 3.01
600 608 0.413037 AAGGGTGGCCATCAAATCCA 59.587 50.000 20.00 0.00 0.00 3.41
601 609 0.032813 AGGGTGGCCATCAAATCCAG 60.033 55.000 20.00 0.00 0.00 3.86
602 610 1.044790 GGGTGGCCATCAAATCCAGG 61.045 60.000 20.00 0.00 0.00 4.45
603 611 0.324645 GGTGGCCATCAAATCCAGGT 60.325 55.000 12.38 0.00 0.00 4.00
604 612 1.560505 GTGGCCATCAAATCCAGGTT 58.439 50.000 9.72 0.00 0.00 3.50
605 613 1.205417 GTGGCCATCAAATCCAGGTTG 59.795 52.381 9.72 0.00 0.00 3.77
606 614 1.076841 TGGCCATCAAATCCAGGTTGA 59.923 47.619 0.00 0.00 39.24 3.18
607 615 2.292389 TGGCCATCAAATCCAGGTTGAT 60.292 45.455 0.00 0.25 44.63 2.57
616 624 6.962182 TCAAATCCAGGTTGATGAGATTAGT 58.038 36.000 0.00 0.00 30.08 2.24
617 625 7.405292 TCAAATCCAGGTTGATGAGATTAGTT 58.595 34.615 0.00 0.00 30.08 2.24
618 626 7.890127 TCAAATCCAGGTTGATGAGATTAGTTT 59.110 33.333 0.00 0.00 30.08 2.66
619 627 8.526147 CAAATCCAGGTTGATGAGATTAGTTTT 58.474 33.333 0.00 0.00 0.00 2.43
620 628 9.753674 AAATCCAGGTTGATGAGATTAGTTTTA 57.246 29.630 0.00 0.00 0.00 1.52
621 629 9.753674 AATCCAGGTTGATGAGATTAGTTTTAA 57.246 29.630 0.00 0.00 0.00 1.52
622 630 9.753674 ATCCAGGTTGATGAGATTAGTTTTAAA 57.246 29.630 0.00 0.00 0.00 1.52
623 631 9.581289 TCCAGGTTGATGAGATTAGTTTTAAAA 57.419 29.630 0.00 0.00 0.00 1.52
624 632 9.626045 CCAGGTTGATGAGATTAGTTTTAAAAC 57.374 33.333 21.06 21.06 39.17 2.43
647 655 9.865321 AAACTATTGATCATTCACTTGAAATGG 57.135 29.630 0.00 0.00 37.61 3.16
648 656 7.486647 ACTATTGATCATTCACTTGAAATGGC 58.513 34.615 0.00 0.00 37.61 4.40
649 657 5.725325 TTGATCATTCACTTGAAATGGCA 57.275 34.783 0.00 0.00 37.61 4.92
650 658 5.925506 TGATCATTCACTTGAAATGGCAT 57.074 34.783 0.00 0.00 37.61 4.40
651 659 5.656480 TGATCATTCACTTGAAATGGCATG 58.344 37.500 0.00 0.00 37.61 4.06
652 660 4.459390 TCATTCACTTGAAATGGCATGG 57.541 40.909 0.00 0.00 37.61 3.66
653 661 3.833650 TCATTCACTTGAAATGGCATGGT 59.166 39.130 0.00 0.00 37.61 3.55
654 662 4.283978 TCATTCACTTGAAATGGCATGGTT 59.716 37.500 0.00 0.00 37.61 3.67
655 663 3.940209 TCACTTGAAATGGCATGGTTC 57.060 42.857 0.00 2.54 0.00 3.62
656 664 3.229293 TCACTTGAAATGGCATGGTTCA 58.771 40.909 9.89 9.89 0.00 3.18
657 665 3.640498 TCACTTGAAATGGCATGGTTCAA 59.360 39.130 20.41 20.41 38.57 2.69
658 666 4.283978 TCACTTGAAATGGCATGGTTCAAT 59.716 37.500 21.40 12.52 39.74 2.57
659 667 4.390603 CACTTGAAATGGCATGGTTCAATG 59.609 41.667 21.40 17.71 39.74 2.82
660 668 3.613494 TGAAATGGCATGGTTCAATGG 57.387 42.857 11.23 0.00 0.00 3.16
663 671 2.495866 GGCATGGTTCAATGGCCG 59.504 61.111 0.00 0.00 44.98 6.13
664 672 2.495866 GCATGGTTCAATGGCCGG 59.504 61.111 0.00 0.00 0.00 6.13
665 673 2.350458 GCATGGTTCAATGGCCGGT 61.350 57.895 1.90 0.00 0.00 5.28
666 674 1.512230 CATGGTTCAATGGCCGGTG 59.488 57.895 1.90 0.00 0.00 4.94
667 675 1.076549 ATGGTTCAATGGCCGGTGT 59.923 52.632 1.90 0.00 0.00 4.16
668 676 1.250154 ATGGTTCAATGGCCGGTGTG 61.250 55.000 1.90 0.00 0.00 3.82
669 677 2.258286 GTTCAATGGCCGGTGTGC 59.742 61.111 1.90 0.00 0.00 4.57
670 678 2.203408 TTCAATGGCCGGTGTGCA 60.203 55.556 1.90 0.00 0.00 4.57
671 679 1.606025 TTCAATGGCCGGTGTGCAT 60.606 52.632 1.90 0.00 0.00 3.96
672 680 1.875420 TTCAATGGCCGGTGTGCATG 61.875 55.000 1.90 0.00 0.00 4.06
673 681 3.762247 AATGGCCGGTGTGCATGC 61.762 61.111 11.82 11.82 0.00 4.06
687 695 2.771435 CATGCGGTGCTTGAGATCA 58.229 52.632 0.00 0.00 36.06 2.92
688 696 1.306148 CATGCGGTGCTTGAGATCAT 58.694 50.000 0.00 0.00 36.06 2.45
689 697 1.263484 CATGCGGTGCTTGAGATCATC 59.737 52.381 0.00 0.00 36.06 2.92
690 698 0.249955 TGCGGTGCTTGAGATCATCA 59.750 50.000 0.00 0.00 35.62 3.07
691 699 1.134310 TGCGGTGCTTGAGATCATCAT 60.134 47.619 0.00 0.00 37.89 2.45
692 700 1.530293 GCGGTGCTTGAGATCATCATC 59.470 52.381 0.00 0.00 37.89 2.92
693 701 2.806019 GCGGTGCTTGAGATCATCATCT 60.806 50.000 0.00 0.00 42.59 2.90
694 702 3.464907 CGGTGCTTGAGATCATCATCTT 58.535 45.455 0.00 0.00 39.71 2.40
695 703 3.875727 CGGTGCTTGAGATCATCATCTTT 59.124 43.478 0.00 0.00 39.71 2.52
696 704 4.260661 CGGTGCTTGAGATCATCATCTTTG 60.261 45.833 0.00 0.00 39.71 2.77
697 705 4.036498 GGTGCTTGAGATCATCATCTTTGG 59.964 45.833 0.00 0.00 39.71 3.28
698 706 4.036498 GTGCTTGAGATCATCATCTTTGGG 59.964 45.833 0.00 0.00 39.71 4.12
699 707 4.080186 TGCTTGAGATCATCATCTTTGGGA 60.080 41.667 0.00 0.00 39.71 4.37
700 708 5.071370 GCTTGAGATCATCATCTTTGGGAT 58.929 41.667 0.00 0.00 39.71 3.85
701 709 5.535406 GCTTGAGATCATCATCTTTGGGATT 59.465 40.000 0.00 0.00 39.71 3.01
702 710 6.515200 GCTTGAGATCATCATCTTTGGGATTG 60.515 42.308 0.00 0.00 39.71 2.67
703 711 6.256643 TGAGATCATCATCTTTGGGATTGA 57.743 37.500 0.00 0.00 39.71 2.57
704 712 6.849151 TGAGATCATCATCTTTGGGATTGAT 58.151 36.000 0.00 0.00 39.71 2.57
705 713 6.940867 TGAGATCATCATCTTTGGGATTGATC 59.059 38.462 0.00 10.11 42.86 2.92
706 714 6.849151 AGATCATCATCTTTGGGATTGATCA 58.151 36.000 16.10 0.00 43.85 2.92
707 715 7.295340 AGATCATCATCTTTGGGATTGATCAA 58.705 34.615 11.26 11.26 43.85 2.57
708 716 7.950684 AGATCATCATCTTTGGGATTGATCAAT 59.049 33.333 20.85 20.85 43.85 2.57
709 717 7.907841 TCATCATCTTTGGGATTGATCAATT 57.092 32.000 21.57 6.27 31.27 2.32
710 718 8.999905 TCATCATCTTTGGGATTGATCAATTA 57.000 30.769 21.57 9.22 31.27 1.40
711 719 9.596308 TCATCATCTTTGGGATTGATCAATTAT 57.404 29.630 21.57 0.57 31.27 1.28
712 720 9.639601 CATCATCTTTGGGATTGATCAATTATG 57.360 33.333 21.57 14.90 31.27 1.90
713 721 8.185506 TCATCTTTGGGATTGATCAATTATGG 57.814 34.615 21.57 10.46 31.27 2.74
714 722 8.005976 TCATCTTTGGGATTGATCAATTATGGA 58.994 33.333 21.57 14.59 31.27 3.41
715 723 7.587037 TCTTTGGGATTGATCAATTATGGAC 57.413 36.000 21.57 8.04 0.00 4.02
716 724 6.262944 TCTTTGGGATTGATCAATTATGGACG 59.737 38.462 21.57 8.72 0.00 4.79
717 725 5.047566 TGGGATTGATCAATTATGGACGT 57.952 39.130 21.57 0.00 0.00 4.34
718 726 6.181206 TGGGATTGATCAATTATGGACGTA 57.819 37.500 21.57 0.00 0.00 3.57
719 727 6.778821 TGGGATTGATCAATTATGGACGTAT 58.221 36.000 21.57 0.00 0.00 3.06
720 728 7.230747 TGGGATTGATCAATTATGGACGTATT 58.769 34.615 21.57 0.00 0.00 1.89
721 729 7.723616 TGGGATTGATCAATTATGGACGTATTT 59.276 33.333 21.57 0.00 0.00 1.40
722 730 8.237267 GGGATTGATCAATTATGGACGTATTTC 58.763 37.037 21.57 5.04 0.00 2.17
723 731 7.957484 GGATTGATCAATTATGGACGTATTTCG 59.043 37.037 21.57 0.00 46.00 3.46
724 732 8.601845 ATTGATCAATTATGGACGTATTTCGA 57.398 30.769 15.36 0.00 42.86 3.71
725 733 8.426881 TTGATCAATTATGGACGTATTTCGAA 57.573 30.769 3.38 0.00 42.86 3.71
726 734 7.847487 TGATCAATTATGGACGTATTTCGAAC 58.153 34.615 0.00 0.00 42.86 3.95
727 735 7.492994 TGATCAATTATGGACGTATTTCGAACA 59.507 33.333 0.00 0.00 42.86 3.18
728 736 6.996106 TCAATTATGGACGTATTTCGAACAC 58.004 36.000 0.00 0.00 42.86 3.32
729 737 5.978934 ATTATGGACGTATTTCGAACACC 57.021 39.130 0.00 0.00 42.86 4.16
730 738 1.700523 TGGACGTATTTCGAACACCG 58.299 50.000 0.00 2.48 42.86 4.94
731 739 1.000385 TGGACGTATTTCGAACACCGT 60.000 47.619 13.09 13.09 42.86 4.83
732 740 2.227626 TGGACGTATTTCGAACACCGTA 59.772 45.455 13.17 0.00 42.86 4.02
733 741 3.241701 GGACGTATTTCGAACACCGTAA 58.758 45.455 13.17 0.00 42.86 3.18
734 742 3.859386 GGACGTATTTCGAACACCGTAAT 59.141 43.478 13.17 0.00 42.86 1.89
735 743 4.027377 GGACGTATTTCGAACACCGTAATC 60.027 45.833 13.17 4.15 42.86 1.75
736 744 3.543494 ACGTATTTCGAACACCGTAATCG 59.457 43.478 11.95 4.54 42.86 3.34
737 745 3.543494 CGTATTTCGAACACCGTAATCGT 59.457 43.478 0.00 0.00 42.86 3.73
738 746 3.984018 ATTTCGAACACCGTAATCGTG 57.016 42.857 0.00 0.00 33.90 4.35
