Multiple sequence alignment - TraesCS5D01G235500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G235500 chr5D 100.000 2273 0 0 1 2273 344447921 344445649 0.000000e+00 4198.0
1 TraesCS5D01G235500 chr5D 79.882 676 53 42 656 1275 344468168 344468816 3.490000e-113 418.0
2 TraesCS5D01G235500 chr5D 81.221 426 53 13 2 423 301585819 301585417 3.640000e-83 318.0
3 TraesCS5D01G235500 chr5D 77.612 201 34 8 1027 1217 452493814 452494013 6.640000e-21 111.0
4 TraesCS5D01G235500 chr5B 91.863 1020 63 10 656 1664 407622045 407623055 0.000000e+00 1406.0
5 TraesCS5D01G235500 chr5B 81.268 678 48 50 656 1276 407615605 407614950 2.040000e-130 475.0
6 TraesCS5D01G235500 chr5B 79.052 401 44 21 31 423 428133472 428133840 2.920000e-59 239.0
7 TraesCS5D01G235500 chr5A 86.049 982 102 10 1270 2221 448121645 448120669 0.000000e+00 1022.0
8 TraesCS5D01G235500 chr5A 86.746 928 48 30 416 1278 447630492 447631409 0.000000e+00 963.0
9 TraesCS5D01G235500 chr5A 93.617 282 9 2 1001 1276 447552007 447551729 1.620000e-111 412.0
10 TraesCS5D01G235500 chr5A 89.931 288 16 4 994 1275 447624436 447624156 2.150000e-95 359.0
11 TraesCS5D01G235500 chr5A 87.245 196 21 3 1343 1536 447631500 447631693 1.060000e-53 220.0
12 TraesCS5D01G235500 chr5A 87.245 196 21 3 1343 1536 447638541 447638734 1.060000e-53 220.0
13 TraesCS5D01G235500 chr5A 78.173 197 32 8 1014 1200 571425317 571425512 5.130000e-22 115.0
14 TraesCS5D01G235500 chr3B 83.777 413 53 7 2 410 615907505 615907907 1.650000e-101 379.0
15 TraesCS5D01G235500 chr3B 86.364 66 9 0 9 74 89478858 89478923 3.130000e-09 73.1
16 TraesCS5D01G235500 chr2D 77.878 443 65 22 1 430 553735698 553735276 6.270000e-61 244.0
17 TraesCS5D01G235500 chr2D 74.803 254 45 11 183 423 46329851 46329604 1.860000e-16 97.1
18 TraesCS5D01G235500 chr4B 87.255 204 21 5 209 410 594152429 594152229 6.320000e-56 228.0
19 TraesCS5D01G235500 chr3D 75.935 428 55 22 21 423 315468998 315468594 2.320000e-40 176.0
20 TraesCS5D01G235500 chr3A 76.098 410 56 25 1 400 564416739 564416362 2.320000e-40 176.0
21 TraesCS5D01G235500 chr7A 88.182 110 13 0 209 318 513889073 513889182 5.090000e-27 132.0
22 TraesCS5D01G235500 chr7A 77.434 226 31 14 195 406 243346352 243346133 1.430000e-22 117.0
23 TraesCS5D01G235500 chr2B 73.836 451 59 23 1 425 155053174 155052757 8.520000e-25 124.0
24 TraesCS5D01G235500 chr2B 76.847 203 20 13 2 201 19377977 19377799 3.110000e-14 89.8
25 TraesCS5D01G235500 chr2B 73.984 246 43 14 164 395 557772929 557772691 1.870000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G235500 chr5D 344445649 344447921 2272 True 4198.0 4198 100.0000 1 2273 1 chr5D.!!$R2 2272
1 TraesCS5D01G235500 chr5D 344468168 344468816 648 False 418.0 418 79.8820 656 1275 1 chr5D.!!$F1 619
2 TraesCS5D01G235500 chr5B 407622045 407623055 1010 False 1406.0 1406 91.8630 656 1664 1 chr5B.!!$F1 1008
3 TraesCS5D01G235500 chr5B 407614950 407615605 655 True 475.0 475 81.2680 656 1276 1 chr5B.!!$R1 620
4 TraesCS5D01G235500 chr5A 448120669 448121645 976 True 1022.0 1022 86.0490 1270 2221 1 chr5A.!!$R3 951
5 TraesCS5D01G235500 chr5A 447630492 447631693 1201 False 591.5 963 86.9955 416 1536 2 chr5A.!!$F3 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.042188 CCACGCTGATATTTTCGCCG 60.042 55.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2361 0.037447 AAGCAAAGCCCTCTGAGGAC 59.963 55.0 25.18 14.07 37.67 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.927782 GACGCACCACTGCCACCA 62.928 66.667 0.00 0.00 40.73 4.17
22 23 4.202574 CACCACTGCCACCACCCA 62.203 66.667 0.00 0.00 0.00 4.51
23 24 3.425014 ACCACTGCCACCACCCAA 61.425 61.111 0.00 0.00 0.00 4.12
24 25 2.123511 CCACTGCCACCACCCAAA 60.124 61.111 0.00 0.00 0.00 3.28
25 26 2.498056 CCACTGCCACCACCCAAAC 61.498 63.158 0.00 0.00 0.00 2.93
26 27 2.123468 ACTGCCACCACCCAAACC 60.123 61.111 0.00 0.00 0.00 3.27
27 28 2.198426 CTGCCACCACCCAAACCT 59.802 61.111 0.00 0.00 0.00 3.50
28 29 2.123511 TGCCACCACCCAAACCTG 60.124 61.111 0.00 0.00 0.00 4.00
29 30 2.123468 GCCACCACCCAAACCTGT 60.123 61.111 0.00 0.00 0.00 4.00
30 31 2.200337 GCCACCACCCAAACCTGTC 61.200 63.158 0.00 0.00 0.00 3.51
31 32 1.530655 CCACCACCCAAACCTGTCC 60.531 63.158 0.00 0.00 0.00 4.02
32 33 1.896660 CACCACCCAAACCTGTCCG 60.897 63.158 0.00 0.00 0.00 4.79
33 34 2.983592 CCACCCAAACCTGTCCGC 60.984 66.667 0.00 0.00 0.00 5.54
34 35 2.983592 CACCCAAACCTGTCCGCC 60.984 66.667 0.00 0.00 0.00 6.13
35 36 3.494254 ACCCAAACCTGTCCGCCA 61.494 61.111 0.00 0.00 0.00 5.69
36 37 2.203422 CCCAAACCTGTCCGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
37 38 2.268076 CCCAAACCTGTCCGCCAAG 61.268 63.158 0.00 0.00 0.00 3.61
38 39 2.268076 CCAAACCTGTCCGCCAAGG 61.268 63.158 0.00 0.00 42.97 3.61
39 40 2.597510 AAACCTGTCCGCCAAGGC 60.598 61.111 0.00 0.00 40.77 4.35
40 41 3.429372 AAACCTGTCCGCCAAGGCA 62.429 57.895 12.19 0.00 42.06 4.75
41 42 2.920076 AAACCTGTCCGCCAAGGCAA 62.920 55.000 12.19 0.00 42.06 4.52
42 43 3.365265 CCTGTCCGCCAAGGCAAC 61.365 66.667 12.19 9.06 42.06 4.17
43 44 3.365265 CTGTCCGCCAAGGCAACC 61.365 66.667 12.19 0.00 42.06 3.77
44 45 4.966787 TGTCCGCCAAGGCAACCC 62.967 66.667 12.19 0.00 42.06 4.11
45 46 4.966787 GTCCGCCAAGGCAACCCA 62.967 66.667 12.19 0.00 42.06 4.51
46 47 4.659172 TCCGCCAAGGCAACCCAG 62.659 66.667 12.19 0.00 42.06 4.45
50 51 4.619320 CCAAGGCAACCCAGGGCA 62.619 66.667 4.91 0.00 37.17 5.36
51 52 2.993264 CAAGGCAACCCAGGGCAG 60.993 66.667 4.91 0.00 37.17 4.85
52 53 4.305956 AAGGCAACCCAGGGCAGG 62.306 66.667 4.91 0.00 37.17 4.85
65 66 4.666253 GCAGGGGTGCAGCAAGGA 62.666 66.667 19.06 0.00 34.41 3.36
66 67 2.674380 CAGGGGTGCAGCAAGGAC 60.674 66.667 19.06 0.00 37.94 3.85
67 68 4.335647 AGGGGTGCAGCAAGGACG 62.336 66.667 19.06 0.00 39.86 4.79
68 69 4.643387 GGGGTGCAGCAAGGACGT 62.643 66.667 19.06 0.00 39.86 4.34
69 70 3.050275 GGGTGCAGCAAGGACGTC 61.050 66.667 19.06 7.13 39.86 4.34
70 71 3.414700 GGTGCAGCAAGGACGTCG 61.415 66.667 11.86 0.00 39.86 5.12
71 72 3.414700 GTGCAGCAAGGACGTCGG 61.415 66.667 9.92 2.71 0.00 4.79
84 85 3.479269 GTCGGCGGCGTGAAGAAG 61.479 66.667 31.06 0.00 0.00 2.85
85 86 4.735132 TCGGCGGCGTGAAGAAGG 62.735 66.667 31.06 0.00 0.00 3.46
86 87 4.735132 CGGCGGCGTGAAGAAGGA 62.735 66.667 24.74 0.00 0.00 3.36
