Multiple sequence alignment - TraesCS5D01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G235400 chr5D 100.000 5729 0 0 1 5729 344432138 344426410 0.000000e+00 10580
1 TraesCS5D01G235400 chr5A 90.123 4141 230 79 128 4215 448113856 448109842 0.000000e+00 5216
2 TraesCS5D01G235400 chr5A 89.951 617 47 12 4384 4992 448109716 448109107 0.000000e+00 782
3 TraesCS5D01G235400 chr5A 81.703 634 71 24 5119 5729 448109077 448108466 2.400000e-133 486
4 TraesCS5D01G235400 chr5B 94.324 2079 82 31 2160 4215 407637380 407639445 0.000000e+00 3153
5 TraesCS5D01G235400 chr5B 88.010 1643 96 36 269 1850 407634045 407635647 0.000000e+00 1849
6 TraesCS5D01G235400 chr5B 94.368 728 34 4 4213 4940 407639558 407640278 0.000000e+00 1110
7 TraesCS5D01G235400 chr5B 92.222 270 17 2 1895 2160 407635643 407635912 4.190000e-101 379
8 TraesCS5D01G235400 chr5B 92.991 214 10 1 5513 5726 407642606 407642814 2.010000e-79 307
9 TraesCS5D01G235400 chr7A 92.958 71 5 0 5656 5726 305209175 305209245 2.820000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G235400 chr5D 344426410 344432138 5728 True 10580.000000 10580 100.000 1 5729 1 chr5D.!!$R1 5728
1 TraesCS5D01G235400 chr5A 448108466 448113856 5390 True 2161.333333 5216 87.259 128 5729 3 chr5A.!!$R1 5601
2 TraesCS5D01G235400 chr5B 407634045 407642814 8769 False 1359.600000 3153 92.383 269 5726 5 chr5B.!!$F1 5457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.033503 TCGTGGGGTCTGCTAGATGA 60.034 55.000 0.00 0.0 0.00 2.92 F
1095 1152 0.026285 CGCGGGCGAGAATAAACAAG 59.974 55.000 7.38 0.0 42.83 3.16 F
1713 1798 0.392706 TTGGCTGTCATCGGCGATAT 59.607 50.000 23.53 0.0 46.03 1.63 F
1725 1810 0.865769 GGCGATATTAACCTGCACCG 59.134 55.000 0.00 0.0 0.00 4.94 F
2813 4420 1.002134 CGTTGGACAAGGCCCTGAT 60.002 57.895 8.77 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 1992 0.683973 AGCTCACTGGTTGACCTCAG 59.316 55.000 1.34 0.0 36.82 3.35 R
1905 1993 1.131638 AAGCTCACTGGTTGACCTCA 58.868 50.000 1.34 0.0 34.77 3.86 R
2879 4486 1.813178 GCAAGGGAAGTTGTAAGAGCC 59.187 52.381 0.00 0.0 0.00 4.70 R
3712 5320 2.804527 CACTACATCATCGGCATTGGAG 59.195 50.000 0.00 0.0 0.00 3.86 R
4783 6514 0.107897 ACTGAAACTGCACACGGTCA 60.108 50.000 0.00 0.0 32.87 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.898152 AGAAAGAGAGAAGAAGAAAGAAAAAGA 57.102 29.630 0.00 0.00 0.00 2.52
31 32 9.844257 AAGAGAGAAGAAGAAAGAAAAAGATGA 57.156 29.630 0.00 0.00 0.00 2.92
32 33 9.844257 AGAGAGAAGAAGAAAGAAAAAGATGAA 57.156 29.630 0.00 0.00 0.00 2.57
34 35 9.625747 AGAGAAGAAGAAAGAAAAAGATGAAGT 57.374 29.630 0.00 0.00 0.00 3.01
39 40 9.183368 AGAAGAAAGAAAAAGATGAAGTTGAGT 57.817 29.630 0.00 0.00 0.00 3.41
40 41 9.794685 GAAGAAAGAAAAAGATGAAGTTGAGTT 57.205 29.630 0.00 0.00 0.00 3.01
41 42 9.578439 AAGAAAGAAAAAGATGAAGTTGAGTTG 57.422 29.630 0.00 0.00 0.00 3.16
42 43 8.193438 AGAAAGAAAAAGATGAAGTTGAGTTGG 58.807 33.333 0.00 0.00 0.00 3.77
43 44 7.410120 AAGAAAAAGATGAAGTTGAGTTGGT 57.590 32.000 0.00 0.00 0.00 3.67
44 45 7.410120 AGAAAAAGATGAAGTTGAGTTGGTT 57.590 32.000 0.00 0.00 0.00 3.67
45 46 7.484140 AGAAAAAGATGAAGTTGAGTTGGTTC 58.516 34.615 0.00 0.00 0.00 3.62
46 47 5.424121 AAAGATGAAGTTGAGTTGGTTCG 57.576 39.130 0.00 0.00 0.00 3.95
47 48 4.073293 AGATGAAGTTGAGTTGGTTCGT 57.927 40.909 0.00 0.00 0.00 3.85
48 49 3.809832 AGATGAAGTTGAGTTGGTTCGTG 59.190 43.478 0.00 0.00 0.00 4.35
49 50 2.285083 TGAAGTTGAGTTGGTTCGTGG 58.715 47.619 0.00 0.00 0.00 4.94
50 51 1.602377 GAAGTTGAGTTGGTTCGTGGG 59.398 52.381 0.00 0.00 0.00 4.61
51 52 0.179029 AGTTGAGTTGGTTCGTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
52 53 0.464916 GTTGAGTTGGTTCGTGGGGT 60.465 55.000 0.00 0.00 0.00 4.95
53 54 0.179040 TTGAGTTGGTTCGTGGGGTC 60.179 55.000 0.00 0.00 0.00 4.46
54 55 1.052124 TGAGTTGGTTCGTGGGGTCT 61.052 55.000 0.00 0.00 0.00 3.85
55 56 0.602905 GAGTTGGTTCGTGGGGTCTG 60.603 60.000 0.00 0.00 0.00 3.51
56 57 2.112297 TTGGTTCGTGGGGTCTGC 59.888 61.111 0.00 0.00 0.00 4.26
57 58 2.448582 TTGGTTCGTGGGGTCTGCT 61.449 57.895 0.00 0.00 0.00 4.24
58 59 1.122632 TTGGTTCGTGGGGTCTGCTA 61.123 55.000 0.00 0.00 0.00 3.49
59 60 1.218316 GGTTCGTGGGGTCTGCTAG 59.782 63.158 0.00 0.00 0.00 3.42
60 61 1.255667 GGTTCGTGGGGTCTGCTAGA 61.256 60.000 0.00 0.00 0.00 2.43
61 62 0.824759 GTTCGTGGGGTCTGCTAGAT 59.175 55.000 0.00 0.00 0.00 1.98
62 63 0.824109 TTCGTGGGGTCTGCTAGATG 59.176 55.000 0.00 0.00 0.00 2.90
63 64 0.033503 TCGTGGGGTCTGCTAGATGA 60.034 55.000 0.00 0.00 0.00 2.92
64 65 0.824109 CGTGGGGTCTGCTAGATGAA 59.176 55.000 0.00 0.00 0.00 2.57
65 66 1.207089 CGTGGGGTCTGCTAGATGAAA 59.793 52.381 0.00 0.00 0.00 2.69
66 67 2.354704 CGTGGGGTCTGCTAGATGAAAA 60.355 50.000 0.00 0.00 0.00 2.29
67 68 3.686016 GTGGGGTCTGCTAGATGAAAAA 58.314 45.455 0.00 0.00 0.00 1.94
91 92 9.502091 AAAAGTTTAATCCTAAAAATTGCTCCC 57.498 29.630 0.00 0.00 0.00 4.30
92 93 8.435931 AAGTTTAATCCTAAAAATTGCTCCCT 57.564 30.769 0.00 0.00 0.00 4.20
93 94 7.840931 AGTTTAATCCTAAAAATTGCTCCCTG 58.159 34.615 0.00 0.00 0.00 4.45
94 95 7.454694 AGTTTAATCCTAAAAATTGCTCCCTGT 59.545 33.333 0.00 0.00 0.00 4.00
95 96 8.745590 GTTTAATCCTAAAAATTGCTCCCTGTA 58.254 33.333 0.00 0.00 0.00 2.74
96 97 8.887264 TTAATCCTAAAAATTGCTCCCTGTAA 57.113 30.769 0.00 0.00 0.00 2.41
97 98 6.775594 ATCCTAAAAATTGCTCCCTGTAAC 57.224 37.500 0.00 0.00 0.00 2.50
98 99 5.887754 TCCTAAAAATTGCTCCCTGTAACT 58.112 37.500 0.00 0.00 0.00 2.24
99 100 6.311735 TCCTAAAAATTGCTCCCTGTAACTT 58.688 36.000 0.00 0.00 0.00 2.66
100 101 7.463431 TCCTAAAAATTGCTCCCTGTAACTTA 58.537 34.615 0.00 0.00 0.00 2.24
101 102 7.945664 TCCTAAAAATTGCTCCCTGTAACTTAA 59.054 33.333 0.00 0.00 0.00 1.85
102 103 8.749354 CCTAAAAATTGCTCCCTGTAACTTAAT 58.251 33.333 0.00 0.00 0.00 1.40
110 111 9.778741 TTGCTCCCTGTAACTTAATATAAGATG 57.221 33.333 4.24 0.00 0.00 2.90
111 112 8.934697 TGCTCCCTGTAACTTAATATAAGATGT 58.065 33.333 4.24 0.00 0.00 3.06
112 113 9.780186 GCTCCCTGTAACTTAATATAAGATGTT 57.220 33.333 4.24 0.00 0.00 2.71
165 166 6.494893 TGACATGACTATAGTGCCAAAAAC 57.505 37.500 10.90 0.00 0.00 2.43