739 747 1.700523 TTCGAACACCGTAATCGTGG 58.299 50.000 0.00 0.00 39.75 4.94
740 748 0.733566 TCGAACACCGTAATCGTGGC 60.734 55.000 5.38 0.00 39.75 5.01
741 749 1.689352 CGAACACCGTAATCGTGGCC 61.689 60.000 0.00 0.00 35.01 5.36
742 750 0.671163 GAACACCGTAATCGTGGCCA 60.671 55.000 0.00 0.00 35.01 5.36
743 751 0.672401 AACACCGTAATCGTGGCCAG 60.672 55.000 5.11 0.00 35.01 4.85
744 752 1.079405 CACCGTAATCGTGGCCAGT 60.079 57.895 5.11 0.00 35.01 4.00
745 753 1.079405 ACCGTAATCGTGGCCAGTG 60.079 57.895 5.11 0.86 35.01 3.66
746 754 1.216977 CCGTAATCGTGGCCAGTGA 59.783 57.895 5.11 8.13 35.01 3.41
747 755 0.390603 CCGTAATCGTGGCCAGTGAA 60.391 55.000 5.11 0.00 35.01 3.18
748 756 0.999406 CGTAATCGTGGCCAGTGAAG 59.001 55.000 5.11 0.00 0.00 3.02
749 757 1.369625 GTAATCGTGGCCAGTGAAGG 58.630 55.000 5.11 0.00 0.00 3.46
757 765 1.581447 GCCAGTGAAGGCGAAAAGG 59.419 57.895 0.00 0.00 46.12 3.11
758 766 0.889186 GCCAGTGAAGGCGAAAAGGA 60.889 55.000 0.00 0.00 46.12 3.36
759 767 1.160137 CCAGTGAAGGCGAAAAGGAG 58.840 55.000 0.00 0.00 0.00 3.69
760 768 1.160137 CAGTGAAGGCGAAAAGGAGG 58.840 55.000 0.00 0.00 0.00 4.30
761 769 1.056660 AGTGAAGGCGAAAAGGAGGA 58.943 50.000 0.00 0.00 0.00 3.71
762 770 1.630878 AGTGAAGGCGAAAAGGAGGAT 59.369 47.619 0.00 0.00 0.00 3.24
763 771 2.838202 AGTGAAGGCGAAAAGGAGGATA 59.162 45.455 0.00 0.00 0.00 2.59
764 772 3.263425 AGTGAAGGCGAAAAGGAGGATAA 59.737 43.478 0.00 0.00 0.00 1.75
765 773 4.007659 GTGAAGGCGAAAAGGAGGATAAA 58.992 43.478 0.00 0.00 0.00 1.40
766 774 4.007659 TGAAGGCGAAAAGGAGGATAAAC 58.992 43.478 0.00 0.00 0.00 2.01
767 775 2.629051 AGGCGAAAAGGAGGATAAACG 58.371 47.619 0.00 0.00 0.00 3.60
768 776 1.669265 GGCGAAAAGGAGGATAAACGG 59.331 52.381 0.00 0.00 0.00 4.44
769 777 1.063616 GCGAAAAGGAGGATAAACGGC 59.936 52.381 0.00 0.00 0.00 5.68
770 778 1.326548 CGAAAAGGAGGATAAACGGCG 59.673 52.381 4.80 4.80 0.00 6.46
771 779 2.624636 GAAAAGGAGGATAAACGGCGA 58.375 47.619 16.62 0.00 0.00 5.54
772 780 2.019948 AAAGGAGGATAAACGGCGAC 57.980 50.000 16.62 0.00 0.00 5.19
773 781 0.899720 AAGGAGGATAAACGGCGACA 59.100 50.000 16.62 0.00 0.00 4.35
774 782 1.120530 AGGAGGATAAACGGCGACAT 58.879 50.000 16.62 2.68 0.00 3.06
775 783 2.313317 AGGAGGATAAACGGCGACATA 58.687 47.619 16.62 3.47 0.00 2.29
776 784 2.296471 AGGAGGATAAACGGCGACATAG 59.704 50.000 16.62 0.00 0.00 2.23
777 785 2.295349 GGAGGATAAACGGCGACATAGA 59.705 50.000 16.62 0.00 0.00 1.98
778 786 3.056749 GGAGGATAAACGGCGACATAGAT 60.057 47.826 16.62 0.00 0.00 1.98
779 787 3.914312 AGGATAAACGGCGACATAGATG 58.086 45.455 16.62 0.00 0.00 2.90
780 788 3.572682 AGGATAAACGGCGACATAGATGA 59.427 43.478 16.62 0.00 0.00 2.92
781 789 4.220821 AGGATAAACGGCGACATAGATGAT 59.779 41.667 16.62 0.00 0.00 2.45
782 790 4.327357 GGATAAACGGCGACATAGATGATG 59.673 45.833 16.62 0.00 41.79 3.07
783 791 1.502231 AACGGCGACATAGATGATGC 58.498 50.000 16.62 0.00 39.39 3.91
784 792 0.389025 ACGGCGACATAGATGATGCA 59.611 50.000 16.62 0.00 39.39 3.96
785 793 1.001293 ACGGCGACATAGATGATGCAT 59.999 47.619 16.62 0.00 39.39 3.96
786 794 2.071540 CGGCGACATAGATGATGCATT 58.928 47.619 0.00 0.00 39.39 3.56
787 795 2.159747 CGGCGACATAGATGATGCATTG 60.160 50.000 0.00 0.00 39.39 2.82
788 796 2.810274 GGCGACATAGATGATGCATTGT 59.190 45.455 0.00 0.00 39.39 2.71
789 797 3.364664 GGCGACATAGATGATGCATTGTG 60.365 47.826 0.00 0.00 39.39 3.33
790 798 3.249320 GCGACATAGATGATGCATTGTGT 59.751 43.478 0.00 0.00 39.39 3.72
791 799 4.260907 GCGACATAGATGATGCATTGTGTT 60.261 41.667 0.00 0.00 39.39 3.32
792 800 5.202640 CGACATAGATGATGCATTGTGTTG 58.797 41.667 0.00 0.00 39.39 3.33
793 801 5.006941 CGACATAGATGATGCATTGTGTTGA 59.993 40.000 0.00 0.00 39.39 3.18
794 802 6.457257 CGACATAGATGATGCATTGTGTTGAA 60.457 38.462 0.00 0.00 39.39 2.69
795 803 7.160547 ACATAGATGATGCATTGTGTTGAAA 57.839 32.000 0.00 0.00 39.39 2.69
796 804 7.778083 ACATAGATGATGCATTGTGTTGAAAT 58.222 30.769 0.00 0.00 39.39 2.17
797 805 8.905850 ACATAGATGATGCATTGTGTTGAAATA 58.094 29.630 0.00 0.00 39.39 1.40
798 806 9.394477 CATAGATGATGCATTGTGTTGAAATAG 57.606 33.333 0.00 0.00 0.00 1.73
799 807 7.634671 AGATGATGCATTGTGTTGAAATAGA 57.365 32.000 0.00 0.00 0.00 1.98
800 808 7.478322 AGATGATGCATTGTGTTGAAATAGAC 58.522 34.615 0.00 0.00 0.00 2.59
801 809 6.572167 TGATGCATTGTGTTGAAATAGACA 57.428 33.333 0.00 0.00 0.00 3.41
802 810 6.979465 TGATGCATTGTGTTGAAATAGACAA 58.021 32.000 0.00 0.00 33.09 3.18
803 811 7.604549 TGATGCATTGTGTTGAAATAGACAAT 58.395 30.769 0.00 0.00 39.13 2.71
807 815 7.571089 CATTGTGTTGAAATAGACAATGTGG 57.429 36.000 14.74 0.00 45.50 4.17
808 816 6.951062 TTGTGTTGAAATAGACAATGTGGA 57.049 33.333 0.00 0.00 0.00 4.02
809 817 6.312399 TGTGTTGAAATAGACAATGTGGAC 57.688 37.500 0.00 0.00 0.00 4.02
810 818 5.240623 TGTGTTGAAATAGACAATGTGGACC 59.759 40.000 0.00 0.00 0.00 4.46
811 819 5.473504 GTGTTGAAATAGACAATGTGGACCT 59.526 40.000 0.00 0.00 0.00 3.85
812 820 5.473162 TGTTGAAATAGACAATGTGGACCTG 59.527 40.000 0.00 0.00 0.00 4.00
813 821 5.241403 TGAAATAGACAATGTGGACCTGT 57.759 39.130 0.00 0.00 0.00 4.00
814 822 5.003160 TGAAATAGACAATGTGGACCTGTG 58.997 41.667 0.00 0.00 0.00 3.66
815 823 3.634397 ATAGACAATGTGGACCTGTGG 57.366 47.619 0.00 0.00 0.00 4.17
816 824 1.434188 AGACAATGTGGACCTGTGGA 58.566 50.000 0.00 0.00 0.00 4.02
817 825 1.349026 AGACAATGTGGACCTGTGGAG 59.651 52.381 0.00 0.00 0.00 3.86
818 826 1.347707 GACAATGTGGACCTGTGGAGA 59.652 52.381 0.00 0.00 0.00 3.71
819 827 1.988107 ACAATGTGGACCTGTGGAGAT 59.012 47.619 0.00 0.00 0.00 2.75
820 828 2.290514 ACAATGTGGACCTGTGGAGATG 60.291 50.000 0.00 0.00 0.00 2.90
821 829 1.661463 ATGTGGACCTGTGGAGATGT 58.339 50.000 0.00 0.00 0.00 3.06
822 830 1.434188 TGTGGACCTGTGGAGATGTT 58.566 50.000 0.00 0.00 0.00 2.71
823 831 1.774254 TGTGGACCTGTGGAGATGTTT 59.226 47.619 0.00 0.00 0.00 2.83
824 832 2.174639 TGTGGACCTGTGGAGATGTTTT 59.825 45.455 0.00 0.00 0.00 2.43
825 833 3.222603 GTGGACCTGTGGAGATGTTTTT 58.777 45.455 0.00 0.00 0.00 1.94
826 834 4.141367 TGTGGACCTGTGGAGATGTTTTTA 60.141 41.667 0.00 0.00 0.00 1.52
827 835 4.455877 GTGGACCTGTGGAGATGTTTTTAG 59.544 45.833 0.00 0.00 0.00 1.85
828 836 4.010349 GGACCTGTGGAGATGTTTTTAGG 58.990 47.826 0.00 0.00 0.00 2.69
829 837 3.421844 ACCTGTGGAGATGTTTTTAGGC 58.578 45.455 0.00 0.00 0.00 3.93
830 838 2.420022 CCTGTGGAGATGTTTTTAGGCG 59.580 50.000 0.00 0.00 0.00 5.52
831 839 3.074412 CTGTGGAGATGTTTTTAGGCGT 58.926 45.455 0.00 0.00 0.00 5.68
832 840 2.811431 TGTGGAGATGTTTTTAGGCGTG 59.189 45.455 0.00 0.00 0.00 5.34
833 841 1.810151 TGGAGATGTTTTTAGGCGTGC 59.190 47.619 0.00 0.00 0.00 5.34
834 842 2.084546 GGAGATGTTTTTAGGCGTGCT 58.915 47.619 0.00 0.00 0.00 4.40
835 843 2.488153 GGAGATGTTTTTAGGCGTGCTT 59.512 45.455 0.00 0.00 0.00 3.91
836 844 3.687698 GGAGATGTTTTTAGGCGTGCTTA 59.312 43.478 0.00 0.00 0.00 3.09
837 845 4.335594 GGAGATGTTTTTAGGCGTGCTTAT 59.664 41.667 0.00 0.00 0.00 1.73
838 846 5.163652 GGAGATGTTTTTAGGCGTGCTTATT 60.164 40.000 0.00 0.00 0.00 1.40
839 847 6.037830 GGAGATGTTTTTAGGCGTGCTTATTA 59.962 38.462 0.00 0.00 0.00 0.98
840 848 7.255139 GGAGATGTTTTTAGGCGTGCTTATTAT 60.255 37.037 0.00 0.00 0.00 1.28
841 849 7.417612 AGATGTTTTTAGGCGTGCTTATTATG 58.582 34.615 0.00 0.00 0.00 1.90
842 850 5.336744 TGTTTTTAGGCGTGCTTATTATGC 58.663 37.500 0.00 0.00 0.00 3.14
843 851 5.124776 TGTTTTTAGGCGTGCTTATTATGCT 59.875 36.000 3.56 0.00 0.00 3.79
844 852 6.316640 TGTTTTTAGGCGTGCTTATTATGCTA 59.683 34.615 3.56 0.00 0.00 3.49