87 88 2.815647 GGCGGCGTGAAGAAGGAG 60.816 66.667 9.37 0.00 0.00 3.69
88 89 2.815647 GCGGCGTGAAGAAGGAGG 60.816 66.667 9.37 0.00 0.00 4.30
89 90 2.657237 CGGCGTGAAGAAGGAGGT 59.343 61.111 0.00 0.00 0.00 3.85
90 91 1.738099 CGGCGTGAAGAAGGAGGTG 60.738 63.158 0.00 0.00 0.00 4.00
91 92 1.376037 GGCGTGAAGAAGGAGGTGG 60.376 63.158 0.00 0.00 0.00 4.61
92 93 1.671742 GCGTGAAGAAGGAGGTGGA 59.328 57.895 0.00 0.00 0.00 4.02
93 94 0.670854 GCGTGAAGAAGGAGGTGGAC 60.671 60.000 0.00 0.00 0.00 4.02
94 95 0.388649 CGTGAAGAAGGAGGTGGACG 60.389 60.000 0.00 0.00 0.00 4.79
95 96 0.966920 GTGAAGAAGGAGGTGGACGA 59.033 55.000 0.00 0.00 0.00 4.20
96 97 0.966920 TGAAGAAGGAGGTGGACGAC 59.033 55.000 0.00 0.00 0.00 4.34
97 98 0.109226 GAAGAAGGAGGTGGACGACG 60.109 60.000 0.00 0.00 0.00 5.12
98 99 2.126031 GAAGGAGGTGGACGACGC 60.126 66.667 0.00 0.00 0.00 5.19
118 119 4.380628 GCGACGTCGACGGTGACT 62.381 66.667 39.74 19.83 44.95 3.41
119 120 3.015293 GCGACGTCGACGGTGACTA 62.015 63.158 39.74 0.00 44.95 2.59
120 121 1.225583 CGACGTCGACGGTGACTAC 60.226 63.158 37.89 19.16 44.95 2.73
121 122 1.862123 GACGTCGACGGTGACTACA 59.138 57.895 37.89 0.00 44.95 2.74
122 123 0.179230 GACGTCGACGGTGACTACAG 60.179 60.000 37.89 10.35 44.95 2.74
123 124 1.511464 CGTCGACGGTGACTACAGC 60.511 63.158 29.70 0.00 40.59 4.40
129 130 4.187056 GGTGACTACAGCGCCTTC 57.813 61.111 2.29 0.00 34.87 3.46
130 131 1.805945 GGTGACTACAGCGCCTTCG 60.806 63.158 2.29 0.00 34.87 3.79
131 132 1.805945 GTGACTACAGCGCCTTCGG 60.806 63.158 2.29 0.00 35.95 4.30
132 133 2.886124 GACTACAGCGCCTTCGGC 60.886 66.667 2.29 0.00 46.75 5.54
141 142 4.148645 GCCTTCGGCGCGTTCTTC 62.149 66.667 8.43 0.00 39.62 2.87
142 143 3.838795 CCTTCGGCGCGTTCTTCG 61.839 66.667 8.43 4.81 43.12 3.79
143 144 3.103911 CTTCGGCGCGTTCTTCGT 61.104 61.111 8.43 0.00 42.13 3.85
144 145 3.055905 CTTCGGCGCGTTCTTCGTC 62.056 63.158 8.43 0.00 42.13 4.20
147 148 3.479269 GGCGCGTTCTTCGTCCTG 61.479 66.667 8.43 0.00 42.13 3.86
148 149 2.733593 GCGCGTTCTTCGTCCTGT 60.734 61.111 8.43 0.00 42.13 4.00
149 150 1.443194 GCGCGTTCTTCGTCCTGTA 60.443 57.895 8.43 0.00 42.13 2.74
150 151 1.403972 GCGCGTTCTTCGTCCTGTAG 61.404 60.000 8.43 0.00 42.13 2.74
151 152 0.797249 CGCGTTCTTCGTCCTGTAGG 60.797 60.000 0.00 0.00 42.13 3.18
152 153 0.524862 GCGTTCTTCGTCCTGTAGGA 59.475 55.000 0.00 0.00 42.13 2.94
153 154 1.467713 GCGTTCTTCGTCCTGTAGGAG 60.468 57.143 0.00 0.00 46.49 3.69
154 155 1.132643 CGTTCTTCGTCCTGTAGGAGG 59.867 57.143 13.13 13.13 46.49 4.30
155 156 1.477295 GTTCTTCGTCCTGTAGGAGGG 59.523 57.143 17.74 6.67 46.49 4.30
156 157 0.683504 TCTTCGTCCTGTAGGAGGGC 60.684 60.000 17.74 0.00 46.49 5.19
157 158 0.684805 CTTCGTCCTGTAGGAGGGCT 60.685 60.000 17.74 0.00 45.46 5.19
158 159 0.970937 TTCGTCCTGTAGGAGGGCTG 60.971 60.000 17.74 0.69 45.46 4.85
159 160 2.904131 GTCCTGTAGGAGGGCTGC 59.096 66.667 0.00 0.00 46.49 5.25
160 161 2.759973 TCCTGTAGGAGGGCTGCG 60.760 66.667 0.00 0.00 43.06 5.18
161 162 3.854669 CCTGTAGGAGGGCTGCGG 61.855 72.222 0.00 0.00 38.36 5.69
162 163 2.759973 CTGTAGGAGGGCTGCGGA 60.760 66.667 0.00 0.00 0.00 5.54
163 164 3.075005 TGTAGGAGGGCTGCGGAC 61.075 66.667 0.00 0.00 0.00 4.79
164 165 4.208686 GTAGGAGGGCTGCGGACG 62.209 72.222 0.00 0.00 0.00 4.79
178 179 4.789075 GACGGCGGCGCAGTAGAA 62.789 66.667 35.45 0.00 37.05 2.10
179 180 4.796231 ACGGCGGCGCAGTAGAAG 62.796 66.667 34.66 16.83 34.87 2.85
180 181 4.796231 CGGCGGCGCAGTAGAAGT 62.796 66.667 34.36 0.00 0.00 3.01
181 182 2.434359 GGCGGCGCAGTAGAAGTT 60.434 61.111 34.36 0.00 0.00 2.66
182 183 1.153706 GGCGGCGCAGTAGAAGTTA 60.154 57.895 34.36 0.00 0.00 2.24
183 184 0.529992 GGCGGCGCAGTAGAAGTTAT 60.530 55.000 34.36 0.00 0.00 1.89
184 185 0.577269 GCGGCGCAGTAGAAGTTATG 59.423 55.000 29.21 0.00 0.00 1.90
185 186 1.922570 CGGCGCAGTAGAAGTTATGT 58.077 50.000 10.83 0.00 0.00 2.29
186 187 2.268298 CGGCGCAGTAGAAGTTATGTT 58.732 47.619 10.83 0.00 0.00 2.71
187 188 2.671396 CGGCGCAGTAGAAGTTATGTTT 59.329 45.455 10.83 0.00 0.00 2.83
188 189 3.124636 CGGCGCAGTAGAAGTTATGTTTT 59.875 43.478 10.83 0.00 0.00 2.43
189 190 4.378046 CGGCGCAGTAGAAGTTATGTTTTT 60.378 41.667 10.83 0.00 0.00 1.94
244 245 6.926280 TGTACAAACATCAATGAAAATCGC 57.074 33.333 0.00 0.00 0.00 4.58
245 246 5.861251 TGTACAAACATCAATGAAAATCGCC 59.139 36.000 0.00 0.00 0.00 5.54
246 247 5.138125 ACAAACATCAATGAAAATCGCCT 57.862 34.783 0.00 0.00 0.00 5.52
247 248 6.266168 ACAAACATCAATGAAAATCGCCTA 57.734 33.333 0.00 0.00 0.00 3.93
248 249 6.324819 ACAAACATCAATGAAAATCGCCTAG 58.675 36.000 0.00 0.00 0.00 3.02
249 250 6.071952 ACAAACATCAATGAAAATCGCCTAGT 60.072 34.615 0.00 0.00 0.00 2.57
250 251 6.515272 AACATCAATGAAAATCGCCTAGTT 57.485 33.333 0.00 0.00 0.00 2.24
251 252 6.515272 ACATCAATGAAAATCGCCTAGTTT 57.485 33.333 0.00 0.00 0.00 2.66
252 253 6.324819 ACATCAATGAAAATCGCCTAGTTTG 58.675 36.000 0.00 0.00 0.00 2.93
253 254 6.150976 ACATCAATGAAAATCGCCTAGTTTGA 59.849 34.615 0.00 0.00 0.00 2.69
254 255 5.938322 TCAATGAAAATCGCCTAGTTTGAC 58.062 37.500 0.00 0.00 0.00 3.18
255 256 5.705441 TCAATGAAAATCGCCTAGTTTGACT 59.295 36.000 0.00 0.00 0.00 3.41
256 257 5.551760 ATGAAAATCGCCTAGTTTGACTG 57.448 39.130 0.00 0.00 0.00 3.51
257 258 4.637276 TGAAAATCGCCTAGTTTGACTGA 58.363 39.130 0.00 0.00 0.00 3.41
258 259 5.060506 TGAAAATCGCCTAGTTTGACTGAA 58.939 37.500 0.00 0.00 0.00 3.02
259 260 5.705441 TGAAAATCGCCTAGTTTGACTGAAT 59.295 36.000 0.00 0.00 0.00 2.57
260 261 6.876789 TGAAAATCGCCTAGTTTGACTGAATA 59.123 34.615 0.00 0.00 0.00 1.75
261 262 7.552687 TGAAAATCGCCTAGTTTGACTGAATAT 59.447 33.333 0.00 0.00 0.00 1.28
262 263 6.851222 AATCGCCTAGTTTGACTGAATATG 57.149 37.500 0.00 0.00 0.00 1.78
263 264 5.339008 TCGCCTAGTTTGACTGAATATGT 57.661 39.130 0.00 0.00 0.00 2.29
264 265 5.109210 TCGCCTAGTTTGACTGAATATGTG 58.891 41.667 0.00 0.00 0.00 3.21
265 266 4.870426 CGCCTAGTTTGACTGAATATGTGT 59.130 41.667 0.00 0.00 0.00 3.72
266 267 5.005779 CGCCTAGTTTGACTGAATATGTGTC 59.994 44.000 0.00 0.00 0.00 3.67
267 268 6.109359 GCCTAGTTTGACTGAATATGTGTCT 58.891 40.000 0.00 0.00 0.00 3.41
268 269 6.595716 GCCTAGTTTGACTGAATATGTGTCTT 59.404 38.462 0.00 0.00 0.00 3.01
269 270 7.413438 GCCTAGTTTGACTGAATATGTGTCTTG 60.413 40.741 0.00 0.00 0.00 3.02
