Multiple sequence alignment - TraesCS5D01G235300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G235300 chr5D 100.000 2942 0 0 666 3607 344398613 344401554 0.000000e+00 5433.0
1 TraesCS5D01G235300 chr5D 100.000 326 0 0 1 326 344397948 344398273 1.430000e-168 603.0
2 TraesCS5D01G235300 chr5B 91.960 2388 86 41 707 3036 407818575 407816236 0.000000e+00 3249.0
3 TraesCS5D01G235300 chr5B 92.750 400 10 6 3210 3607 407816123 407815741 8.750000e-156 560.0
4 TraesCS5D01G235300 chr5A 87.985 2139 94 49 667 2715 448089721 448091786 0.000000e+00 2375.0
5 TraesCS5D01G235300 chr5A 83.806 494 34 16 3093 3552 448092347 448092828 9.260000e-116 427.0
6 TraesCS5D01G235300 chr5A 84.956 226 18 8 2786 3009 448092098 448092309 7.840000e-52 215.0
7 TraesCS5D01G235300 chr2D 88.205 195 15 5 2049 2236 527547519 527547712 3.620000e-55 226.0
8 TraesCS5D01G235300 chr2A 88.021 192 17 5 2051 2236 672415937 672416128 4.690000e-54 222.0
9 TraesCS5D01G235300 chr2B 87.692 195 16 5 2049 2236 624892074 624892267 1.690000e-53 220.0
10 TraesCS5D01G235300 chr4B 90.244 123 12 0 2045 2167 491465480 491465602 1.040000e-35 161.0
11 TraesCS5D01G235300 chr4B 83.871 124 15 5 1634 1757 491464652 491464770 2.940000e-21 113.0
12 TraesCS5D01G235300 chr4A 90.244 123 12 0 2045 2167 56145029 56145151 1.040000e-35 161.0
13 TraesCS5D01G235300 chr4A 85.849 106 15 0 1652 1757 56144267 56144372 2.940000e-21 113.0
14 TraesCS5D01G235300 chr1B 82.353 204 19 8 2051 2238 418106021 418105819 1.040000e-35 161.0
15 TraesCS5D01G235300 chr1B 88.542 96 11 0 1664 1759 418106316 418106221 2.280000e-22 117.0
16 TraesCS5D01G235300 chr1A 82.353 204 19 8 2051 2238 387840975 387840773 1.040000e-35 161.0
17 TraesCS5D01G235300 chr1A 86.869 99 10 3 1664 1759 387841278 387841180 1.370000e-19 108.0
18 TraesCS5D01G235300 chr1D 81.773 203 22 7 2051 2238 308459629 308459427 4.820000e-34 156.0
19 TraesCS5D01G235300 chr1D 86.869 99 10 3 1664 1759 308459931 308459833 1.370000e-19 108.0
20 TraesCS5D01G235300 chr4D 83.962 106 17 0 1652 1757 398669583 398669688 6.370000e-18 102.0
21 TraesCS5D01G235300 chr7D 85.366 82 12 0 1837 1918 46670548 46670467 6.420000e-13 86.1
22 TraesCS5D01G235300 chr7D 82.143 84 15 0 1838 1921 46711921 46711838 5.000000e-09 73.1
23 TraesCS5D01G235300 chr7D 100.000 28 0 0 2901 2928 574923602 574923575 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G235300 chr5D 344397948 344401554 3606 False 3018.000000 5433 100.000000 1 3607 2 chr5D.!!$F1 3606
1 TraesCS5D01G235300 chr5B 407815741 407818575 2834 True 1904.500000 3249 92.355000 707 3607 2 chr5B.!!$R1 2900
2 TraesCS5D01G235300 chr5A 448089721 448092828 3107 False 1005.666667 2375 85.582333 667 3552 3 chr5A.!!$F1 2885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.103208 CACGGCTCCAGTCCATCTAC 59.897 60.0 0.00 0.0 0.0 2.59 F
309 310 0.109153 TGCTGCACAGTTCCAGACAT 59.891 50.0 0.00 0.0 0.0 3.06 F
1377 1442 0.818938 TCGCCGGTGAAATAGCAGTA 59.181 50.0 17.09 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1071 0.683973 CTCCATGGGAGGGATCGAAG 59.316 60.0 13.02 0.0 45.43 3.79 R
2169 2253 0.035056 GCATGTAGAAGGGGTGCACT 60.035 55.0 17.98 0.0 35.93 4.40 R
2887 3268 0.177141 GCCAGTAGTGGGCGTCAATA 59.823 55.0 18.46 0.0 45.17 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.525619 TATGAACACACACGGCTCC 57.474 52.632 0.00 0.00 0.00 4.70
19 20 0.682292 TATGAACACACACGGCTCCA 59.318 50.000 0.00 0.00 0.00 3.86
20 21 0.603707 ATGAACACACACGGCTCCAG 60.604 55.000 0.00 0.00 0.00 3.86
21 22 1.227556 GAACACACACGGCTCCAGT 60.228 57.895 0.00 0.00 0.00 4.00
22 23 1.222115 GAACACACACGGCTCCAGTC 61.222 60.000 0.00 0.00 0.00 3.51
23 24 2.357517 CACACACGGCTCCAGTCC 60.358 66.667 0.00 0.00 0.00 3.85
24 25 2.842462 ACACACGGCTCCAGTCCA 60.842 61.111 0.00 0.00 0.00 4.02
25 26 2.217038 ACACACGGCTCCAGTCCAT 61.217 57.895 0.00 0.00 0.00 3.41
26 27 1.448540 CACACGGCTCCAGTCCATC 60.449 63.158 0.00 0.00 0.00 3.51
27 28 1.610673 ACACGGCTCCAGTCCATCT 60.611 57.895 0.00 0.00 0.00 2.90
28 29 0.324368 ACACGGCTCCAGTCCATCTA 60.324 55.000 0.00 0.00 0.00 1.98
29 30 0.103208 CACGGCTCCAGTCCATCTAC 59.897 60.000 0.00 0.00 0.00 2.59
30 31 1.360551 CGGCTCCAGTCCATCTACG 59.639 63.158 0.00 0.00 0.00 3.51
31 32 1.384989 CGGCTCCAGTCCATCTACGT 61.385 60.000 0.00 0.00 0.00 3.57
32 33 1.688772 GGCTCCAGTCCATCTACGTA 58.311 55.000 0.00 0.00 0.00 3.57
33 34 1.337387 GGCTCCAGTCCATCTACGTAC 59.663 57.143 0.00 0.00 0.00 3.67
34 35 2.299521 GCTCCAGTCCATCTACGTACT 58.700 52.381 0.00 0.00 0.00 2.73
35 36 2.033550 GCTCCAGTCCATCTACGTACTG 59.966 54.545 6.88 6.88 39.22 2.74
36 37 2.022195 TCCAGTCCATCTACGTACTGC 58.978 52.381 8.13 0.00 38.39 4.40
37 38 1.749063 CCAGTCCATCTACGTACTGCA 59.251 52.381 8.13 0.00 38.39 4.41
38 39 2.479730 CCAGTCCATCTACGTACTGCAC 60.480 54.545 8.13 0.00 38.39 4.57
39 40 2.163613 CAGTCCATCTACGTACTGCACA 59.836 50.000 1.25 0.00 33.59 4.57
40 41 3.024547 AGTCCATCTACGTACTGCACAT 58.975 45.455 0.00 0.00 0.00 3.21
41 42 3.447586 AGTCCATCTACGTACTGCACATT 59.552 43.478 0.00 0.00 0.00 2.71
42 43 3.797256 GTCCATCTACGTACTGCACATTC 59.203 47.826 0.00 0.00 0.00 2.67
43 44 3.445805 TCCATCTACGTACTGCACATTCA 59.554 43.478 0.00 0.00 0.00 2.57
44 45 4.099419 TCCATCTACGTACTGCACATTCAT 59.901 41.667 0.00 0.00 0.00 2.57
45 46 4.445718 CCATCTACGTACTGCACATTCATC 59.554 45.833 0.00 0.00 0.00 2.92
46 47 4.712122 TCTACGTACTGCACATTCATCA 57.288 40.909 0.00 0.00 0.00 3.07
47 48 5.262588 TCTACGTACTGCACATTCATCAT 57.737 39.130 0.00 0.00 0.00 2.45
48 49 5.660460 TCTACGTACTGCACATTCATCATT 58.340 37.500 0.00 0.00 0.00 2.57
49 50 4.864916 ACGTACTGCACATTCATCATTC 57.135 40.909 0.00 0.00 0.00 2.67
50 51 3.623060 ACGTACTGCACATTCATCATTCC 59.377 43.478 0.00 0.00 0.00 3.01
51 52 3.302675 CGTACTGCACATTCATCATTCCG 60.303 47.826 0.00 0.00 0.00 4.30
52 53 1.402968 ACTGCACATTCATCATTCCGC 59.597 47.619 0.00 0.00 0.00 5.54
53 54 0.740149 TGCACATTCATCATTCCGCC 59.260 50.000 0.00 0.00 0.00 6.13
54 55 1.027357 GCACATTCATCATTCCGCCT 58.973 50.000 0.00 0.00 0.00 5.52
55 56 1.268896 GCACATTCATCATTCCGCCTG 60.269 52.381 0.00 0.00 0.00 4.85
56 57 2.019249 CACATTCATCATTCCGCCTGT 58.981 47.619 0.00 0.00 0.00 4.00
57 58 2.424601 CACATTCATCATTCCGCCTGTT 59.575 45.455 0.00 0.00 0.00 3.16
58 59 3.091545 ACATTCATCATTCCGCCTGTTT 58.908 40.909 0.00 0.00 0.00 2.83
59 60 3.119388 ACATTCATCATTCCGCCTGTTTG 60.119 43.478 0.00 0.00 0.00 2.93
60 61 1.462616 TCATCATTCCGCCTGTTTGG 58.537 50.000 0.00 0.00 39.35 3.28
61 62 1.004161 TCATCATTCCGCCTGTTTGGA 59.996 47.619 0.00 0.00 38.35 3.53
63 64 1.988293 TCATTCCGCCTGTTTGGAAA 58.012 45.000 0.00 0.00 46.65 3.13
64 65 2.311463 TCATTCCGCCTGTTTGGAAAA 58.689 42.857 0.00 0.00 46.65 2.29
65 66 2.896685 TCATTCCGCCTGTTTGGAAAAT 59.103 40.909 0.00 0.00 46.65 1.82