845 853 6.539649 TTTTAGGCGTGCTTATTATGCTAG 57.460 37.500 3.56 0.00 0.00 3.42
846 854 3.045601 AGGCGTGCTTATTATGCTAGG 57.954 47.619 3.56 0.00 0.00 3.02
847 855 2.632996 AGGCGTGCTTATTATGCTAGGA 59.367 45.455 3.56 0.00 0.00 2.94
848 856 2.996621 GGCGTGCTTATTATGCTAGGAG 59.003 50.000 3.56 0.00 0.00 3.69
849 857 3.555168 GGCGTGCTTATTATGCTAGGAGT 60.555 47.826 3.56 0.00 0.00 3.85
850 858 4.058817 GCGTGCTTATTATGCTAGGAGTT 58.941 43.478 3.56 0.00 0.00 3.01
851 859 4.511826 GCGTGCTTATTATGCTAGGAGTTT 59.488 41.667 3.56 0.00 0.00 2.66
852 860 5.559035 GCGTGCTTATTATGCTAGGAGTTTG 60.559 44.000 3.56 0.00 0.00 2.93
853 861 5.523916 CGTGCTTATTATGCTAGGAGTTTGT 59.476 40.000 3.56 0.00 0.00 2.83
854 862 6.700081 CGTGCTTATTATGCTAGGAGTTTGTA 59.300 38.462 3.56 0.00 0.00 2.41
855 863 7.385205 CGTGCTTATTATGCTAGGAGTTTGTAT 59.615 37.037 3.56 0.00 0.00 2.29
856 864 9.057089 GTGCTTATTATGCTAGGAGTTTGTATT 57.943 33.333 3.56 0.00 0.00 1.89
857 865 9.627123 TGCTTATTATGCTAGGAGTTTGTATTT 57.373 29.630 3.56 0.00 0.00 1.40
880 888 3.965292 TTTTTCATTACAACGCACGGA 57.035 38.095 0.00 0.00 0.00 4.69
881 889 2.953640 TTTCATTACAACGCACGGAC 57.046 45.000 0.00 0.00 0.00 4.79
882 890 1.867166 TTCATTACAACGCACGGACA 58.133 45.000 0.00 0.00 0.00 4.02
883 891 2.087501 TCATTACAACGCACGGACAT 57.912 45.000 0.00 0.00 0.00 3.06
884 892 1.729517 TCATTACAACGCACGGACATG 59.270 47.619 0.00 0.00 0.00 3.21
885 893 1.463056 CATTACAACGCACGGACATGT 59.537 47.619 0.00 0.00 0.00 3.21
886 894 1.584175 TTACAACGCACGGACATGTT 58.416 45.000 0.00 0.00 0.00 2.71
887 895 1.584175 TACAACGCACGGACATGTTT 58.416 45.000 0.00 0.00 0.00 2.83
888 896 0.028770 ACAACGCACGGACATGTTTG 59.971 50.000 0.00 0.84 0.00 2.93
889 897 1.008995 AACGCACGGACATGTTTGC 60.009 52.632 14.78 14.78 0.00 3.68
890 898 1.719725 AACGCACGGACATGTTTGCA 61.720 50.000 21.15 0.00 34.49 4.08
891 899 1.209898 CGCACGGACATGTTTGCAT 59.790 52.632 21.15 0.00 34.49 3.96
892 900 0.445829 CGCACGGACATGTTTGCATA 59.554 50.000 21.15 0.00 34.49 3.14
893 901 1.790123 CGCACGGACATGTTTGCATAC 60.790 52.381 21.15 0.00 34.49 2.39
894 902 1.198867 GCACGGACATGTTTGCATACA 59.801 47.619 12.50 12.50 34.97 2.29
895 903 2.351253 GCACGGACATGTTTGCATACAA 60.351 45.455 14.07 0.00 34.97 2.41
896 904 3.855154 GCACGGACATGTTTGCATACAAA 60.855 43.478 14.07 0.00 43.45 2.83
897 905 3.913763 CACGGACATGTTTGCATACAAAG 59.086 43.478 14.07 11.81 46.17 2.77
898 906 2.916716 CGGACATGTTTGCATACAAAGC 59.083 45.455 14.07 6.16 46.17 3.51
899 907 3.366273 CGGACATGTTTGCATACAAAGCT 60.366 43.478 14.07 0.00 46.17 3.74
900 908 3.922240 GGACATGTTTGCATACAAAGCTG 59.078 43.478 14.07 10.05 46.17 4.24
901 909 3.319755 ACATGTTTGCATACAAAGCTGC 58.680 40.909 14.07 0.00 46.17 5.25
902 910 2.437200 TGTTTGCATACAAAGCTGCC 57.563 45.000 7.58 0.00 46.17 4.85
903 911 1.685517 TGTTTGCATACAAAGCTGCCA 59.314 42.857 7.58 0.00 46.17 4.92
904 912 2.061028 GTTTGCATACAAAGCTGCCAC 58.939 47.619 2.09 0.00 46.17 5.01
905 913 0.602562 TTGCATACAAAGCTGCCACC 59.397 50.000 0.00 0.00 37.59 4.61
906 914 0.539207 TGCATACAAAGCTGCCACCA 60.539 50.000 0.00 0.00 37.59 4.17
907 915 0.171903 GCATACAAAGCTGCCACCAG 59.828 55.000 0.00 0.00 42.13 4.00
908 916 1.825090 CATACAAAGCTGCCACCAGA 58.175 50.000 0.00 0.00 41.77 3.86
909 917 1.741706 CATACAAAGCTGCCACCAGAG 59.258 52.381 0.00 0.00 41.77 3.35
910 918 0.036732 TACAAAGCTGCCACCAGAGG 59.963 55.000 0.00 0.00 41.77 3.69
911 919 1.975407 CAAAGCTGCCACCAGAGGG 60.975 63.158 0.00 0.00 41.77 4.30
928 936 3.652000 GCCGGCGGTTGAAACGAA 61.652 61.111 28.82 0.00 0.00 3.85
929 937 2.250190 CCGGCGGTTGAAACGAAC 59.750 61.111 19.97 0.00 0.00 3.95
930 938 2.127906 CGGCGGTTGAAACGAACG 60.128 61.111 6.88 6.26 0.00 3.95
931 939 2.587679 CGGCGGTTGAAACGAACGA 61.588 57.895 6.88 0.00 36.06 3.85
932 940 1.642753 GGCGGTTGAAACGAACGAA 59.357 52.632 6.88 0.00 0.00 3.85
933 941 0.236449 GGCGGTTGAAACGAACGAAT 59.764 50.000 6.88 0.00 0.00 3.34
934 942 1.314581 GCGGTTGAAACGAACGAATG 58.685 50.000 6.88 0.00 0.00 2.67
935 943 1.314581 CGGTTGAAACGAACGAATGC 58.685 50.000 0.00 0.00 0.00 3.56
936 944 1.333347 CGGTTGAAACGAACGAATGCA 60.333 47.619 0.00 0.00 0.00 3.96
937 945 2.722071 GGTTGAAACGAACGAATGCAA 58.278 42.857 0.14 0.00 0.00 4.08
993 1001 3.118334 CCATCAAGATTGTCCAGAGAGCT 60.118 47.826 0.00 0.00 0.00 4.09
1149 1159 0.757512 GGTAATTCCGAGTCTCCCCC 59.242 60.000 0.00 0.00 0.00 5.40
1150 1160 1.691801 GGTAATTCCGAGTCTCCCCCT 60.692 57.143 0.00 0.00 0.00 4.79
1257 1267 0.452184 TTTGTTTGCTTTGACGGCGA 59.548 45.000 16.62 0.00 0.00 5.54
1347 1358 1.462670 CTTCTTCTTTCTCACGGCAGC 59.537 52.381 0.00 0.00 0.00 5.25
1376 1488 1.558294 TCTTGGCATCTGCTGATCTGT 59.442 47.619 2.65 0.00 41.70 3.41
1377 1489 2.026542 TCTTGGCATCTGCTGATCTGTT 60.027 45.455 2.65 0.00 41.70 3.16
1378 1490 2.502142 TGGCATCTGCTGATCTGTTT 57.498 45.000 2.65 0.00 41.70 2.83
1379 1491 2.089201 TGGCATCTGCTGATCTGTTTG 58.911 47.619 2.65 0.00 41.70 2.93
1380 1492 1.404391 GGCATCTGCTGATCTGTTTGG 59.596 52.381 2.65 0.00 41.70 3.28
1381 1493 2.089980 GCATCTGCTGATCTGTTTGGT 58.910 47.619 2.65 0.00 38.21 3.67
1382 1494 2.490903 GCATCTGCTGATCTGTTTGGTT 59.509 45.455 2.65 0.00 38.21 3.67
1383 1495 3.427233 GCATCTGCTGATCTGTTTGGTTC 60.427 47.826 2.65 0.00 38.21 3.62
1384 1496 2.783135 TCTGCTGATCTGTTTGGTTCC 58.217 47.619 1.27 0.00 0.00 3.62
1385 1497 2.106338 TCTGCTGATCTGTTTGGTTCCA 59.894 45.455 1.27 0.00 0.00 3.53
1386 1498 2.227388 CTGCTGATCTGTTTGGTTCCAC 59.773 50.000 1.27 0.00 0.00 4.02
1387 1499 1.541588 GCTGATCTGTTTGGTTCCACC 59.458 52.381 1.27 0.00 39.22 4.61
1395 1507 2.119391 TGGTTCCACCATTGCCCC 59.881 61.111 0.00 0.00 44.79 5.80
1396 1508 2.683572 GGTTCCACCATTGCCCCC 60.684 66.667 0.00 0.00 38.42 5.40
1415 1527 5.713792 CCCCCTCTTTCTTTCTTTCTTTC 57.286 43.478 0.00 0.00 0.00 2.62
1416 1528 5.389520 CCCCCTCTTTCTTTCTTTCTTTCT 58.610 41.667 0.00 0.00 0.00 2.52
1417 1529 5.835819 CCCCCTCTTTCTTTCTTTCTTTCTT 59.164 40.000 0.00 0.00 0.00 2.52
1418 1530 6.325028 CCCCCTCTTTCTTTCTTTCTTTCTTT 59.675 38.462 0.00 0.00 0.00 2.52
1419 1531 7.429633 CCCCTCTTTCTTTCTTTCTTTCTTTC 58.570 38.462 0.00 0.00 0.00 2.62
1420 1532 7.286546 CCCCTCTTTCTTTCTTTCTTTCTTTCT 59.713 37.037 0.00 0.00 0.00 2.52
1421 1533 8.690884 CCCTCTTTCTTTCTTTCTTTCTTTCTT 58.309 33.333 0.00 0.00 0.00 2.52
1448 1560 9.846248 TCTTTCTTTCTTTCTTTCTTTGTGAAG 57.154 29.630 0.00 0.00 35.89 3.02
1449 1561 8.986477 TTTCTTTCTTTCTTTCTTTGTGAAGG 57.014 30.769 0.00 0.00 35.89 3.46
1450 1562 7.938140 TCTTTCTTTCTTTCTTTGTGAAGGA 57.062 32.000 0.00 0.00 38.71 3.36
1451 1563 8.525290 TCTTTCTTTCTTTCTTTGTGAAGGAT 57.475 30.769 0.00 0.00 39.89 3.24
1452 1564 8.624776 TCTTTCTTTCTTTCTTTGTGAAGGATC 58.375 33.333 0.00 0.00 39.89 3.36
1453 1565 8.525290 TTTCTTTCTTTCTTTGTGAAGGATCT 57.475 30.769 0.00 0.00 39.89 2.75
1454 1566 7.502120 TCTTTCTTTCTTTGTGAAGGATCTG 57.498 36.000 0.00 0.00 39.89 2.90
1455 1567 5.695851 TTCTTTCTTTGTGAAGGATCTGC 57.304 39.130 0.00 0.00 39.89 4.26
1456 1568 4.978099 TCTTTCTTTGTGAAGGATCTGCT 58.022 39.130 0.00 0.00 36.12 4.24
1457 1569 5.380043 TCTTTCTTTGTGAAGGATCTGCTT 58.620 37.500 0.00 0.00 36.12 3.91
1458 1570 6.533730 TCTTTCTTTGTGAAGGATCTGCTTA 58.466 36.000 0.00 0.00 36.12 3.09
1459 1571 7.170965 TCTTTCTTTGTGAAGGATCTGCTTAT 58.829 34.615 0.00 0.00 36.12 1.73
1460 1572 6.992063 TTCTTTGTGAAGGATCTGCTTATC 57.008 37.500 0.00 0.00 33.56 1.75