166 167 5.414454 TGACATGACTATAGTGCCAAAAACC 59.586 40.000 10.90 0.00 0.00 3.27
179 180 7.317390 AGTGCCAAAAACCGGTTTATATTAAG 58.683 34.615 31.80 17.27 31.63 1.85
226 227 7.850935 ATACGAAAGGTAGGATGAGGAATTA 57.149 36.000 0.00 0.00 33.84 1.40
253 254 1.488393 GGAGATATGCTAGGGATGCCC 59.512 57.143 0.00 0.00 45.90 5.36
265 266 0.963355 GGATGCCCGCAACCAGTAAA 60.963 55.000 10.81 0.00 38.55 2.01
272 273 2.364632 CCGCAACCAGTAAATCATGGA 58.635 47.619 0.00 0.00 39.02 3.41
293 294 0.328926 TGGCATCCACATCTGAAGCA 59.671 50.000 0.00 0.00 0.00 3.91
299 300 4.261072 GCATCCACATCTGAAGCAATACAG 60.261 45.833 0.00 0.00 35.72 2.74
340 341 2.464459 CCGATGCCAGCGTTTCTCC 61.464 63.158 0.28 0.00 0.00 3.71
373 374 1.817099 GACCCGAGCCATGCAAGAG 60.817 63.158 0.00 0.00 0.00 2.85
377 378 1.817099 CGAGCCATGCAAGAGTCCC 60.817 63.158 0.00 0.00 0.00 4.46
406 427 4.189580 ACACGTGGCCTGCAACCT 62.190 61.111 21.57 0.00 0.00 3.50
418 439 2.613977 CCTGCAACCTCGTTCTTCAGAT 60.614 50.000 0.00 0.00 0.00 2.90
419 440 2.670414 CTGCAACCTCGTTCTTCAGATC 59.330 50.000 0.00 0.00 0.00 2.75
420 441 2.037121 TGCAACCTCGTTCTTCAGATCA 59.963 45.455 0.00 0.00 0.00 2.92
421 442 2.670414 GCAACCTCGTTCTTCAGATCAG 59.330 50.000 0.00 0.00 0.00 2.90
422 443 3.615110 GCAACCTCGTTCTTCAGATCAGA 60.615 47.826 0.00 0.00 0.00 3.27
423 444 4.560128 CAACCTCGTTCTTCAGATCAGAA 58.440 43.478 0.22 0.22 0.00 3.02
424 445 4.873746 ACCTCGTTCTTCAGATCAGAAA 57.126 40.909 1.94 0.00 31.98 2.52
437 458 2.730183 TCAGAAAACTTTGCGTGTCG 57.270 45.000 0.00 0.00 0.00 4.35
464 486 2.032681 GGCTGGAGTGCCGTTTCT 59.967 61.111 0.00 0.00 43.74 2.52
496 519 0.321346 CCCCAAACCAAATGCTCACC 59.679 55.000 0.00 0.00 0.00 4.02
504 527 1.973281 AAATGCTCACCGCCACCTG 60.973 57.895 0.00 0.00 38.05 4.00
506 529 2.410322 AATGCTCACCGCCACCTGAA 62.410 55.000 0.00 0.00 38.05 3.02
509 532 1.374758 CTCACCGCCACCTGAACTC 60.375 63.158 0.00 0.00 0.00 3.01
517 540 2.508526 GCCACCTGAACTCAACTCAAT 58.491 47.619 0.00 0.00 0.00 2.57
637 660 1.866925 GGCGCCGCTTACATAATCC 59.133 57.895 12.58 0.00 0.00 3.01
647 670 4.124238 GCTTACATAATCCCGCACACTTA 58.876 43.478 0.00 0.00 0.00 2.24
650 673 2.093181 ACATAATCCCGCACACTTAGCA 60.093 45.455 0.00 0.00 0.00 3.49
663 686 0.877649 CTTAGCATCGTCGCTGCCAT 60.878 55.000 16.85 2.94 43.68 4.40
664 687 0.387565 TTAGCATCGTCGCTGCCATA 59.612 50.000 16.85 1.97 43.68 2.74
665 688 0.318699 TAGCATCGTCGCTGCCATAC 60.319 55.000 16.85 0.00 43.68 2.39
666 689 1.882625 GCATCGTCGCTGCCATACA 60.883 57.895 9.89 0.00 33.44 2.29
686 721 3.957497 ACAGACAGATACAGACTGGGATC 59.043 47.826 7.51 9.17 39.38 3.36
744 786 1.128188 CCCTTATCTTCTCCCCCGGG 61.128 65.000 15.80 15.80 0.00 5.73
776 818 1.153628 CCATCTTCCGTCCGTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
777 819 1.605058 CCATCTTCCGTCCGTCCACT 61.605 60.000 0.00 0.00 0.00 4.00
796 838 0.635009 TCCGAGATAAGACCACCCCT 59.365 55.000 0.00 0.00 0.00 4.79
798 840 2.158505 TCCGAGATAAGACCACCCCTAG 60.159 54.545 0.00 0.00 0.00 3.02
800 842 3.563223 CGAGATAAGACCACCCCTAGAA 58.437 50.000 0.00 0.00 0.00 2.10
802 844 3.297736 AGATAAGACCACCCCTAGAACG 58.702 50.000 0.00 0.00 0.00 3.95
805 855 1.988406 GACCACCCCTAGAACGCCT 60.988 63.158 0.00 0.00 0.00 5.52
809 859 2.365105 CCCCTAGAACGCCTCCCA 60.365 66.667 0.00 0.00 0.00 4.37
810 860 2.732619 CCCCTAGAACGCCTCCCAC 61.733 68.421 0.00 0.00 0.00 4.61
833 883 2.416747 CAATGCCTCTGTTCGTCTGAA 58.583 47.619 0.00 0.00 0.00 3.02
843 897 4.340097 TCTGTTCGTCTGAAGAACTGGTAA 59.660 41.667 28.47 15.92 45.84 2.85
854 908 5.048782 TGAAGAACTGGTAATGCACATTGAC 60.049 40.000 6.13 0.03 32.50 3.18
861 915 2.183478 AATGCACATTGACGACAGGA 57.817 45.000 0.00 0.00 0.00 3.86
914 968 6.371825 AGTCGAAAAACAGTTTCTTTGAGTCT 59.628 34.615 0.00 0.00 0.00 3.24
915 969 7.021790 GTCGAAAAACAGTTTCTTTGAGTCTT 58.978 34.615 0.00 0.00 0.00 3.01
956 1010 7.094631 GGTGGGTTAATTAATCTGTGGTTTTC 58.905 38.462 8.34 0.00 0.00 2.29
973 1030 4.495184 GGTTTTCCGCGAGTACCATTATTG 60.495 45.833 8.23 0.00 0.00 1.90
993 1050 3.636231 TGGGACGGGAGCTGTTGG 61.636 66.667 0.00 0.00 0.00 3.77
1027 1084 2.598394 CTGCCCCACCAACCAGTG 60.598 66.667 0.00 0.00 37.51 3.66
1029 1086 2.430704 CTGCCCCACCAACCAGTGAT 62.431 60.000 0.00 0.00 40.34 3.06
1095 1152 0.026285 CGCGGGCGAGAATAAACAAG 59.974 55.000 7.38 0.00 42.83 3.16
1096 1153 1.084289 GCGGGCGAGAATAAACAAGT 58.916 50.000 0.00 0.00 0.00 3.16
1097 1154 1.202031 GCGGGCGAGAATAAACAAGTG 60.202 52.381 0.00 0.00 0.00 3.16
1098 1155 1.202031 CGGGCGAGAATAAACAAGTGC 60.202 52.381 0.00 0.00 0.00 4.40
1099 1156 2.084546 GGGCGAGAATAAACAAGTGCT 58.915 47.619 0.00 0.00 0.00 4.40
1100 1157 2.096013 GGGCGAGAATAAACAAGTGCTC 59.904 50.000 0.00 0.00 0.00 4.26
1101 1158 2.096013 GGCGAGAATAAACAAGTGCTCC 59.904 50.000 0.00 0.00 0.00 4.70
1102 1159 2.222819 GCGAGAATAAACAAGTGCTCCG 60.223 50.000 0.00 0.00 0.00 4.63
1103 1160 2.222819 CGAGAATAAACAAGTGCTCCGC 60.223 50.000 0.00 0.00 0.00 5.54
1139 1199 3.775654 CCTCTCGCCTCCACCACC 61.776 72.222 0.00 0.00 0.00 4.61
1140 1200 4.135153 CTCTCGCCTCCACCACCG 62.135 72.222 0.00 0.00 0.00 4.94
1415 1500 0.478507 AAGTACAAGGCCAAGGTGCT 59.521 50.000 5.01 5.83 0.00 4.40
1495 1580 3.057245 TGACTCGATCTGACTGGACTTTG 60.057 47.826 0.00 0.00 0.00 2.77
1496 1581 2.894126 ACTCGATCTGACTGGACTTTGT 59.106 45.455 0.00 0.00 0.00 2.83
1497 1582 3.249091 CTCGATCTGACTGGACTTTGTG 58.751 50.000 0.00 0.00 0.00 3.33
1498 1583 1.728971 CGATCTGACTGGACTTTGTGC 59.271 52.381 0.00 0.00 0.00 4.57
1500 1585 1.131638 TCTGACTGGACTTTGTGCCT 58.868 50.000 0.00 0.00 0.00 4.75
1501 1586 1.070758 TCTGACTGGACTTTGTGCCTC 59.929 52.381 0.00 0.00 0.00 4.70
1502 1587 1.071385 CTGACTGGACTTTGTGCCTCT 59.929 52.381 0.00 0.00 0.00 3.69
1503 1588 2.300152 CTGACTGGACTTTGTGCCTCTA 59.700 50.000 0.00 0.00 0.00 2.43
1504 1589 2.906389 TGACTGGACTTTGTGCCTCTAT 59.094 45.455 0.00 0.00 0.00 1.98
1505 1590 3.327757 TGACTGGACTTTGTGCCTCTATT 59.672 43.478 0.00 0.00 0.00 1.73
1506 1591 4.202461 TGACTGGACTTTGTGCCTCTATTT 60.202 41.667 0.00 0.00 0.00 1.40