66 67 4.082845 TCATTCCGCCTGTTTGGAAAATA 58.917 39.130 0.00 0.00 46.65 1.40
67 68 4.709397 TCATTCCGCCTGTTTGGAAAATAT 59.291 37.500 0.00 0.00 46.65 1.28
68 69 4.712122 TTCCGCCTGTTTGGAAAATATC 57.288 40.909 0.00 0.00 41.16 1.63
69 70 3.963129 TCCGCCTGTTTGGAAAATATCT 58.037 40.909 0.00 0.00 38.35 1.98
70 71 4.340617 TCCGCCTGTTTGGAAAATATCTT 58.659 39.130 0.00 0.00 38.35 2.40
71 72 4.770010 TCCGCCTGTTTGGAAAATATCTTT 59.230 37.500 0.00 0.00 38.35 2.52
72 73 5.245075 TCCGCCTGTTTGGAAAATATCTTTT 59.755 36.000 0.00 0.00 37.28 2.27
73 74 5.931724 CCGCCTGTTTGGAAAATATCTTTTT 59.068 36.000 0.00 0.00 34.73 1.94
74 75 6.090763 CCGCCTGTTTGGAAAATATCTTTTTC 59.909 38.462 2.89 2.89 34.73 2.29
88 89 8.479313 AATATCTTTTTCCATTCCTTTTTCGC 57.521 30.769 0.00 0.00 0.00 4.70
89 90 4.295051 TCTTTTTCCATTCCTTTTTCGCG 58.705 39.130 0.00 0.00 0.00 5.87
90 91 2.058913 TTTCCATTCCTTTTTCGCGC 57.941 45.000 0.00 0.00 0.00 6.86
91 92 0.242555 TTCCATTCCTTTTTCGCGCC 59.757 50.000 0.00 0.00 0.00 6.53
92 93 1.153842 CCATTCCTTTTTCGCGCCC 60.154 57.895 0.00 0.00 0.00 6.13
93 94 1.583986 CATTCCTTTTTCGCGCCCA 59.416 52.632 0.00 0.00 0.00 5.36
94 95 0.173255 CATTCCTTTTTCGCGCCCAT 59.827 50.000 0.00 0.00 0.00 4.00
95 96 0.455815 ATTCCTTTTTCGCGCCCATC 59.544 50.000 0.00 0.00 0.00 3.51
96 97 0.891449 TTCCTTTTTCGCGCCCATCA 60.891 50.000 0.00 0.00 0.00 3.07
97 98 0.679640 TCCTTTTTCGCGCCCATCAT 60.680 50.000 0.00 0.00 0.00 2.45
98 99 0.173255 CCTTTTTCGCGCCCATCATT 59.827 50.000 0.00 0.00 0.00 2.57
99 100 1.548986 CTTTTTCGCGCCCATCATTC 58.451 50.000 0.00 0.00 0.00 2.67
100 101 1.133025 CTTTTTCGCGCCCATCATTCT 59.867 47.619 0.00 0.00 0.00 2.40
101 102 1.173043 TTTTCGCGCCCATCATTCTT 58.827 45.000 0.00 0.00 0.00 2.52
102 103 0.451383 TTTCGCGCCCATCATTCTTG 59.549 50.000 0.00 0.00 0.00 3.02
103 104 1.992233 TTCGCGCCCATCATTCTTGC 61.992 55.000 0.00 0.00 0.00 4.01
104 105 2.414594 GCGCCCATCATTCTTGCC 59.585 61.111 0.00 0.00 0.00 4.52
105 106 2.417257 GCGCCCATCATTCTTGCCA 61.417 57.895 0.00 0.00 0.00 4.92
106 107 1.434696 CGCCCATCATTCTTGCCAC 59.565 57.895 0.00 0.00 0.00 5.01
107 108 1.818555 GCCCATCATTCTTGCCACC 59.181 57.895 0.00 0.00 0.00 4.61
108 109 2.008268 GCCCATCATTCTTGCCACCG 62.008 60.000 0.00 0.00 0.00 4.94
109 110 0.680921 CCCATCATTCTTGCCACCGT 60.681 55.000 0.00 0.00 0.00 4.83
110 111 1.408127 CCCATCATTCTTGCCACCGTA 60.408 52.381 0.00 0.00 0.00 4.02
111 112 2.575532 CCATCATTCTTGCCACCGTAT 58.424 47.619 0.00 0.00 0.00 3.06
112 113 2.549754 CCATCATTCTTGCCACCGTATC 59.450 50.000 0.00 0.00 0.00 2.24
113 114 3.205338 CATCATTCTTGCCACCGTATCA 58.795 45.455 0.00 0.00 0.00 2.15
114 115 2.627945 TCATTCTTGCCACCGTATCAC 58.372 47.619 0.00 0.00 0.00 3.06
115 116 2.027653 TCATTCTTGCCACCGTATCACA 60.028 45.455 0.00 0.00 0.00 3.58
116 117 2.779755 TTCTTGCCACCGTATCACAT 57.220 45.000 0.00 0.00 0.00 3.21
117 118 3.897141 TTCTTGCCACCGTATCACATA 57.103 42.857 0.00 0.00 0.00 2.29
118 119 3.897141 TCTTGCCACCGTATCACATAA 57.103 42.857 0.00 0.00 0.00 1.90
119 120 3.792401 TCTTGCCACCGTATCACATAAG 58.208 45.455 0.00 0.00 0.00 1.73
120 121 1.948104 TGCCACCGTATCACATAAGC 58.052 50.000 0.00 0.00 0.00 3.09
121 122 1.208293 TGCCACCGTATCACATAAGCA 59.792 47.619 0.00 0.00 0.00 3.91
122 123 2.158827 TGCCACCGTATCACATAAGCAT 60.159 45.455 0.00 0.00 0.00 3.79
123 124 2.224079 GCCACCGTATCACATAAGCATG 59.776 50.000 0.00 0.00 38.21 4.06
124 125 2.807967 CCACCGTATCACATAAGCATGG 59.192 50.000 0.00 0.00 36.39 3.66
125 126 3.494223 CCACCGTATCACATAAGCATGGA 60.494 47.826 0.00 0.00 36.39 3.41
126 127 4.126437 CACCGTATCACATAAGCATGGAA 58.874 43.478 0.00 0.00 36.39 3.53
127 128 4.574421 CACCGTATCACATAAGCATGGAAA 59.426 41.667 0.00 0.00 36.39 3.13
128 129 5.239306 CACCGTATCACATAAGCATGGAAAT 59.761 40.000 0.00 0.00 36.39 2.17
129 130 5.239306 ACCGTATCACATAAGCATGGAAATG 59.761 40.000 0.00 0.00 36.39 2.32
130 131 5.469760 CCGTATCACATAAGCATGGAAATGA 59.530 40.000 0.00 0.00 36.39 2.57
131 132 6.017192 CCGTATCACATAAGCATGGAAATGAA 60.017 38.462 0.00 0.00 36.39 2.57
132 133 7.308770 CCGTATCACATAAGCATGGAAATGAAT 60.309 37.037 0.00 0.00 36.39 2.57
133 134 8.720562 CGTATCACATAAGCATGGAAATGAATA 58.279 33.333 0.00 0.00 36.39 1.75
134 135 9.831737 GTATCACATAAGCATGGAAATGAATAC 57.168 33.333 0.00 0.00 36.39 1.89
135 136 7.275888 TCACATAAGCATGGAAATGAATACC 57.724 36.000 0.00 0.00 36.39 2.73
136 137 6.265196 TCACATAAGCATGGAAATGAATACCC 59.735 38.462 0.00 0.00 36.39 3.69
137 138 6.266103 CACATAAGCATGGAAATGAATACCCT 59.734 38.462 0.00 0.00 36.39 4.34
138 139 6.491403 ACATAAGCATGGAAATGAATACCCTC 59.509 38.462 0.00 0.00 36.39 4.30
139 140 3.837355 AGCATGGAAATGAATACCCTCC 58.163 45.455 0.00 0.00 0.00 4.30
140 141 2.893489 GCATGGAAATGAATACCCTCCC 59.107 50.000 0.00 0.00 0.00 4.30
141 142 3.437052 GCATGGAAATGAATACCCTCCCT 60.437 47.826 0.00 0.00 0.00 4.20
142 143 4.401925 CATGGAAATGAATACCCTCCCTC 58.598 47.826 0.00 0.00 0.00 4.30
143 144 2.438021 TGGAAATGAATACCCTCCCTCG 59.562 50.000 0.00 0.00 0.00 4.63
144 145 2.438392 GGAAATGAATACCCTCCCTCGT 59.562 50.000 0.00 0.00 0.00 4.18
145 146 3.118000 GGAAATGAATACCCTCCCTCGTT 60.118 47.826 0.00 0.00 0.00 3.85
146 147 4.102054 GGAAATGAATACCCTCCCTCGTTA 59.898 45.833 0.00 0.00 0.00 3.18
147 148 5.397109 GGAAATGAATACCCTCCCTCGTTAA 60.397 44.000 0.00 0.00 0.00 2.01
148 149 5.703730 AATGAATACCCTCCCTCGTTAAA 57.296 39.130 0.00 0.00 0.00 1.52
149 150 4.476628 TGAATACCCTCCCTCGTTAAAC 57.523 45.455 0.00 0.00 0.00 2.01
150 151 3.839490 TGAATACCCTCCCTCGTTAAACA 59.161 43.478 0.00 0.00 0.00 2.83
151 152 4.286549 TGAATACCCTCCCTCGTTAAACAA 59.713 41.667 0.00 0.00 0.00 2.83
152 153 4.914177 ATACCCTCCCTCGTTAAACAAA 57.086 40.909 0.00 0.00 0.00 2.83
153 154 3.801307 ACCCTCCCTCGTTAAACAAAT 57.199 42.857 0.00 0.00 0.00 2.32
154 155 4.914177 ACCCTCCCTCGTTAAACAAATA 57.086 40.909 0.00 0.00 0.00 1.40
155 156 5.245584 ACCCTCCCTCGTTAAACAAATAA 57.754 39.130 0.00 0.00 0.00 1.40
156 157 5.005740 ACCCTCCCTCGTTAAACAAATAAC 58.994 41.667 0.00 0.00 33.40 1.89
157 158 4.397103 CCCTCCCTCGTTAAACAAATAACC 59.603 45.833 0.00 0.00 33.19 2.85
158 159 5.005094 CCTCCCTCGTTAAACAAATAACCA 58.995 41.667 0.00 0.00 33.19 3.67
159 160 5.650703 CCTCCCTCGTTAAACAAATAACCAT 59.349 40.000 0.00 0.00 33.19 3.55
160 161 6.824704 CCTCCCTCGTTAAACAAATAACCATA 59.175 38.462 0.00 0.00 33.19 2.74
161 162 7.012044 CCTCCCTCGTTAAACAAATAACCATAG 59.988 40.741 0.00 0.00 33.19 2.23
162 163 6.824704 TCCCTCGTTAAACAAATAACCATAGG 59.175 38.462 0.00 0.00 33.19 2.57
163 164 6.824704 CCCTCGTTAAACAAATAACCATAGGA 59.175 38.462 0.00 0.00 33.12 2.94
164 165 7.337436 CCCTCGTTAAACAAATAACCATAGGAA 59.663 37.037 0.00 0.00 33.12 3.36
165 166 8.179615 CCTCGTTAAACAAATAACCATAGGAAC 58.820 37.037 0.00 0.00 33.12 3.62
166 167 7.741198 TCGTTAAACAAATAACCATAGGAACG 58.259 34.615 0.00 0.00 36.90 3.95
167 168 7.601886 TCGTTAAACAAATAACCATAGGAACGA 59.398 33.333 0.00 0.00 40.76 3.85