1461 1573 6.305272 TCTTTGTGAAGGATCTGCTTATCT 57.695 37.500 0.00 0.00 33.56 1.98
1462 1574 7.423844 TCTTTGTGAAGGATCTGCTTATCTA 57.576 36.000 0.00 0.00 33.56 1.98
1463 1575 7.495901 TCTTTGTGAAGGATCTGCTTATCTAG 58.504 38.462 0.00 0.00 33.56 2.43
1464 1576 7.900094 TCTTTGTGAAGGATCTGCTTATCTAGC 60.900 40.741 0.00 0.00 40.62 3.42
1523 1635 2.724977 TGGTTAAGCAGAGACGAGTG 57.275 50.000 2.54 0.00 0.00 3.51
1524 1636 1.961394 TGGTTAAGCAGAGACGAGTGT 59.039 47.619 2.54 0.00 0.00 3.55
1705 1817 4.445452 AAAGTGGACATGCAATCACATC 57.555 40.909 12.33 0.00 33.01 3.06
1721 1833 3.009473 TCACATCAGCTTAGCTTCCCTTT 59.991 43.478 3.00 0.00 36.40 3.11
1726 1838 3.006247 CAGCTTAGCTTCCCTTTGACTC 58.994 50.000 3.00 0.00 36.40 3.36
1780 1892 7.829211 AGCTTAGCTTGAGGATTACATAACAAA 59.171 33.333 0.00 0.00 33.89 2.83
1786 1898 7.702348 GCTTGAGGATTACATAACAAAACCATC 59.298 37.037 0.00 0.00 0.00 3.51
1787 1899 8.877864 TTGAGGATTACATAACAAAACCATCT 57.122 30.769 0.00 0.00 0.00 2.90
1800 1912 3.417069 AACCATCTTCGTTGACCATGA 57.583 42.857 0.00 0.00 0.00 3.07
1803 1915 3.941483 ACCATCTTCGTTGACCATGATTC 59.059 43.478 0.00 0.00 0.00 2.52
1829 1941 1.672881 GCATCTGAGATGGGTTTTCCG 59.327 52.381 22.69 0.00 41.82 4.30
1841 1953 3.181442 TGGGTTTTCCGTGGTTATTGAGA 60.181 43.478 0.00 0.00 41.82 3.27
1908 2023 6.934083 TGCAAATACATGAGACAGAGTTACAA 59.066 34.615 0.00 0.00 0.00 2.41
1975 2090 1.629043 TCTGAAGTAGTCCTGCGGTT 58.371 50.000 0.00 0.00 0.00 4.44
2077 2193 6.780457 ACTGCTATTTTGCACCATCTTATT 57.220 33.333 0.00 0.00 38.12 1.40
2162 2278 0.919289 GGTTTGGGGATGAGAGGGGA 60.919 60.000 0.00 0.00 0.00 4.81
2189 2305 1.307866 GATGGGGTGGAAGGGAGGA 60.308 63.158 0.00 0.00 0.00 3.71
2310 2446 3.640407 GCAGCCACCCAGTCTCCA 61.640 66.667 0.00 0.00 0.00 3.86
2383 2520 0.701731 CCCCACAAACCCACCTATGA 59.298 55.000 0.00 0.00 0.00 2.15
2402 2539 3.162666 TGACTTTCTCCACGAGGTACAT 58.837 45.455 0.00 0.00 35.89 2.29
2498 2635 7.715265 TGTAATCTTGTTCAGAACTTCAGAC 57.285 36.000 14.51 6.41 34.16 3.51
2528 2665 7.114754 ACAGATGAGAATGGTGATTTATGTGT 58.885 34.615 0.00 0.00 0.00 3.72
2605 2742 6.542821 TGGTCTCATCAGTTTCCATAGTTTT 58.457 36.000 0.00 0.00 0.00 2.43
2623 2760 5.140454 AGTTTTTAGAGTCTGCCACCAAAT 58.860 37.500 1.86 0.00 0.00 2.32
2631 2768 2.423538 GTCTGCCACCAAATGACCATAC 59.576 50.000 0.00 0.00 0.00 2.39
2661 2798 2.511600 GTTCCCGATCCTGTGCGG 60.512 66.667 0.00 0.00 46.80 5.69
2668 2805 4.552365 ATCCTGTGCGGCCCATCG 62.552 66.667 0.00 0.00 0.00 3.84
2818 2955 3.684408 ACTAGATTCCCGGAGTACCTT 57.316 47.619 0.73 0.00 0.00 3.50
2977 3114 7.234782 TCTCTGTTCTTAGTTTTCCAGTGGATA 59.765 37.037 14.00 5.25 0.00 2.59
3067 3204 7.599245 GCACTGTGTGTAGTCTTCTATTTTAGT 59.401 37.037 9.86 0.00 35.75 2.24
3331 3468 5.104360 ACTGGTATGTATGGTCTTGCTCATT 60.104 40.000 0.00 0.00 0.00 2.57
3388 3525 8.472683 ACTCTGAATCTTGTTTAATCTCTTCG 57.527 34.615 0.00 0.00 0.00 3.79
3717 4090 5.385617 GCAGCAACTTTAGATACAACACTG 58.614 41.667 0.00 0.00 0.00 3.66
3729 4102 7.418337 AGATACAACACTGACATACATACCA 57.582 36.000 0.00 0.00 0.00 3.25
3732 4105 5.237815 ACAACACTGACATACATACCACTG 58.762 41.667 0.00 0.00 0.00 3.66
4165 8094 1.986413 CCACACCTCCTCCTTCCAG 59.014 63.158 0.00 0.00 0.00 3.86
4217 8152 3.054582 TCCAGTAGCTCGTCCTCTTCTAA 60.055 47.826 0.00 0.00 0.00 2.10
4525 8476 6.899393 AAAATATCACCACACAGTTCATGT 57.101 33.333 0.00 0.00 45.43 3.21
4642 8638 3.715495 CACACAAGCTGGCATACAAAAA 58.285 40.909 0.00 0.00 0.00 1.94
4694 8691 2.683968 GTCGGTGAACTTGAGCATGTA 58.316 47.619 0.00 0.00 0.00 2.29
4703 8700 0.677731 TTGAGCATGTAGGCCTGCAC 60.678 55.000 26.96 14.47 38.47 4.57
4825 9806 1.371558 GTCAAGTGGGAAGCCGTCT 59.628 57.895 0.00 0.00 0.00 4.18
4876 9857 1.037493 CCACCTGATCGGGATCGTAA 58.963 55.000 27.90 0.00 40.63 3.18
5159 10173 3.842923 CATCGGGCGAGCACTCCT 61.843 66.667 0.00 0.00 0.00 3.69
5317 10338 1.221021 GCCGTGCTAGCTAGGGTTT 59.779 57.895 22.10 0.00 0.00 3.27
5379 10402 2.426023 GCGTTGGTGACCTCCTGT 59.574 61.111 2.11 0.00 0.00 4.00
5676 10759 0.252057 CGGGAGGGTTTTGGGGAAAT 60.252 55.000 0.00 0.00 0.00 2.17
5677 10760 1.275666 GGGAGGGTTTTGGGGAAATG 58.724 55.000 0.00 0.00 0.00 2.32
5678 10761 1.275666 GGAGGGTTTTGGGGAAATGG 58.724 55.000 0.00 0.00 0.00 3.16
5679 10762 1.203250 GGAGGGTTTTGGGGAAATGGA 60.203 52.381 0.00 0.00 0.00 3.41
5680 10763 2.179427 GAGGGTTTTGGGGAAATGGAG 58.821 52.381 0.00 0.00 0.00 3.86
5681 10764 1.203300 AGGGTTTTGGGGAAATGGAGG 60.203 52.381 0.00 0.00 0.00 4.30
5682 10765 1.275666 GGTTTTGGGGAAATGGAGGG 58.724 55.000 0.00 0.00 0.00 4.30
5683 10766 1.203250 GGTTTTGGGGAAATGGAGGGA 60.203 52.381 0.00 0.00 0.00 4.20
5684 10767 2.615391 GTTTTGGGGAAATGGAGGGAA 58.385 47.619 0.00 0.00 0.00 3.97
5695 10788 0.477597 TGGAGGGAAATGGTGGAGGT 60.478 55.000 0.00 0.00 0.00 3.85
5945 11046 7.819500 TCATTCCTTCTGATCCATATTCCTTT 58.180 34.615 0.00 0.00 0.00 3.11
6203 11304 1.200948 TGTCGACTGTCTCATGCTCAG 59.799 52.381 17.92 9.07 35.60 3.35
6288 11389 1.375098 GGACCTACCGGACTGTCGAG 61.375 65.000 9.46 0.00 0.00 4.04
6639 11750 3.058914 GTGCTGTGGTGTGTTCTCATTAC 60.059 47.826 0.00 0.00 0.00 1.89
6734 11848 6.707440 TTGGTTTGCTTCTGTTTCTTGATA 57.293 33.333 0.00 0.00 0.00 2.15
6737 11851 7.725251 TGGTTTGCTTCTGTTTCTTGATATTT 58.275 30.769 0.00 0.00 0.00 1.40
6884 11999 9.781834 TTGCTTTTGTTATCTTATGAAATACCG 57.218 29.630 0.00 0.00 0.00 4.02
6952 12093 4.895224 TTACTCTGTCTGCAGTATACCG 57.105 45.455 14.67 1.22 43.05 4.02
7096 12246 3.785486 TGAAGTGATCGCCTAGATTGTG 58.215 45.455 1.76 0.00 40.26 3.33
7180 12332 4.981806 TTTTTATTCATTCCCTCGCTGG 57.018 40.909 0.00 0.00 0.00 4.85
7207 12361 6.746745 TTCGTCAGTTTAGTTGTTTTTCCT 57.253 33.333 0.00 0.00 0.00 3.36
7402 12556 1.177401 GGCCCTTCAAGACATGGAAC 58.823 55.000 0.00 0.00 0.00 3.62
7426 12580 2.125753 CACGACAGCAGCTCCTCC 60.126 66.667 0.00 0.00 0.00 4.30
7438 12592 2.683933 TCCTCCGGGAACAGCTCC 60.684 66.667 0.00 0.00 44.54 4.70
7572 12729 5.392767 AGTACATCGAATATCTTGCCGAT 57.607 39.130 0.00 0.00 41.72 4.18
7661 12818 3.296709 GACCACATGTCGACGCCCT 62.297 63.158 11.62 0.00 33.49 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.361977 CGGCGTTTTGGGACCAGG 61.362 66.667 0.00 0.00 0.00 4.45
1 2 2.281208 TCGGCGTTTTGGGACCAG 60.281 61.111 6.85 0.00 0.00 4.00
4 5 0.317519 CTTTGTCGGCGTTTTGGGAC 60.318 55.000 6.85 0.00 0.00 4.46
5 6 1.448922 CCTTTGTCGGCGTTTTGGGA 61.449 55.000 6.85 0.00 0.00 4.37
6 7 1.007849 CCTTTGTCGGCGTTTTGGG 60.008 57.895 6.85 1.57 0.00 4.12
7 8 0.382515 TTCCTTTGTCGGCGTTTTGG 59.617 50.000 6.85 4.62 0.00 3.28
8 9 2.415697 ATTCCTTTGTCGGCGTTTTG 57.584 45.000 6.85 0.00 0.00 2.44
9 10 4.571372 TTAATTCCTTTGTCGGCGTTTT 57.429 36.364 6.85 0.00 0.00 2.43
10 11 4.276431 TCTTTAATTCCTTTGTCGGCGTTT 59.724 37.500 6.85 0.00 0.00 3.60
11 12 3.816523 TCTTTAATTCCTTTGTCGGCGTT 59.183 39.130 6.85 0.00 0.00 4.84
12 13 3.404899 TCTTTAATTCCTTTGTCGGCGT 58.595 40.909 6.85 0.00 0.00 5.68
13 14 4.413495 TTCTTTAATTCCTTTGTCGGCG 57.587 40.909 0.00 0.00 0.00 6.46
14 15 8.751302 TTTATTTCTTTAATTCCTTTGTCGGC 57.249 30.769 0.00 0.00 0.00 5.54
15 16 9.908152 ACTTTATTTCTTTAATTCCTTTGTCGG 57.092 29.630 0.00 0.00 0.00 4.79
32 34 3.242518 GGCAAACCGCAGACTTTATTTC 58.757 45.455 0.00 0.00 45.17 2.17
87 89 9.449719 GTGGGAAAAGAGTTATTATCAAAGAGA 57.550 33.333 0.00 0.00 0.00 3.10
101 103 4.777896 TGCTATAGTGAGTGGGAAAAGAGT 59.222 41.667 0.84 0.00 0.00 3.24
193 197 8.641499 ACAGAAAAATTAGAACGCATGAAAAA 57.359 26.923 0.00 0.00 0.00 1.94