270 271 7.604164 CCTAGTTTGACTGAATATGTGTCTTGT 59.396 37.037 0.00 0.00 0.00 3.16
271 272 7.807977 AGTTTGACTGAATATGTGTCTTGTT 57.192 32.000 0.00 0.00 0.00 2.83
272 273 8.225603 AGTTTGACTGAATATGTGTCTTGTTT 57.774 30.769 0.00 0.00 0.00 2.83
273 274 8.131100 AGTTTGACTGAATATGTGTCTTGTTTG 58.869 33.333 0.00 0.00 0.00 2.93
274 275 6.558771 TGACTGAATATGTGTCTTGTTTGG 57.441 37.500 0.00 0.00 0.00 3.28
275 276 5.048782 TGACTGAATATGTGTCTTGTTTGGC 60.049 40.000 0.00 0.00 0.00 4.52
276 277 4.218417 ACTGAATATGTGTCTTGTTTGGCC 59.782 41.667 0.00 0.00 0.00 5.36
277 278 3.190327 TGAATATGTGTCTTGTTTGGCCG 59.810 43.478 0.00 0.00 0.00 6.13
278 279 2.552599 TATGTGTCTTGTTTGGCCGA 57.447 45.000 0.00 0.00 0.00 5.54
279 280 1.238439 ATGTGTCTTGTTTGGCCGAG 58.762 50.000 0.00 0.00 0.00 4.63
280 281 0.107410 TGTGTCTTGTTTGGCCGAGT 60.107 50.000 0.00 0.00 0.00 4.18
281 282 1.021968 GTGTCTTGTTTGGCCGAGTT 58.978 50.000 0.00 0.00 0.00 3.01
282 283 1.404035 GTGTCTTGTTTGGCCGAGTTT 59.596 47.619 0.00 0.00 0.00 2.66
283 284 2.096248 TGTCTTGTTTGGCCGAGTTTT 58.904 42.857 0.00 0.00 0.00 2.43
284 285 2.494073 TGTCTTGTTTGGCCGAGTTTTT 59.506 40.909 0.00 0.00 0.00 1.94
311 312 0.603065 AAAAAGCGTCTGGATTGGGC 59.397 50.000 0.00 0.00 0.00 5.36
312 313 0.251341 AAAAGCGTCTGGATTGGGCT 60.251 50.000 0.00 0.00 35.01 5.19
313 314 0.251341 AAAGCGTCTGGATTGGGCTT 60.251 50.000 0.00 0.00 45.11 4.35
314 315 0.962356 AAGCGTCTGGATTGGGCTTG 60.962 55.000 0.00 0.00 41.93 4.01
315 316 2.409870 GCGTCTGGATTGGGCTTGG 61.410 63.158 0.00 0.00 0.00 3.61
316 317 1.750399 CGTCTGGATTGGGCTTGGG 60.750 63.158 0.00 0.00 0.00 4.12
317 318 1.380380 GTCTGGATTGGGCTTGGGG 60.380 63.158 0.00 0.00 0.00 4.96
318 319 2.761213 CTGGATTGGGCTTGGGGC 60.761 66.667 0.00 0.00 40.90 5.80
319 320 4.757355 TGGATTGGGCTTGGGGCG 62.757 66.667 0.00 0.00 42.94 6.13
353 354 3.941188 CCGCCCCCACGCTGATAT 61.941 66.667 0.00 0.00 0.00 1.63
354 355 2.111043 CGCCCCCACGCTGATATT 59.889 61.111 0.00 0.00 0.00 1.28
355 356 1.525995 CGCCCCCACGCTGATATTT 60.526 57.895 0.00 0.00 0.00 1.40
356 357 1.101049 CGCCCCCACGCTGATATTTT 61.101 55.000 0.00 0.00 0.00 1.82
357 358 0.668535 GCCCCCACGCTGATATTTTC 59.331 55.000 0.00 0.00 0.00 2.29
358 359 0.944386 CCCCCACGCTGATATTTTCG 59.056 55.000 0.00 0.00 0.00 3.46
359 360 0.307760 CCCCACGCTGATATTTTCGC 59.692 55.000 0.00 0.00 0.00 4.70
360 361 0.307760 CCCACGCTGATATTTTCGCC 59.692 55.000 0.00 0.00 0.00 5.54
361 362 0.042188 CCACGCTGATATTTTCGCCG 60.042 55.000 0.00 0.00 0.00 6.46
362 363 0.927537 CACGCTGATATTTTCGCCGA 59.072 50.000 0.00 0.00 0.00 5.54
363 364 0.928229 ACGCTGATATTTTCGCCGAC 59.072 50.000 0.00 0.00 0.00 4.79
364 365 0.111704 CGCTGATATTTTCGCCGACG 60.112 55.000 0.00 0.00 42.01 5.12
365 366 0.383124 GCTGATATTTTCGCCGACGC 60.383 55.000 0.00 0.00 39.84 5.19
384 385 4.195334 CCCCCAGGCAGCGCTATT 62.195 66.667 10.99 0.00 0.00 1.73
385 386 2.124151 CCCCAGGCAGCGCTATTT 60.124 61.111 10.99 0.00 0.00 1.40
386 387 2.484062 CCCCAGGCAGCGCTATTTG 61.484 63.158 10.99 8.48 0.00 2.32
387 388 1.451927 CCCAGGCAGCGCTATTTGA 60.452 57.895 10.99 0.00 0.00 2.69
388 389 1.442526 CCCAGGCAGCGCTATTTGAG 61.443 60.000 10.99 0.00 0.00 3.02
389 390 1.442526 CCAGGCAGCGCTATTTGAGG 61.443 60.000 10.99 3.78 0.00 3.86
390 391 1.821332 AGGCAGCGCTATTTGAGGC 60.821 57.895 10.99 9.43 0.00 4.70
391 392 2.718107 GCAGCGCTATTTGAGGCC 59.282 61.111 10.99 0.00 0.00 5.19
392 393 2.838974 GCAGCGCTATTTGAGGCCC 61.839 63.158 10.99 0.00 0.00 5.80
393 394 2.189499 CAGCGCTATTTGAGGCCCC 61.189 63.158 10.99 0.00 0.00 5.80
394 395 2.193248 GCGCTATTTGAGGCCCCT 59.807 61.111 0.00 0.00 0.00 4.79
395 396 2.189499 GCGCTATTTGAGGCCCCTG 61.189 63.158 0.00 0.00 0.00 4.45
396 397 1.526917 CGCTATTTGAGGCCCCTGG 60.527 63.158 0.00 0.00 0.00 4.45
397 398 1.152673 GCTATTTGAGGCCCCTGGG 60.153 63.158 5.50 5.50 38.57 4.45
419 420 4.473520 CGAACGGCCAGGGATGCT 62.474 66.667 2.24 0.00 0.00 3.79
420 421 2.514824 GAACGGCCAGGGATGCTC 60.515 66.667 2.24 0.00 0.00 4.26
421 422 3.011517 AACGGCCAGGGATGCTCT 61.012 61.111 2.24 0.00 0.00 4.09
422 423 1.686325 GAACGGCCAGGGATGCTCTA 61.686 60.000 2.24 0.00 0.00 2.43
423 424 1.690219 AACGGCCAGGGATGCTCTAG 61.690 60.000 2.24 0.00 0.00 2.43
424 425 1.834378 CGGCCAGGGATGCTCTAGA 60.834 63.158 2.24 0.00 0.00 2.43
425 426 1.751563 GGCCAGGGATGCTCTAGAC 59.248 63.158 0.00 0.00 0.00 2.59
462 463 3.612860 GTCATGTTCGATTCAGCTAACGT 59.387 43.478 0.00 0.00 0.00 3.99
476 477 5.237561 TCAGCTAACGTTGCTTGTCAAATTA 59.762 36.000 18.47 0.00 38.92 1.40
543 547 9.847224 AATAATCAATACGTTTACCCTCATCTT 57.153 29.630 0.00 0.00 0.00 2.40
568 572 6.151985 TGAAAAATGACCTACGTATTGCCAAT 59.848 34.615 0.00 0.00 0.00 3.16
611 628 7.099764 AGTGAGGCTCCGTCATATAAATAATG 58.900 38.462 12.86 0.00 0.00 1.90
612 629 5.874810 TGAGGCTCCGTCATATAAATAATGC 59.125 40.000 12.86 0.00 0.00 3.56
613 630 6.054860 AGGCTCCGTCATATAAATAATGCT 57.945 37.500 0.00 0.00 0.00 3.79
614 631 7.093509 TGAGGCTCCGTCATATAAATAATGCTA 60.094 37.037 12.86 0.00 0.00 3.49
615 632 7.042335 AGGCTCCGTCATATAAATAATGCTAC 58.958 38.462 0.00 0.00 0.00 3.58
616 633 7.042335 GGCTCCGTCATATAAATAATGCTACT 58.958 38.462 0.00 0.00 0.00 2.57
617 634 8.195436 GGCTCCGTCATATAAATAATGCTACTA 58.805 37.037 0.00 0.00 0.00 1.82
618 635 9.751542 GCTCCGTCATATAAATAATGCTACTAT 57.248 33.333 0.00 0.00 0.00 2.12
850 905 2.045926 CCCCGGCAGAGGTCAAAG 60.046 66.667 0.00 0.00 0.00 2.77
860 915 2.357034 GGTCAAAGCGGCGTCTCA 60.357 61.111 9.37 0.00 0.00 3.27
863 923 2.357517 CAAAGCGGCGTCTCACCT 60.358 61.111 9.37 0.00 0.00 4.00
871 931 3.057456 AGCGGCGTCTCACCTTTATATAG 60.057 47.826 9.37 0.00 0.00 1.31
905 968 1.302511 CCCGACCTCCCAAACACAG 60.303 63.158 0.00 0.00 0.00 3.66
922 989 3.176708 CACAGCAAGCAAGCAACATATC 58.823 45.455 3.19 0.00 36.85 1.63
925 992 2.426024 AGCAAGCAAGCAACATATCCTG 59.574 45.455 3.19 0.00 36.85 3.86
928 995 3.091633 AGCAAGCAACATATCCTGGTT 57.908 42.857 0.00 0.00 33.70 3.67
932 999 4.640201 GCAAGCAACATATCCTGGTTAGAA 59.360 41.667 0.00 0.00 32.27 2.10
933 1000 5.449177 GCAAGCAACATATCCTGGTTAGAAC 60.449 44.000 0.00 0.00 32.27 3.01
960 1053 3.458118 TCTCAGGGAAGAAACTTGGTGAA 59.542 43.478 0.00 0.00 0.00 3.18
962 1055 4.803452 TCAGGGAAGAAACTTGGTGAATT 58.197 39.130 0.00 0.00 0.00 2.17
968 1062 3.628017 AGAAACTTGGTGAATTTTCGCG 58.372 40.909 0.00 0.00 36.39 5.87