168 169 8.229137 CGTTAAACAAATAACCATAGGAACGAA 58.771 33.333 0.00 0.00 37.54 3.85
169 170 9.896263 GTTAAACAAATAACCATAGGAACGAAA 57.104 29.630 0.00 0.00 31.06 3.46
171 172 8.806177 AAACAAATAACCATAGGAACGAAAAC 57.194 30.769 0.00 0.00 0.00 2.43
172 173 6.916440 ACAAATAACCATAGGAACGAAAACC 58.084 36.000 0.00 0.00 0.00 3.27
173 174 6.490721 ACAAATAACCATAGGAACGAAAACCA 59.509 34.615 0.00 0.00 0.00 3.67
174 175 7.177744 ACAAATAACCATAGGAACGAAAACCAT 59.822 33.333 0.00 0.00 0.00 3.55
175 176 6.693315 ATAACCATAGGAACGAAAACCATG 57.307 37.500 0.00 0.00 0.00 3.66
176 177 2.752903 ACCATAGGAACGAAAACCATGC 59.247 45.455 0.00 0.00 0.00 4.06
177 178 2.099098 CCATAGGAACGAAAACCATGCC 59.901 50.000 0.00 0.00 0.00 4.40
178 179 1.828979 TAGGAACGAAAACCATGCCC 58.171 50.000 0.00 0.00 0.00 5.36
179 180 0.898326 AGGAACGAAAACCATGCCCC 60.898 55.000 0.00 0.00 0.00 5.80
180 181 1.182385 GGAACGAAAACCATGCCCCA 61.182 55.000 0.00 0.00 0.00 4.96
181 182 0.894835 GAACGAAAACCATGCCCCAT 59.105 50.000 0.00 0.00 0.00 4.00
182 183 1.275010 GAACGAAAACCATGCCCCATT 59.725 47.619 0.00 0.00 0.00 3.16
183 184 2.223803 ACGAAAACCATGCCCCATTA 57.776 45.000 0.00 0.00 0.00 1.90
184 185 2.745968 ACGAAAACCATGCCCCATTAT 58.254 42.857 0.00 0.00 0.00 1.28
185 186 2.693074 ACGAAAACCATGCCCCATTATC 59.307 45.455 0.00 0.00 0.00 1.75
186 187 2.035832 CGAAAACCATGCCCCATTATCC 59.964 50.000 0.00 0.00 0.00 2.59
187 188 1.703411 AAACCATGCCCCATTATCCG 58.297 50.000 0.00 0.00 0.00 4.18
188 189 0.827507 AACCATGCCCCATTATCCGC 60.828 55.000 0.00 0.00 0.00 5.54
189 190 1.228521 CCATGCCCCATTATCCGCA 60.229 57.895 0.00 0.00 35.35 5.69
190 191 0.827089 CCATGCCCCATTATCCGCAA 60.827 55.000 0.00 0.00 34.38 4.85
191 192 1.039068 CATGCCCCATTATCCGCAAA 58.961 50.000 0.00 0.00 34.38 3.68
192 193 1.411977 CATGCCCCATTATCCGCAAAA 59.588 47.619 0.00 0.00 34.38 2.44
193 194 1.561643 TGCCCCATTATCCGCAAAAA 58.438 45.000 0.00 0.00 0.00 1.94
218 219 8.735692 AAAACATAAAATCTTGCCCCATTATG 57.264 30.769 0.00 0.00 36.99 1.90
219 220 5.857268 ACATAAAATCTTGCCCCATTATGC 58.143 37.500 0.00 0.00 35.29 3.14
220 221 5.366186 ACATAAAATCTTGCCCCATTATGCA 59.634 36.000 0.00 0.00 35.29 3.96
221 222 4.840716 AAAATCTTGCCCCATTATGCAA 57.159 36.364 0.00 0.00 44.64 4.08
222 223 3.825143 AATCTTGCCCCATTATGCAAC 57.175 42.857 0.00 0.00 42.19 4.17
223 224 2.228545 TCTTGCCCCATTATGCAACA 57.771 45.000 0.00 0.00 42.19 3.33
224 225 2.533916 TCTTGCCCCATTATGCAACAA 58.466 42.857 0.00 0.00 42.19 2.83
225 226 2.233431 TCTTGCCCCATTATGCAACAAC 59.767 45.455 0.00 0.00 42.19 3.32
226 227 1.935799 TGCCCCATTATGCAACAACT 58.064 45.000 0.00 0.00 33.87 3.16
227 228 2.255406 TGCCCCATTATGCAACAACTT 58.745 42.857 0.00 0.00 33.87 2.66
228 229 2.028294 TGCCCCATTATGCAACAACTTG 60.028 45.455 0.00 0.00 33.87 3.16
229 230 2.677613 GCCCCATTATGCAACAACTTGG 60.678 50.000 0.00 0.00 0.00 3.61
230 231 2.566724 CCCCATTATGCAACAACTTGGT 59.433 45.455 0.00 0.00 0.00 3.67
231 232 3.766591 CCCCATTATGCAACAACTTGGTA 59.233 43.478 0.00 0.00 0.00 3.25
232 233 4.142182 CCCCATTATGCAACAACTTGGTAG 60.142 45.833 0.00 0.00 0.00 3.18
233 234 4.423732 CCATTATGCAACAACTTGGTAGC 58.576 43.478 0.00 0.00 0.00 3.58
234 235 4.082300 CCATTATGCAACAACTTGGTAGCA 60.082 41.667 0.00 6.45 36.34 3.49
235 236 5.394443 CCATTATGCAACAACTTGGTAGCAT 60.394 40.000 16.12 16.12 44.09 3.79
236 237 3.581024 ATGCAACAACTTGGTAGCATG 57.419 42.857 12.93 6.28 40.77 4.06
237 238 2.305928 TGCAACAACTTGGTAGCATGT 58.694 42.857 7.58 7.58 0.00 3.21
238 239 2.293122 TGCAACAACTTGGTAGCATGTC 59.707 45.455 13.16 2.56 0.00 3.06
239 240 2.351738 GCAACAACTTGGTAGCATGTCC 60.352 50.000 13.16 0.00 0.00 4.02
240 241 2.200373 ACAACTTGGTAGCATGTCCC 57.800 50.000 13.16 0.00 0.00 4.46
241 242 1.705186 ACAACTTGGTAGCATGTCCCT 59.295 47.619 13.16 0.00 0.00 4.20
242 243 2.086869 CAACTTGGTAGCATGTCCCTG 58.913 52.381 13.16 5.53 0.00 4.45
243 244 0.620556 ACTTGGTAGCATGTCCCTGG 59.379 55.000 7.58 0.00 0.00 4.45
244 245 0.911769 CTTGGTAGCATGTCCCTGGA 59.088 55.000 0.00 0.00 0.00 3.86
245 246 1.281867 CTTGGTAGCATGTCCCTGGAA 59.718 52.381 0.00 0.00 0.00 3.53
246 247 1.595311 TGGTAGCATGTCCCTGGAAT 58.405 50.000 0.00 0.00 0.00 3.01
247 248 1.490490 TGGTAGCATGTCCCTGGAATC 59.510 52.381 0.00 0.00 0.00 2.52
248 249 1.771255 GGTAGCATGTCCCTGGAATCT 59.229 52.381 0.00 0.00 0.00 2.40
249 250 2.224402 GGTAGCATGTCCCTGGAATCTC 60.224 54.545 0.00 0.00 0.00 2.75
250 251 1.588239 AGCATGTCCCTGGAATCTCA 58.412 50.000 0.00 0.00 0.00 3.27
251 252 1.211457 AGCATGTCCCTGGAATCTCAC 59.789 52.381 0.00 0.00 0.00 3.51
252 253 1.065199 GCATGTCCCTGGAATCTCACA 60.065 52.381 0.00 0.00 0.00 3.58
253 254 2.422519 GCATGTCCCTGGAATCTCACAT 60.423 50.000 0.00 0.00 0.00 3.21
254 255 3.211865 CATGTCCCTGGAATCTCACATG 58.788 50.000 0.00 0.00 36.28 3.21
255 256 2.269023 TGTCCCTGGAATCTCACATGT 58.731 47.619 0.00 0.00 0.00 3.21
256 257 2.237143 TGTCCCTGGAATCTCACATGTC 59.763 50.000 0.00 0.00 0.00 3.06
257 258 2.503356 GTCCCTGGAATCTCACATGTCT 59.497 50.000 0.00 0.00 0.00 3.41
258 259 2.768527 TCCCTGGAATCTCACATGTCTC 59.231 50.000 0.00 0.00 0.00 3.36
259 260 2.158842 CCCTGGAATCTCACATGTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
260 261 2.502947 CCTGGAATCTCACATGTCTCCA 59.497 50.000 0.00 2.85 0.00 3.86
261 262 3.529533 CTGGAATCTCACATGTCTCCAC 58.470 50.000 0.00 0.00 0.00 4.02
262 263 3.176411 TGGAATCTCACATGTCTCCACT 58.824 45.455 0.00 0.00 0.00 4.00
263 264 3.196469 TGGAATCTCACATGTCTCCACTC 59.804 47.826 0.00 0.00 0.00 3.51
264 265 3.431486 GGAATCTCACATGTCTCCACTCC 60.431 52.174 0.00 0.00 0.00 3.85
265 266 2.309136 TCTCACATGTCTCCACTCCA 57.691 50.000 0.00 0.00 0.00 3.86
266 267 2.608623 TCTCACATGTCTCCACTCCAA 58.391 47.619 0.00 0.00 0.00 3.53
267 268 2.972021 TCTCACATGTCTCCACTCCAAA 59.028 45.455 0.00 0.00 0.00 3.28
268 269 3.390967 TCTCACATGTCTCCACTCCAAAA 59.609 43.478 0.00 0.00 0.00 2.44
269 270 3.476552 TCACATGTCTCCACTCCAAAAC 58.523 45.455 0.00 0.00 0.00 2.43
270 271 3.136443 TCACATGTCTCCACTCCAAAACT 59.864 43.478 0.00 0.00 0.00 2.66
271 272 4.346709 TCACATGTCTCCACTCCAAAACTA 59.653 41.667 0.00 0.00 0.00 2.24
272 273 5.013079 TCACATGTCTCCACTCCAAAACTAT 59.987 40.000 0.00 0.00 0.00 2.12
273 274 5.122869 CACATGTCTCCACTCCAAAACTATG 59.877 44.000 0.00 0.00 0.00 2.23
274 275 5.013079 ACATGTCTCCACTCCAAAACTATGA 59.987 40.000 0.00 0.00 0.00 2.15
275 276 5.152623 TGTCTCCACTCCAAAACTATGAG 57.847 43.478 0.00 0.00 0.00 2.90
276 277 4.593206 TGTCTCCACTCCAAAACTATGAGT 59.407 41.667 0.00 0.00 39.86 3.41
277 278 5.172205 GTCTCCACTCCAAAACTATGAGTC 58.828 45.833 0.00 0.00 37.25 3.36
278 279 4.223032 TCTCCACTCCAAAACTATGAGTCC 59.777 45.833 0.00 0.00 37.25 3.85
279 280 3.907474 TCCACTCCAAAACTATGAGTCCA 59.093 43.478 0.00 0.00 37.25 4.02
280 281 4.536090 TCCACTCCAAAACTATGAGTCCAT 59.464 41.667 0.00 0.00 37.25 3.41