429 437 9.888878 CACATGAACTATATTAAAGAAGCATGG 57.111 33.333 0.00 0.00 35.11 3.66
530 538 5.047021 CCATACACCATCCCTCATACAGTAG 60.047 48.000 0.00 0.00 0.00 2.57
531 539 4.838423 CCATACACCATCCCTCATACAGTA 59.162 45.833 0.00 0.00 0.00 2.74
560 568 0.098376 CCGAGCTACGACCTACACAC 59.902 60.000 7.07 0.00 45.77 3.82
561 569 1.028330 CCCGAGCTACGACCTACACA 61.028 60.000 7.07 0.00 45.77 3.72
586 594 1.076841 TCAACCTGGATTTGATGGCCA 59.923 47.619 8.56 8.56 0.00 5.36
587 595 1.851304 TCAACCTGGATTTGATGGCC 58.149 50.000 0.00 0.00 0.00 5.36
591 599 7.580910 ACTAATCTCATCAACCTGGATTTGAT 58.419 34.615 0.00 3.53 43.13 2.57
592 600 6.962182 ACTAATCTCATCAACCTGGATTTGA 58.038 36.000 0.00 0.79 37.38 2.69
593 601 7.636150 AACTAATCTCATCAACCTGGATTTG 57.364 36.000 0.00 0.00 0.00 2.32
594 602 8.655935 AAAACTAATCTCATCAACCTGGATTT 57.344 30.769 0.00 0.00 0.00 2.17
595 603 9.753674 TTAAAACTAATCTCATCAACCTGGATT 57.246 29.630 0.00 0.00 0.00 3.01
596 604 9.753674 TTTAAAACTAATCTCATCAACCTGGAT 57.246 29.630 0.00 0.00 0.00 3.41
597 605 9.581289 TTTTAAAACTAATCTCATCAACCTGGA 57.419 29.630 0.00 0.00 0.00 3.86
598 606 9.626045 GTTTTAAAACTAATCTCATCAACCTGG 57.374 33.333 21.27 0.00 36.03 4.45
621 629 9.865321 CCATTTCAAGTGAATGATCAATAGTTT 57.135 29.630 0.00 0.00 37.30 2.66
622 630 7.977853 GCCATTTCAAGTGAATGATCAATAGTT 59.022 33.333 0.00 0.00 37.30 2.24
623 631 7.123098 TGCCATTTCAAGTGAATGATCAATAGT 59.877 33.333 0.00 0.00 37.30 2.12
624 632 7.485810 TGCCATTTCAAGTGAATGATCAATAG 58.514 34.615 0.00 0.00 37.30 1.73
625 633 7.407393 TGCCATTTCAAGTGAATGATCAATA 57.593 32.000 0.00 0.00 37.30 1.90
626 634 6.288941 TGCCATTTCAAGTGAATGATCAAT 57.711 33.333 0.00 0.00 37.30 2.57
627 635 5.725325 TGCCATTTCAAGTGAATGATCAA 57.275 34.783 0.00 0.00 37.30 2.57
628 636 5.394773 CCATGCCATTTCAAGTGAATGATCA 60.395 40.000 0.00 0.00 33.54 2.92
629 637 5.047847 CCATGCCATTTCAAGTGAATGATC 58.952 41.667 0.00 0.00 33.54 2.92
630 638 4.468510 ACCATGCCATTTCAAGTGAATGAT 59.531 37.500 0.00 0.00 33.54 2.45
631 639 3.833650 ACCATGCCATTTCAAGTGAATGA 59.166 39.130 0.00 0.00 33.54 2.57
632 640 4.196626 ACCATGCCATTTCAAGTGAATG 57.803 40.909 0.00 0.00 33.54 2.67
633 641 4.283978 TGAACCATGCCATTTCAAGTGAAT 59.716 37.500 0.00 0.00 33.54 2.57
634 642 3.640498 TGAACCATGCCATTTCAAGTGAA 59.360 39.130 0.00 0.00 0.00 3.18
635 643 3.229293 TGAACCATGCCATTTCAAGTGA 58.771 40.909 0.00 0.00 0.00 3.41
636 644 3.663995 TGAACCATGCCATTTCAAGTG 57.336 42.857 0.00 0.00 0.00 3.16
637 645 4.563993 CCATTGAACCATGCCATTTCAAGT 60.564 41.667 9.64 0.00 41.33 3.16
638 646 3.936453 CCATTGAACCATGCCATTTCAAG 59.064 43.478 9.64 3.85 41.33 3.02
639 647 3.869140 GCCATTGAACCATGCCATTTCAA 60.869 43.478 6.93 6.93 42.02 2.69
640 648 2.354906 GCCATTGAACCATGCCATTTCA 60.355 45.455 0.00 0.00 0.00 2.69
641 649 2.282407 GCCATTGAACCATGCCATTTC 58.718 47.619 0.00 0.00 0.00 2.17
642 650 1.065272 GGCCATTGAACCATGCCATTT 60.065 47.619 0.00 0.00 41.76 2.32
643 651 0.542805 GGCCATTGAACCATGCCATT 59.457 50.000 0.00 0.00 41.76 3.16
644 652 1.678598 CGGCCATTGAACCATGCCAT 61.679 55.000 2.24 0.00 42.27 4.40
645 653 2.349672 CGGCCATTGAACCATGCCA 61.350 57.895 2.24 0.00 42.27 4.92
646 654 2.495866 CGGCCATTGAACCATGCC 59.504 61.111 2.24 0.00 38.74 4.40
647 655 2.350458 ACCGGCCATTGAACCATGC 61.350 57.895 0.00 0.00 0.00 4.06
648 656 1.250154 ACACCGGCCATTGAACCATG 61.250 55.000 0.00 0.00 0.00 3.66
649 657 1.076549 ACACCGGCCATTGAACCAT 59.923 52.632 0.00 0.00 0.00 3.55
650 658 1.900981 CACACCGGCCATTGAACCA 60.901 57.895 0.00 0.00 0.00 3.67
651 659 2.961768 CACACCGGCCATTGAACC 59.038 61.111 0.00 0.00 0.00 3.62
652 660 1.876497 ATGCACACCGGCCATTGAAC 61.876 55.000 0.00 0.00 0.00 3.18
653 661 1.606025 ATGCACACCGGCCATTGAA 60.606 52.632 0.00 0.00 0.00 2.69
654 662 2.035469 ATGCACACCGGCCATTGA 59.965 55.556 0.00 0.00 0.00 2.57
655 663 2.182284 CATGCACACCGGCCATTG 59.818 61.111 0.00 0.24 0.00 2.82
656 664 3.762247 GCATGCACACCGGCCATT 61.762 61.111 14.21 0.00 0.00 3.16
669 677 1.263484 GATGATCTCAAGCACCGCATG 59.737 52.381 0.00 0.00 0.00 4.06
670 678 1.134310 TGATGATCTCAAGCACCGCAT 60.134 47.619 0.00 0.00 0.00 4.73
671 679 0.249955 TGATGATCTCAAGCACCGCA 59.750 50.000 0.00 0.00 0.00 5.69
672 680 1.530293 GATGATGATCTCAAGCACCGC 59.470 52.381 0.00 0.00 37.44 5.68
673 681 3.109044 AGATGATGATCTCAAGCACCG 57.891 47.619 0.00 0.00 33.20 4.94
674 682 4.036498 CCAAAGATGATGATCTCAAGCACC 59.964 45.833 0.00 0.00 38.03 5.01
675 683 4.036498 CCCAAAGATGATGATCTCAAGCAC 59.964 45.833 0.00 0.00 38.03 4.40
676 684 4.080186 TCCCAAAGATGATGATCTCAAGCA 60.080 41.667 0.00 0.00 38.03 3.91
677 685 4.458397 TCCCAAAGATGATGATCTCAAGC 58.542 43.478 0.00 0.00 38.03 4.01
678 686 6.771267 TCAATCCCAAAGATGATGATCTCAAG 59.229 38.462 0.00 0.00 38.03 3.02
679 687 6.665695 TCAATCCCAAAGATGATGATCTCAA 58.334 36.000 0.00 0.00 38.03 3.02
680 688 6.256643 TCAATCCCAAAGATGATGATCTCA 57.743 37.500 0.00 0.00 38.03 3.27
681 689 6.940867 TGATCAATCCCAAAGATGATGATCTC 59.059 38.462 14.08 0.00 43.60 2.75
682 690 6.849151 TGATCAATCCCAAAGATGATGATCT 58.151 36.000 14.08 0.00 43.60 2.75
683 691 7.520451 TTGATCAATCCCAAAGATGATGATC 57.480 36.000 3.38 9.11 43.56 2.92
684 692 8.492415 AATTGATCAATCCCAAAGATGATGAT 57.508 30.769 20.95 0.00 35.86 2.45
685 693 7.907841 AATTGATCAATCCCAAAGATGATGA 57.092 32.000 20.95 0.00 34.56 2.92
686 694 9.639601 CATAATTGATCAATCCCAAAGATGATG 57.360 33.333 20.95 2.53 34.56 3.07
687 695 8.812972 CCATAATTGATCAATCCCAAAGATGAT 58.187 33.333 20.95 3.98 34.56 2.45
688 696 8.005976 TCCATAATTGATCAATCCCAAAGATGA 58.994 33.333 20.95 6.34 34.56 2.92
689 697 8.086522 GTCCATAATTGATCAATCCCAAAGATG 58.913 37.037 20.95 13.96 34.56 2.90
690 698 7.040201 CGTCCATAATTGATCAATCCCAAAGAT 60.040 37.037 20.95 5.88 36.48 2.40
691 699 6.262944 CGTCCATAATTGATCAATCCCAAAGA 59.737 38.462 20.95 10.64 0.00 2.52
692 700 6.039717 ACGTCCATAATTGATCAATCCCAAAG 59.960 38.462 20.95 12.20 0.00 2.77
693 701 5.890985 ACGTCCATAATTGATCAATCCCAAA 59.109 36.000 20.95 5.22 0.00 3.28
694 702 5.445069 ACGTCCATAATTGATCAATCCCAA 58.555 37.500 20.95 8.07 0.00 4.12
695 703 5.047566 ACGTCCATAATTGATCAATCCCA 57.952 39.130 20.95 10.08 0.00 4.37
696 704 7.687941 AATACGTCCATAATTGATCAATCCC 57.312 36.000 20.95 5.42 0.00 3.85
697 705 7.957484 CGAAATACGTCCATAATTGATCAATCC 59.043 37.037 20.95 5.10 37.22 3.01
698 706 8.708742 TCGAAATACGTCCATAATTGATCAATC 58.291 33.333 20.95 6.91 43.13 2.67
699 707 8.601845 TCGAAATACGTCCATAATTGATCAAT 57.398 30.769 15.36 15.36 43.13 2.57
700 708 8.332464 GTTCGAAATACGTCCATAATTGATCAA 58.668 33.333 11.26 11.26 43.13 2.57
701 709 7.492994 TGTTCGAAATACGTCCATAATTGATCA 59.507 33.333 0.00 0.00 43.13 2.92
702 710 7.792508 GTGTTCGAAATACGTCCATAATTGATC 59.207 37.037 0.00 0.00 43.13 2.92
703 711 7.254658 GGTGTTCGAAATACGTCCATAATTGAT 60.255 37.037 0.00 0.00 43.13 2.57
704 712 6.036300 GGTGTTCGAAATACGTCCATAATTGA 59.964 38.462 0.00 0.00 43.13 2.57
705 713 6.189567 GGTGTTCGAAATACGTCCATAATTG 58.810 40.000 0.00 0.00 43.13 2.32
706 714 5.005971 CGGTGTTCGAAATACGTCCATAATT 59.994 40.000 0.00 0.00 42.43 1.40
707 715 4.505191 CGGTGTTCGAAATACGTCCATAAT 59.495 41.667 0.00 0.00 42.43 1.28
708 716 3.858812 CGGTGTTCGAAATACGTCCATAA 59.141 43.478 0.00 0.00 42.43 1.90
709 717 3.119531 ACGGTGTTCGAAATACGTCCATA 60.120 43.478 14.09 0.00 42.43 2.74
710 718 2.264813 CGGTGTTCGAAATACGTCCAT 58.735 47.619 0.00 0.00 42.43 3.41
711 719 1.000385 ACGGTGTTCGAAATACGTCCA 60.000 47.619 14.09 0.00 42.43 4.02