1673 1758 4.000988 GCGTTCCTTGATAAGAAGGTGAA 58.999 43.478 0.00 0.00 42.89 3.18
1709 1794 2.480555 GTTTGGCTGTCATCGGCG 59.519 61.111 0.00 0.00 46.03 6.46
1711 1796 1.078497 TTTGGCTGTCATCGGCGAT 60.078 52.632 18.14 18.14 46.03 4.58
1713 1798 0.392706 TTGGCTGTCATCGGCGATAT 59.607 50.000 23.53 0.00 46.03 1.63
1719 1804 3.861131 GCTGTCATCGGCGATATTAACCT 60.861 47.826 23.53 0.00 36.18 3.50
1725 1810 0.865769 GGCGATATTAACCTGCACCG 59.134 55.000 0.00 0.00 0.00 4.94
1798 1886 6.714810 TGTAAGAATGTAGTTTGCCTGTCAAT 59.285 34.615 0.00 0.00 34.12 2.57
1853 1941 5.607119 TTCTCAATTAGAACAAAGTCGGC 57.393 39.130 0.00 0.00 39.36 5.54
1856 1944 5.529430 TCTCAATTAGAACAAAGTCGGCAAA 59.471 36.000 0.00 0.00 0.00 3.68
1857 1945 6.038825 TCTCAATTAGAACAAAGTCGGCAAAA 59.961 34.615 0.00 0.00 0.00 2.44
1859 1947 7.206687 TCAATTAGAACAAAGTCGGCAAAATT 58.793 30.769 0.00 0.00 0.00 1.82
1865 1953 4.050553 ACAAAGTCGGCAAAATTGTGATG 58.949 39.130 0.00 0.00 33.29 3.07
1875 1963 5.982516 GGCAAAATTGTGATGTGTTGTAAGA 59.017 36.000 0.00 0.00 0.00 2.10
1879 1967 7.642071 AAATTGTGATGTGTTGTAAGAATGC 57.358 32.000 0.00 0.00 0.00 3.56
1885 1973 3.958704 TGTGTTGTAAGAATGCCGTTTG 58.041 40.909 0.00 0.00 0.00 2.93
1893 1981 5.935206 TGTAAGAATGCCGTTTGAGTTGATA 59.065 36.000 0.00 0.00 0.00 2.15
1900 1988 4.148891 GCCGTTTGAGTTGATAAAAGTCG 58.851 43.478 0.00 0.00 0.00 4.18
1904 1992 6.294363 CGTTTGAGTTGATAAAAGTCGGTAC 58.706 40.000 0.00 0.00 0.00 3.34
1905 1993 6.145048 CGTTTGAGTTGATAAAAGTCGGTACT 59.855 38.462 0.00 0.00 37.65 2.73
1906 1994 7.288672 GTTTGAGTTGATAAAAGTCGGTACTG 58.711 38.462 0.00 0.00 35.62 2.74
1907 1995 6.335471 TGAGTTGATAAAAGTCGGTACTGA 57.665 37.500 0.00 0.00 35.62 3.41
1908 1996 6.387465 TGAGTTGATAAAAGTCGGTACTGAG 58.613 40.000 4.12 0.00 35.62 3.35
1909 1997 5.721232 AGTTGATAAAAGTCGGTACTGAGG 58.279 41.667 4.12 0.00 35.62 3.86
1910 1998 5.245526 AGTTGATAAAAGTCGGTACTGAGGT 59.754 40.000 4.12 0.00 35.62 3.85
1911 1999 5.320549 TGATAAAAGTCGGTACTGAGGTC 57.679 43.478 4.12 0.00 35.62 3.85
1912 2000 4.768448 TGATAAAAGTCGGTACTGAGGTCA 59.232 41.667 4.12 1.18 35.62 4.02
1917 2005 1.067776 GTCGGTACTGAGGTCAACCAG 60.068 57.143 4.12 0.00 38.89 4.00
1920 2008 1.968493 GGTACTGAGGTCAACCAGTGA 59.032 52.381 1.33 0.00 42.88 3.41
1949 2037 3.164268 TGGGACAACATTGGAAGGATTG 58.836 45.455 0.00 0.00 31.92 2.67
2055 2146 2.752903 GGGTTCTGGATTTGCGTAACAT 59.247 45.455 0.00 0.00 0.00 2.71
2139 2233 7.476540 TTCAGTGCTTATGGTAGAACTTCTA 57.523 36.000 0.00 0.00 31.34 2.10
2146 2240 8.459635 TGCTTATGGTAGAACTTCTATATAGCG 58.540 37.037 4.75 1.61 30.76 4.26
2197 3759 9.458374 GATTAAAAGTTTTGGACATCTCGAAAA 57.542 29.630 11.18 0.00 33.21 2.29
2199 3761 9.810545 TTAAAAGTTTTGGACATCTCGAAAATT 57.189 25.926 11.18 0.00 36.74 1.82
2305 3867 8.006298 TCCACAACATATGGAATTTATTGTCC 57.994 34.615 7.80 0.00 43.43 4.02
2681 4288 1.280421 GGCATCTCAAAGACAGACCCT 59.720 52.381 0.00 0.00 0.00 4.34
2741 4348 3.216800 GCTTGATATTGACCCTGCATCA 58.783 45.455 0.00 0.00 0.00 3.07
2777 4384 4.389374 GGGTCATGGATGTTAATGATCGT 58.611 43.478 0.00 0.00 35.20 3.73
2813 4420 1.002134 CGTTGGACAAGGCCCTGAT 60.002 57.895 8.77 0.00 0.00 2.90
2879 4486 5.278169 GGCAAGTGAGATAATGGCTGTATTG 60.278 44.000 0.00 0.00 35.66 1.90
3071 4678 1.888512 CCTGTTTTAGTGCATGCTGGT 59.111 47.619 20.33 5.75 0.00 4.00
3236 4843 5.128171 GTGTAGGTATAGTGGATTGACACCA 59.872 44.000 0.00 0.00 42.28 4.17
3323 4930 2.293170 GCTGGGAAGCCTTTAGATCAC 58.707 52.381 0.00 0.00 0.00 3.06
3344 4951 5.023920 CACGCATATGTCAGTGAAAATGTC 58.976 41.667 17.32 0.00 36.79 3.06
3345 4952 4.694982 ACGCATATGTCAGTGAAAATGTCA 59.305 37.500 4.29 0.00 34.12 3.58
3620 5227 2.554142 TGAATTACATGCAGCTCTCCG 58.446 47.619 0.00 0.00 0.00 4.63
3712 5320 8.902806 TCTATTGTCCATTTCATATGTTTGTCC 58.097 33.333 1.90 0.00 0.00 4.02
3945 5555 5.052370 GCGAGTTGATTTCACAAGAAAACAC 60.052 40.000 1.20 0.00 46.06 3.32
4196 5808 8.041323 TGAATACTCTGAACAGGTATTTCCTTC 58.959 37.037 19.24 12.83 45.67 3.46
4199 5814 4.579869 TCTGAACAGGTATTTCCTTCTGC 58.420 43.478 1.93 0.00 45.67 4.26
4206 5821 5.013599 ACAGGTATTTCCTTCTGCTCTTCTT 59.986 40.000 0.00 0.00 45.67 2.52
4207 5822 5.584251 CAGGTATTTCCTTCTGCTCTTCTTC 59.416 44.000 0.00 0.00 45.67 2.87
4209 5824 6.670027 AGGTATTTCCTTCTGCTCTTCTTCTA 59.330 38.462 0.00 0.00 45.67 2.10
4211 5826 7.990314 GGTATTTCCTTCTGCTCTTCTTCTATT 59.010 37.037 0.00 0.00 0.00 1.73
4265 5992 7.446319 TGTTCTAATTATGAGAATGATGGCCTG 59.554 37.037 3.32 0.00 35.46 4.85
4380 6107 2.856760 AAGAGATGGCACTAGAGGGA 57.143 50.000 0.00 0.00 0.00 4.20
4560 6290 2.124193 CCATCCATGAAGGGCGCA 60.124 61.111 10.83 0.00 38.24 6.09
4566 6296 2.124151 ATGAAGGGCGCACCATCC 60.124 61.111 5.73 0.00 43.89 3.51
4659 6389 0.111061 TGAGCACAATGCCTGGTCTT 59.889 50.000 0.00 0.00 46.52 3.01
4665 6395 1.066143 ACAATGCCTGGTCTTCCTACG 60.066 52.381 0.00 0.00 34.23 3.51
4680 6410 0.386113 CTACGAGGCCCTGCTTCTAC 59.614 60.000 0.00 0.00 32.35 2.59
4686 6416 1.282157 AGGCCCTGCTTCTACGAAATT 59.718 47.619 0.00 0.00 0.00 1.82
4701 6431 0.442310 AAATTGACATCGACACGGCG 59.558 50.000 4.80 4.80 0.00 6.46
4736 6466 1.086634 GGTCTGTCATGAGCTTCGCC 61.087 60.000 0.00 0.00 0.00 5.54
4756 6487 1.745489 GCACCGTTTCTAGGCTGGG 60.745 63.158 0.00 0.00 0.00 4.45
4783 6514 2.791383 TGCTGTTGCGCAATTAAACT 57.209 40.000 27.79 0.00 43.34 2.66
4801 6532 0.583438 CTGACCGTGTGCAGTTTCAG 59.417 55.000 0.00 0.00 0.00 3.02
4831 6563 5.067023 GGGACATTCCTGAAGCAGAATAAAG 59.933 44.000 0.00 0.00 36.57 1.85
4848 6581 7.449395 CAGAATAAAGGAATAATGGCCTCATCA 59.551 37.037 3.32 0.00 32.07 3.07
4911 6644 5.440610 ACTTGATGGATGTAGATTTGGTCC 58.559 41.667 0.00 0.00 0.00 4.46
4912 6645 4.071961 TGATGGATGTAGATTTGGTCCG 57.928 45.455 0.00 0.00 0.00 4.79
4940 6673 3.570550 ACTGTCTGTCTGTACTCTGTTCC 59.429 47.826 0.00 0.00 0.00 3.62
4942 6675 4.215908 TGTCTGTCTGTACTCTGTTCCTT 58.784 43.478 0.00 0.00 0.00 3.36
4943 6676 4.038042 TGTCTGTCTGTACTCTGTTCCTTG 59.962 45.833 0.00 0.00 0.00 3.61
4945 6678 4.038042 TCTGTCTGTACTCTGTTCCTTGTG 59.962 45.833 0.00 0.00 0.00 3.33