281 282 4.637534 CCACTCCAAAACTATGAGTCCATG 59.362 45.833 0.00 0.00 37.25 3.66
282 283 4.095483 CACTCCAAAACTATGAGTCCATGC 59.905 45.833 0.00 0.00 37.25 4.06
283 284 4.018960 ACTCCAAAACTATGAGTCCATGCT 60.019 41.667 0.00 0.00 34.33 3.79
284 285 5.189736 ACTCCAAAACTATGAGTCCATGCTA 59.810 40.000 0.00 0.00 34.33 3.49
285 286 5.428253 TCCAAAACTATGAGTCCATGCTAC 58.572 41.667 0.00 0.00 34.31 3.58
286 287 4.271049 CCAAAACTATGAGTCCATGCTACG 59.729 45.833 0.00 0.00 34.31 3.51
287 288 4.737855 AAACTATGAGTCCATGCTACGT 57.262 40.909 0.00 0.00 34.31 3.57
288 289 5.847111 AAACTATGAGTCCATGCTACGTA 57.153 39.130 0.00 0.00 34.31 3.57
289 290 4.832590 ACTATGAGTCCATGCTACGTAC 57.167 45.455 0.00 0.00 34.31 3.67
290 291 4.462133 ACTATGAGTCCATGCTACGTACT 58.538 43.478 0.00 0.00 34.31 2.73
291 292 3.717400 ATGAGTCCATGCTACGTACTG 57.283 47.619 0.00 0.00 0.00 2.74
292 293 1.134367 TGAGTCCATGCTACGTACTGC 59.866 52.381 0.00 0.00 0.00 4.40
293 294 1.405821 GAGTCCATGCTACGTACTGCT 59.594 52.381 8.13 0.00 0.00 4.24
294 295 1.135139 AGTCCATGCTACGTACTGCTG 59.865 52.381 8.13 4.53 0.00 4.41
295 296 0.179111 TCCATGCTACGTACTGCTGC 60.179 55.000 8.13 2.96 0.00 5.25
296 297 0.460109 CCATGCTACGTACTGCTGCA 60.460 55.000 8.64 8.64 38.05 4.41
297 298 0.647410 CATGCTACGTACTGCTGCAC 59.353 55.000 8.42 0.00 36.44 4.57
298 299 0.246360 ATGCTACGTACTGCTGCACA 59.754 50.000 8.42 0.00 36.44 4.57
306 307 4.785767 CTGCTGCACAGTTCCAGA 57.214 55.556 0.00 0.00 41.86 3.86
307 308 2.242113 CTGCTGCACAGTTCCAGAC 58.758 57.895 0.00 0.00 41.86 3.51
308 309 0.533531 CTGCTGCACAGTTCCAGACA 60.534 55.000 0.00 0.66 41.86 3.41
309 310 0.109153 TGCTGCACAGTTCCAGACAT 59.891 50.000 0.00 0.00 0.00 3.06
310 311 1.347378 TGCTGCACAGTTCCAGACATA 59.653 47.619 0.00 0.00 0.00 2.29
311 312 2.224499 TGCTGCACAGTTCCAGACATAA 60.224 45.455 0.00 0.00 0.00 1.90
312 313 2.813754 GCTGCACAGTTCCAGACATAAA 59.186 45.455 0.00 0.00 0.00 1.40
313 314 3.441572 GCTGCACAGTTCCAGACATAAAT 59.558 43.478 0.00 0.00 0.00 1.40
314 315 4.082571 GCTGCACAGTTCCAGACATAAATT 60.083 41.667 0.00 0.00 0.00 1.82
315 316 5.627499 TGCACAGTTCCAGACATAAATTC 57.373 39.130 0.00 0.00 0.00 2.17
316 317 4.458989 TGCACAGTTCCAGACATAAATTCC 59.541 41.667 0.00 0.00 0.00 3.01
317 318 4.458989 GCACAGTTCCAGACATAAATTCCA 59.541 41.667 0.00 0.00 0.00 3.53
318 319 5.619981 GCACAGTTCCAGACATAAATTCCAC 60.620 44.000 0.00 0.00 0.00 4.02
319 320 5.010282 ACAGTTCCAGACATAAATTCCACC 58.990 41.667 0.00 0.00 0.00 4.61
320 321 5.009631 CAGTTCCAGACATAAATTCCACCA 58.990 41.667 0.00 0.00 0.00 4.17
321 322 5.653769 CAGTTCCAGACATAAATTCCACCAT 59.346 40.000 0.00 0.00 0.00 3.55
322 323 6.828273 CAGTTCCAGACATAAATTCCACCATA 59.172 38.462 0.00 0.00 0.00 2.74
323 324 7.339212 CAGTTCCAGACATAAATTCCACCATAA 59.661 37.037 0.00 0.00 0.00 1.90
324 325 7.893302 AGTTCCAGACATAAATTCCACCATAAA 59.107 33.333 0.00 0.00 0.00 1.40
325 326 7.880160 TCCAGACATAAATTCCACCATAAAG 57.120 36.000 0.00 0.00 0.00 1.85
927 933 6.035005 GCCATTATAGCTCACATACACATACG 59.965 42.308 0.00 0.00 0.00 3.06
1043 1067 4.514577 CCGTCCTGCTGGTAGGCG 62.515 72.222 9.73 9.85 37.76 5.52
1160 1202 2.520741 CGAGGAGGGAGGAGGAGC 60.521 72.222 0.00 0.00 0.00 4.70
1192 1246 2.501610 GATGTCGACAGGAGGGGC 59.498 66.667 24.41 3.41 0.00 5.80
1350 1415 1.790090 TTTGTTTCTGCATGCCGCGA 61.790 50.000 16.68 6.28 46.97 5.87
1365 1430 3.034878 CGAGATGAGATCGCCGGT 58.965 61.111 1.90 0.00 32.81 5.28
1367 1432 1.786049 CGAGATGAGATCGCCGGTGA 61.786 60.000 22.04 22.04 32.81 4.02
1373 1438 1.140816 GAGATCGCCGGTGAAATAGC 58.859 55.000 23.72 9.22 0.00 2.97
1377 1442 0.818938 TCGCCGGTGAAATAGCAGTA 59.181 50.000 17.09 0.00 0.00 2.74
1387 1452 2.873133 AATAGCAGTACTGAGACGGC 57.127 50.000 27.08 9.80 40.37 5.68
1403 1468 1.883084 GGCGCGATCCGATCTGTTT 60.883 57.895 12.10 0.00 40.02 2.83
1405 1470 1.822250 GCGCGATCCGATCTGTTTCC 61.822 60.000 12.10 0.00 40.02 3.13
1406 1471 1.215655 CGCGATCCGATCTGTTTCCC 61.216 60.000 0.00 0.00 40.02 3.97
1512 1595 2.445654 GGAGGAGGAGCAGGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
1777 1860 1.271379 AGCATGCACATCAAACACAGG 59.729 47.619 21.98 0.00 0.00 4.00
2475 2596 8.623030 TGTAAATACGCCCACCTTAATATTTTC 58.377 33.333 0.00 0.00 0.00 2.29
2549 2674 0.039618 GAAATGAGAACCCCAGCCCA 59.960 55.000 0.00 0.00 0.00 5.36
2551 2676 0.251787 AATGAGAACCCCAGCCCAAC 60.252 55.000 0.00 0.00 0.00 3.77
2592 2717 2.901051 ATTTGCTACTCCGACGGCCG 62.901 60.000 26.86 26.86 38.18 6.13
2600 2725 4.514577 CCGACGGCCGAGATGCTT 62.515 66.667 35.90 7.12 41.76 3.91
2601 2726 2.411701 CGACGGCCGAGATGCTTA 59.588 61.111 35.90 0.00 41.76 3.09
2602 2727 1.007271 CGACGGCCGAGATGCTTAT 60.007 57.895 35.90 5.18 41.76 1.73
2613 2738 6.405397 GGCCGAGATGCTTATTAAAGGAAAAA 60.405 38.462 0.00 0.00 36.56 1.94
2622 2747 9.282569 TGCTTATTAAAGGAAAAATGTTGCATT 57.717 25.926 0.00 0.00 32.98 3.56
2632 2757 6.305638 GGAAAAATGTTGCATTAGAGTTCGTC 59.694 38.462 0.00 0.00 0.00 4.20
2633 2758 6.560253 AAAATGTTGCATTAGAGTTCGTCT 57.440 33.333 0.00 0.00 39.59 4.18
2662 2787 4.621068 TGATCAATCTCCGTGCATTTTC 57.379 40.909 0.00 0.00 0.00 2.29
2663 2788 3.378112 TGATCAATCTCCGTGCATTTTCC 59.622 43.478 0.00 0.00 0.00 3.13
2664 2789 2.091541 TCAATCTCCGTGCATTTTCCC 58.908 47.619 0.00 0.00 0.00 3.97
2665 2790 1.818060 CAATCTCCGTGCATTTTCCCA 59.182 47.619 0.00 0.00 0.00 4.37
2666 2791 2.428171 CAATCTCCGTGCATTTTCCCAT 59.572 45.455 0.00 0.00 0.00 4.00
2667 2792 2.214376 TCTCCGTGCATTTTCCCATT 57.786 45.000 0.00 0.00 0.00 3.16
2668 2793 2.524306 TCTCCGTGCATTTTCCCATTT 58.476 42.857 0.00 0.00 0.00 2.32
2669 2794 2.896685 TCTCCGTGCATTTTCCCATTTT 59.103 40.909 0.00 0.00 0.00 1.82
2670 2795 4.082845 TCTCCGTGCATTTTCCCATTTTA 58.917 39.130 0.00 0.00 0.00 1.52
2671 2796 4.709397 TCTCCGTGCATTTTCCCATTTTAT 59.291 37.500 0.00 0.00 0.00 1.40
2672 2797 5.186797 TCTCCGTGCATTTTCCCATTTTATT 59.813 36.000 0.00 0.00 0.00 1.40
2685 2822 6.926313 TCCCATTTTATTACCGTTTTTGAGG 58.074 36.000 0.00 0.00 0.00 3.86
2890 3271 0.736325 GCCGAGAGCGTGTGTGTATT 60.736 55.000 0.00 0.00 35.23 1.89
2905 3286 1.206132 TGTATTGACGCCCACTACTGG 59.794 52.381 7.20 0.00 33.54 4.00
2906 3287 0.177141 TATTGACGCCCACTACTGGC 59.823 55.000 0.00 0.00 45.70 4.85
2912 3293 2.045926 CCCACTACTGGCACTGGC 60.046 66.667 0.00 0.00 36.00 4.85
2952 3337 5.172205 GCTCTTTACTGGTAGAGTGAAAGG 58.828 45.833 0.00 0.00 40.01 3.11
3022 3419 3.679980 GTGTGTGTGCTCAACCATACTAG 59.320 47.826 0.00 0.00 0.00 2.57
3028 3425 6.605995 TGTGTGCTCAACCATACTAGTACTAT 59.394 38.462 4.31 0.00 0.00 2.12
3029 3426 7.776500 TGTGTGCTCAACCATACTAGTACTATA 59.224 37.037 4.31 0.00 0.00 1.31
3030 3427 8.074972 GTGTGCTCAACCATACTAGTACTATAC 58.925 40.741 4.31 0.00 0.00 1.47
3031 3428 7.997223 TGTGCTCAACCATACTAGTACTATACT 59.003 37.037 4.31 0.00 42.68 2.12