712 720 1.701704 ACGGTGTTCGAAATACGTCC 58.298 50.000 14.09 3.89 42.43 4.79
713 721 4.315965 CGATTACGGTGTTCGAAATACGTC 60.316 45.833 20.54 9.82 42.43 4.34
714 722 3.543494 CGATTACGGTGTTCGAAATACGT 59.457 43.478 20.68 20.68 42.43 3.57
715 723 3.543494 ACGATTACGGTGTTCGAAATACG 59.457 43.478 17.59 7.26 44.46 3.06
716 724 4.259530 CCACGATTACGGTGTTCGAAATAC 60.260 45.833 17.59 2.02 44.46 1.89
717 725 3.858812 CCACGATTACGGTGTTCGAAATA 59.141 43.478 17.59 0.00 44.46 1.40
718 726 2.669434 CCACGATTACGGTGTTCGAAAT 59.331 45.455 17.59 0.00 44.46 2.17
719 727 2.060284 CCACGATTACGGTGTTCGAAA 58.940 47.619 17.59 0.00 44.46 3.46
720 728 1.700523 CCACGATTACGGTGTTCGAA 58.299 50.000 17.59 0.00 44.46 3.71
721 729 0.733566 GCCACGATTACGGTGTTCGA 60.734 55.000 17.59 0.00 44.46 3.71
722 730 1.689352 GGCCACGATTACGGTGTTCG 61.689 60.000 0.00 11.42 44.46 3.95
723 731 0.671163 TGGCCACGATTACGGTGTTC 60.671 55.000 0.00 0.00 44.46 3.18
724 732 0.672401 CTGGCCACGATTACGGTGTT 60.672 55.000 0.00 0.00 44.46 3.32
725 733 1.079405 CTGGCCACGATTACGGTGT 60.079 57.895 0.00 0.00 44.46 4.16
726 734 1.079405 ACTGGCCACGATTACGGTG 60.079 57.895 0.00 0.00 44.46 4.94
727 735 1.079405 CACTGGCCACGATTACGGT 60.079 57.895 0.00 0.00 44.46 4.83
728 736 0.390603 TTCACTGGCCACGATTACGG 60.391 55.000 0.00 0.00 44.46 4.02
729 737 0.999406 CTTCACTGGCCACGATTACG 59.001 55.000 0.00 0.00 45.75 3.18
730 738 1.369625 CCTTCACTGGCCACGATTAC 58.630 55.000 0.00 0.00 0.00 1.89
731 739 0.392461 GCCTTCACTGGCCACGATTA 60.392 55.000 0.00 0.00 46.82 1.75
732 740 1.675641 GCCTTCACTGGCCACGATT 60.676 57.895 0.00 0.00 46.82 3.34
733 741 2.045926 GCCTTCACTGGCCACGAT 60.046 61.111 0.00 0.00 46.82 3.73
740 748 1.160137 CTCCTTTTCGCCTTCACTGG 58.840 55.000 0.00 0.00 0.00 4.00
741 749 1.160137 CCTCCTTTTCGCCTTCACTG 58.840 55.000 0.00 0.00 0.00 3.66
742 750 1.056660 TCCTCCTTTTCGCCTTCACT 58.943 50.000 0.00 0.00 0.00 3.41
743 751 2.115343 ATCCTCCTTTTCGCCTTCAC 57.885 50.000 0.00 0.00 0.00 3.18
744 752 3.992943 TTATCCTCCTTTTCGCCTTCA 57.007 42.857 0.00 0.00 0.00 3.02
745 753 3.063588 CGTTTATCCTCCTTTTCGCCTTC 59.936 47.826 0.00 0.00 0.00 3.46
746 754 3.007635 CGTTTATCCTCCTTTTCGCCTT 58.992 45.455 0.00 0.00 0.00 4.35
747 755 2.629051 CGTTTATCCTCCTTTTCGCCT 58.371 47.619 0.00 0.00 0.00 5.52
748 756 1.669265 CCGTTTATCCTCCTTTTCGCC 59.331 52.381 0.00 0.00 0.00 5.54
749 757 1.063616 GCCGTTTATCCTCCTTTTCGC 59.936 52.381 0.00 0.00 0.00 4.70
750 758 1.326548 CGCCGTTTATCCTCCTTTTCG 59.673 52.381 0.00 0.00 0.00 3.46
751 759 2.350804 GTCGCCGTTTATCCTCCTTTTC 59.649 50.000 0.00 0.00 0.00 2.29
752 760 2.289819 TGTCGCCGTTTATCCTCCTTTT 60.290 45.455 0.00 0.00 0.00 2.27
753 761 1.276989 TGTCGCCGTTTATCCTCCTTT 59.723 47.619 0.00 0.00 0.00 3.11
754 762 0.899720 TGTCGCCGTTTATCCTCCTT 59.100 50.000 0.00 0.00 0.00 3.36
755 763 1.120530 ATGTCGCCGTTTATCCTCCT 58.879 50.000 0.00 0.00 0.00 3.69
756 764 2.295349 TCTATGTCGCCGTTTATCCTCC 59.705 50.000 0.00 0.00 0.00 4.30
757 765 3.637998 TCTATGTCGCCGTTTATCCTC 57.362 47.619 0.00 0.00 0.00 3.71
758 766 3.572682 TCATCTATGTCGCCGTTTATCCT 59.427 43.478 0.00 0.00 0.00 3.24
759 767 3.909430 TCATCTATGTCGCCGTTTATCC 58.091 45.455 0.00 0.00 0.00 2.59
760 768 4.201628 GCATCATCTATGTCGCCGTTTATC 60.202 45.833 0.00 0.00 37.93 1.75
761 769 3.679980 GCATCATCTATGTCGCCGTTTAT 59.320 43.478 0.00 0.00 37.93 1.40
762 770 3.057019 GCATCATCTATGTCGCCGTTTA 58.943 45.455 0.00 0.00 37.93 2.01
763 771 1.867233 GCATCATCTATGTCGCCGTTT 59.133 47.619 0.00 0.00 37.93 3.60
764 772 1.202521 TGCATCATCTATGTCGCCGTT 60.203 47.619 0.00 0.00 37.93 4.44
765 773 0.389025 TGCATCATCTATGTCGCCGT 59.611 50.000 0.00 0.00 37.93 5.68
766 774 1.718396 ATGCATCATCTATGTCGCCG 58.282 50.000 0.00 0.00 37.93 6.46
767 775 2.810274 ACAATGCATCATCTATGTCGCC 59.190 45.455 0.00 0.00 37.93 5.54
768 776 3.249320 ACACAATGCATCATCTATGTCGC 59.751 43.478 0.00 0.00 37.93 5.19
769 777 5.006941 TCAACACAATGCATCATCTATGTCG 59.993 40.000 0.00 0.00 37.93 4.35
770 778 6.367686 TCAACACAATGCATCATCTATGTC 57.632 37.500 0.00 0.00 37.93 3.06
771 779 6.762702 TTCAACACAATGCATCATCTATGT 57.237 33.333 0.00 0.00 37.93 2.29
772 780 9.394477 CTATTTCAACACAATGCATCATCTATG 57.606 33.333 0.00 0.00 38.74 2.23
773 781 9.346005 TCTATTTCAACACAATGCATCATCTAT 57.654 29.630 0.00 0.00 0.00 1.98
774 782 8.615211 GTCTATTTCAACACAATGCATCATCTA 58.385 33.333 0.00 0.00 0.00 1.98
775 783 7.121611 TGTCTATTTCAACACAATGCATCATCT 59.878 33.333 0.00 0.00 0.00 2.90
776 784 7.252708 TGTCTATTTCAACACAATGCATCATC 58.747 34.615 0.00 0.00 0.00 2.92
777 785 7.160547 TGTCTATTTCAACACAATGCATCAT 57.839 32.000 0.00 0.00 0.00 2.45
778 786 6.572167 TGTCTATTTCAACACAATGCATCA 57.428 33.333 0.00 0.00 0.00 3.07
779 787 7.891782 CATTGTCTATTTCAACACAATGCATC 58.108 34.615 0.00 0.00 45.41 3.91
780 788 7.821595 CATTGTCTATTTCAACACAATGCAT 57.178 32.000 9.92 0.00 45.41 3.96
784 792 7.370383 GTCCACATTGTCTATTTCAACACAAT 58.630 34.615 0.00 0.00 39.52 2.71
785 793 6.238897 GGTCCACATTGTCTATTTCAACACAA 60.239 38.462 0.00 0.00 33.42 3.33
786 794 5.240623 GGTCCACATTGTCTATTTCAACACA 59.759 40.000 0.00 0.00 0.00 3.72
787 795 5.473504 AGGTCCACATTGTCTATTTCAACAC 59.526 40.000 0.00 0.00 0.00 3.32
788 796 5.473162 CAGGTCCACATTGTCTATTTCAACA 59.527 40.000 0.00 0.00 0.00 3.33
789 797 5.473504 ACAGGTCCACATTGTCTATTTCAAC 59.526 40.000 0.00 0.00 0.00 3.18
790 798 5.473162 CACAGGTCCACATTGTCTATTTCAA 59.527 40.000 0.00 0.00 0.00 2.69
791 799 5.003160 CACAGGTCCACATTGTCTATTTCA 58.997 41.667 0.00 0.00 0.00 2.69
792 800 4.396166 CCACAGGTCCACATTGTCTATTTC 59.604 45.833 0.00 0.00 0.00 2.17
793 801 4.042809 TCCACAGGTCCACATTGTCTATTT 59.957 41.667 0.00 0.00 0.00 1.40
794 802 3.587061 TCCACAGGTCCACATTGTCTATT 59.413 43.478 0.00 0.00 0.00 1.73
795 803 3.181329 TCCACAGGTCCACATTGTCTAT 58.819 45.455 0.00 0.00 0.00 1.98
796 804 2.567169 CTCCACAGGTCCACATTGTCTA 59.433 50.000 0.00 0.00 0.00 2.59
797 805 1.349026 CTCCACAGGTCCACATTGTCT 59.651 52.381 0.00 0.00 0.00 3.41
798 806 1.347707 TCTCCACAGGTCCACATTGTC 59.652 52.381 0.00 0.00 0.00 3.18
799 807 1.434188 TCTCCACAGGTCCACATTGT 58.566 50.000 0.00 0.00 0.00 2.71
800 808 2.290514 ACATCTCCACAGGTCCACATTG 60.291 50.000 0.00 0.00 0.00 2.82
801 809 1.988107 ACATCTCCACAGGTCCACATT 59.012 47.619 0.00 0.00 0.00 2.71
802 810 1.661463 ACATCTCCACAGGTCCACAT 58.339 50.000 0.00 0.00 0.00 3.21
803 811 1.434188 AACATCTCCACAGGTCCACA 58.566 50.000 0.00 0.00 0.00 4.17
804 812 2.568623 AAACATCTCCACAGGTCCAC 57.431 50.000 0.00 0.00 0.00 4.02
805 813 3.593442 AAAAACATCTCCACAGGTCCA 57.407 42.857 0.00 0.00 0.00 4.02
806 814 4.010349 CCTAAAAACATCTCCACAGGTCC 58.990 47.826 0.00 0.00 0.00 4.46
807 815 3.440522 GCCTAAAAACATCTCCACAGGTC 59.559 47.826 0.00 0.00 0.00 3.85
808 816 3.421844 GCCTAAAAACATCTCCACAGGT 58.578 45.455 0.00 0.00 0.00 4.00
809 817 2.420022 CGCCTAAAAACATCTCCACAGG 59.580 50.000 0.00 0.00 0.00 4.00
810 818 3.074412 ACGCCTAAAAACATCTCCACAG 58.926 45.455 0.00 0.00 0.00 3.66
811 819 2.811431 CACGCCTAAAAACATCTCCACA 59.189 45.455 0.00 0.00 0.00 4.17
812 820 2.414161 GCACGCCTAAAAACATCTCCAC 60.414 50.000 0.00 0.00 0.00 4.02
813 821 1.810151 GCACGCCTAAAAACATCTCCA 59.190 47.619 0.00 0.00 0.00 3.86
814 822 2.084546 AGCACGCCTAAAAACATCTCC 58.915 47.619 0.00 0.00 0.00 3.71
815 823 3.831715 AAGCACGCCTAAAAACATCTC 57.168 42.857 0.00 0.00 0.00 2.75
816 824 5.897377 AATAAGCACGCCTAAAAACATCT 57.103 34.783 0.00 0.00 0.00 2.90