4948 6682 5.116882 GTCTGTACTCTGTTCCTTGTGTTT 58.883 41.667 0.00 0.00 0.00 2.83
4951 6685 5.492895 TGTACTCTGTTCCTTGTGTTTTGA 58.507 37.500 0.00 0.00 0.00 2.69
4963 6727 6.756074 TCCTTGTGTTTTGATTTGATGTTCAC 59.244 34.615 0.00 0.00 0.00 3.18
4968 6732 7.064371 TGTGTTTTGATTTGATGTTCACCTTTG 59.936 33.333 0.00 0.00 0.00 2.77
4972 6736 4.578516 TGATTTGATGTTCACCTTTGTCGT 59.421 37.500 0.00 0.00 0.00 4.34
4977 6741 1.283736 GTTCACCTTTGTCGTCGTGT 58.716 50.000 0.00 0.00 0.00 4.49
4978 6742 1.005347 GTTCACCTTTGTCGTCGTGTG 60.005 52.381 0.00 0.00 0.00 3.82
4979 6743 1.149361 TCACCTTTGTCGTCGTGTGC 61.149 55.000 0.00 0.00 0.00 4.57
4981 6745 0.461339 ACCTTTGTCGTCGTGTGCTT 60.461 50.000 0.00 0.00 0.00 3.91
4983 6747 0.111704 CTTTGTCGTCGTGTGCTTCG 60.112 55.000 0.00 0.00 0.00 3.79
4984 6748 2.084763 TTTGTCGTCGTGTGCTTCGC 62.085 55.000 0.00 0.00 0.00 4.70
4985 6749 2.729862 GTCGTCGTGTGCTTCGCT 60.730 61.111 0.00 0.00 0.00 4.93
4986 6750 2.729491 TCGTCGTGTGCTTCGCTG 60.729 61.111 0.00 0.00 0.00 5.18
4987 6751 3.767230 CGTCGTGTGCTTCGCTGG 61.767 66.667 0.00 0.00 0.00 4.85
4988 6752 2.661866 GTCGTGTGCTTCGCTGGT 60.662 61.111 0.00 0.00 0.00 4.00
4989 6753 2.108157 TCGTGTGCTTCGCTGGTT 59.892 55.556 0.00 0.00 0.00 3.67
4990 6754 1.954146 TCGTGTGCTTCGCTGGTTC 60.954 57.895 0.00 0.00 0.00 3.62
4991 6755 1.956170 CGTGTGCTTCGCTGGTTCT 60.956 57.895 0.00 0.00 0.00 3.01
4992 6756 1.571460 GTGTGCTTCGCTGGTTCTG 59.429 57.895 0.00 0.00 0.00 3.02
4993 6757 1.146041 TGTGCTTCGCTGGTTCTGT 59.854 52.632 0.00 0.00 0.00 3.41
4994 6758 0.880278 TGTGCTTCGCTGGTTCTGTC 60.880 55.000 0.00 0.00 0.00 3.51
4995 6759 0.601311 GTGCTTCGCTGGTTCTGTCT 60.601 55.000 0.00 0.00 0.00 3.41
4996 6760 0.106708 TGCTTCGCTGGTTCTGTCTT 59.893 50.000 0.00 0.00 0.00 3.01
4997 6761 1.230324 GCTTCGCTGGTTCTGTCTTT 58.770 50.000 0.00 0.00 0.00 2.52
4998 6762 1.604278 GCTTCGCTGGTTCTGTCTTTT 59.396 47.619 0.00 0.00 0.00 2.27
4999 6763 2.033424 GCTTCGCTGGTTCTGTCTTTTT 59.967 45.455 0.00 0.00 0.00 1.94
5041 6805 6.799926 TTTTTAGGCATTTTGAGGATTTGC 57.200 33.333 0.00 0.00 0.00 3.68
5042 6806 5.743636 TTTAGGCATTTTGAGGATTTGCT 57.256 34.783 0.00 0.00 33.86 3.91
5043 6807 5.743636 TTAGGCATTTTGAGGATTTGCTT 57.256 34.783 0.00 0.00 33.86 3.91
5044 6808 4.628963 AGGCATTTTGAGGATTTGCTTT 57.371 36.364 0.00 0.00 33.86 3.51
5045 6809 4.976864 AGGCATTTTGAGGATTTGCTTTT 58.023 34.783 0.00 0.00 33.86 2.27
5046 6810 5.379187 AGGCATTTTGAGGATTTGCTTTTT 58.621 33.333 0.00 0.00 33.86 1.94
5069 8707 2.928334 AGGCATTCTGTCTTATGCTGG 58.072 47.619 0.00 0.00 44.99 4.85
5093 8752 6.751888 GGATTTTCTTTGCGTTGCTACATAAT 59.248 34.615 0.00 0.00 0.00 1.28
5094 8753 6.926280 TTTTCTTTGCGTTGCTACATAATG 57.074 33.333 0.00 0.00 0.00 1.90
5095 8754 5.871465 TTCTTTGCGTTGCTACATAATGA 57.129 34.783 0.00 0.00 0.00 2.57
5096 8755 6.435430 TTCTTTGCGTTGCTACATAATGAT 57.565 33.333 0.00 0.00 0.00 2.45
5097 8756 5.809464 TCTTTGCGTTGCTACATAATGATG 58.191 37.500 0.00 0.00 39.16 3.07
5098 8757 4.550577 TTGCGTTGCTACATAATGATGG 57.449 40.909 0.00 0.00 37.39 3.51
5099 8758 2.877786 TGCGTTGCTACATAATGATGGG 59.122 45.455 0.00 0.00 37.39 4.00
5100 8759 2.350772 GCGTTGCTACATAATGATGGGC 60.351 50.000 0.00 0.00 37.39 5.36
5101 8760 3.141398 CGTTGCTACATAATGATGGGCT 58.859 45.455 10.36 0.00 37.39 5.19
5102 8761 3.565482 CGTTGCTACATAATGATGGGCTT 59.435 43.478 10.36 0.00 37.39 4.35
5103 8762 4.036734 CGTTGCTACATAATGATGGGCTTT 59.963 41.667 10.36 0.00 37.39 3.51
5104 8763 5.450412 CGTTGCTACATAATGATGGGCTTTT 60.450 40.000 10.36 0.00 37.39 2.27
5105 8764 6.340522 GTTGCTACATAATGATGGGCTTTTT 58.659 36.000 10.36 0.00 37.39 1.94
5136 8795 1.708341 AACATAATGATGGGCTGGGC 58.292 50.000 0.00 0.00 37.39 5.36
5137 8796 0.557238 ACATAATGATGGGCTGGGCA 59.443 50.000 0.00 0.00 37.39 5.36
5161 8820 0.390209 GCAAGCCACGGCAAATCAAT 60.390 50.000 11.35 0.00 44.88 2.57
5164 8823 0.247185 AGCCACGGCAAATCAATTGG 59.753 50.000 11.35 0.00 44.88 3.16
5179 8839 0.480690 ATTGGTGTTGTACTGGGCCA 59.519 50.000 5.85 5.85 0.00 5.36
5223 8883 2.434331 CCAGACGGGGCAAAGGAA 59.566 61.111 0.00 0.00 0.00 3.36
5237 8898 0.957395 AAGGAATGTCACGCTGCCAG 60.957 55.000 0.00 0.00 0.00 4.85
5243 8906 2.203195 TCACGCTGCCAGTTTGCT 60.203 55.556 0.00 0.00 0.00 3.91
5246 8909 0.528249 CACGCTGCCAGTTTGCTTTT 60.528 50.000 0.00 0.00 0.00 2.27
5255 8918 0.398381 AGTTTGCTTTTGCCTCCCCA 60.398 50.000 0.00 0.00 46.87 4.96
5262 8925 3.586618 TGCTTTTGCCTCCCCAATAAAAT 59.413 39.130 0.00 0.00 46.87 1.82
5265 8928 6.069731 TGCTTTTGCCTCCCCAATAAAATAAT 60.070 34.615 0.00 0.00 46.87 1.28
5296 8960 0.322906 CCCTGCAGGACTCCTTTTCC 60.323 60.000 34.91 0.00 38.24 3.13
5303 8967 3.506455 GCAGGACTCCTTTTCCTTTTACC 59.494 47.826 0.00 0.00 40.95 2.85
5305 8969 5.325239 CAGGACTCCTTTTCCTTTTACCAT 58.675 41.667 0.00 0.00 40.95 3.55
5308 8972 6.267699 AGGACTCCTTTTCCTTTTACCATTTG 59.732 38.462 0.00 0.00 40.95 2.32
5309 8973 6.041637 GGACTCCTTTTCCTTTTACCATTTGT 59.958 38.462 0.00 0.00 0.00 2.83
5313 8977 8.725405 TCCTTTTCCTTTTACCATTTGTTTTC 57.275 30.769 0.00 0.00 0.00 2.29
5314 8978 7.771361 TCCTTTTCCTTTTACCATTTGTTTTCC 59.229 33.333 0.00 0.00 0.00 3.13
5315 8979 7.012894 CCTTTTCCTTTTACCATTTGTTTTCCC 59.987 37.037 0.00 0.00 0.00 3.97
5316 8980 6.561519 TTCCTTTTACCATTTGTTTTCCCA 57.438 33.333 0.00 0.00 0.00 4.37
5317 8981 6.168270 TCCTTTTACCATTTGTTTTCCCAG 57.832 37.500 0.00 0.00 0.00 4.45
5331 8999 7.027874 TGTTTTCCCAGTAGTAGGATTGATT 57.972 36.000 0.00 0.00 30.55 2.57
5334 9002 6.884472 TTCCCAGTAGTAGGATTGATTTCA 57.116 37.500 0.00 0.00 30.55 2.69
5413 9114 7.394641 GGACCAAAGAAAAGATAGGATGAAGTT 59.605 37.037 0.00 0.00 0.00 2.66
5421 9122 2.408271 TAGGATGAAGTTGCAGCCAG 57.592 50.000 10.76 0.00 46.51 4.85
5435 9138 1.131638 AGCCAGAGACCAACTGAACA 58.868 50.000 0.00 0.00 37.54 3.18
5439 9142 3.654414 CCAGAGACCAACTGAACAGTAC 58.346 50.000 7.90 0.00 41.58 2.73
5440 9143 3.322254 CCAGAGACCAACTGAACAGTACT 59.678 47.826 7.90 0.00 41.58 2.73
5441 9144 4.523173 CCAGAGACCAACTGAACAGTACTA 59.477 45.833 7.90 0.00 41.58 1.82