1278 1404 5.513094 CCACCAGAAGAAGGATTAGTTGACA 60.513 44.000 0.00 0.00 0.00 3.58
1313 1467 1.763200 TACTGTCTAGCGAGCGAGCG 61.763 60.000 0.22 0.00 43.00 5.03
1406 1567 4.280677 TCTTTGGTGGTTCATTGATTGGTC 59.719 41.667 0.00 0.00 0.00 4.02
1469 1632 4.615121 CGTTTTGGATTGTACAAATGACCG 59.385 41.667 13.23 5.83 37.62 4.79
1482 1645 4.154195 ACAAATGACCGTCTAAGATTGTGC 59.846 41.667 0.00 0.00 0.00 4.57
1517 1680 2.609459 CAGTCGTGCTTCTGTTTTGAGT 59.391 45.455 0.00 0.00 0.00 3.41
1538 1724 3.993081 GTGGAGACTTGTGATGAACAGAG 59.007 47.826 0.00 0.00 40.74 3.35
1645 1831 4.009675 CCTCTTCCATGAAAATTCGGTGA 58.990 43.478 0.00 0.00 0.00 4.02
1649 1835 5.945784 TCTTCCATGAAAATTCGGTGAAGAT 59.054 36.000 12.85 0.00 0.00 2.40
1664 1850 5.447818 CGGTGAAGATTTTGAGGCATAGTTC 60.448 44.000 0.00 0.00 0.00 3.01
1665 1851 5.415701 GGTGAAGATTTTGAGGCATAGTTCA 59.584 40.000 0.00 0.00 0.00 3.18
1694 1880 1.366366 CCGGGAGACACGAGTTTGT 59.634 57.895 0.00 0.00 0.00 2.83
1700 1886 2.224113 GGAGACACGAGTTTGTTGGGTA 60.224 50.000 0.00 0.00 0.00 3.69
1705 1891 1.345415 ACGAGTTTGTTGGGTATCGGT 59.655 47.619 0.00 0.00 34.63 4.69
1712 1898 3.899052 TGTTGGGTATCGGTTCTTAGG 57.101 47.619 0.00 0.00 0.00 2.69
1740 1926 1.658994 TTGTTGTGGTTCGGTCACTC 58.341 50.000 0.00 0.00 36.21 3.51
1741 1927 0.528901 TGTTGTGGTTCGGTCACTCG 60.529 55.000 0.00 0.00 36.21 4.18
1764 1950 3.243873 TGTGCTTCTCTTCGATGACAAGT 60.244 43.478 14.73 0.00 0.00 3.16
1773 1959 0.955428 CGATGACAAGTGTGTGGGGG 60.955 60.000 0.00 0.00 38.41 5.40
1787 1973 2.597510 GGGGGTCCAACAGTGCAC 60.598 66.667 9.40 9.40 0.00 4.57
1791 1977 1.600916 GGTCCAACAGTGCACTCCC 60.601 63.158 18.64 6.42 0.00 4.30
1805 1991 1.528309 CTCCCGGTGCTTTGTTGGT 60.528 57.895 0.00 0.00 0.00 3.67
1847 2033 0.742505 TTAGCCGACCTGTATGACGG 59.257 55.000 0.00 0.00 46.74 4.79
1851 2037 1.942586 GCCGACCTGTATGACGGTTTT 60.943 52.381 0.00 0.00 45.91 2.43
1863 2049 5.733620 ATGACGGTTTTCTCTACACCTTA 57.266 39.130 0.00 0.00 0.00 2.69
1865 2051 5.475719 TGACGGTTTTCTCTACACCTTATG 58.524 41.667 0.00 0.00 0.00 1.90
1883 2069 4.939368 TTGTTCGGCCGTGTGGGG 62.939 66.667 27.15 0.00 35.78 4.96
1893 2079 0.320771 CCGTGTGGGGAGAAAGTCTG 60.321 60.000 0.00 0.00 0.00 3.51
1896 2082 2.675317 CGTGTGGGGAGAAAGTCTGATC 60.675 54.545 0.00 0.00 0.00 2.92
1900 2086 3.198635 GTGGGGAGAAAGTCTGATCATGA 59.801 47.826 0.00 0.00 0.00 3.07
1933 2119 2.752903 GAGTTACCGCCATGAATTTGGT 59.247 45.455 0.00 0.00 39.11 3.67
1939 2125 1.560505 GCCATGAATTTGGTGAGGGT 58.439 50.000 0.00 0.00 39.11 4.34
1945 2131 2.697751 TGAATTTGGTGAGGGTTGGTTG 59.302 45.455 0.00 0.00 0.00 3.77
1950 2136 1.603739 GTGAGGGTTGGTTGGCCTC 60.604 63.158 3.32 0.00 35.27 4.70
2021 2207 6.041865 TCACACCATTCTTTGATTGATTGGTT 59.958 34.615 7.35 0.04 42.64 3.67
2029 2215 9.617523 ATTCTTTGATTGATTGGTTTGTTCTTT 57.382 25.926 0.00 0.00 0.00 2.52
2038 2224 7.334090 TGATTGGTTTGTTCTTTTTGGATTGA 58.666 30.769 0.00 0.00 0.00 2.57
2040 2226 8.750515 ATTGGTTTGTTCTTTTTGGATTGATT 57.249 26.923 0.00 0.00 0.00 2.57
2051 2237 9.221933 TCTTTTTGGATTGATTTGATTGATTGG 57.778 29.630 0.00 0.00 0.00 3.16
2056 2242 8.550710 TGGATTGATTTGATTGATTGGTTTTC 57.449 30.769 0.00 0.00 0.00 2.29
2088 2274 9.216117 GGATTGGATATGTAAATTACGTAAGCT 57.784 33.333 14.25 5.73 45.62 3.74
2114 2300 5.411781 AGATTACAATGACAACTCGAGGTC 58.588 41.667 18.41 15.36 34.63 3.85
2124 2310 1.938585 ACTCGAGGTCAAGATGGGAA 58.061 50.000 18.41 0.00 0.00 3.97
2127 2313 2.432146 CTCGAGGTCAAGATGGGAATCA 59.568 50.000 3.91 0.00 0.00 2.57
2129 2315 2.555199 GAGGTCAAGATGGGAATCACG 58.445 52.381 0.00 0.00 0.00 4.35
2140 2326 1.202348 GGGAATCACGAAGGCAAAAGG 59.798 52.381 0.00 0.00 0.00 3.11
2163 2349 3.059982 CCGTCACCAGCTTCTCCA 58.940 61.111 0.00 0.00 0.00 3.86
2175 2361 2.564553 CTTCTCCAACCCTCTCGCCG 62.565 65.000 0.00 0.00 0.00 6.46
2178 2364 4.452733 CCAACCCTCTCGCCGTCC 62.453 72.222 0.00 0.00 0.00 4.79
2179 2365 3.382832 CAACCCTCTCGCCGTCCT 61.383 66.667 0.00 0.00 0.00 3.85
2190 2376 3.393360 CCGTCCTCAGAGGGCTTT 58.607 61.111 19.29 0.00 38.01 3.51
2192 2378 1.743252 CGTCCTCAGAGGGCTTTGC 60.743 63.158 19.29 1.58 38.01 3.68
2207 2393 1.209898 TTGCTTGGCAAATCTCGCG 59.790 52.632 0.00 0.00 45.96 5.87
2210 2396 1.226211 CTTGGCAAATCTCGCGCAG 60.226 57.895 8.75 4.17 0.00 5.18
2211 2397 1.915614 CTTGGCAAATCTCGCGCAGT 61.916 55.000 8.75 0.00 0.00 4.40
2221 2407 2.423517 CGCGCAGTGACAACAACG 60.424 61.111 8.75 0.00 43.07 4.10
2222 2408 2.707039 GCGCAGTGACAACAACGT 59.293 55.556 0.30 0.00 31.64 3.99
2223 2409 1.367665 GCGCAGTGACAACAACGTC 60.368 57.895 0.30 0.00 36.40 4.34
2224 2410 1.084290 CGCAGTGACAACAACGTCG 60.084 57.895 0.00 0.00 38.84 5.12
2225 2411 1.748647 CGCAGTGACAACAACGTCGT 61.749 55.000 0.00 0.00 38.84 4.34
2226 2412 0.043310 GCAGTGACAACAACGTCGTC 60.043 55.000 0.00 0.00 38.84 4.20
2227 2413 0.575390 CAGTGACAACAACGTCGTCC 59.425 55.000 0.00 0.00 38.84 4.79
2228 2414 0.173935 AGTGACAACAACGTCGTCCA 59.826 50.000 0.00 0.00 38.84 4.02
2229 2415 1.000884 GTGACAACAACGTCGTCCAA 58.999 50.000 0.00 0.00 38.84 3.53
2230 2416 1.595794 GTGACAACAACGTCGTCCAAT 59.404 47.619 0.00 0.00 38.84 3.16
2231 2417 1.862201 TGACAACAACGTCGTCCAATC 59.138 47.619 0.00 0.00 38.84 2.67
2232 2418 1.193874 GACAACAACGTCGTCCAATCC 59.806 52.381 0.00 0.00 0.00 3.01
2233 2419 0.515564 CAACAACGTCGTCCAATCCC 59.484 55.000 0.00 0.00 0.00 3.85
2234 2420 0.107081 AACAACGTCGTCCAATCCCA 59.893 50.000 0.00 0.00 0.00 4.37
2235 2421 0.323629 ACAACGTCGTCCAATCCCAT 59.676 50.000 0.00 0.00 0.00 4.00
2236 2422 0.726827 CAACGTCGTCCAATCCCATG 59.273 55.000 0.00 0.00 0.00 3.66
2237 2423 1.024579 AACGTCGTCCAATCCCATGC 61.025 55.000 0.00 0.00 0.00 4.06
2238 2424 2.180204 CGTCGTCCAATCCCATGCC 61.180 63.158 0.00 0.00 0.00 4.40
2239 2425 1.823899 GTCGTCCAATCCCATGCCC 60.824 63.158 0.00 0.00 0.00 5.36
2240 2426 2.275089 CGTCCAATCCCATGCCCA 59.725 61.111 0.00 0.00 0.00 5.36
2241 2427 2.120909 CGTCCAATCCCATGCCCAC 61.121 63.158 0.00 0.00 0.00 4.61
2242 2428 1.758122 GTCCAATCCCATGCCCACC 60.758 63.158 0.00 0.00 0.00 4.61
2243 2429 2.444517 CCAATCCCATGCCCACCC 60.445 66.667 0.00 0.00 0.00 4.61
2244 2430 2.363760 CAATCCCATGCCCACCCA 59.636 61.111 0.00 0.00 0.00 4.51
2245 2431 2.059786 CAATCCCATGCCCACCCAC 61.060 63.158 0.00 0.00 0.00 4.61