817 825 6.142320 GCATAATAAGCACGCCTAAAAACATC 59.858 38.462 0.00 0.00 0.00 3.06
818 826 5.977129 GCATAATAAGCACGCCTAAAAACAT 59.023 36.000 0.00 0.00 0.00 2.71
819 827 5.124776 AGCATAATAAGCACGCCTAAAAACA 59.875 36.000 0.00 0.00 0.00 2.83
820 828 5.578776 AGCATAATAAGCACGCCTAAAAAC 58.421 37.500 0.00 0.00 0.00 2.43
821 829 5.828299 AGCATAATAAGCACGCCTAAAAA 57.172 34.783 0.00 0.00 0.00 1.94
822 830 5.468746 CCTAGCATAATAAGCACGCCTAAAA 59.531 40.000 0.00 0.00 0.00 1.52
823 831 4.994852 CCTAGCATAATAAGCACGCCTAAA 59.005 41.667 0.00 0.00 0.00 1.85
824 832 4.282449 TCCTAGCATAATAAGCACGCCTAA 59.718 41.667 0.00 0.00 0.00 2.69
825 833 3.830178 TCCTAGCATAATAAGCACGCCTA 59.170 43.478 0.00 0.00 0.00 3.93
826 834 2.632996 TCCTAGCATAATAAGCACGCCT 59.367 45.455 0.00 0.00 0.00 5.52
827 835 2.996621 CTCCTAGCATAATAAGCACGCC 59.003 50.000 0.00 0.00 0.00 5.68
828 836 3.654414 ACTCCTAGCATAATAAGCACGC 58.346 45.455 0.00 0.00 0.00 5.34
829 837 5.523916 ACAAACTCCTAGCATAATAAGCACG 59.476 40.000 0.00 0.00 0.00 5.34
830 838 6.927294 ACAAACTCCTAGCATAATAAGCAC 57.073 37.500 0.00 0.00 0.00 4.40
831 839 9.627123 AAATACAAACTCCTAGCATAATAAGCA 57.373 29.630 0.00 0.00 0.00 3.91
860 868 3.064958 TGTCCGTGCGTTGTAATGAAAAA 59.935 39.130 0.00 0.00 0.00 1.94
861 869 2.612672 TGTCCGTGCGTTGTAATGAAAA 59.387 40.909 0.00 0.00 0.00 2.29
862 870 2.210961 TGTCCGTGCGTTGTAATGAAA 58.789 42.857 0.00 0.00 0.00 2.69
863 871 1.867166 TGTCCGTGCGTTGTAATGAA 58.133 45.000 0.00 0.00 0.00 2.57
864 872 1.729517 CATGTCCGTGCGTTGTAATGA 59.270 47.619 0.00 0.00 0.00 2.57
865 873 1.463056 ACATGTCCGTGCGTTGTAATG 59.537 47.619 0.00 0.00 0.00 1.90
866 874 1.803334 ACATGTCCGTGCGTTGTAAT 58.197 45.000 0.00 0.00 0.00 1.89
867 875 1.584175 AACATGTCCGTGCGTTGTAA 58.416 45.000 0.00 0.00 0.00 2.41
868 876 1.261885 CAAACATGTCCGTGCGTTGTA 59.738 47.619 0.00 0.00 0.00 2.41
869 877 0.028770 CAAACATGTCCGTGCGTTGT 59.971 50.000 0.00 0.00 0.00 3.32
870 878 1.268113 GCAAACATGTCCGTGCGTTG 61.268 55.000 11.86 6.59 0.00 4.10
871 879 1.008995 GCAAACATGTCCGTGCGTT 60.009 52.632 11.86 0.00 0.00 4.84
872 880 1.514678 ATGCAAACATGTCCGTGCGT 61.515 50.000 18.69 16.77 39.92 5.24
873 881 0.445829 TATGCAAACATGTCCGTGCG 59.554 50.000 18.69 0.01 39.92 5.34
874 882 1.198867 TGTATGCAAACATGTCCGTGC 59.801 47.619 17.69 17.69 37.04 5.34
875 883 3.550950 TTGTATGCAAACATGTCCGTG 57.449 42.857 0.00 0.00 37.04 4.94
876 884 3.611530 GCTTTGTATGCAAACATGTCCGT 60.612 43.478 4.71 0.00 39.43 4.69
877 885 2.916716 GCTTTGTATGCAAACATGTCCG 59.083 45.455 4.71 0.00 39.43 4.79
878 886 3.922240 CAGCTTTGTATGCAAACATGTCC 59.078 43.478 4.71 0.00 39.43 4.02
879 887 3.365820 GCAGCTTTGTATGCAAACATGTC 59.634 43.478 4.71 1.28 42.11 3.06
880 888 3.319755 GCAGCTTTGTATGCAAACATGT 58.680 40.909 4.71 0.00 42.11 3.21
881 889 2.669434 GGCAGCTTTGTATGCAAACATG 59.331 45.455 4.71 7.98 44.37 3.21
882 890 2.299582 TGGCAGCTTTGTATGCAAACAT 59.700 40.909 4.71 0.00 44.37 2.71
883 891 1.685517 TGGCAGCTTTGTATGCAAACA 59.314 42.857 4.71 0.00 44.37 2.83
884 892 2.061028 GTGGCAGCTTTGTATGCAAAC 58.939 47.619 4.71 3.28 44.37 2.93
885 893 1.000731 GGTGGCAGCTTTGTATGCAAA 59.999 47.619 9.90 8.73 44.37 3.68
886 894 0.602562 GGTGGCAGCTTTGTATGCAA 59.397 50.000 9.90 0.00 44.37 4.08
887 895 0.539207 TGGTGGCAGCTTTGTATGCA 60.539 50.000 18.53 0.00 44.37 3.96
888 896 0.171903 CTGGTGGCAGCTTTGTATGC 59.828 55.000 18.53 0.00 41.80 3.14
889 897 1.741706 CTCTGGTGGCAGCTTTGTATG 59.258 52.381 18.53 0.12 0.00 2.39
890 898 1.340405 CCTCTGGTGGCAGCTTTGTAT 60.340 52.381 18.53 0.00 0.00 2.29
891 899 0.036732 CCTCTGGTGGCAGCTTTGTA 59.963 55.000 18.53 0.00 0.00 2.41
892 900 1.228367 CCTCTGGTGGCAGCTTTGT 60.228 57.895 18.53 0.00 0.00 2.83
893 901 1.975407 CCCTCTGGTGGCAGCTTTG 60.975 63.158 18.53 8.24 0.00 2.77
894 902 2.437897 CCCTCTGGTGGCAGCTTT 59.562 61.111 18.53 0.00 0.00 3.51
911 919 3.652000 TTCGTTTCAACCGCCGGC 61.652 61.111 19.07 19.07 0.00 6.13
912 920 2.250190 GTTCGTTTCAACCGCCGG 59.750 61.111 0.00 0.00 0.00 6.13
913 921 2.091776 TTCGTTCGTTTCAACCGCCG 62.092 55.000 0.00 0.00 0.00 6.46
914 922 0.236449 ATTCGTTCGTTTCAACCGCC 59.764 50.000 0.00 0.00 0.00 6.13
915 923 1.314581 CATTCGTTCGTTTCAACCGC 58.685 50.000 0.00 0.00 0.00 5.68
916 924 1.314581 GCATTCGTTCGTTTCAACCG 58.685 50.000 0.00 0.00 0.00 4.44
917 925 2.392933 TGCATTCGTTCGTTTCAACC 57.607 45.000 0.00 0.00 0.00 3.77
918 926 4.746836 TTTTGCATTCGTTCGTTTCAAC 57.253 36.364 0.00 0.00 0.00 3.18
919 927 4.259056 CGTTTTTGCATTCGTTCGTTTCAA 60.259 37.500 0.00 0.00 0.00 2.69
920 928 3.238570 CGTTTTTGCATTCGTTCGTTTCA 59.761 39.130 0.00 0.00 0.00 2.69
921 929 3.238798 ACGTTTTTGCATTCGTTCGTTTC 59.761 39.130 0.00 0.00 32.62 2.78
922 930 3.172824 ACGTTTTTGCATTCGTTCGTTT 58.827 36.364 0.00 0.00 32.62 3.60
923 931 2.788030 ACGTTTTTGCATTCGTTCGTT 58.212 38.095 0.00 0.00 32.62 3.85
924 932 2.461897 ACGTTTTTGCATTCGTTCGT 57.538 40.000 0.00 0.00 32.62 3.85
927 935 2.533942 GCAGAACGTTTTTGCATTCGTT 59.466 40.909 24.86 14.82 46.51 3.85
928 936 2.116366 GCAGAACGTTTTTGCATTCGT 58.884 42.857 24.86 0.00 37.75 3.85
929 937 2.115595 TGCAGAACGTTTTTGCATTCG 58.884 42.857 27.19 2.34 42.41 3.34
933 941 1.906757 CAGTGCAGAACGTTTTTGCA 58.093 45.000 27.19 27.19 44.81 4.08
934 942 0.572125 GCAGTGCAGAACGTTTTTGC 59.428 50.000 23.73 23.73 38.30 3.68
935 943 0.839477 CGCAGTGCAGAACGTTTTTG 59.161 50.000 16.83 5.80 0.00 2.44
936 944 0.450184 ACGCAGTGCAGAACGTTTTT 59.550 45.000 16.83 0.00 42.51 1.94
937 945 2.094904 ACGCAGTGCAGAACGTTTT 58.905 47.368 16.83 0.00 42.51 2.43
971 979 3.118334 AGCTCTCTGGACAATCTTGATGG 60.118 47.826 0.00 0.00 0.00 3.51
1149 1159 4.825679 GTGGGGAGGGGAGGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
1221 1231 1.128692 CAAATCAAGAAGGCGACGACC 59.871 52.381 0.00 0.00 0.00 4.79
1225 1235 2.726241 GCAAACAAATCAAGAAGGCGAC 59.274 45.455 0.00 0.00 0.00 5.19
1347 1358 0.460284 AGATGCCAAGAACGCTACCG 60.460 55.000 0.00 0.00 41.14 4.02
1393 1505 5.389520 AGAAAGAAAGAAAGAAAGAGGGGG 58.610 41.667 0.00 0.00 0.00 5.40
1394 1506 6.968263 AAGAAAGAAAGAAAGAAAGAGGGG 57.032 37.500 0.00 0.00 0.00 4.79
1395 1507 8.231692 AGAAAGAAAGAAAGAAAGAAAGAGGG 57.768 34.615 0.00 0.00 0.00 4.30
1422 1534 9.846248 CTTCACAAAGAAAGAAAGAAAGAAAGA 57.154 29.630 0.00 0.00 35.40 2.52
1423 1535 9.080915 CCTTCACAAAGAAAGAAAGAAAGAAAG 57.919 33.333 0.00 0.00 35.40 2.62
1424 1536 8.802267 TCCTTCACAAAGAAAGAAAGAAAGAAA 58.198 29.630 0.00 0.00 35.40 2.52
1425 1537 8.348285 TCCTTCACAAAGAAAGAAAGAAAGAA 57.652 30.769 0.00 0.00 35.40 2.52
1426 1538 7.938140 TCCTTCACAAAGAAAGAAAGAAAGA 57.062 32.000 0.00 0.00 35.40 2.52
1427 1539 8.628280 AGATCCTTCACAAAGAAAGAAAGAAAG 58.372 33.333 0.00 0.00 35.40 2.62
1428 1540 8.408601 CAGATCCTTCACAAAGAAAGAAAGAAA 58.591 33.333 0.00 0.00 35.40 2.52
1429 1541 7.469181 GCAGATCCTTCACAAAGAAAGAAAGAA 60.469 37.037 0.00 0.00 35.40 2.52
1430 1542 6.016777 GCAGATCCTTCACAAAGAAAGAAAGA 60.017 38.462 0.00 0.00 35.40 2.52
1431 1543 6.016443 AGCAGATCCTTCACAAAGAAAGAAAG 60.016 38.462 0.00 0.00 35.40 2.62
1432 1544 5.829924 AGCAGATCCTTCACAAAGAAAGAAA 59.170 36.000 0.00 0.00 35.40 2.52
1433 1545 5.380043 AGCAGATCCTTCACAAAGAAAGAA 58.620 37.500 0.00 0.00 35.40 2.52
1434 1546 4.978099 AGCAGATCCTTCACAAAGAAAGA 58.022 39.130 0.00 0.00 35.40 2.52
1435 1547 5.702349 AAGCAGATCCTTCACAAAGAAAG 57.298 39.130 0.00 0.00 35.40 2.62
1436 1548 7.170965 AGATAAGCAGATCCTTCACAAAGAAA 58.829 34.615 0.00 0.00 35.40 2.52