3032 3429 9.499479 GTGCTCAACCATACTAGTACTATACTA 57.501 37.037 4.31 0.00 40.14 1.82
3033 3430 9.499479 TGCTCAACCATACTAGTACTATACTAC 57.501 37.037 4.31 0.00 40.14 2.73
3034 3431 9.723601 GCTCAACCATACTAGTACTATACTACT 57.276 37.037 4.31 0.00 40.14 2.57
3047 3444 9.743057 AGTACTATACTACTAGTGTGAACTACG 57.257 37.037 5.39 0.00 37.23 3.51
3050 3447 8.474025 ACTATACTACTAGTGTGAACTACGACT 58.526 37.037 5.39 0.00 30.77 4.18
3051 3448 7.769272 ATACTACTAGTGTGAACTACGACTC 57.231 40.000 5.39 0.00 0.00 3.36
3052 3449 5.792741 ACTACTAGTGTGAACTACGACTCT 58.207 41.667 5.39 0.00 0.00 3.24
3053 3450 5.638657 ACTACTAGTGTGAACTACGACTCTG 59.361 44.000 5.39 0.00 0.00 3.35
3054 3451 3.752222 ACTAGTGTGAACTACGACTCTGG 59.248 47.826 0.00 0.00 0.00 3.86
3055 3452 2.584236 AGTGTGAACTACGACTCTGGT 58.416 47.619 0.00 0.00 0.00 4.00
3056 3453 3.748083 AGTGTGAACTACGACTCTGGTA 58.252 45.455 0.00 0.00 0.00 3.25
3057 3454 3.752222 AGTGTGAACTACGACTCTGGTAG 59.248 47.826 0.00 0.00 42.38 3.18
3093 3490 7.471657 TTGCAGCATTGAAGCAAAATATATG 57.528 32.000 12.03 0.00 44.39 1.78
3094 3491 5.464057 TGCAGCATTGAAGCAAAATATATGC 59.536 36.000 0.00 5.49 44.15 3.14
3105 3502 4.738541 GCAAAATATATGCTGCCAAGTGCT 60.739 41.667 7.70 0.00 40.64 4.40
3106 3503 5.507817 GCAAAATATATGCTGCCAAGTGCTA 60.508 40.000 7.70 0.00 40.64 3.49
3107 3504 6.684686 CAAAATATATGCTGCCAAGTGCTAT 58.315 36.000 0.00 0.00 42.00 2.97
3109 3506 6.992063 AATATATGCTGCCAAGTGCTATAC 57.008 37.500 0.00 0.00 42.00 1.47
3110 3507 4.630644 ATATGCTGCCAAGTGCTATACT 57.369 40.909 0.00 0.00 42.89 2.12
3143 3553 4.740268 TGGTGTAGTAGCGTATGAACAAG 58.260 43.478 0.00 0.00 0.00 3.16
3152 3566 2.665519 GCGTATGAACAAGGCAACAGTG 60.666 50.000 0.00 0.00 41.41 3.66
3164 3578 1.060713 CAACAGTGCTTACGACGGAG 58.939 55.000 0.00 0.00 0.00 4.63
3169 3583 1.089920 GTGCTTACGACGGAGGAGTA 58.910 55.000 0.00 0.00 0.00 2.59
3170 3584 1.674962 GTGCTTACGACGGAGGAGTAT 59.325 52.381 0.00 0.00 0.00 2.12
3171 3585 1.945394 TGCTTACGACGGAGGAGTATC 59.055 52.381 0.00 0.00 0.00 2.24
3172 3586 2.220313 GCTTACGACGGAGGAGTATCT 58.780 52.381 0.00 0.00 33.73 1.98
3182 3599 3.570125 CGGAGGAGTATCTGTATCAAGCA 59.430 47.826 0.00 0.00 33.73 3.91
3369 3800 4.043310 CCCACCCCATCATCAAGTATACAT 59.957 45.833 5.50 0.00 0.00 2.29
3370 3801 5.250543 CCCACCCCATCATCAAGTATACATA 59.749 44.000 5.50 0.00 0.00 2.29
3371 3802 6.173339 CCACCCCATCATCAAGTATACATAC 58.827 44.000 5.50 0.00 0.00 2.39
3397 3828 4.375272 GCATTTTCGATCTCATCTCCTCA 58.625 43.478 0.00 0.00 0.00 3.86
3465 3909 0.464373 AGGCGACCGATGAATGCAAT 60.464 50.000 0.00 0.00 0.00 3.56
3469 3913 1.202166 CGACCGATGAATGCAATGCAA 60.202 47.619 13.45 0.00 43.62 4.08
3503 3947 2.068519 TCAATGTCATGACTCGTGCAC 58.931 47.619 25.55 6.82 0.00 4.57
3510 3954 2.881352 GACTCGTGCACGGCTAGC 60.881 66.667 36.41 18.88 40.29 3.42
3529 3974 0.522705 CAGCGCAGTGAATCATGCAC 60.523 55.000 11.47 0.00 42.68 4.57
3560 4005 3.004862 GCCCTATCTAGACTAGACGAGC 58.995 54.545 14.47 11.14 37.69 5.03
3601 4046 1.147817 AGCCAAGTCTGACCCCAAAAT 59.852 47.619 3.76 0.00 0.00 1.82
3602 4047 1.546029 GCCAAGTCTGACCCCAAAATC 59.454 52.381 3.76 0.00 0.00 2.17
3603 4048 2.819348 GCCAAGTCTGACCCCAAAATCT 60.819 50.000 3.76 0.00 0.00 2.40
3606 4051 4.021981 CCAAGTCTGACCCCAAAATCTTTC 60.022 45.833 3.76 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.682292 TGGAGCCGTGTGTGTTCATA 59.318 50.000 0.00 0.00 0.00 2.15
1 2 0.603707 CTGGAGCCGTGTGTGTTCAT 60.604 55.000 0.00 0.00 0.00 2.57
2 3 1.227527 CTGGAGCCGTGTGTGTTCA 60.228 57.895 0.00 0.00 0.00 3.18
3 4 1.222115 GACTGGAGCCGTGTGTGTTC 61.222 60.000 0.00 0.00 0.00 3.18
4 5 1.227556 GACTGGAGCCGTGTGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
5 6 2.421739 GACTGGAGCCGTGTGTGT 59.578 61.111 0.00 0.00 0.00 3.72
6 7 2.357517 GGACTGGAGCCGTGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
7 8 2.172483 GATGGACTGGAGCCGTGTGT 62.172 60.000 0.00 0.00 0.00 3.72
10 11 0.103208 GTAGATGGACTGGAGCCGTG 59.897 60.000 0.00 0.00 0.00 4.94
11 12 1.384989 CGTAGATGGACTGGAGCCGT 61.385 60.000 0.00 0.00 0.00 5.68
12 13 1.360551 CGTAGATGGACTGGAGCCG 59.639 63.158 0.00 0.00 0.00 5.52
13 14 1.337387 GTACGTAGATGGACTGGAGCC 59.663 57.143 0.00 0.00 0.00 4.70
14 15 2.033550 CAGTACGTAGATGGACTGGAGC 59.966 54.545 6.24 0.00 36.48 4.70
15 16 2.033550 GCAGTACGTAGATGGACTGGAG 59.966 54.545 14.59 0.00 39.76 3.86
16 17 2.022195 GCAGTACGTAGATGGACTGGA 58.978 52.381 14.59 0.00 39.76 3.86
17 18 1.749063 TGCAGTACGTAGATGGACTGG 59.251 52.381 14.59 0.00 39.76 4.00
18 19 2.163613 TGTGCAGTACGTAGATGGACTG 59.836 50.000 23.76 17.55 41.82 3.51
19 20 2.443416 TGTGCAGTACGTAGATGGACT 58.557 47.619 23.76 7.15 36.38 3.85
20 21 2.933495 TGTGCAGTACGTAGATGGAC 57.067 50.000 19.45 19.45 36.01 4.02
21 22 3.445805 TGAATGTGCAGTACGTAGATGGA 59.554 43.478 0.00 0.00 0.00 3.41
22 23 3.780902 TGAATGTGCAGTACGTAGATGG 58.219 45.455 0.00 0.00 0.00 3.51
23 24 5.043248 TGATGAATGTGCAGTACGTAGATG 58.957 41.667 0.00 0.00 0.00 2.90
24 25 5.262588 TGATGAATGTGCAGTACGTAGAT 57.737 39.130 0.00 0.00 0.00 1.98
25 26 4.712122 TGATGAATGTGCAGTACGTAGA 57.288 40.909 0.00 0.00 0.00 2.59
26 27 5.050769 GGAATGATGAATGTGCAGTACGTAG 60.051 44.000 0.00 0.00 0.00 3.51
27 28 4.808895 GGAATGATGAATGTGCAGTACGTA 59.191 41.667 0.00 0.00 0.00 3.57
28 29 3.623060 GGAATGATGAATGTGCAGTACGT 59.377 43.478 0.00 0.00 0.00 3.57
29 30 3.302675 CGGAATGATGAATGTGCAGTACG 60.303 47.826 0.00 0.00 0.00 3.67
30 31 3.546815 GCGGAATGATGAATGTGCAGTAC 60.547 47.826 0.00 0.00 0.00 2.73
31 32 2.613595 GCGGAATGATGAATGTGCAGTA 59.386 45.455 0.00 0.00 0.00 2.74
32 33 1.402968 GCGGAATGATGAATGTGCAGT 59.597 47.619 0.00 0.00 0.00 4.40
33 34 1.268896 GGCGGAATGATGAATGTGCAG 60.269 52.381 0.00 0.00 0.00 4.41
34 35 0.740149 GGCGGAATGATGAATGTGCA 59.260 50.000 0.00 0.00 0.00 4.57
35 36 1.027357 AGGCGGAATGATGAATGTGC 58.973 50.000 0.00 0.00 0.00 4.57
36 37 2.019249 ACAGGCGGAATGATGAATGTG 58.981 47.619 0.00 0.00 0.00 3.21
37 38 2.425143 ACAGGCGGAATGATGAATGT 57.575 45.000 0.00 0.00 0.00 2.71
38 39 3.441163 CAAACAGGCGGAATGATGAATG 58.559 45.455 0.00 0.00 0.00 2.67
39 40 2.428171 CCAAACAGGCGGAATGATGAAT 59.572 45.455 0.00 0.00 0.00 2.57
40 41 1.818060 CCAAACAGGCGGAATGATGAA 59.182 47.619 0.00 0.00 0.00 2.57
41 42 1.004161 TCCAAACAGGCGGAATGATGA 59.996 47.619 0.00 0.00 37.29 2.92
42 43 1.462616 TCCAAACAGGCGGAATGATG 58.537 50.000 0.00 0.00 37.29 3.07
43 44 2.214376 TTCCAAACAGGCGGAATGAT 57.786 45.000 0.00 0.00 36.36 2.45
44 45 1.988293 TTTCCAAACAGGCGGAATGA 58.012 45.000 0.00 0.00 40.89 2.57
45 46 2.810439 TTTTCCAAACAGGCGGAATG 57.190 45.000 0.00 0.00 40.89 2.67
46 47 4.956075 AGATATTTTCCAAACAGGCGGAAT 59.044 37.500 0.00 0.00 40.89 3.01
47 48 4.340617 AGATATTTTCCAAACAGGCGGAA 58.659 39.130 0.00 0.00 39.54 4.30
48 49 3.963129 AGATATTTTCCAAACAGGCGGA 58.037 40.909 0.00 0.00 37.29 5.54