2246 2432 3.660422 AATCCCATGCCCACCCACG 62.660 63.158 0.00 0.00 0.00 4.94
2248 2434 4.358841 CCCATGCCCACCCACGAA 62.359 66.667 0.00 0.00 0.00 3.85
2249 2435 2.282816 CCATGCCCACCCACGAAA 60.283 61.111 0.00 0.00 0.00 3.46
2250 2436 1.682005 CCATGCCCACCCACGAAAT 60.682 57.895 0.00 0.00 0.00 2.17
2251 2437 1.512230 CATGCCCACCCACGAAATG 59.488 57.895 0.00 0.00 0.00 2.32
2252 2438 2.350458 ATGCCCACCCACGAAATGC 61.350 57.895 0.00 0.00 0.00 3.56
2253 2439 3.758931 GCCCACCCACGAAATGCC 61.759 66.667 0.00 0.00 0.00 4.40
2254 2440 3.068064 CCCACCCACGAAATGCCC 61.068 66.667 0.00 0.00 0.00 5.36
2255 2441 2.035626 CCACCCACGAAATGCCCT 59.964 61.111 0.00 0.00 0.00 5.19
2256 2442 2.046285 CCACCCACGAAATGCCCTC 61.046 63.158 0.00 0.00 0.00 4.30
2257 2443 1.303236 CACCCACGAAATGCCCTCA 60.303 57.895 0.00 0.00 0.00 3.86
2258 2444 0.893270 CACCCACGAAATGCCCTCAA 60.893 55.000 0.00 0.00 0.00 3.02
2259 2445 0.893727 ACCCACGAAATGCCCTCAAC 60.894 55.000 0.00 0.00 0.00 3.18
2260 2446 1.595093 CCCACGAAATGCCCTCAACC 61.595 60.000 0.00 0.00 0.00 3.77
2261 2447 0.893270 CCACGAAATGCCCTCAACCA 60.893 55.000 0.00 0.00 0.00 3.67
2262 2448 1.176527 CACGAAATGCCCTCAACCAT 58.823 50.000 0.00 0.00 0.00 3.55
2263 2449 1.545582 CACGAAATGCCCTCAACCATT 59.454 47.619 0.00 0.00 33.35 3.16
2264 2450 2.752354 CACGAAATGCCCTCAACCATTA 59.248 45.455 0.00 0.00 31.82 1.90
2265 2451 3.016736 ACGAAATGCCCTCAACCATTAG 58.983 45.455 0.00 0.00 31.82 1.73
2266 2452 3.278574 CGAAATGCCCTCAACCATTAGA 58.721 45.455 0.00 0.00 31.82 2.10
2267 2453 3.694072 CGAAATGCCCTCAACCATTAGAA 59.306 43.478 0.00 0.00 31.82 2.10
2268 2454 4.438744 CGAAATGCCCTCAACCATTAGAAC 60.439 45.833 0.00 0.00 31.82 3.01
2269 2455 2.507407 TGCCCTCAACCATTAGAACC 57.493 50.000 0.00 0.00 0.00 3.62
2270 2456 1.339631 TGCCCTCAACCATTAGAACCG 60.340 52.381 0.00 0.00 0.00 4.44
2271 2457 1.339727 GCCCTCAACCATTAGAACCGT 60.340 52.381 0.00 0.00 0.00 4.83
2272 2458 2.629051 CCCTCAACCATTAGAACCGTC 58.371 52.381 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.730028 TTGGGTGGTGGCAGTGGTG 62.730 63.158 0.00 0.00 0.00 4.17
7 8 2.123511 TTTGGGTGGTGGCAGTGG 60.124 61.111 0.00 0.00 0.00 4.00
8 9 2.498056 GGTTTGGGTGGTGGCAGTG 61.498 63.158 0.00 0.00 0.00 3.66
9 10 2.123468 GGTTTGGGTGGTGGCAGT 60.123 61.111 0.00 0.00 0.00 4.40
10 11 2.198426 AGGTTTGGGTGGTGGCAG 59.802 61.111 0.00 0.00 0.00 4.85
11 12 2.123511 CAGGTTTGGGTGGTGGCA 60.124 61.111 0.00 0.00 0.00 4.92
12 13 2.123468 ACAGGTTTGGGTGGTGGC 60.123 61.111 0.00 0.00 0.00 5.01
13 14 1.530655 GGACAGGTTTGGGTGGTGG 60.531 63.158 0.00 0.00 0.00 4.61
14 15 1.896660 CGGACAGGTTTGGGTGGTG 60.897 63.158 0.00 0.00 0.00 4.17
15 16 2.513895 CGGACAGGTTTGGGTGGT 59.486 61.111 0.00 0.00 0.00 4.16
16 17 2.983592 GCGGACAGGTTTGGGTGG 60.984 66.667 0.00 0.00 0.00 4.61
17 18 2.983592 GGCGGACAGGTTTGGGTG 60.984 66.667 0.00 0.00 0.00 4.61
18 19 2.976494 CTTGGCGGACAGGTTTGGGT 62.976 60.000 0.00 0.00 0.00 4.51
19 20 2.203422 TTGGCGGACAGGTTTGGG 60.203 61.111 0.00 0.00 0.00 4.12
20 21 2.268076 CCTTGGCGGACAGGTTTGG 61.268 63.158 0.00 0.00 33.16 3.28
21 22 2.919494 GCCTTGGCGGACAGGTTTG 61.919 63.158 0.00 0.00 33.16 2.93
22 23 2.597510 GCCTTGGCGGACAGGTTT 60.598 61.111 0.00 0.00 33.16 3.27
23 24 3.429372 TTGCCTTGGCGGACAGGTT 62.429 57.895 7.18 0.00 33.16 3.50
24 25 3.884774 TTGCCTTGGCGGACAGGT 61.885 61.111 7.18 0.00 33.16 4.00
25 26 3.365265 GTTGCCTTGGCGGACAGG 61.365 66.667 7.18 0.00 33.16 4.00
26 27 3.365265 GGTTGCCTTGGCGGACAG 61.365 66.667 16.07 0.00 33.16 3.51
27 28 4.966787 GGGTTGCCTTGGCGGACA 62.967 66.667 16.07 0.00 33.16 4.02
28 29 4.966787 TGGGTTGCCTTGGCGGAC 62.967 66.667 7.18 8.09 33.16 4.79
29 30 4.659172 CTGGGTTGCCTTGGCGGA 62.659 66.667 7.18 0.00 33.16 5.54
33 34 4.619320 TGCCCTGGGTTGCCTTGG 62.619 66.667 15.56 0.00 0.00 3.61
34 35 2.993264 CTGCCCTGGGTTGCCTTG 60.993 66.667 15.56 0.00 0.00 3.61
35 36 4.305956 CCTGCCCTGGGTTGCCTT 62.306 66.667 15.56 0.00 0.00 4.35
48 49 4.666253 TCCTTGCTGCACCCCTGC 62.666 66.667 0.00 0.00 44.52 4.85
49 50 2.674380 GTCCTTGCTGCACCCCTG 60.674 66.667 0.00 0.00 0.00 4.45
50 51 4.335647 CGTCCTTGCTGCACCCCT 62.336 66.667 0.00 0.00 0.00 4.79
51 52 4.643387 ACGTCCTTGCTGCACCCC 62.643 66.667 0.00 0.00 0.00 4.95
52 53 3.050275 GACGTCCTTGCTGCACCC 61.050 66.667 3.51 0.00 0.00 4.61
53 54 3.414700 CGACGTCCTTGCTGCACC 61.415 66.667 10.58 0.00 0.00 5.01
54 55 3.414700 CCGACGTCCTTGCTGCAC 61.415 66.667 10.58 0.00 0.00 4.57
67 68 3.479269 CTTCTTCACGCCGCCGAC 61.479 66.667 0.00 0.00 38.29 4.79
68 69 4.735132 CCTTCTTCACGCCGCCGA 62.735 66.667 0.00 0.00 38.29 5.54
69 70 4.735132 TCCTTCTTCACGCCGCCG 62.735 66.667 0.00 0.00 41.14 6.46
70 71 2.815647 CTCCTTCTTCACGCCGCC 60.816 66.667 0.00 0.00 0.00 6.13
71 72 2.815647 CCTCCTTCTTCACGCCGC 60.816 66.667 0.00 0.00 0.00 6.53
72 73 1.738099 CACCTCCTTCTTCACGCCG 60.738 63.158 0.00 0.00 0.00 6.46
73 74 1.376037 CCACCTCCTTCTTCACGCC 60.376 63.158 0.00 0.00 0.00 5.68
74 75 0.670854 GTCCACCTCCTTCTTCACGC 60.671 60.000 0.00 0.00 0.00 5.34
75 76 0.388649 CGTCCACCTCCTTCTTCACG 60.389 60.000 0.00 0.00 0.00 4.35
76 77 0.966920 TCGTCCACCTCCTTCTTCAC 59.033 55.000 0.00 0.00 0.00 3.18
77 78 0.966920 GTCGTCCACCTCCTTCTTCA 59.033 55.000 0.00 0.00 0.00 3.02
78 79 0.109226 CGTCGTCCACCTCCTTCTTC 60.109 60.000 0.00 0.00 0.00 2.87
79 80 1.965219 CGTCGTCCACCTCCTTCTT 59.035 57.895 0.00 0.00 0.00 2.52
80 81 2.637383 GCGTCGTCCACCTCCTTCT 61.637 63.158 0.00 0.00 0.00 2.85
81 82 2.126031 GCGTCGTCCACCTCCTTC 60.126 66.667 0.00 0.00 0.00 3.46
82 83 3.692406 GGCGTCGTCCACCTCCTT 61.692 66.667 0.00 0.00 0.00 3.36
101 102 3.015293 TAGTCACCGTCGACGTCGC 62.015 63.158 33.49 24.34 40.98 5.19
102 103 1.225583 GTAGTCACCGTCGACGTCG 60.226 63.158 33.49 31.30 40.98 5.12
103 104 0.179230 CTGTAGTCACCGTCGACGTC 60.179 60.000 33.49 20.67 40.98 4.34
104 105 1.864862 CTGTAGTCACCGTCGACGT 59.135 57.895 33.49 20.15 40.98 4.34
105 106 1.511464 GCTGTAGTCACCGTCGACG 60.511 63.158 30.33 30.33 40.98 5.12
106 107 1.511464 CGCTGTAGTCACCGTCGAC 60.511 63.158 5.18 5.18 36.08 4.20
107 108 2.865308 CGCTGTAGTCACCGTCGA 59.135 61.111 0.00 0.00 0.00 4.20
108 109 2.874780 GCGCTGTAGTCACCGTCG 60.875 66.667 0.00 0.00 0.00 5.12
109 110 2.488087 AAGGCGCTGTAGTCACCGTC 62.488 60.000 7.64 0.00 0.00 4.79