5442 9145 5.462405 CAGAGACCAACTGAACAGTACTAC 58.538 45.833 7.90 2.00 41.58 2.73
5443 9146 5.009710 CAGAGACCAACTGAACAGTACTACA 59.990 44.000 7.90 0.00 41.58 2.74
5444 9147 5.009811 AGAGACCAACTGAACAGTACTACAC 59.990 44.000 7.90 0.78 41.58 2.90
5445 9148 4.647853 AGACCAACTGAACAGTACTACACA 59.352 41.667 7.90 0.00 41.58 3.72
5446 9149 4.945246 ACCAACTGAACAGTACTACACAG 58.055 43.478 7.90 15.83 41.58 3.66
5447 9150 4.404715 ACCAACTGAACAGTACTACACAGT 59.595 41.667 16.76 16.76 41.58 3.55
5448 9151 5.595542 ACCAACTGAACAGTACTACACAGTA 59.404 40.000 20.36 0.00 41.58 2.74
5449 9152 6.150318 CCAACTGAACAGTACTACACAGTAG 58.850 44.000 20.36 14.37 41.58 2.57
5450 9153 5.961396 ACTGAACAGTACTACACAGTAGG 57.039 43.478 19.34 0.00 40.43 3.18
5451 9154 4.765856 ACTGAACAGTACTACACAGTAGGG 59.234 45.833 19.34 0.00 40.43 3.53
5452 9155 4.084287 TGAACAGTACTACACAGTAGGGG 58.916 47.826 8.83 0.00 37.94 4.79
5453 9156 2.454538 ACAGTACTACACAGTAGGGGC 58.545 52.381 8.83 0.00 37.94 5.80
5454 9157 2.042706 ACAGTACTACACAGTAGGGGCT 59.957 50.000 8.83 1.64 37.94 5.19
5455 9158 2.427453 CAGTACTACACAGTAGGGGCTG 59.573 54.545 8.83 8.93 37.94 4.85
5458 9161 1.006758 ACTACACAGTAGGGGCTGCTA 59.993 52.381 8.83 0.00 39.96 3.49
5603 9335 1.304713 ATGCCTGCCCTGTTTCCTG 60.305 57.895 0.00 0.00 0.00 3.86
5626 9358 2.575993 CCACCACCTCGCTCTCAG 59.424 66.667 0.00 0.00 0.00 3.35
5641 9373 2.010582 CTCAGACCCTACCGCTCAGC 62.011 65.000 0.00 0.00 0.00 4.26
5642 9374 2.055042 CAGACCCTACCGCTCAGCT 61.055 63.158 0.00 0.00 0.00 4.24
5643 9375 1.755008 AGACCCTACCGCTCAGCTC 60.755 63.158 0.00 0.00 0.00 4.09
5644 9376 2.037367 ACCCTACCGCTCAGCTCA 59.963 61.111 0.00 0.00 0.00 4.26
5645 9377 2.010582 GACCCTACCGCTCAGCTCAG 62.011 65.000 0.00 0.00 0.00 3.35
5650 9382 4.399395 CCGCTCAGCTCAGCCCAA 62.399 66.667 3.17 0.00 35.84 4.12
5699 9436 1.204062 CAAACGCGACGACATTGCT 59.796 52.632 15.93 0.00 35.24 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.898152 TCTTTTTCTTTCTTCTTCTCTCTTTCT 57.102 29.630 0.00 0.00 0.00 2.52
5 6 9.844257 TCATCTTTTTCTTTCTTCTTCTCTCTT 57.156 29.630 0.00 0.00 0.00 2.85
6 7 9.844257 TTCATCTTTTTCTTTCTTCTTCTCTCT 57.156 29.630 0.00 0.00 0.00 3.10
8 9 9.625747 ACTTCATCTTTTTCTTTCTTCTTCTCT 57.374 29.630 0.00 0.00 0.00 3.10
13 14 9.183368 ACTCAACTTCATCTTTTTCTTTCTTCT 57.817 29.630 0.00 0.00 0.00 2.85
14 15 9.794685 AACTCAACTTCATCTTTTTCTTTCTTC 57.205 29.630 0.00 0.00 0.00 2.87
15 16 9.578439 CAACTCAACTTCATCTTTTTCTTTCTT 57.422 29.630 0.00 0.00 0.00 2.52
16 17 8.193438 CCAACTCAACTTCATCTTTTTCTTTCT 58.807 33.333 0.00 0.00 0.00 2.52
17 18 7.976175 ACCAACTCAACTTCATCTTTTTCTTTC 59.024 33.333 0.00 0.00 0.00 2.62
18 19 7.840931 ACCAACTCAACTTCATCTTTTTCTTT 58.159 30.769 0.00 0.00 0.00 2.52
19 20 7.410120 ACCAACTCAACTTCATCTTTTTCTT 57.590 32.000 0.00 0.00 0.00 2.52
20 21 7.410120 AACCAACTCAACTTCATCTTTTTCT 57.590 32.000 0.00 0.00 0.00 2.52
21 22 6.414987 CGAACCAACTCAACTTCATCTTTTTC 59.585 38.462 0.00 0.00 0.00 2.29
22 23 6.127730 ACGAACCAACTCAACTTCATCTTTTT 60.128 34.615 0.00 0.00 0.00 1.94
23 24 5.357032 ACGAACCAACTCAACTTCATCTTTT 59.643 36.000 0.00 0.00 0.00 2.27
24 25 4.881850 ACGAACCAACTCAACTTCATCTTT 59.118 37.500 0.00 0.00 0.00 2.52
25 26 4.273480 CACGAACCAACTCAACTTCATCTT 59.727 41.667 0.00 0.00 0.00 2.40
26 27 3.809832 CACGAACCAACTCAACTTCATCT 59.190 43.478 0.00 0.00 0.00 2.90
27 28 3.058914 CCACGAACCAACTCAACTTCATC 60.059 47.826 0.00 0.00 0.00 2.92
28 29 2.878406 CCACGAACCAACTCAACTTCAT 59.122 45.455 0.00 0.00 0.00 2.57
29 30 2.285083 CCACGAACCAACTCAACTTCA 58.715 47.619 0.00 0.00 0.00 3.02
30 31 1.602377 CCCACGAACCAACTCAACTTC 59.398 52.381 0.00 0.00 0.00 3.01
31 32 1.675552 CCCACGAACCAACTCAACTT 58.324 50.000 0.00 0.00 0.00 2.66
32 33 0.179029 CCCCACGAACCAACTCAACT 60.179 55.000 0.00 0.00 0.00 3.16
33 34 0.464916 ACCCCACGAACCAACTCAAC 60.465 55.000 0.00 0.00 0.00 3.18
34 35 0.179040 GACCCCACGAACCAACTCAA 60.179 55.000 0.00 0.00 0.00 3.02
35 36 1.052124 AGACCCCACGAACCAACTCA 61.052 55.000 0.00 0.00 0.00 3.41
36 37 0.602905 CAGACCCCACGAACCAACTC 60.603 60.000 0.00 0.00 0.00 3.01
37 38 1.450211 CAGACCCCACGAACCAACT 59.550 57.895 0.00 0.00 0.00 3.16
38 39 2.258726 GCAGACCCCACGAACCAAC 61.259 63.158 0.00 0.00 0.00 3.77
39 40 1.122632 TAGCAGACCCCACGAACCAA 61.123 55.000 0.00 0.00 0.00 3.67
40 41 1.534476 TAGCAGACCCCACGAACCA 60.534 57.895 0.00 0.00 0.00 3.67
41 42 1.218316 CTAGCAGACCCCACGAACC 59.782 63.158 0.00 0.00 0.00 3.62
42 43 0.824759 ATCTAGCAGACCCCACGAAC 59.175 55.000 0.00 0.00 0.00 3.95
43 44 0.824109 CATCTAGCAGACCCCACGAA 59.176 55.000 0.00 0.00 0.00 3.85
44 45 0.033503 TCATCTAGCAGACCCCACGA 60.034 55.000 0.00 0.00 0.00 4.35
45 46 0.824109 TTCATCTAGCAGACCCCACG 59.176 55.000 0.00 0.00 0.00 4.94
46 47 3.350219 TTTTCATCTAGCAGACCCCAC 57.650 47.619 0.00 0.00 0.00 4.61
65 66 9.502091 GGGAGCAATTTTTAGGATTAAACTTTT 57.498 29.630 0.00 0.00 0.00 2.27
66 67 8.880244 AGGGAGCAATTTTTAGGATTAAACTTT 58.120 29.630 0.00 0.00 0.00 2.66
67 68 8.314021 CAGGGAGCAATTTTTAGGATTAAACTT 58.686 33.333 0.00 0.00 0.00 2.66
68 69 7.454694 ACAGGGAGCAATTTTTAGGATTAAACT 59.545 33.333 0.00 0.00 0.00 2.66
69 70 7.611770 ACAGGGAGCAATTTTTAGGATTAAAC 58.388 34.615 0.00 0.00 0.00 2.01
70 71 7.790782 ACAGGGAGCAATTTTTAGGATTAAA 57.209 32.000 0.00 0.00 0.00 1.52
71 72 8.745590 GTTACAGGGAGCAATTTTTAGGATTAA 58.254 33.333 0.00 0.00 0.00 1.40
72 73 8.113462 AGTTACAGGGAGCAATTTTTAGGATTA 58.887 33.333 0.00 0.00 0.00 1.75
73 74 6.954102 AGTTACAGGGAGCAATTTTTAGGATT 59.046 34.615 0.00 0.00 0.00 3.01
74 75 6.494059 AGTTACAGGGAGCAATTTTTAGGAT 58.506 36.000 0.00 0.00 0.00 3.24
75 76 5.887754 AGTTACAGGGAGCAATTTTTAGGA 58.112 37.500 0.00 0.00 0.00 2.94
76 77 6.590234 AAGTTACAGGGAGCAATTTTTAGG 57.410 37.500 0.00 0.00 0.00 2.69
84 85 9.778741 CATCTTATATTAAGTTACAGGGAGCAA 57.221 33.333 0.00 0.00 0.00 3.91
85 86 8.934697 ACATCTTATATTAAGTTACAGGGAGCA 58.065 33.333 0.00 0.00 0.00 4.26
86 87 9.780186 AACATCTTATATTAAGTTACAGGGAGC 57.220 33.333 0.00 0.00 0.00 4.70
147 148 3.244630 ACCGGTTTTTGGCACTATAGTCA 60.245 43.478 0.00 0.00 0.00 3.41