49 50 4.718940 AAGATATTTTCCAAACAGGCGG 57.281 40.909 0.00 0.00 37.29 6.13
50 51 7.049140 GAAAAAGATATTTTCCAAACAGGCG 57.951 36.000 0.00 0.00 37.29 5.52
62 63 8.935844 GCGAAAAAGGAATGGAAAAAGATATTT 58.064 29.630 0.00 0.00 0.00 1.40
63 64 7.275560 CGCGAAAAAGGAATGGAAAAAGATATT 59.724 33.333 0.00 0.00 0.00 1.28
64 65 6.751888 CGCGAAAAAGGAATGGAAAAAGATAT 59.248 34.615 0.00 0.00 0.00 1.63
65 66 6.090129 CGCGAAAAAGGAATGGAAAAAGATA 58.910 36.000 0.00 0.00 0.00 1.98
66 67 4.923281 CGCGAAAAAGGAATGGAAAAAGAT 59.077 37.500 0.00 0.00 0.00 2.40
67 68 4.295051 CGCGAAAAAGGAATGGAAAAAGA 58.705 39.130 0.00 0.00 0.00 2.52
68 69 3.121025 GCGCGAAAAAGGAATGGAAAAAG 60.121 43.478 12.10 0.00 0.00 2.27
69 70 2.797719 GCGCGAAAAAGGAATGGAAAAA 59.202 40.909 12.10 0.00 0.00 1.94
70 71 2.399448 GCGCGAAAAAGGAATGGAAAA 58.601 42.857 12.10 0.00 0.00 2.29
71 72 1.336424 GGCGCGAAAAAGGAATGGAAA 60.336 47.619 12.10 0.00 0.00 3.13
72 73 0.242555 GGCGCGAAAAAGGAATGGAA 59.757 50.000 12.10 0.00 0.00 3.53
73 74 1.591504 GGGCGCGAAAAAGGAATGGA 61.592 55.000 12.10 0.00 0.00 3.41
74 75 1.153842 GGGCGCGAAAAAGGAATGG 60.154 57.895 12.10 0.00 0.00 3.16
75 76 0.173255 ATGGGCGCGAAAAAGGAATG 59.827 50.000 12.10 0.00 0.00 2.67
76 77 0.455815 GATGGGCGCGAAAAAGGAAT 59.544 50.000 12.10 0.00 0.00 3.01
77 78 0.891449 TGATGGGCGCGAAAAAGGAA 60.891 50.000 12.10 0.00 0.00 3.36
78 79 0.679640 ATGATGGGCGCGAAAAAGGA 60.680 50.000 12.10 0.00 0.00 3.36
79 80 0.173255 AATGATGGGCGCGAAAAAGG 59.827 50.000 12.10 0.00 0.00 3.11
80 81 1.133025 AGAATGATGGGCGCGAAAAAG 59.867 47.619 12.10 0.00 0.00 2.27
81 82 1.173043 AGAATGATGGGCGCGAAAAA 58.827 45.000 12.10 0.00 0.00 1.94
82 83 1.135431 CAAGAATGATGGGCGCGAAAA 60.135 47.619 12.10 0.00 0.00 2.29
83 84 0.451383 CAAGAATGATGGGCGCGAAA 59.549 50.000 12.10 0.00 0.00 3.46
84 85 1.992233 GCAAGAATGATGGGCGCGAA 61.992 55.000 12.10 0.00 0.00 4.70
85 86 2.472059 GCAAGAATGATGGGCGCGA 61.472 57.895 12.10 0.00 0.00 5.87
86 87 2.025156 GCAAGAATGATGGGCGCG 59.975 61.111 0.00 0.00 0.00 6.86
87 88 2.414594 GGCAAGAATGATGGGCGC 59.585 61.111 0.00 0.00 0.00 6.53
88 89 1.434696 GTGGCAAGAATGATGGGCG 59.565 57.895 0.00 0.00 0.00 6.13
89 90 1.818555 GGTGGCAAGAATGATGGGC 59.181 57.895 0.00 0.00 0.00 5.36
90 91 0.680921 ACGGTGGCAAGAATGATGGG 60.681 55.000 0.00 0.00 0.00 4.00
91 92 2.036958 TACGGTGGCAAGAATGATGG 57.963 50.000 0.00 0.00 0.00 3.51
92 93 3.002656 GTGATACGGTGGCAAGAATGATG 59.997 47.826 0.00 0.00 0.00 3.07
93 94 3.206150 GTGATACGGTGGCAAGAATGAT 58.794 45.455 0.00 0.00 0.00 2.45
94 95 2.027653 TGTGATACGGTGGCAAGAATGA 60.028 45.455 0.00 0.00 0.00 2.57
95 96 2.355197 TGTGATACGGTGGCAAGAATG 58.645 47.619 0.00 0.00 0.00 2.67
96 97 2.779755 TGTGATACGGTGGCAAGAAT 57.220 45.000 0.00 0.00 0.00 2.40
97 98 2.779755 ATGTGATACGGTGGCAAGAA 57.220 45.000 0.00 0.00 0.00 2.52
98 99 3.792401 CTTATGTGATACGGTGGCAAGA 58.208 45.455 0.00 0.00 0.00 3.02
99 100 2.287915 GCTTATGTGATACGGTGGCAAG 59.712 50.000 0.00 0.00 0.00 4.01
100 101 2.285083 GCTTATGTGATACGGTGGCAA 58.715 47.619 0.00 0.00 0.00 4.52
101 102 1.208293 TGCTTATGTGATACGGTGGCA 59.792 47.619 0.00 0.00 0.00 4.92
102 103 1.948104 TGCTTATGTGATACGGTGGC 58.052 50.000 0.00 0.00 0.00 5.01
103 104 2.807967 CCATGCTTATGTGATACGGTGG 59.192 50.000 0.00 0.00 0.00 4.61
104 105 3.727726 TCCATGCTTATGTGATACGGTG 58.272 45.455 0.00 0.00 0.00 4.94
105 106 4.415881 TTCCATGCTTATGTGATACGGT 57.584 40.909 0.00 0.00 0.00 4.83
106 107 5.469760 TCATTTCCATGCTTATGTGATACGG 59.530 40.000 0.00 0.00 0.00 4.02
107 108 6.544038 TCATTTCCATGCTTATGTGATACG 57.456 37.500 0.00 0.00 0.00 3.06
108 109 9.831737 GTATTCATTTCCATGCTTATGTGATAC 57.168 33.333 0.00 1.53 0.00 2.24
109 110 9.013229 GGTATTCATTTCCATGCTTATGTGATA 57.987 33.333 0.00 0.00 0.00 2.15
110 111 7.039504 GGGTATTCATTTCCATGCTTATGTGAT 60.040 37.037 0.00 0.00 0.00 3.06
111 112 6.265196 GGGTATTCATTTCCATGCTTATGTGA 59.735 38.462 0.00 0.00 0.00 3.58
112 113 6.266103 AGGGTATTCATTTCCATGCTTATGTG 59.734 38.462 0.00 0.00 0.00 3.21
113 114 6.376248 AGGGTATTCATTTCCATGCTTATGT 58.624 36.000 0.00 0.00 0.00 2.29
114 115 6.071728 GGAGGGTATTCATTTCCATGCTTATG 60.072 42.308 0.00 0.00 0.00 1.90
115 116 6.012745 GGAGGGTATTCATTTCCATGCTTAT 58.987 40.000 0.00 0.00 0.00 1.73
116 117 5.385198 GGAGGGTATTCATTTCCATGCTTA 58.615 41.667 0.00 0.00 0.00 3.09
117 118 4.218312 GGAGGGTATTCATTTCCATGCTT 58.782 43.478 0.00 0.00 0.00 3.91
118 119 3.437052 GGGAGGGTATTCATTTCCATGCT 60.437 47.826 0.00 0.00 0.00 3.79
119 120 2.893489 GGGAGGGTATTCATTTCCATGC 59.107 50.000 0.00 0.00 0.00 4.06
120 121 4.401925 GAGGGAGGGTATTCATTTCCATG 58.598 47.826 0.00 0.00 0.00 3.66
121 122 3.073062 CGAGGGAGGGTATTCATTTCCAT 59.927 47.826 0.00 0.00 0.00 3.41
122 123 2.438021 CGAGGGAGGGTATTCATTTCCA 59.562 50.000 0.00 0.00 0.00 3.53
123 124 2.438392 ACGAGGGAGGGTATTCATTTCC 59.562 50.000 0.00 0.00 0.00 3.13
124 125 3.840124 ACGAGGGAGGGTATTCATTTC 57.160 47.619 0.00 0.00 0.00 2.17
125 126 5.703730 TTAACGAGGGAGGGTATTCATTT 57.296 39.130 0.00 0.00 0.00 2.32
126 127 5.045432 TGTTTAACGAGGGAGGGTATTCATT 60.045 40.000 0.00 0.00 0.00 2.57
127 128 4.472108 TGTTTAACGAGGGAGGGTATTCAT 59.528 41.667 0.00 0.00 0.00 2.57
128 129 3.839490 TGTTTAACGAGGGAGGGTATTCA 59.161 43.478 0.00 0.00 0.00 2.57
129 130 4.476628 TGTTTAACGAGGGAGGGTATTC 57.523 45.455 0.00 0.00 0.00 1.75
130 131 4.914177 TTGTTTAACGAGGGAGGGTATT 57.086 40.909 0.00 0.00 0.00 1.89
131 132 4.914177 TTTGTTTAACGAGGGAGGGTAT 57.086 40.909 0.00 0.00 0.00 2.73
132 133 4.914177 ATTTGTTTAACGAGGGAGGGTA 57.086 40.909 0.00 0.00 0.00 3.69
133 134 3.801307 ATTTGTTTAACGAGGGAGGGT 57.199 42.857 0.00 0.00 0.00 4.34
134 135 4.397103 GGTTATTTGTTTAACGAGGGAGGG 59.603 45.833 0.00 0.00 33.71 4.30
135 136 5.005094 TGGTTATTTGTTTAACGAGGGAGG 58.995 41.667 0.00 0.00 33.71 4.30
136 137 6.753107 ATGGTTATTTGTTTAACGAGGGAG 57.247 37.500 0.00 0.00 33.71 4.30
137 138 6.824704 CCTATGGTTATTTGTTTAACGAGGGA 59.175 38.462 0.00 0.00 33.71 4.20
138 139 6.824704 TCCTATGGTTATTTGTTTAACGAGGG 59.175 38.462 0.00 0.00 33.71 4.30
139 140 7.852971 TCCTATGGTTATTTGTTTAACGAGG 57.147 36.000 0.00 0.00 33.71 4.63
140 141 7.901377 CGTTCCTATGGTTATTTGTTTAACGAG 59.099 37.037 0.00 0.00 37.57 4.18
141 142 7.601886 TCGTTCCTATGGTTATTTGTTTAACGA 59.398 33.333 0.00 0.00 40.74 3.85
142 143 7.741198 TCGTTCCTATGGTTATTTGTTTAACG 58.259 34.615 0.00 0.00 36.94 3.18
143 144 9.896263 TTTCGTTCCTATGGTTATTTGTTTAAC 57.104 29.630 0.00 0.00 0.00 2.01
145 146 9.896263 GTTTTCGTTCCTATGGTTATTTGTTTA 57.104 29.630 0.00 0.00 0.00 2.01
146 147 7.868922 GGTTTTCGTTCCTATGGTTATTTGTTT 59.131 33.333 0.00 0.00 0.00 2.83
147 148 7.014422 TGGTTTTCGTTCCTATGGTTATTTGTT 59.986 33.333 0.00 0.00 0.00 2.83
148 149 6.490721 TGGTTTTCGTTCCTATGGTTATTTGT 59.509 34.615 0.00 0.00 0.00 2.83
149 150 6.915349 TGGTTTTCGTTCCTATGGTTATTTG 58.085 36.000 0.00 0.00 0.00 2.32