110 111 2.488087 GAAGGCGCTGTAGTCACCGT 62.488 60.000 7.64 0.00 0.00 4.83
111 112 1.805945 GAAGGCGCTGTAGTCACCG 60.806 63.158 7.64 0.00 0.00 4.94
112 113 1.805945 CGAAGGCGCTGTAGTCACC 60.806 63.158 7.64 0.00 0.00 4.02
113 114 1.805945 CCGAAGGCGCTGTAGTCAC 60.806 63.158 7.64 0.00 46.14 3.67
114 115 2.571757 CCGAAGGCGCTGTAGTCA 59.428 61.111 7.64 0.00 46.14 3.41
125 126 3.838795 CGAAGAACGCGCCGAAGG 61.839 66.667 5.73 0.00 43.82 3.46
126 127 3.055905 GACGAAGAACGCGCCGAAG 62.056 63.158 5.73 0.00 46.94 3.79
127 128 3.101428 GACGAAGAACGCGCCGAA 61.101 61.111 5.73 0.00 46.94 4.30
130 131 2.807631 TACAGGACGAAGAACGCGCC 62.808 60.000 5.73 0.00 46.94 6.53
131 132 1.403972 CTACAGGACGAAGAACGCGC 61.404 60.000 5.73 0.00 46.94 6.86
132 133 0.797249 CCTACAGGACGAAGAACGCG 60.797 60.000 3.53 3.53 46.94 6.01
133 134 0.524862 TCCTACAGGACGAAGAACGC 59.475 55.000 0.00 0.00 46.94 4.84
144 145 3.854669 CCGCAGCCCTCCTACAGG 61.855 72.222 0.00 0.00 43.01 4.00
145 146 2.759973 TCCGCAGCCCTCCTACAG 60.760 66.667 0.00 0.00 0.00 2.74
146 147 3.075005 GTCCGCAGCCCTCCTACA 61.075 66.667 0.00 0.00 0.00 2.74
147 148 4.208686 CGTCCGCAGCCCTCCTAC 62.209 72.222 0.00 0.00 0.00 3.18
161 162 4.789075 TTCTACTGCGCCGCCGTC 62.789 66.667 10.00 0.00 36.67 4.79
162 163 4.796231 CTTCTACTGCGCCGCCGT 62.796 66.667 11.61 11.61 36.67 5.68
163 164 2.877360 TAACTTCTACTGCGCCGCCG 62.877 60.000 6.63 1.61 37.57 6.46
164 165 0.529992 ATAACTTCTACTGCGCCGCC 60.530 55.000 6.63 0.00 0.00 6.13
165 166 0.577269 CATAACTTCTACTGCGCCGC 59.423 55.000 4.18 0.00 0.00 6.53
166 167 1.922570 ACATAACTTCTACTGCGCCG 58.077 50.000 4.18 0.00 0.00 6.46
167 168 4.680171 AAAACATAACTTCTACTGCGCC 57.320 40.909 4.18 0.00 0.00 6.53
218 219 9.071221 GCGATTTTCATTGATGTTTGTACATAA 57.929 29.630 0.00 0.00 44.90 1.90
219 220 7.700234 GGCGATTTTCATTGATGTTTGTACATA 59.300 33.333 0.00 0.00 44.90 2.29
221 222 5.861251 GGCGATTTTCATTGATGTTTGTACA 59.139 36.000 0.00 0.00 38.95 2.90
222 223 6.092748 AGGCGATTTTCATTGATGTTTGTAC 58.907 36.000 0.00 0.00 0.00 2.90
223 224 6.266168 AGGCGATTTTCATTGATGTTTGTA 57.734 33.333 0.00 0.00 0.00 2.41
224 225 5.138125 AGGCGATTTTCATTGATGTTTGT 57.862 34.783 0.00 0.00 0.00 2.83
225 226 6.324819 ACTAGGCGATTTTCATTGATGTTTG 58.675 36.000 0.00 0.00 0.00 2.93
226 227 6.515272 ACTAGGCGATTTTCATTGATGTTT 57.485 33.333 0.00 0.00 0.00 2.83
227 228 6.515272 AACTAGGCGATTTTCATTGATGTT 57.485 33.333 0.00 0.00 0.00 2.71
228 229 6.150976 TCAAACTAGGCGATTTTCATTGATGT 59.849 34.615 0.00 0.00 0.00 3.06
229 230 6.470235 GTCAAACTAGGCGATTTTCATTGATG 59.530 38.462 0.00 0.00 0.00 3.07
230 231 6.375455 AGTCAAACTAGGCGATTTTCATTGAT 59.625 34.615 0.00 0.00 0.00 2.57
231 232 5.705441 AGTCAAACTAGGCGATTTTCATTGA 59.295 36.000 0.00 0.00 0.00 2.57
232 233 5.796935 CAGTCAAACTAGGCGATTTTCATTG 59.203 40.000 0.00 0.00 0.00 2.82
233 234 5.705441 TCAGTCAAACTAGGCGATTTTCATT 59.295 36.000 0.00 0.00 0.00 2.57
234 235 5.245531 TCAGTCAAACTAGGCGATTTTCAT 58.754 37.500 0.00 0.00 0.00 2.57
235 236 4.637276 TCAGTCAAACTAGGCGATTTTCA 58.363 39.130 0.00 0.00 0.00 2.69
236 237 5.607119 TTCAGTCAAACTAGGCGATTTTC 57.393 39.130 0.00 0.00 0.00 2.29
237 238 7.336931 ACATATTCAGTCAAACTAGGCGATTTT 59.663 33.333 0.00 0.00 0.00 1.82
238 239 6.823689 ACATATTCAGTCAAACTAGGCGATTT 59.176 34.615 0.00 0.00 0.00 2.17
239 240 6.258727 CACATATTCAGTCAAACTAGGCGATT 59.741 38.462 0.00 0.00 0.00 3.34
240 241 5.755375 CACATATTCAGTCAAACTAGGCGAT 59.245 40.000 0.00 0.00 0.00 4.58
241 242 5.109210 CACATATTCAGTCAAACTAGGCGA 58.891 41.667 0.00 0.00 0.00 5.54
242 243 4.870426 ACACATATTCAGTCAAACTAGGCG 59.130 41.667 0.00 0.00 0.00 5.52
243 244 6.109359 AGACACATATTCAGTCAAACTAGGC 58.891 40.000 0.00 0.00 34.80 3.93
244 245 7.604164 ACAAGACACATATTCAGTCAAACTAGG 59.396 37.037 0.00 0.00 34.80 3.02
245 246 8.539770 ACAAGACACATATTCAGTCAAACTAG 57.460 34.615 0.00 0.00 34.80 2.57
246 247 8.902540 AACAAGACACATATTCAGTCAAACTA 57.097 30.769 0.00 0.00 34.80 2.24
247 248 7.807977 AACAAGACACATATTCAGTCAAACT 57.192 32.000 0.00 0.00 34.80 2.66
248 249 7.379529 CCAAACAAGACACATATTCAGTCAAAC 59.620 37.037 0.00 0.00 34.80 2.93
249 250 7.424803 CCAAACAAGACACATATTCAGTCAAA 58.575 34.615 0.00 0.00 34.80 2.69
250 251 6.514870 GCCAAACAAGACACATATTCAGTCAA 60.515 38.462 0.00 0.00 34.80 3.18
251 252 5.048782 GCCAAACAAGACACATATTCAGTCA 60.049 40.000 0.00 0.00 34.80 3.41
252 253 5.393962 GCCAAACAAGACACATATTCAGTC 58.606 41.667 0.00 0.00 0.00 3.51
253 254 4.218417 GGCCAAACAAGACACATATTCAGT 59.782 41.667 0.00 0.00 0.00 3.41
254 255 4.672542 CGGCCAAACAAGACACATATTCAG 60.673 45.833 2.24 0.00 0.00 3.02
255 256 3.190327 CGGCCAAACAAGACACATATTCA 59.810 43.478 2.24 0.00 0.00 2.57
256 257 3.438781 TCGGCCAAACAAGACACATATTC 59.561 43.478 2.24 0.00 0.00 1.75
257 258 3.417101 TCGGCCAAACAAGACACATATT 58.583 40.909 2.24 0.00 0.00 1.28
258 259 3.009723 CTCGGCCAAACAAGACACATAT 58.990 45.455 2.24 0.00 0.00 1.78
259 260 2.224426 ACTCGGCCAAACAAGACACATA 60.224 45.455 2.24 0.00 0.00 2.29
260 261 1.238439 CTCGGCCAAACAAGACACAT 58.762 50.000 2.24 0.00 0.00 3.21
261 262 0.107410 ACTCGGCCAAACAAGACACA 60.107 50.000 2.24 0.00 0.00 3.72
262 263 1.021968 AACTCGGCCAAACAAGACAC 58.978 50.000 2.24 0.00 0.00 3.67
263 264 1.757682 AAACTCGGCCAAACAAGACA 58.242 45.000 2.24 0.00 0.00 3.41
264 265 2.863401 AAAACTCGGCCAAACAAGAC 57.137 45.000 2.24 0.00 0.00 3.01
292 293 0.603065 GCCCAATCCAGACGCTTTTT 59.397 50.000 0.00 0.00 0.00 1.94
293 294 0.251341 AGCCCAATCCAGACGCTTTT 60.251 50.000 0.00 0.00 0.00 2.27
294 295 0.251341 AAGCCCAATCCAGACGCTTT 60.251 50.000 0.00 0.00 36.40 3.51
295 296 0.962356 CAAGCCCAATCCAGACGCTT 60.962 55.000 0.00 0.00 40.29 4.68
296 297 1.377725 CAAGCCCAATCCAGACGCT 60.378 57.895 0.00 0.00 0.00 5.07
297 298 2.409870 CCAAGCCCAATCCAGACGC 61.410 63.158 0.00 0.00 0.00 5.19
298 299 1.750399 CCCAAGCCCAATCCAGACG 60.750 63.158 0.00 0.00 0.00 4.18
299 300 1.380380 CCCCAAGCCCAATCCAGAC 60.380 63.158 0.00 0.00 0.00 3.51
300 301 3.099171 CCCCAAGCCCAATCCAGA 58.901 61.111 0.00 0.00 0.00 3.86
301 302 2.761213 GCCCCAAGCCCAATCCAG 60.761 66.667 0.00 0.00 34.35 3.86
302 303 4.757355 CGCCCCAAGCCCAATCCA 62.757 66.667 0.00 0.00 38.78 3.41
336 337 2.958578 AAATATCAGCGTGGGGGCGG 62.959 60.000 0.00 0.00 38.18 6.13