148 149 3.340928 ACCGGTTTTTGGCACTATAGTC 58.659 45.455 0.00 0.00 0.00 2.59
149 150 3.428413 ACCGGTTTTTGGCACTATAGT 57.572 42.857 0.00 0.00 0.00 2.12
151 152 8.522542 AATATAAACCGGTTTTTGGCACTATA 57.477 30.769 35.69 23.47 34.23 1.31
165 166 4.212636 CCTCCGCAACTTAATATAAACCGG 59.787 45.833 0.00 0.00 34.86 5.28
166 167 4.212636 CCCTCCGCAACTTAATATAAACCG 59.787 45.833 0.00 0.00 0.00 4.44
202 203 6.749036 AATTCCTCATCCTACCTTTCGTAT 57.251 37.500 0.00 0.00 0.00 3.06
226 227 7.037730 GGCATCCCTAGCATATCTCCATAATAT 60.038 40.741 0.00 0.00 0.00 1.28
239 240 2.756042 TTGCGGGCATCCCTAGCAT 61.756 57.895 5.51 0.00 42.67 3.79
246 247 0.963355 TTTACTGGTTGCGGGCATCC 60.963 55.000 12.72 12.72 36.58 3.51
249 250 0.250945 TGATTTACTGGTTGCGGGCA 60.251 50.000 0.00 0.00 0.00 5.36
253 254 4.353737 CATTCCATGATTTACTGGTTGCG 58.646 43.478 0.00 0.00 34.03 4.85
255 256 4.160065 TGCCATTCCATGATTTACTGGTTG 59.840 41.667 0.00 0.00 34.03 3.77
258 259 4.021719 GGATGCCATTCCATGATTTACTGG 60.022 45.833 0.00 0.00 35.72 4.00
272 273 2.029623 GCTTCAGATGTGGATGCCATT 58.970 47.619 0.00 0.00 35.28 3.16
293 294 1.750193 CATGGGCCACGTTCTGTATT 58.250 50.000 9.28 0.00 0.00 1.89
299 300 2.491152 CATGCATGGGCCACGTTC 59.509 61.111 19.40 0.00 40.13 3.95
367 368 2.270527 GCTCCCAGGGACTCTTGC 59.729 66.667 3.01 1.80 34.60 4.01
377 378 3.991051 ACGTGTGGTCGCTCCCAG 61.991 66.667 0.00 0.00 34.43 4.45
406 427 6.511767 GCAAAGTTTTCTGATCTGAAGAACGA 60.512 38.462 20.78 6.97 33.46 3.85
418 439 2.730183 CGACACGCAAAGTTTTCTGA 57.270 45.000 0.00 0.00 0.00 3.27
496 519 0.249868 TGAGTTGAGTTCAGGTGGCG 60.250 55.000 0.00 0.00 0.00 5.69
504 527 2.688507 TCCAGCGATTGAGTTGAGTTC 58.311 47.619 0.00 0.00 0.00 3.01
506 529 3.265791 GAATCCAGCGATTGAGTTGAGT 58.734 45.455 0.00 0.00 38.88 3.41
509 532 2.358957 TGGAATCCAGCGATTGAGTTG 58.641 47.619 0.00 0.00 38.88 3.16
629 652 2.093181 TGCTAAGTGTGCGGGATTATGT 60.093 45.455 0.00 0.00 0.00 2.29
637 660 1.742900 CGACGATGCTAAGTGTGCGG 61.743 60.000 0.00 0.00 0.00 5.69
647 670 1.592669 GTATGGCAGCGACGATGCT 60.593 57.895 33.64 19.94 44.90 3.79
650 673 0.249073 GTCTGTATGGCAGCGACGAT 60.249 55.000 0.00 0.00 44.66 3.73
663 686 4.586306 TCCCAGTCTGTATCTGTCTGTA 57.414 45.455 0.00 0.00 0.00 2.74
664 687 3.458044 TCCCAGTCTGTATCTGTCTGT 57.542 47.619 0.00 0.00 0.00 3.41
665 688 3.004210 CGATCCCAGTCTGTATCTGTCTG 59.996 52.174 0.00 0.00 0.00 3.51
666 689 3.218453 CGATCCCAGTCTGTATCTGTCT 58.782 50.000 0.00 0.00 0.00 3.41
667 690 2.287909 GCGATCCCAGTCTGTATCTGTC 60.288 54.545 0.00 0.00 0.00 3.51
669 692 1.683385 TGCGATCCCAGTCTGTATCTG 59.317 52.381 0.00 1.01 0.00 2.90
744 786 1.887707 GATGGACCGCGATCCCAAC 60.888 63.158 19.20 11.13 38.06 3.77
776 818 1.041437 GGGGTGGTCTTATCTCGGAG 58.959 60.000 0.00 0.00 0.00 4.63
777 819 0.635009 AGGGGTGGTCTTATCTCGGA 59.365 55.000 0.00 0.00 0.00 4.55
796 838 2.686106 GGGGTGGGAGGCGTTCTA 60.686 66.667 0.00 0.00 0.00 2.10
798 840 3.282374 ATTGGGGTGGGAGGCGTTC 62.282 63.158 0.00 0.00 0.00 3.95
800 842 4.047125 CATTGGGGTGGGAGGCGT 62.047 66.667 0.00 0.00 0.00 5.68
805 855 2.204291 AGAGGCATTGGGGTGGGA 60.204 61.111 0.00 0.00 0.00 4.37
809 859 1.002134 CGAACAGAGGCATTGGGGT 60.002 57.895 0.00 0.00 0.00 4.95
810 860 1.002134 ACGAACAGAGGCATTGGGG 60.002 57.895 0.00 0.00 0.00 4.96
819 869 3.243569 ACCAGTTCTTCAGACGAACAGAG 60.244 47.826 19.14 10.83 42.37 3.35
833 883 3.436704 CGTCAATGTGCATTACCAGTTCT 59.563 43.478 0.00 0.00 0.00 3.01
843 897 2.079158 CTTCCTGTCGTCAATGTGCAT 58.921 47.619 0.00 0.00 0.00 3.96
854 908 4.748892 TGCTCTAAATCTTCTTCCTGTCG 58.251 43.478 0.00 0.00 0.00 4.35
861 915 6.432472 CCCAAAACTCTGCTCTAAATCTTCTT 59.568 38.462 0.00 0.00 0.00 2.52
914 968 4.542525 ACCCACCACCCTATAAATCTTCAA 59.457 41.667 0.00 0.00 0.00 2.69
915 969 4.116113 ACCCACCACCCTATAAATCTTCA 58.884 43.478 0.00 0.00 0.00 3.02
928 982 4.401202 CCACAGATTAATTAACCCACCACC 59.599 45.833 0.00 0.00 0.00 4.61
956 1010 1.202604 ACCCAATAATGGTACTCGCGG 60.203 52.381 6.13 0.00 46.01 6.46
974 1031 3.637273 AACAGCTCCCGTCCCACC 61.637 66.667 0.00 0.00 0.00 4.61
976 1033 3.636231 CCAACAGCTCCCGTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
978 1035 2.358737 CACCAACAGCTCCCGTCC 60.359 66.667 0.00 0.00 0.00 4.79
979 1036 1.961277 CACACCAACAGCTCCCGTC 60.961 63.158 0.00 0.00 0.00 4.79
980 1037 2.111043 CACACCAACAGCTCCCGT 59.889 61.111 0.00 0.00 0.00 5.28
981 1038 3.357079 GCACACCAACAGCTCCCG 61.357 66.667 0.00 0.00 0.00 5.14
1027 1084 5.574970 ATGGAGGATAAAGTTCTGGGATC 57.425 43.478 0.00 0.00 0.00 3.36
1029 1086 6.044404 GGATAATGGAGGATAAAGTTCTGGGA 59.956 42.308 0.00 0.00 0.00 4.37
1078 1135 1.202031 GCACTTGTTTATTCTCGCCCG 60.202 52.381 0.00 0.00 0.00 6.13
1140 1200 4.459089 GAGTGGTGGCGAGGGAGC 62.459 72.222 0.00 0.00 0.00 4.70
1141 1201 4.135153 CGAGTGGTGGCGAGGGAG 62.135 72.222 0.00 0.00 0.00 4.30
1371 1446 0.820074 AGAGATCGTAGTGCTCCGGG 60.820 60.000 0.00 0.00 31.43 5.73
1374 1449 1.532007 CCGTAGAGATCGTAGTGCTCC 59.468 57.143 0.00 0.00 31.43 4.70
1498 1583 0.739462 TGCACGTCGCCAAATAGAGG 60.739 55.000 7.38 0.00 41.33 3.69
1500 1585 0.739462 CCTGCACGTCGCCAAATAGA 60.739 55.000 7.38 0.00 41.33 1.98
1501 1586 1.019278 ACCTGCACGTCGCCAAATAG 61.019 55.000 7.38 0.00 41.33 1.73
1502 1587 1.004320 ACCTGCACGTCGCCAAATA 60.004 52.632 7.38 0.00 41.33 1.40
1503 1588 2.281484 ACCTGCACGTCGCCAAAT 60.281 55.556 7.38 0.00 41.33 2.32
1504 1589 3.276091 CACCTGCACGTCGCCAAA 61.276 61.111 7.38 0.00 41.33 3.28
1644 1729 0.912487 TATCAAGGAACGCCCCCAGT 60.912 55.000 0.00 0.00 34.66 4.00
1673 1758 7.926018 AGCCAAACGAAAATTACTCTGAAAATT 59.074 29.630 0.00 0.00 0.00 1.82
1685 1770 3.564511 CGATGACAGCCAAACGAAAATT 58.435 40.909 0.00 0.00 33.05 1.82
1709 1794 2.632987 ACCCGGTGCAGGTTAATATC 57.367 50.000 0.00 0.00 32.05 1.63
1719 1804 3.241493 CACTAATGAACCCGGTGCA 57.759 52.632 0.00 0.00 0.00 4.57
1725 1810 4.501071 TCTAACGAAGCACTAATGAACCC 58.499 43.478 0.00 0.00 0.00 4.11
1798 1886 1.195442 TGGTGCAGGTTATCCCGTCA 61.195 55.000 0.00 0.00 38.74 4.35