150 151 7.543756 CATGGTTTTCGTTCCTATGGTTATTT 58.456 34.615 0.00 0.00 0.00 1.40
151 152 6.405397 GCATGGTTTTCGTTCCTATGGTTATT 60.405 38.462 0.00 0.00 0.00 1.40
152 153 5.067283 GCATGGTTTTCGTTCCTATGGTTAT 59.933 40.000 0.00 0.00 0.00 1.89
153 154 4.396790 GCATGGTTTTCGTTCCTATGGTTA 59.603 41.667 0.00 0.00 0.00 2.85
154 155 3.192633 GCATGGTTTTCGTTCCTATGGTT 59.807 43.478 0.00 0.00 0.00 3.67
155 156 2.752903 GCATGGTTTTCGTTCCTATGGT 59.247 45.455 0.00 0.00 0.00 3.55
156 157 2.099098 GGCATGGTTTTCGTTCCTATGG 59.901 50.000 0.00 0.00 0.00 2.74
157 158 2.099098 GGGCATGGTTTTCGTTCCTATG 59.901 50.000 0.00 0.00 0.00 2.23
158 159 2.375146 GGGCATGGTTTTCGTTCCTAT 58.625 47.619 0.00 0.00 0.00 2.57
159 160 1.614850 GGGGCATGGTTTTCGTTCCTA 60.615 52.381 0.00 0.00 0.00 2.94
160 161 0.898326 GGGGCATGGTTTTCGTTCCT 60.898 55.000 0.00 0.00 0.00 3.36
161 162 1.182385 TGGGGCATGGTTTTCGTTCC 61.182 55.000 0.00 0.00 0.00 3.62
162 163 0.894835 ATGGGGCATGGTTTTCGTTC 59.105 50.000 0.00 0.00 0.00 3.95
163 164 1.347062 AATGGGGCATGGTTTTCGTT 58.653 45.000 0.00 0.00 0.00 3.85
164 165 2.223803 TAATGGGGCATGGTTTTCGT 57.776 45.000 0.00 0.00 0.00 3.85
165 166 2.035832 GGATAATGGGGCATGGTTTTCG 59.964 50.000 0.00 0.00 0.00 3.46
166 167 2.035832 CGGATAATGGGGCATGGTTTTC 59.964 50.000 0.00 0.00 0.00 2.29
167 168 2.038659 CGGATAATGGGGCATGGTTTT 58.961 47.619 0.00 0.00 0.00 2.43
168 169 1.703411 CGGATAATGGGGCATGGTTT 58.297 50.000 0.00 0.00 0.00 3.27
169 170 0.827507 GCGGATAATGGGGCATGGTT 60.828 55.000 0.00 0.00 0.00 3.67
170 171 1.228552 GCGGATAATGGGGCATGGT 60.229 57.895 0.00 0.00 0.00 3.55
171 172 0.827089 TTGCGGATAATGGGGCATGG 60.827 55.000 0.00 0.00 35.03 3.66
172 173 1.039068 TTTGCGGATAATGGGGCATG 58.961 50.000 0.00 0.00 35.03 4.06
173 174 1.786937 TTTTGCGGATAATGGGGCAT 58.213 45.000 0.00 0.00 35.03 4.40
174 175 1.561643 TTTTTGCGGATAATGGGGCA 58.438 45.000 0.00 0.00 0.00 5.36
192 193 9.176460 CATAATGGGGCAAGATTTTATGTTTTT 57.824 29.630 0.00 0.00 0.00 1.94
193 194 7.282901 GCATAATGGGGCAAGATTTTATGTTTT 59.717 33.333 0.00 0.00 32.36 2.43
194 195 6.767423 GCATAATGGGGCAAGATTTTATGTTT 59.233 34.615 0.00 0.00 32.36 2.83
195 196 6.126825 TGCATAATGGGGCAAGATTTTATGTT 60.127 34.615 0.00 0.00 37.03 2.71
196 197 5.366186 TGCATAATGGGGCAAGATTTTATGT 59.634 36.000 0.00 0.00 37.03 2.29
197 198 5.856156 TGCATAATGGGGCAAGATTTTATG 58.144 37.500 0.00 0.00 37.03 1.90
198 199 6.497624 TTGCATAATGGGGCAAGATTTTAT 57.502 33.333 0.00 0.00 44.41 1.40
199 200 5.946942 TTGCATAATGGGGCAAGATTTTA 57.053 34.783 0.00 0.00 44.41 1.52
200 201 4.840716 TTGCATAATGGGGCAAGATTTT 57.159 36.364 0.00 0.00 44.41 1.82
206 207 2.255406 AGTTGTTGCATAATGGGGCAA 58.745 42.857 0.00 0.00 46.84 4.52
207 208 1.935799 AGTTGTTGCATAATGGGGCA 58.064 45.000 0.00 0.00 38.46 5.36
208 209 2.620242 CAAGTTGTTGCATAATGGGGC 58.380 47.619 0.00 0.00 0.00 5.80
209 210 2.566724 ACCAAGTTGTTGCATAATGGGG 59.433 45.455 1.45 0.00 31.64 4.96
210 211 3.959535 ACCAAGTTGTTGCATAATGGG 57.040 42.857 1.45 0.00 31.64 4.00
211 212 4.082300 TGCTACCAAGTTGTTGCATAATGG 60.082 41.667 1.45 0.00 41.00 3.16
212 213 5.058149 TGCTACCAAGTTGTTGCATAATG 57.942 39.130 1.45 0.00 41.00 1.90
218 219 2.351738 GGACATGCTACCAAGTTGTTGC 60.352 50.000 1.45 3.83 37.47 4.17
219 220 2.228822 GGGACATGCTACCAAGTTGTTG 59.771 50.000 1.45 0.00 0.00 3.33
220 221 2.108250 AGGGACATGCTACCAAGTTGTT 59.892 45.455 1.45 0.00 0.00 2.83
221 222 1.705186 AGGGACATGCTACCAAGTTGT 59.295 47.619 1.45 0.00 0.00 3.32
222 223 2.086869 CAGGGACATGCTACCAAGTTG 58.913 52.381 0.00 0.00 0.00 3.16
223 224 1.004745 CCAGGGACATGCTACCAAGTT 59.995 52.381 0.00 0.00 0.00 2.66
224 225 0.620556 CCAGGGACATGCTACCAAGT 59.379 55.000 0.00 0.00 0.00 3.16
225 226 0.911769 TCCAGGGACATGCTACCAAG 59.088 55.000 0.00 0.00 0.00 3.61
226 227 1.367346 TTCCAGGGACATGCTACCAA 58.633 50.000 0.00 0.00 0.00 3.67
227 228 1.490490 GATTCCAGGGACATGCTACCA 59.510 52.381 0.00 0.00 0.00 3.25
228 229 1.771255 AGATTCCAGGGACATGCTACC 59.229 52.381 0.00 0.00 0.00 3.18
229 230 2.435805 TGAGATTCCAGGGACATGCTAC 59.564 50.000 0.00 0.00 0.00 3.58
230 231 2.435805 GTGAGATTCCAGGGACATGCTA 59.564 50.000 0.00 0.00 0.00 3.49
231 232 1.211457 GTGAGATTCCAGGGACATGCT 59.789 52.381 0.00 0.00 0.00 3.79
232 233 1.065199 TGTGAGATTCCAGGGACATGC 60.065 52.381 0.00 0.00 0.00 4.06
233 234 3.211865 CATGTGAGATTCCAGGGACATG 58.788 50.000 0.00 0.00 35.98 3.21
234 235 2.848694 ACATGTGAGATTCCAGGGACAT 59.151 45.455 0.00 0.00 0.00 3.06
235 236 2.237143 GACATGTGAGATTCCAGGGACA 59.763 50.000 1.15 0.00 0.00 4.02
236 237 2.503356 AGACATGTGAGATTCCAGGGAC 59.497 50.000 1.15 0.00 0.00 4.46
237 238 2.768527 GAGACATGTGAGATTCCAGGGA 59.231 50.000 1.15 0.00 0.00 4.20
238 239 2.158842 GGAGACATGTGAGATTCCAGGG 60.159 54.545 1.15 0.00 0.00 4.45
239 240 2.502947 TGGAGACATGTGAGATTCCAGG 59.497 50.000 1.15 0.00 33.40 4.45
240 241 3.197333 AGTGGAGACATGTGAGATTCCAG 59.803 47.826 1.15 0.00 46.14 3.86
241 242 3.176411 AGTGGAGACATGTGAGATTCCA 58.824 45.455 1.15 5.83 46.14 3.53
242 243 3.431486 GGAGTGGAGACATGTGAGATTCC 60.431 52.174 1.15 3.11 46.14 3.01
243 244 3.196469 TGGAGTGGAGACATGTGAGATTC 59.804 47.826 1.15 0.00 46.14 2.52
244 245 3.176411 TGGAGTGGAGACATGTGAGATT 58.824 45.455 1.15 0.00 46.14 2.40
245 246 2.825223 TGGAGTGGAGACATGTGAGAT 58.175 47.619 1.15 0.00 46.14 2.75
246 247 2.309136 TGGAGTGGAGACATGTGAGA 57.691 50.000 1.15 0.00 46.14 3.27
247 248 3.407424 TTTGGAGTGGAGACATGTGAG 57.593 47.619 1.15 0.00 46.14 3.51
248 249 3.136443 AGTTTTGGAGTGGAGACATGTGA 59.864 43.478 1.15 0.00 46.14 3.58
249 250 3.480470 AGTTTTGGAGTGGAGACATGTG 58.520 45.455 1.15 0.00 46.14 3.21
250 251 3.864789 AGTTTTGGAGTGGAGACATGT 57.135 42.857 0.00 0.00 46.14 3.21
251 252 5.491070 TCATAGTTTTGGAGTGGAGACATG 58.509 41.667 0.00 0.00 46.14 3.21
252 253 5.249393 ACTCATAGTTTTGGAGTGGAGACAT 59.751 40.000 0.00 0.00 46.14 3.06
253 254 4.593206 ACTCATAGTTTTGGAGTGGAGACA 59.407 41.667 0.00 0.00 40.21 3.41
254 255 5.153950 ACTCATAGTTTTGGAGTGGAGAC 57.846 43.478 0.00 0.00 40.21 3.36
255 256 4.223032 GGACTCATAGTTTTGGAGTGGAGA 59.777 45.833 0.00 0.00 41.68 3.71
256 257 4.020218 TGGACTCATAGTTTTGGAGTGGAG 60.020 45.833 0.00 0.00 41.68 3.86
257 258 3.907474 TGGACTCATAGTTTTGGAGTGGA 59.093 43.478 0.00 0.00 41.68 4.02
258 259 4.286297 TGGACTCATAGTTTTGGAGTGG 57.714 45.455 0.00 0.00 41.68 4.00
259 260 4.095483 GCATGGACTCATAGTTTTGGAGTG 59.905 45.833 0.00 0.00 41.68 3.51
260 261 4.018960 AGCATGGACTCATAGTTTTGGAGT 60.019 41.667 0.00 0.00 44.12 3.85
261 262 4.521146 AGCATGGACTCATAGTTTTGGAG 58.479 43.478 0.00 0.00 34.85 3.86
262 263 4.574674 AGCATGGACTCATAGTTTTGGA 57.425 40.909 0.00 0.00 31.33 3.53
263 264 4.271049 CGTAGCATGGACTCATAGTTTTGG 59.729 45.833 0.00 0.00 31.33 3.28
264 265 4.870426 ACGTAGCATGGACTCATAGTTTTG 59.130 41.667 0.00 0.00 31.33 2.44