337 338 1.101049 AAAATATCAGCGTGGGGGCG 61.101 55.000 0.00 0.00 38.18 6.13
338 339 0.668535 GAAAATATCAGCGTGGGGGC 59.331 55.000 0.00 0.00 0.00 5.80
339 340 0.944386 CGAAAATATCAGCGTGGGGG 59.056 55.000 0.00 0.00 0.00 5.40
340 341 0.307760 GCGAAAATATCAGCGTGGGG 59.692 55.000 0.00 0.00 0.00 4.96
341 342 0.307760 GGCGAAAATATCAGCGTGGG 59.692 55.000 0.00 0.00 0.00 4.61
342 343 0.042188 CGGCGAAAATATCAGCGTGG 60.042 55.000 0.00 0.00 0.00 4.94
343 344 0.927537 TCGGCGAAAATATCAGCGTG 59.072 50.000 7.35 0.00 0.00 5.34
344 345 0.928229 GTCGGCGAAAATATCAGCGT 59.072 50.000 12.92 0.00 0.00 5.07
345 346 0.111704 CGTCGGCGAAAATATCAGCG 60.112 55.000 12.92 3.38 41.33 5.18
346 347 0.383124 GCGTCGGCGAAAATATCAGC 60.383 55.000 16.53 3.70 41.33 4.26
347 348 3.710233 GCGTCGGCGAAAATATCAG 57.290 52.632 16.53 0.00 41.33 2.90
367 368 3.721370 AAATAGCGCTGCCTGGGGG 62.721 63.158 22.90 0.00 0.00 5.40
368 369 2.124151 AAATAGCGCTGCCTGGGG 60.124 61.111 22.90 0.00 0.00 4.96
369 370 1.442526 CTCAAATAGCGCTGCCTGGG 61.443 60.000 22.90 10.13 0.00 4.45
370 371 1.442526 CCTCAAATAGCGCTGCCTGG 61.443 60.000 22.90 10.71 0.00 4.45
371 372 2.020131 CCTCAAATAGCGCTGCCTG 58.980 57.895 22.90 13.91 0.00 4.85
372 373 1.821332 GCCTCAAATAGCGCTGCCT 60.821 57.895 22.90 0.88 0.00 4.75
373 374 2.718107 GCCTCAAATAGCGCTGCC 59.282 61.111 22.90 0.00 0.00 4.85
374 375 2.718107 GGCCTCAAATAGCGCTGC 59.282 61.111 22.90 13.03 0.00 5.25
375 376 2.189499 GGGGCCTCAAATAGCGCTG 61.189 63.158 22.90 3.60 41.34 5.18
376 377 2.193248 GGGGCCTCAAATAGCGCT 59.807 61.111 17.26 17.26 41.34 5.92
377 378 2.189499 CAGGGGCCTCAAATAGCGC 61.189 63.158 4.79 0.00 40.91 5.92
378 379 1.526917 CCAGGGGCCTCAAATAGCG 60.527 63.158 4.79 0.00 0.00 4.26
379 380 1.152673 CCCAGGGGCCTCAAATAGC 60.153 63.158 4.79 0.00 0.00 2.97
380 381 1.538666 CCCCAGGGGCCTCAAATAG 59.461 63.158 13.35 0.00 35.35 1.73
381 382 3.768374 CCCCAGGGGCCTCAAATA 58.232 61.111 13.35 0.00 35.35 1.40
402 403 4.473520 AGCATCCCTGGCCGTTCG 62.474 66.667 0.00 0.00 0.00 3.95
403 404 1.686325 TAGAGCATCCCTGGCCGTTC 61.686 60.000 0.00 0.00 33.66 3.95
404 405 1.689233 TAGAGCATCCCTGGCCGTT 60.689 57.895 0.00 0.00 33.66 4.44
405 406 2.041922 TAGAGCATCCCTGGCCGT 60.042 61.111 0.00 0.00 33.66 5.68
406 407 1.834378 TCTAGAGCATCCCTGGCCG 60.834 63.158 0.00 0.00 33.66 6.13
407 408 1.751563 GTCTAGAGCATCCCTGGCC 59.248 63.158 0.00 0.00 33.66 5.36
408 409 1.109920 TCGTCTAGAGCATCCCTGGC 61.110 60.000 0.00 0.00 33.66 4.85
409 410 1.626686 ATCGTCTAGAGCATCCCTGG 58.373 55.000 0.00 0.00 33.66 4.45
410 411 2.160615 CGTATCGTCTAGAGCATCCCTG 59.839 54.545 0.00 0.00 33.66 4.45
411 412 2.428491 CGTATCGTCTAGAGCATCCCT 58.572 52.381 0.00 0.00 33.66 4.20
412 413 1.469308 CCGTATCGTCTAGAGCATCCC 59.531 57.143 0.00 0.00 33.66 3.85
413 414 2.152830 ACCGTATCGTCTAGAGCATCC 58.847 52.381 0.00 0.00 33.66 3.51
414 415 3.900388 AACCGTATCGTCTAGAGCATC 57.100 47.619 0.00 0.00 0.00 3.91
415 416 4.650754 AAAACCGTATCGTCTAGAGCAT 57.349 40.909 0.00 0.00 0.00 3.79
416 417 4.082625 TGAAAAACCGTATCGTCTAGAGCA 60.083 41.667 0.00 0.00 0.00 4.26
417 418 4.418392 TGAAAAACCGTATCGTCTAGAGC 58.582 43.478 0.00 0.00 0.00 4.09
418 419 5.638783 ACTGAAAAACCGTATCGTCTAGAG 58.361 41.667 0.00 0.00 0.00 2.43
419 420 5.181811 TGACTGAAAAACCGTATCGTCTAGA 59.818 40.000 0.00 0.00 0.00 2.43
420 421 5.396484 TGACTGAAAAACCGTATCGTCTAG 58.604 41.667 0.00 0.00 0.00 2.43
421 422 5.375417 TGACTGAAAAACCGTATCGTCTA 57.625 39.130 0.00 0.00 0.00 2.59
422 423 4.247267 TGACTGAAAAACCGTATCGTCT 57.753 40.909 0.00 0.00 0.00 4.18
423 424 4.387862 ACATGACTGAAAAACCGTATCGTC 59.612 41.667 0.00 0.00 0.00 4.20
424 425 4.312443 ACATGACTGAAAAACCGTATCGT 58.688 39.130 0.00 0.00 0.00 3.73
425 426 4.921470 ACATGACTGAAAAACCGTATCG 57.079 40.909 0.00 0.00 0.00 2.92
462 463 8.770438 AAAAACTTCTGTAATTTGACAAGCAA 57.230 26.923 0.00 0.00 33.88 3.91
494 495 4.202377 TGAAGTAATTCCCCACGAGTCAAA 60.202 41.667 0.00 0.00 0.00 2.69
496 497 2.901192 TGAAGTAATTCCCCACGAGTCA 59.099 45.455 0.00 0.00 0.00 3.41
532 536 6.139679 AGGTCATTTTTCAAGATGAGGGTA 57.860 37.500 0.00 0.00 33.27 3.69
543 547 5.004448 TGGCAATACGTAGGTCATTTTTCA 58.996 37.500 0.08 0.00 0.00 2.69
568 572 5.536161 CCTCACTCCTCAAAGGAAATTCAAA 59.464 40.000 0.00 0.00 45.28 2.69
842 897 2.048127 GAGACGCCGCTTTGACCT 60.048 61.111 0.00 0.00 0.00 3.85
850 905 2.150397 ATATAAAGGTGAGACGCCGC 57.850 50.000 0.00 0.00 39.30 6.53
860 915 1.939838 GCTGCGCGCCTATATAAAGGT 60.940 52.381 30.77 0.00 39.02 3.50
888 948 1.966451 GCTGTGTTTGGGAGGTCGG 60.966 63.158 0.00 0.00 0.00 4.79
896 959 0.179105 TGCTTGCTTGCTGTGTTTGG 60.179 50.000 3.47 0.00 0.00 3.28
905 968 2.480759 CCAGGATATGTTGCTTGCTTGC 60.481 50.000 0.00 0.00 0.00 4.01
925 992 1.477295 CCCTGAGACTCGGTTCTAACC 59.523 57.143 10.43 1.54 45.76 2.85
928 995 2.307980 TCTTCCCTGAGACTCGGTTCTA 59.692 50.000 10.43 0.00 0.00 2.10
932 999 1.619332 GTTTCTTCCCTGAGACTCGGT 59.381 52.381 10.43 0.00 0.00 4.69
933 1000 1.896465 AGTTTCTTCCCTGAGACTCGG 59.104 52.381 4.11 4.11 26.90 4.63
960 1053 1.595929 ACACGACACCCGCGAAAAT 60.596 52.632 8.23 0.00 43.32 1.82
962 1055 2.702751 ATCACACGACACCCGCGAAA 62.703 55.000 8.23 0.00 43.32 3.46
968 1062 0.517316 GCTTTGATCACACGACACCC 59.483 55.000 0.00 0.00 0.00 4.61
1278 1404 1.687493 GTAGCCACCTCCCAGCTCT 60.687 63.158 0.00 0.00 38.06 4.09
1313 1467 1.399215 CGGAACCAACAACGTGCATAC 60.399 52.381 0.00 0.00 0.00 2.39
1396 1557 5.068460 TCAAAGAACAAACCGACCAATCAAT 59.932 36.000 0.00 0.00 0.00 2.57
1406 1567 3.963665 TGCAATCTCAAAGAACAAACCG 58.036 40.909 0.00 0.00 0.00 4.44
1440 1603 0.238817 TACAATCCAAAACGGCGTGC 59.761 50.000 15.70 0.00 33.14 5.34
1469 1632 4.927425 TGTAACCGAAGCACAATCTTAGAC 59.073 41.667 0.00 0.00 0.00 2.59
1482 1645 1.060713 CGACTGCACTGTAACCGAAG 58.939 55.000 0.00 0.00 0.00 3.79
1517 1680 3.643320 ACTCTGTTCATCACAAGTCTCCA 59.357 43.478 0.00 0.00 33.87 3.86
1605 1791 4.119363 GCCATCTGCCCTCCTGCA 62.119 66.667 0.00 0.00 39.37 4.41
1630 1816 7.062605 CCTCAAAATCTTCACCGAATTTTCATG 59.937 37.037 0.00 0.00 0.00 3.07
1645 1831 5.416952 CCACTGAACTATGCCTCAAAATCTT 59.583 40.000 0.00 0.00 0.00 2.40
1649 1835 4.098914 ACCACTGAACTATGCCTCAAAA 57.901 40.909 0.00 0.00 0.00 2.44
1664 1850 1.303317 CTCCCGGGGAAAACCACTG 60.303 63.158 23.50 0.00 42.91 3.66