1853 1941 8.005466 GCATTCTTACAACACATCACAATTTTG 58.995 33.333 0.00 0.00 0.00 2.44
1856 1944 6.158598 GGCATTCTTACAACACATCACAATT 58.841 36.000 0.00 0.00 0.00 2.32
1857 1945 5.619757 CGGCATTCTTACAACACATCACAAT 60.620 40.000 0.00 0.00 0.00 2.71
1859 1947 3.188254 CGGCATTCTTACAACACATCACA 59.812 43.478 0.00 0.00 0.00 3.58
1865 1953 4.217754 TCAAACGGCATTCTTACAACAC 57.782 40.909 0.00 0.00 0.00 3.32
1875 1963 6.084326 ACTTTTATCAACTCAAACGGCATT 57.916 33.333 0.00 0.00 0.00 3.56
1879 1967 4.212636 ACCGACTTTTATCAACTCAAACGG 59.787 41.667 0.00 0.00 40.94 4.44
1885 1973 5.805994 CCTCAGTACCGACTTTTATCAACTC 59.194 44.000 0.00 0.00 31.73 3.01
1893 1981 3.493873 GGTTGACCTCAGTACCGACTTTT 60.494 47.826 0.00 0.00 31.73 2.27
1900 1988 1.968493 TCACTGGTTGACCTCAGTACC 59.032 52.381 1.34 0.00 41.71 3.34
1904 1992 0.683973 AGCTCACTGGTTGACCTCAG 59.316 55.000 1.34 0.00 36.82 3.35
1905 1993 1.131638 AAGCTCACTGGTTGACCTCA 58.868 50.000 1.34 0.00 34.77 3.86
1906 1994 3.618690 ATAAGCTCACTGGTTGACCTC 57.381 47.619 1.34 0.00 37.56 3.85
1907 1995 4.074970 CAAATAAGCTCACTGGTTGACCT 58.925 43.478 1.34 0.00 37.56 3.85
1908 1996 3.191371 CCAAATAAGCTCACTGGTTGACC 59.809 47.826 0.00 0.00 37.56 4.02
1909 1997 3.191371 CCCAAATAAGCTCACTGGTTGAC 59.809 47.826 0.00 0.00 37.56 3.18
1910 1998 3.073798 TCCCAAATAAGCTCACTGGTTGA 59.926 43.478 0.00 0.00 37.56 3.18
1911 1999 3.191371 GTCCCAAATAAGCTCACTGGTTG 59.809 47.826 0.00 0.00 37.56 3.77
1912 2000 3.181434 TGTCCCAAATAAGCTCACTGGTT 60.181 43.478 0.00 0.00 39.89 3.67
1917 2005 5.163513 CAATGTTGTCCCAAATAAGCTCAC 58.836 41.667 0.00 0.00 0.00 3.51
1920 2008 4.415596 TCCAATGTTGTCCCAAATAAGCT 58.584 39.130 0.00 0.00 0.00 3.74
1949 2037 7.653311 AGTCTAAATTTGCATCAAACACTTTCC 59.347 33.333 0.00 0.00 36.13 3.13
2025 2116 1.561769 ATCCAGAACCCGTGATGGCA 61.562 55.000 0.00 0.00 35.87 4.92
2055 2146 8.670135 ACAACGTCATAAATAAATCGATCCAAA 58.330 29.630 0.00 0.00 0.00 3.28
2112 2203 7.719633 AGAAGTTCTACCATAAGCACTGAAAAA 59.280 33.333 2.75 0.00 0.00 1.94
2681 4288 4.284490 ACTTCTTCTGGTGTTAGCTCATCA 59.716 41.667 0.00 0.00 0.00 3.07
2741 4348 3.370527 CCATGACCCGTCTCCAAGTAATT 60.371 47.826 0.00 0.00 0.00 1.40
2813 4420 6.361433 TGTTTCTCTCACCATACCTTTTTCA 58.639 36.000 0.00 0.00 0.00 2.69
2879 4486 1.813178 GCAAGGGAAGTTGTAAGAGCC 59.187 52.381 0.00 0.00 0.00 4.70
3071 4678 4.558178 CATGTGCAATGTTAGCAAAAGGA 58.442 39.130 0.00 0.00 44.64 3.36
3236 4843 3.016736 GGCCACAATAATAGCACACTGT 58.983 45.455 0.00 0.00 0.00 3.55
3323 4930 5.220557 TGACATTTTCACTGACATATGCG 57.779 39.130 1.58 0.00 0.00 4.73
3344 4951 3.058432 CACATCCAGCTTCAACAAGAGTG 60.058 47.826 0.00 0.00 0.00 3.51
3345 4952 3.144506 CACATCCAGCTTCAACAAGAGT 58.855 45.455 0.00 0.00 0.00 3.24
3596 5203 4.319333 GGAGAGCTGCATGTAATTCATTCG 60.319 45.833 1.02 0.00 34.09 3.34
3712 5320 2.804527 CACTACATCATCGGCATTGGAG 59.195 50.000 0.00 0.00 0.00 3.86
4209 5824 9.809096 CTCACAATCACAGTAAGTATCTACAAT 57.191 33.333 0.00 0.00 0.00 2.71
4211 5826 8.575649 TCTCACAATCACAGTAAGTATCTACA 57.424 34.615 0.00 0.00 0.00 2.74
4257 5984 3.326006 TCTGGAATGTATCTCAGGCCATC 59.674 47.826 5.01 0.00 34.36 3.51
4265 5992 6.150140 GGTGGCATATTTCTGGAATGTATCTC 59.850 42.308 0.00 0.00 0.00 2.75
4350 6077 4.880696 AGTGCCATCTCTTAAGCATTTCTC 59.119 41.667 0.00 0.00 37.60 2.87
4357 6084 3.244044 CCCTCTAGTGCCATCTCTTAAGC 60.244 52.174 0.00 0.00 0.00 3.09
4380 6107 5.770663 AGTAGACGCAGAGTGTTCCATATAT 59.229 40.000 0.00 0.00 0.00 0.86
4560 6290 1.237285 GCAGCACAAAGTCGGATGGT 61.237 55.000 0.00 0.00 0.00 3.55
4566 6296 1.061131 CTTATCGGCAGCACAAAGTCG 59.939 52.381 0.00 0.00 0.00 4.18
4659 6389 2.038975 AAGCAGGGCCTCGTAGGA 59.961 61.111 0.95 0.00 37.67 2.94
4665 6395 0.249398 TTTCGTAGAAGCAGGGCCTC 59.751 55.000 0.95 0.00 45.90 4.70
4680 6410 1.526986 GCCGTGTCGATGTCAATTTCG 60.527 52.381 0.00 0.00 36.72 3.46
4686 6416 2.126618 GTCGCCGTGTCGATGTCA 60.127 61.111 0.00 0.00 40.84 3.58
4701 6431 0.392595 GACCCATGACTTTCCCGGTC 60.393 60.000 0.00 0.00 33.57 4.79
4736 6466 2.100631 CAGCCTAGAAACGGTGCCG 61.101 63.158 9.29 9.29 46.03 5.69
4756 6487 3.357079 CGCAACAGCACAGGACCC 61.357 66.667 0.00 0.00 0.00 4.46
4779 6510 4.954933 ACTGCACACGGTCAGTTT 57.045 50.000 0.00 0.00 40.32 2.66
4782 6513 0.583438 CTGAAACTGCACACGGTCAG 59.417 55.000 0.00 0.00 32.87 3.51
4783 6514 0.107897 ACTGAAACTGCACACGGTCA 60.108 50.000 0.00 0.00 32.87 4.02
4801 6532 2.029020 GCTTCAGGAATGTCCCCAAAAC 60.029 50.000 0.00 0.00 37.19 2.43
4831 6563 3.152341 CCACTGATGAGGCCATTATTCC 58.848 50.000 5.01 0.00 32.09 3.01
4848 6581 1.228245 ACAATCGCACCAAGCCACT 60.228 52.632 0.00 0.00 41.38 4.00
4878 6611 9.911788 ATCTACATCCATCAAGTTACTGAAATT 57.088 29.630 0.00 0.00 0.00 1.82
4911 6644 3.690139 AGTACAGACAGACAGTATGGTCG 59.310 47.826 0.00 0.00 43.66 4.79
4912 6645 4.944930 AGAGTACAGACAGACAGTATGGTC 59.055 45.833 0.00 0.00 43.66 4.02
4919 6652 3.823873 AGGAACAGAGTACAGACAGACAG 59.176 47.826 0.00 0.00 0.00 3.51
4940 6673 6.757947 AGGTGAACATCAAATCAAAACACAAG 59.242 34.615 0.00 0.00 0.00 3.16
4942 6675 6.219417 AGGTGAACATCAAATCAAAACACA 57.781 33.333 0.00 0.00 0.00 3.72
4943 6676 7.064490 ACAAAGGTGAACATCAAATCAAAACAC 59.936 33.333 0.00 0.00 0.00 3.32
4945 6678 7.515059 CGACAAAGGTGAACATCAAATCAAAAC 60.515 37.037 0.00 0.00 0.00 2.43
4948 6682 5.067153 ACGACAAAGGTGAACATCAAATCAA 59.933 36.000 0.00 0.00 0.00 2.57
4951 6685 4.319477 CGACGACAAAGGTGAACATCAAAT 60.319 41.667 0.00 0.00 0.00 2.32
4963 6727 0.232303 GAAGCACACGACGACAAAGG 59.768 55.000 0.00 0.00 0.00 3.11
4979 6743 3.971032 AAAAAGACAGAACCAGCGAAG 57.029 42.857 0.00 0.00 0.00 3.79
5018 6782 6.532826 AGCAAATCCTCAAAATGCCTAAAAA 58.467 32.000 0.00 0.00 37.73 1.94
5019 6783 6.112927 AGCAAATCCTCAAAATGCCTAAAA 57.887 33.333 0.00 0.00 37.73 1.52
5020 6784 5.743636 AGCAAATCCTCAAAATGCCTAAA 57.256 34.783 0.00 0.00 37.73 1.85
5021 6785 5.743636 AAGCAAATCCTCAAAATGCCTAA 57.256 34.783 0.00 0.00 37.73 2.69
5022 6786 5.743636 AAAGCAAATCCTCAAAATGCCTA 57.256 34.783 0.00 0.00 37.73 3.93
5023 6787 4.628963 AAAGCAAATCCTCAAAATGCCT 57.371 36.364 0.00 0.00 37.73 4.75