1437 1549 6.715280 AGATAAGCAGATCCTTCACAAAGAA 58.285 36.000 0.00 0.00 34.14 2.52
1438 1550 6.305272 AGATAAGCAGATCCTTCACAAAGA 57.695 37.500 0.00 0.00 34.14 2.52
1439 1551 7.712264 CTAGATAAGCAGATCCTTCACAAAG 57.288 40.000 0.00 0.00 0.00 2.77
1475 1587 9.490083 AACTAGGTTCCATCAAGTACTACTAAT 57.510 33.333 0.00 0.00 0.00 1.73
1476 1588 8.890410 AACTAGGTTCCATCAAGTACTACTAA 57.110 34.615 0.00 0.00 0.00 2.24
1477 1589 8.334734 AGAACTAGGTTCCATCAAGTACTACTA 58.665 37.037 0.00 0.00 42.85 1.82
1478 1590 7.183460 AGAACTAGGTTCCATCAAGTACTACT 58.817 38.462 0.00 0.00 42.85 2.57
1479 1591 7.407393 AGAACTAGGTTCCATCAAGTACTAC 57.593 40.000 0.00 0.00 42.85 2.73
1480 1592 7.093465 CCAAGAACTAGGTTCCATCAAGTACTA 60.093 40.741 0.00 0.00 42.85 1.82
1481 1593 6.295916 CCAAGAACTAGGTTCCATCAAGTACT 60.296 42.308 6.77 0.00 42.85 2.73
1482 1594 5.875359 CCAAGAACTAGGTTCCATCAAGTAC 59.125 44.000 6.77 0.00 42.85 2.73
1483 1595 5.546499 ACCAAGAACTAGGTTCCATCAAGTA 59.454 40.000 6.77 0.00 42.85 2.24
1484 1596 4.351111 ACCAAGAACTAGGTTCCATCAAGT 59.649 41.667 6.77 0.00 42.85 3.16
1485 1597 4.911390 ACCAAGAACTAGGTTCCATCAAG 58.089 43.478 6.77 0.00 42.85 3.02
1486 1598 4.993705 ACCAAGAACTAGGTTCCATCAA 57.006 40.909 6.77 0.00 42.85 2.57
1487 1599 4.993705 AACCAAGAACTAGGTTCCATCA 57.006 40.909 6.77 0.00 44.51 3.07
1488 1600 5.354513 GCTTAACCAAGAACTAGGTTCCATC 59.645 44.000 0.00 0.00 44.51 3.51
1489 1601 5.222048 TGCTTAACCAAGAACTAGGTTCCAT 60.222 40.000 0.00 0.00 44.51 3.41
1490 1602 4.103469 TGCTTAACCAAGAACTAGGTTCCA 59.897 41.667 0.00 0.00 44.51 3.53
1491 1603 4.648651 TGCTTAACCAAGAACTAGGTTCC 58.351 43.478 0.00 0.00 44.51 3.62
1492 1604 5.548406 TCTGCTTAACCAAGAACTAGGTTC 58.452 41.667 0.00 2.57 44.51 3.62
1523 1635 4.994852 TGAGCTAACACTGTCCAAATACAC 59.005 41.667 0.00 0.00 0.00 2.90
1524 1636 5.222079 TGAGCTAACACTGTCCAAATACA 57.778 39.130 0.00 0.00 0.00 2.29
1705 1817 3.006247 GAGTCAAAGGGAAGCTAAGCTG 58.994 50.000 0.00 0.00 39.62 4.24
1746 1858 9.061435 GTAATCCTCAAGCTAAGCTAATCAAAT 57.939 33.333 0.00 0.00 38.25 2.32
1755 1867 7.553881 TTGTTATGTAATCCTCAAGCTAAGC 57.446 36.000 0.00 0.00 0.00 3.09
1756 1868 9.774742 GTTTTGTTATGTAATCCTCAAGCTAAG 57.225 33.333 0.00 0.00 0.00 2.18
1780 1892 3.417069 TCATGGTCAACGAAGATGGTT 57.583 42.857 0.00 0.00 0.00 3.67
1786 1898 5.550232 TGAATGAATCATGGTCAACGAAG 57.450 39.130 0.00 0.00 31.50 3.79
1787 1899 4.142622 GCTGAATGAATCATGGTCAACGAA 60.143 41.667 0.00 0.00 37.44 3.85
1800 1912 4.141228 ACCCATCTCAGATGCTGAATGAAT 60.141 41.667 9.41 5.95 40.18 2.57
1803 1915 3.210232 ACCCATCTCAGATGCTGAATG 57.790 47.619 9.41 0.00 40.18 2.67
1829 1941 6.203723 CCTAATAAGCAGCTCTCAATAACCAC 59.796 42.308 0.00 0.00 0.00 4.16
1841 1953 5.736951 ATCGAATCTCCTAATAAGCAGCT 57.263 39.130 0.00 0.00 0.00 4.24
2077 2193 5.885912 GGTAGGCAGGATTTGTTATTCTGAA 59.114 40.000 0.00 0.00 0.00 3.02
2162 2278 1.934218 TCCACCCCATCCCCATAATT 58.066 50.000 0.00 0.00 0.00 1.40
2310 2446 1.745489 GCGCCTCCAACGGAAAGAT 60.745 57.895 0.00 0.00 0.00 2.40
2383 2520 2.163815 CGATGTACCTCGTGGAGAAAGT 59.836 50.000 11.17 0.00 37.04 2.66
2402 2539 4.974399 TCTATCATCTTAGCCTCAGACGA 58.026 43.478 0.00 0.00 0.00 4.20
2498 2635 4.743057 TCACCATTCTCATCTGTACAGG 57.257 45.455 22.48 7.88 0.00 4.00
2528 2665 0.042131 AACTATCCCCTCGACCACCA 59.958 55.000 0.00 0.00 0.00 4.17
2605 2742 3.559171 GGTCATTTGGTGGCAGACTCTAA 60.559 47.826 0.00 0.00 32.76 2.10
2623 2760 1.206132 CACTTGCCTACGGTATGGTCA 59.794 52.381 0.00 0.00 0.00 4.02
2631 2768 4.296265 GGAACCACTTGCCTACGG 57.704 61.111 0.00 0.00 0.00 4.02
2661 2798 4.899239 CTGAGGGCGTCGATGGGC 62.899 72.222 6.79 5.60 0.00 5.36
2668 2805 2.107953 GCCAGATCTGAGGGCGTC 59.892 66.667 24.62 0.00 38.04 5.19
2818 2955 1.225983 CATTCCCATACCGGTGCCA 59.774 57.895 19.93 0.00 0.00 4.92
3331 3468 5.118729 TCAAGTTTCAGACTTTGGGGTTA 57.881 39.130 0.00 0.00 46.34 2.85
3388 3525 4.000988 CCCAACATCAGTACTGTACAACC 58.999 47.826 21.99 0.00 0.00 3.77
3673 4046 5.112686 TGCCACTTAAATGTTTTGTGTTCC 58.887 37.500 0.00 0.00 0.00 3.62
3676 4049 4.119136 GCTGCCACTTAAATGTTTTGTGT 58.881 39.130 0.00 0.00 0.00 3.72
3717 4090 3.877508 GCTTTCCCAGTGGTATGTATGTC 59.122 47.826 8.74 0.00 0.00 3.06
3726 4099 2.269940 AGATACAGCTTTCCCAGTGGT 58.730 47.619 8.74 0.00 0.00 4.16
3729 4102 4.833390 GTGTTAGATACAGCTTTCCCAGT 58.167 43.478 0.00 0.00 37.45 4.00
3827 4200 6.015688 AGGACAATCTTAATAATGCATGCCAG 60.016 38.462 16.68 0.00 0.00 4.85
4116 8045 7.429340 GCACAAGTGAGCATACATACAAATAAC 59.571 37.037 4.04 0.00 0.00 1.89
4165 8094 7.548780 GCCCTATTTCAACAGAGATATCAGATC 59.451 40.741 5.32 0.00 0.00 2.75
4217 8152 3.177884 TGGCACAGAGGCTTGGGT 61.178 61.111 0.00 0.00 44.55 4.51
4341 8290 2.279935 AATGTAAAACAGGGCGGACA 57.720 45.000 0.00 0.00 0.00 4.02
4576 8527 0.596600 GCGTGGTCGAACTCAAGTCA 60.597 55.000 0.33 0.00 39.71 3.41
4694 8691 2.217038 TTCGAGAAGGTGCAGGCCT 61.217 57.895 0.00 0.00 41.41 5.19
4703 8700 2.434359 GGCCGTGGTTCGAGAAGG 60.434 66.667 0.00 0.00 42.86 3.46
4733 8730 0.320374 GGTGGATCTCAACACCGTGA 59.680 55.000 5.28 0.00 46.61 4.35
4907 9888 1.569479 GACGAGACACAAAGCCAGGC 61.569 60.000 1.84 1.84 0.00 4.85
4947 9946 1.967779 TCATCTTCGAAGGTGGTGTGA 59.032 47.619 32.40 19.19 37.73 3.58
4949 9948 1.276421 CCTCATCTTCGAAGGTGGTGT 59.724 52.381 32.40 8.10 37.73 4.16
4957 9956 3.264947 CATGCAGAACCTCATCTTCGAA 58.735 45.455 0.00 0.00 0.00 3.71
5058 10072 1.826024 GGTGGCTCGTCATCTGGAT 59.174 57.895 0.00 0.00 0.00 3.41
5143 10157 3.532155 GAGGAGTGCTCGCCCGAT 61.532 66.667 4.83 0.00 33.97 4.18
5317 10338 1.343465 GGCGCTCTAATTGCTAGGGTA 59.657 52.381 7.64 0.00 29.73 3.69
5327 10350 1.043673 AACGAGGGAGGCGCTCTAAT 61.044 55.000 7.64 0.00 40.57 1.73
5328 10351 1.681327 AACGAGGGAGGCGCTCTAA 60.681 57.895 7.64 0.00 40.57 2.10
5676 10759 0.477597 ACCTCCACCATTTCCCTCCA 60.478 55.000 0.00 0.00 0.00 3.86
5677 10760 0.704664 AACCTCCACCATTTCCCTCC 59.295 55.000 0.00 0.00 0.00 4.30
5678 10761 1.839424 CAACCTCCACCATTTCCCTC 58.161 55.000 0.00 0.00 0.00 4.30
5679 10762 0.251787 GCAACCTCCACCATTTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
5680 10763 1.257750 GGCAACCTCCACCATTTCCC 61.258 60.000 0.00 0.00 0.00 3.97
5681 10764 0.541764 TGGCAACCTCCACCATTTCC 60.542 55.000 0.00 0.00 0.00 3.13
5682 10765 3.050089 TGGCAACCTCCACCATTTC 57.950 52.632 0.00 0.00 0.00 2.17
6183 11284 1.200948 CTGAGCATGAGACAGTCGACA 59.799 52.381 19.50 6.07 0.00 4.35
6203 11304 4.493747 CCGCCCTCGACTTCGTCC 62.494 72.222 0.00 0.00 40.80 4.79
6756 11871 1.467734 GTCTGCAGCCTGAAATCACTG 59.532 52.381 9.47 0.00 0.00 3.66
6884 11999 1.737355 TTGCTTGCAGAACCAGGTGC 61.737 55.000 0.00 0.00 40.29 5.01
6952 12093 8.452534 TCTAAGTCTTCTAACTTCGAATGAGTC 58.547 37.037 0.00 0.00 40.01 3.36
7081 12231 2.481952 GGATTGCACAATCTAGGCGATC 59.518 50.000 19.74 8.79 44.90 3.69
7126 12276 8.117988 GCTTGTTTATTACGATCGGAAATGTAA 58.882 33.333 18.28 8.65 0.00 2.41
7161 12313 3.644966 ACCAGCGAGGGAATGAATAAA 57.355 42.857 3.26 0.00 43.89 1.40
7173 12325 1.217882 ACTGACGAAAAACCAGCGAG 58.782 50.000 0.00 0.00 0.00 5.03
7180 12332 8.157813 GGAAAAACAACTAAACTGACGAAAAAC 58.842 33.333 0.00 0.00 0.00 2.43
7207 12361 3.937814 AGTTAGATGAATTCGCCACACA 58.062 40.909 0.04 0.00 0.00 3.72
7572 12729 0.035439 GGAAAAGACGATGGGCCAGA 60.035 55.000 13.78 0.00 0.00 3.86
7580 12737 0.323629 TTCAGCGGGGAAAAGACGAT 59.676 50.000 0.00 0.00 0.00 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.