1665 1851 1.462627 TCTCCCGGGGAAAACCACT 60.463 57.895 23.50 0.00 42.91 4.00
1694 1880 4.914177 AAACCTAAGAACCGATACCCAA 57.086 40.909 0.00 0.00 0.00 4.12
1740 1926 1.651138 GTCATCGAAGAGAAGCACACG 59.349 52.381 0.00 0.00 43.63 4.49
1741 1927 2.677199 TGTCATCGAAGAGAAGCACAC 58.323 47.619 0.00 0.00 43.63 3.82
1773 1959 1.600916 GGGAGTGCACTGTTGGACC 60.601 63.158 27.27 17.69 44.95 4.46
1774 1960 1.961277 CGGGAGTGCACTGTTGGAC 60.961 63.158 27.27 8.40 44.21 4.02
1776 1962 2.669569 CCGGGAGTGCACTGTTGG 60.670 66.667 27.27 18.16 0.00 3.77
1777 1963 2.111043 ACCGGGAGTGCACTGTTG 59.889 61.111 27.27 12.84 0.00 3.33
1778 1964 2.111043 CACCGGGAGTGCACTGTT 59.889 61.111 27.27 0.00 40.28 3.16
1786 1972 1.528309 CCAACAAAGCACCGGGAGT 60.528 57.895 6.32 0.00 0.00 3.85
1787 1973 1.106944 AACCAACAAAGCACCGGGAG 61.107 55.000 6.32 0.00 0.00 4.30
1791 1977 0.172352 ACACAACCAACAAAGCACCG 59.828 50.000 0.00 0.00 0.00 4.94
1829 2015 0.394762 ACCGTCATACAGGTCGGCTA 60.395 55.000 0.00 0.00 45.76 3.93
1831 2017 0.390735 AAACCGTCATACAGGTCGGC 60.391 55.000 0.00 0.00 45.76 5.54
1837 2023 4.863131 GGTGTAGAGAAAACCGTCATACAG 59.137 45.833 0.00 0.00 0.00 2.74
1845 2031 5.699458 ACAACATAAGGTGTAGAGAAAACCG 59.301 40.000 0.00 0.00 41.14 4.44
1847 2033 7.288672 CGAACAACATAAGGTGTAGAGAAAAC 58.711 38.462 0.00 0.00 41.14 2.43
1851 2037 4.619863 GCCGAACAACATAAGGTGTAGAGA 60.620 45.833 0.00 0.00 41.14 3.10
1863 2049 2.258013 CCACACGGCCGAACAACAT 61.258 57.895 35.90 3.57 0.00 2.71
1865 2051 3.656045 CCCACACGGCCGAACAAC 61.656 66.667 35.90 0.00 0.00 3.32
1883 2069 6.020372 CGCTTTTTCATGATCAGACTTTCTC 58.980 40.000 0.09 0.00 0.00 2.87
1893 2079 3.307242 ACTCGCTACGCTTTTTCATGATC 59.693 43.478 0.00 0.00 0.00 2.92
1896 2082 3.455619 AACTCGCTACGCTTTTTCATG 57.544 42.857 0.00 0.00 0.00 3.07
1900 2086 1.723003 CGGTAACTCGCTACGCTTTTT 59.277 47.619 0.00 0.00 0.00 1.94
1912 2098 2.752903 ACCAAATTCATGGCGGTAACTC 59.247 45.455 0.00 0.00 44.75 3.01
1921 2107 2.234414 CCAACCCTCACCAAATTCATGG 59.766 50.000 0.00 0.00 46.38 3.66
1933 2119 2.843545 GAGGCCAACCAACCCTCA 59.156 61.111 5.01 0.00 43.63 3.86
1939 2125 2.380064 AGACATTTGAGGCCAACCAA 57.620 45.000 5.01 2.97 39.06 3.67
1950 2136 2.624838 ACCAGGCACTCAAAGACATTTG 59.375 45.455 0.00 0.00 45.98 2.32
1964 2150 1.676248 ACAAACCCCTATACCAGGCA 58.324 50.000 0.00 0.00 43.98 4.75
1969 2155 5.183530 AGTAACCAACAAACCCCTATACC 57.816 43.478 0.00 0.00 0.00 2.73
1985 2171 7.227910 TCAAAGAATGGTGTGAAGTAAGTAACC 59.772 37.037 0.00 0.00 0.00 2.85
2021 2207 9.610705 TCAATCAAATCAATCCAAAAAGAACAA 57.389 25.926 0.00 0.00 0.00 2.83
2029 2215 8.921353 AAACCAATCAATCAAATCAATCCAAA 57.079 26.923 0.00 0.00 0.00 3.28
2061 2247 8.995220 GCTTACGTAATTTACATATCCAATCCA 58.005 33.333 8.76 0.00 0.00 3.41
2088 2274 7.383687 ACCTCGAGTTGTCATTGTAATCTTAA 58.616 34.615 12.31 0.00 0.00 1.85
2114 2300 1.672881 GCCTTCGTGATTCCCATCTTG 59.327 52.381 0.00 0.00 0.00 3.02
2146 2332 0.951040 GTTGGAGAAGCTGGTGACGG 60.951 60.000 0.00 0.00 40.79 4.79
2151 2337 0.474660 AGAGGGTTGGAGAAGCTGGT 60.475 55.000 0.00 0.00 0.00 4.00
2163 2349 3.069318 GAGGACGGCGAGAGGGTT 61.069 66.667 16.62 0.00 0.00 4.11
2175 2361 0.037447 AAGCAAAGCCCTCTGAGGAC 59.963 55.000 25.18 14.07 37.67 3.85
2178 2364 1.593296 GCCAAGCAAAGCCCTCTGAG 61.593 60.000 0.00 0.00 0.00 3.35
2179 2365 1.604593 GCCAAGCAAAGCCCTCTGA 60.605 57.895 0.00 0.00 0.00 3.27
2190 2376 2.869646 CGCGAGATTTGCCAAGCA 59.130 55.556 0.00 0.00 36.47 3.91
2192 2378 1.226211 CTGCGCGAGATTTGCCAAG 60.226 57.895 12.10 0.00 0.00 3.61
2201 2387 1.227118 TTGTTGTCACTGCGCGAGA 60.227 52.632 12.10 0.00 0.00 4.04
2207 2393 0.043310 GACGACGTTGTTGTCACTGC 60.043 55.000 10.42 0.00 44.04 4.40
2210 2396 1.000884 TTGGACGACGTTGTTGTCAC 58.999 50.000 10.42 8.55 45.79 3.67
2211 2397 1.862201 GATTGGACGACGTTGTTGTCA 59.138 47.619 10.42 6.68 45.79 3.58
2221 2407 1.823899 GGGCATGGGATTGGACGAC 60.824 63.158 0.00 0.00 0.00 4.34
2222 2408 2.304831 TGGGCATGGGATTGGACGA 61.305 57.895 0.00 0.00 0.00 4.20
2223 2409 2.120909 GTGGGCATGGGATTGGACG 61.121 63.158 0.00 0.00 0.00 4.79
2224 2410 1.758122 GGTGGGCATGGGATTGGAC 60.758 63.158 0.00 0.00 0.00 4.02
2225 2411 2.689175 GGTGGGCATGGGATTGGA 59.311 61.111 0.00 0.00 0.00 3.53
2226 2412 2.444517 GGGTGGGCATGGGATTGG 60.445 66.667 0.00 0.00 0.00 3.16
2227 2413 2.059786 GTGGGTGGGCATGGGATTG 61.060 63.158 0.00 0.00 0.00 2.67
2228 2414 2.364160 GTGGGTGGGCATGGGATT 59.636 61.111 0.00 0.00 0.00 3.01
2229 2415 4.127744 CGTGGGTGGGCATGGGAT 62.128 66.667 0.00 0.00 0.00 3.85
2231 2417 3.877344 TTTCGTGGGTGGGCATGGG 62.877 63.158 0.00 0.00 0.00 4.00
2232 2418 1.682005 ATTTCGTGGGTGGGCATGG 60.682 57.895 0.00 0.00 0.00 3.66
2233 2419 1.512230 CATTTCGTGGGTGGGCATG 59.488 57.895 0.00 0.00 0.00 4.06
2234 2420 2.350458 GCATTTCGTGGGTGGGCAT 61.350 57.895 0.00 0.00 0.00 4.40
2235 2421 2.988684 GCATTTCGTGGGTGGGCA 60.989 61.111 0.00 0.00 0.00 5.36
2236 2422 3.758931 GGCATTTCGTGGGTGGGC 61.759 66.667 0.00 0.00 0.00 5.36
2237 2423 3.068064 GGGCATTTCGTGGGTGGG 61.068 66.667 0.00 0.00 0.00 4.61
2238 2424 2.035626 AGGGCATTTCGTGGGTGG 59.964 61.111 0.00 0.00 0.00 4.61
2239 2425 0.893270 TTGAGGGCATTTCGTGGGTG 60.893 55.000 0.00 0.00 0.00 4.61
2240 2426 0.893727 GTTGAGGGCATTTCGTGGGT 60.894 55.000 0.00 0.00 0.00 4.51
2241 2427 1.595093 GGTTGAGGGCATTTCGTGGG 61.595 60.000 0.00 0.00 0.00 4.61
2242 2428 0.893270 TGGTTGAGGGCATTTCGTGG 60.893 55.000 0.00 0.00 0.00 4.94
2243 2429 1.176527 ATGGTTGAGGGCATTTCGTG 58.823 50.000 0.00 0.00 0.00 4.35
2244 2430 1.923356 AATGGTTGAGGGCATTTCGT 58.077 45.000 0.00 0.00 0.00 3.85
2245 2431 3.278574 TCTAATGGTTGAGGGCATTTCG 58.721 45.455 0.00 0.00 0.00 3.46
2246 2432 4.142160 GGTTCTAATGGTTGAGGGCATTTC 60.142 45.833 0.00 0.00 0.00 2.17
2247 2433 3.769300 GGTTCTAATGGTTGAGGGCATTT 59.231 43.478 0.00 0.00 0.00 2.32
2248 2434 3.365472 GGTTCTAATGGTTGAGGGCATT 58.635 45.455 0.00 0.00 0.00 3.56
2249 2435 2.683742 CGGTTCTAATGGTTGAGGGCAT 60.684 50.000 0.00 0.00 0.00 4.40
2250 2436 1.339631 CGGTTCTAATGGTTGAGGGCA 60.340 52.381 0.00 0.00 0.00 5.36
2251 2437 1.339727 ACGGTTCTAATGGTTGAGGGC 60.340 52.381 0.00 0.00 0.00 5.19
2252 2438 2.629051 GACGGTTCTAATGGTTGAGGG 58.371 52.381 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.