5024 6788 5.694231 AAAAAGCAAATCCTCAAAATGCC 57.306 34.783 0.00 0.00 37.73 4.40
5052 6816 7.330900 AGAAAATCCAGCATAAGACAGAATG 57.669 36.000 0.00 0.00 46.00 2.67
5053 6817 7.951347 AAGAAAATCCAGCATAAGACAGAAT 57.049 32.000 0.00 0.00 0.00 2.40
5058 6822 4.795278 CGCAAAGAAAATCCAGCATAAGAC 59.205 41.667 0.00 0.00 0.00 3.01
5060 6824 4.737054 ACGCAAAGAAAATCCAGCATAAG 58.263 39.130 0.00 0.00 0.00 1.73
5062 6826 4.484236 CAACGCAAAGAAAATCCAGCATA 58.516 39.130 0.00 0.00 0.00 3.14
5069 8707 7.484641 TCATTATGTAGCAACGCAAAGAAAATC 59.515 33.333 0.00 0.00 0.00 2.17
5105 8764 8.257306 GCCCATCATTATGTTTTCCTCTAAAAA 58.743 33.333 0.00 0.00 38.76 1.94
5106 8765 7.619302 AGCCCATCATTATGTTTTCCTCTAAAA 59.381 33.333 0.00 0.00 34.66 1.52
5107 8766 7.068593 CAGCCCATCATTATGTTTTCCTCTAAA 59.931 37.037 0.00 0.00 0.00 1.85
5108 8767 6.547141 CAGCCCATCATTATGTTTTCCTCTAA 59.453 38.462 0.00 0.00 0.00 2.10
5109 8768 6.064060 CAGCCCATCATTATGTTTTCCTCTA 58.936 40.000 0.00 0.00 0.00 2.43
5110 8769 4.891756 CAGCCCATCATTATGTTTTCCTCT 59.108 41.667 0.00 0.00 0.00 3.69
5111 8770 4.038402 CCAGCCCATCATTATGTTTTCCTC 59.962 45.833 0.00 0.00 0.00 3.71
5112 8771 3.962718 CCAGCCCATCATTATGTTTTCCT 59.037 43.478 0.00 0.00 0.00 3.36
5113 8772 3.070015 CCCAGCCCATCATTATGTTTTCC 59.930 47.826 0.00 0.00 0.00 3.13
5114 8773 3.493176 GCCCAGCCCATCATTATGTTTTC 60.493 47.826 0.00 0.00 0.00 2.29
5115 8774 2.435437 GCCCAGCCCATCATTATGTTTT 59.565 45.455 0.00 0.00 0.00 2.43
5116 8775 2.041701 GCCCAGCCCATCATTATGTTT 58.958 47.619 0.00 0.00 0.00 2.83
5117 8776 1.063038 TGCCCAGCCCATCATTATGTT 60.063 47.619 0.00 0.00 0.00 2.71
5118 8777 0.557238 TGCCCAGCCCATCATTATGT 59.443 50.000 0.00 0.00 0.00 2.29
5119 8778 1.254026 CTGCCCAGCCCATCATTATG 58.746 55.000 0.00 0.00 0.00 1.90
5120 8779 0.113776 CCTGCCCAGCCCATCATTAT 59.886 55.000 0.00 0.00 0.00 1.28
5121 8780 1.538167 CCTGCCCAGCCCATCATTA 59.462 57.895 0.00 0.00 0.00 1.90
5122 8781 2.281091 CCTGCCCAGCCCATCATT 59.719 61.111 0.00 0.00 0.00 2.57
5123 8782 4.534824 GCCTGCCCAGCCCATCAT 62.535 66.667 0.00 0.00 0.00 2.45
5148 8807 2.437200 ACACCAATTGATTTGCCGTG 57.563 45.000 7.12 7.08 35.10 4.94
5161 8820 0.466555 GTGGCCCAGTACAACACCAA 60.467 55.000 0.00 0.00 0.00 3.67
5164 8823 0.605589 GGAGTGGCCCAGTACAACAC 60.606 60.000 0.00 0.00 0.00 3.32
5214 8874 0.109597 CAGCGTGACATTCCTTTGCC 60.110 55.000 0.00 0.00 0.00 4.52
5216 8876 0.109597 GGCAGCGTGACATTCCTTTG 60.110 55.000 0.00 0.00 0.00 2.77
5217 8877 0.537143 TGGCAGCGTGACATTCCTTT 60.537 50.000 0.00 0.00 24.43 3.11
5219 8879 1.376424 CTGGCAGCGTGACATTCCT 60.376 57.895 0.00 0.00 33.12 3.36
5223 8883 1.951510 CAAACTGGCAGCGTGACAT 59.048 52.632 15.89 0.00 33.12 3.06
5237 8898 0.467804 TTGGGGAGGCAAAAGCAAAC 59.532 50.000 0.00 0.00 0.00 2.93
5246 8909 7.936301 GCAAATTATTATTTTATTGGGGAGGCA 59.064 33.333 0.00 0.00 31.63 4.75
5262 8925 5.719085 TCCTGCAGGGAAAAGCAAATTATTA 59.281 36.000 32.23 3.66 41.91 0.98
5265 8928 3.505386 TCCTGCAGGGAAAAGCAAATTA 58.495 40.909 32.23 5.30 41.91 1.40
5296 8960 7.722363 ACTACTGGGAAAACAAATGGTAAAAG 58.278 34.615 0.00 0.00 0.00 2.27
5303 8967 7.393234 TCAATCCTACTACTGGGAAAACAAATG 59.607 37.037 0.00 0.00 35.08 2.32
5305 8969 6.843752 TCAATCCTACTACTGGGAAAACAAA 58.156 36.000 0.00 0.00 35.08 2.83
5308 8972 7.610305 TGAAATCAATCCTACTACTGGGAAAAC 59.390 37.037 0.00 0.00 35.08 2.43
5309 8973 7.695055 TGAAATCAATCCTACTACTGGGAAAA 58.305 34.615 0.00 0.00 35.08 2.29
5313 8977 9.627123 TTTTATGAAATCAATCCTACTACTGGG 57.373 33.333 0.00 0.00 0.00 4.45
5350 9018 8.721133 AACCATTTTAGTTGGTCCTTCTTAAT 57.279 30.769 0.00 0.00 46.75 1.40
5351 9019 8.541899 AAACCATTTTAGTTGGTCCTTCTTAA 57.458 30.769 0.00 0.00 46.75 1.85
5352 9020 9.643735 TTAAACCATTTTAGTTGGTCCTTCTTA 57.356 29.630 0.00 0.00 46.75 2.10
5353 9021 8.541899 TTAAACCATTTTAGTTGGTCCTTCTT 57.458 30.769 0.00 0.00 46.75 2.52
5354 9022 8.721133 ATTAAACCATTTTAGTTGGTCCTTCT 57.279 30.769 0.00 0.00 46.75 2.85
5355 9023 9.772973 AAATTAAACCATTTTAGTTGGTCCTTC 57.227 29.630 0.00 0.00 46.75 3.46
5389 9057 7.309438 GCAACTTCATCCTATCTTTTCTTTGGT 60.309 37.037 0.00 0.00 0.00 3.67
5400 9099 2.877168 CTGGCTGCAACTTCATCCTATC 59.123 50.000 0.50 0.00 0.00 2.08
5413 9114 1.071987 CAGTTGGTCTCTGGCTGCA 59.928 57.895 0.50 0.00 0.00 4.41
5421 9122 5.221130 GTGTAGTACTGTTCAGTTGGTCTC 58.779 45.833 10.74 0.00 0.00 3.36
5435 9138 2.736347 CAGCCCCTACTGTGTAGTACT 58.264 52.381 0.00 0.00 38.36 2.73
5439 9142 1.683917 CTAGCAGCCCCTACTGTGTAG 59.316 57.143 0.00 0.00 39.96 2.74
5440 9143 1.006758 ACTAGCAGCCCCTACTGTGTA 59.993 52.381 0.00 0.00 39.96 2.90
5441 9144 0.252284 ACTAGCAGCCCCTACTGTGT 60.252 55.000 0.00 0.00 39.96 3.72
5442 9145 1.683917 CTACTAGCAGCCCCTACTGTG 59.316 57.143 0.00 0.00 39.96 3.66
5443 9146 2.030045 GCTACTAGCAGCCCCTACTGT 61.030 57.143 3.30 0.00 41.89 3.55
5444 9147 0.676736 GCTACTAGCAGCCCCTACTG 59.323 60.000 3.30 0.00 41.89 2.74
5445 9148 0.558712 AGCTACTAGCAGCCCCTACT 59.441 55.000 11.50 0.00 45.56 2.57
5446 9149 0.676736 CAGCTACTAGCAGCCCCTAC 59.323 60.000 11.50 0.00 45.56 3.18
5447 9150 1.115930 GCAGCTACTAGCAGCCCCTA 61.116 60.000 11.50 0.00 46.36 3.53
5448 9151 2.439104 GCAGCTACTAGCAGCCCCT 61.439 63.158 11.50 0.00 46.36 4.79
5449 9152 2.110006 GCAGCTACTAGCAGCCCC 59.890 66.667 11.50 0.00 46.36 5.80
5453 9156 0.942962 GCATTGGCAGCTACTAGCAG 59.057 55.000 10.73 3.49 45.56 4.24
5454 9157 0.464373 GGCATTGGCAGCTACTAGCA 60.464 55.000 10.73 0.00 41.01 3.49
5455 9158 1.169034 GGGCATTGGCAGCTACTAGC 61.169 60.000 12.70 0.00 43.71 3.42
5458 9161 2.276740 GGGGCATTGGCAGCTACT 59.723 61.111 12.70 0.00 43.71 2.57
5468 9171 1.322538 GCCATTGACTTCGGGGCATT 61.323 55.000 0.00 0.00 44.01 3.56
5469 9172 1.754234 GCCATTGACTTCGGGGCAT 60.754 57.895 0.00 0.00 44.01 4.40
5626 9358 2.010582 CTGAGCTGAGCGGTAGGGTC 62.011 65.000 0.00 10.27 43.52 4.46
5663 9400 3.607370 GACCGGTGAAGTGGCCTCC 62.607 68.421 14.63 0.00 0.00 4.30
5699 9436 2.749839 GTTGCTACCATGCGGGCA 60.750 61.111 0.00 0.00 42.05 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.