265 266 5.086104 ACGTAGCATGGACTCATAGTTTT 57.914 39.130 0.00 0.00 31.33 2.43
266 267 4.737855 ACGTAGCATGGACTCATAGTTT 57.262 40.909 0.00 0.00 31.33 2.66
267 268 4.888239 AGTACGTAGCATGGACTCATAGTT 59.112 41.667 0.00 0.00 31.33 2.24
268 269 4.276183 CAGTACGTAGCATGGACTCATAGT 59.724 45.833 0.00 0.00 31.33 2.12
269 270 4.788690 CAGTACGTAGCATGGACTCATAG 58.211 47.826 0.00 0.00 31.33 2.23
270 271 3.004419 GCAGTACGTAGCATGGACTCATA 59.996 47.826 0.00 0.00 31.33 2.15
271 272 2.223829 GCAGTACGTAGCATGGACTCAT 60.224 50.000 0.00 0.00 0.00 2.90
272 273 1.134367 GCAGTACGTAGCATGGACTCA 59.866 52.381 0.00 0.00 0.00 3.41
273 274 1.405821 AGCAGTACGTAGCATGGACTC 59.594 52.381 9.22 0.00 0.00 3.36
274 275 1.135139 CAGCAGTACGTAGCATGGACT 59.865 52.381 9.22 0.00 0.00 3.85
275 276 1.560923 CAGCAGTACGTAGCATGGAC 58.439 55.000 9.22 0.00 0.00 4.02
276 277 0.179111 GCAGCAGTACGTAGCATGGA 60.179 55.000 9.22 0.00 0.00 3.41
277 278 0.460109 TGCAGCAGTACGTAGCATGG 60.460 55.000 9.22 0.59 0.00 3.66
278 279 0.647410 GTGCAGCAGTACGTAGCATG 59.353 55.000 9.33 4.25 37.56 4.06
279 280 0.246360 TGTGCAGCAGTACGTAGCAT 59.754 50.000 9.33 0.00 37.56 3.79
280 281 0.388520 CTGTGCAGCAGTACGTAGCA 60.389 55.000 9.22 6.03 40.27 3.49
281 282 2.363807 CTGTGCAGCAGTACGTAGC 58.636 57.895 0.00 0.00 40.27 3.58
290 291 0.109153 ATGTCTGGAACTGTGCAGCA 59.891 50.000 0.00 0.00 42.66 4.41
291 292 2.099141 TATGTCTGGAACTGTGCAGC 57.901 50.000 0.00 0.00 42.66 5.25
292 293 5.392380 GGAATTTATGTCTGGAACTGTGCAG 60.392 44.000 0.00 0.00 44.23 4.41
293 294 4.458989 GGAATTTATGTCTGGAACTGTGCA 59.541 41.667 0.00 0.00 0.00 4.57
294 295 4.458989 TGGAATTTATGTCTGGAACTGTGC 59.541 41.667 0.00 0.00 0.00 4.57
295 296 5.106157 GGTGGAATTTATGTCTGGAACTGTG 60.106 44.000 0.00 0.00 0.00 3.66
296 297 5.010282 GGTGGAATTTATGTCTGGAACTGT 58.990 41.667 0.00 0.00 0.00 3.55
297 298 5.009631 TGGTGGAATTTATGTCTGGAACTG 58.990 41.667 0.00 0.00 0.00 3.16
298 299 5.255397 TGGTGGAATTTATGTCTGGAACT 57.745 39.130 0.00 0.00 0.00 3.01
299 300 7.639113 TTATGGTGGAATTTATGTCTGGAAC 57.361 36.000 0.00 0.00 0.00 3.62
300 301 8.292444 CTTTATGGTGGAATTTATGTCTGGAA 57.708 34.615 0.00 0.00 0.00 3.53
301 302 7.880160 CTTTATGGTGGAATTTATGTCTGGA 57.120 36.000 0.00 0.00 0.00 3.86
695 696 0.889186 ACAGCACCCGCGATCTTTTT 60.889 50.000 8.23 0.00 45.49 1.94
874 880 4.070552 AGTTGACGAGGCGAGCCC 62.071 66.667 10.95 1.58 36.58 5.19
875 881 2.811317 CAGTTGACGAGGCGAGCC 60.811 66.667 5.89 5.89 0.00 4.70
876 882 2.811317 CCAGTTGACGAGGCGAGC 60.811 66.667 0.00 0.00 0.00 5.03
877 883 1.444553 GACCAGTTGACGAGGCGAG 60.445 63.158 0.00 0.00 0.00 5.03
878 884 1.740332 TTGACCAGTTGACGAGGCGA 61.740 55.000 0.00 0.00 0.00 5.54
879 885 0.878523 TTTGACCAGTTGACGAGGCG 60.879 55.000 0.00 0.00 0.00 5.52
880 886 0.586802 GTTTGACCAGTTGACGAGGC 59.413 55.000 0.00 0.00 0.00 4.70
927 933 2.206536 CCATCCTCTCTCCTCCGGC 61.207 68.421 0.00 0.00 0.00 6.13
1043 1067 4.610714 GGGAGGGATCGAAGCCGC 62.611 72.222 0.00 0.00 35.37 6.53
1044 1068 2.511452 ATGGGAGGGATCGAAGCCG 61.511 63.158 0.00 0.00 37.07 5.52
1045 1069 1.072159 CATGGGAGGGATCGAAGCC 59.928 63.158 0.00 0.00 0.00 4.35
1046 1070 1.072159 CCATGGGAGGGATCGAAGC 59.928 63.158 2.85 0.00 0.00 3.86
1047 1071 0.683973 CTCCATGGGAGGGATCGAAG 59.316 60.000 13.02 0.00 45.43 3.79
1048 1072 2.840199 CTCCATGGGAGGGATCGAA 58.160 57.895 13.02 0.00 45.43 3.71
1049 1073 4.627394 CTCCATGGGAGGGATCGA 57.373 61.111 13.02 0.00 45.43 3.59
1105 1129 2.747855 CCAAGAACCAGCTCCCGC 60.748 66.667 0.00 0.00 0.00 6.13
1160 1202 2.136878 CATCCTGGTCCCTCCTCCG 61.137 68.421 0.00 0.00 37.07 4.63
1350 1415 0.824109 TTTCACCGGCGATCTCATCT 59.176 50.000 9.30 0.00 0.00 2.90
1364 1429 4.106197 CCGTCTCAGTACTGCTATTTCAC 58.894 47.826 18.45 5.51 0.00 3.18
1365 1430 3.428999 GCCGTCTCAGTACTGCTATTTCA 60.429 47.826 18.45 0.00 0.00 2.69
1367 1432 2.479730 CGCCGTCTCAGTACTGCTATTT 60.480 50.000 18.45 0.00 0.00 1.40
1373 1438 2.324332 ATCGCGCCGTCTCAGTACTG 62.324 60.000 17.17 17.17 0.00 2.74
1377 1442 4.194720 GGATCGCGCCGTCTCAGT 62.195 66.667 0.00 0.00 0.00 3.41
1387 1452 1.215655 GGGAAACAGATCGGATCGCG 61.216 60.000 12.08 0.00 0.00 5.87
1403 1468 2.625460 CCTCCAAATGCCCTGGGGA 61.625 63.158 16.03 13.29 36.42 4.81
1405 1470 2.761213 GCCTCCAAATGCCCTGGG 60.761 66.667 8.86 8.86 34.46 4.45
1406 1471 3.142838 CGCCTCCAAATGCCCTGG 61.143 66.667 0.00 0.00 35.05 4.45
2169 2253 0.035056 GCATGTAGAAGGGGTGCACT 60.035 55.000 17.98 0.00 35.93 4.40
2317 2434 2.342648 GAACGACGAGGGCCTGTT 59.657 61.111 12.95 9.10 0.00 3.16
2549 2674 0.732880 CGACAGACGCGAATCCAGTT 60.733 55.000 15.93 0.00 34.51 3.16
2551 2676 1.134530 GACGACAGACGCGAATCCAG 61.135 60.000 15.93 2.08 46.94 3.86
2613 2738 7.360946 GGTTAAAGACGAACTCTAATGCAACAT 60.361 37.037 0.00 0.00 0.00 2.71
2622 2747 7.223260 TGATCAAGGTTAAAGACGAACTCTA 57.777 36.000 0.00 0.00 0.00 2.43
2632 2757 5.447818 GCACGGAGATTGATCAAGGTTAAAG 60.448 44.000 14.54 4.73 0.00 1.85
2633 2758 4.394920 GCACGGAGATTGATCAAGGTTAAA 59.605 41.667 14.54 0.00 0.00 1.52
2662 2787 5.579119 GCCTCAAAAACGGTAATAAAATGGG 59.421 40.000 0.00 0.00 0.00 4.00
2663 2788 5.287513 CGCCTCAAAAACGGTAATAAAATGG 59.712 40.000 0.00 0.00 0.00 3.16
2664 2789 5.859648 ACGCCTCAAAAACGGTAATAAAATG 59.140 36.000 0.00 0.00 0.00 2.32
2665 2790 5.859648 CACGCCTCAAAAACGGTAATAAAAT 59.140 36.000 0.00 0.00 0.00 1.82
2666 2791 5.213675 CACGCCTCAAAAACGGTAATAAAA 58.786 37.500 0.00 0.00 0.00 1.52
2667 2792 4.785417 CACGCCTCAAAAACGGTAATAAA 58.215 39.130 0.00 0.00 0.00 1.40
2668 2793 3.365164 GCACGCCTCAAAAACGGTAATAA 60.365 43.478 0.00 0.00 0.00 1.40
2669 2794 2.160022 GCACGCCTCAAAAACGGTAATA 59.840 45.455 0.00 0.00 0.00 0.98
2670 2795 1.068816 GCACGCCTCAAAAACGGTAAT 60.069 47.619 0.00 0.00 0.00 1.89
2671 2796 0.308376 GCACGCCTCAAAAACGGTAA 59.692 50.000 0.00 0.00 0.00 2.85
2672 2797 1.508808 GGCACGCCTCAAAAACGGTA 61.509 55.000 0.00 0.00 0.00 4.02
2685 2822 1.875813 CTCTCATCACGAGGCACGC 60.876 63.158 3.72 0.00 46.94 5.34
2887 3268 0.177141 GCCAGTAGTGGGCGTCAATA 59.823 55.000 18.46 0.00 45.17 1.90
2905 3286 3.667282 CAGTGCCAGTGCCAGTGC 61.667 66.667 0.00 0.00 36.33 4.40
2906 3287 2.981909 CCAGTGCCAGTGCCAGTG 60.982 66.667 1.87 1.87 36.33 3.66
2907 3288 4.962836 GCCAGTGCCAGTGCCAGT 62.963 66.667 0.00 0.00 36.33 4.00
2908 3289 4.960866 TGCCAGTGCCAGTGCCAG 62.961 66.667 0.00 0.00 36.33 4.85
2910 3291 4.962836 AGTGCCAGTGCCAGTGCC 62.963 66.667 0.00 0.00 36.33 5.01
2911 3292 3.360340 GAGTGCCAGTGCCAGTGC 61.360 66.667 0.00 0.00 36.33 4.40
2912 3293 3.046087 CGAGTGCCAGTGCCAGTG 61.046 66.667 0.00 0.00 36.33 3.66
2952 3337 7.539366 CGATCTTCGAGGAAAATCTTATCTACC 59.461 40.741 0.00 0.00 43.74 3.18
3022 3419 9.737427 TCGTAGTTCACACTAGTAGTATAGTAC 57.263 37.037 9.38 9.38 36.09 2.73
3028 3425 6.810676 CAGAGTCGTAGTTCACACTAGTAGTA 59.189 42.308 1.57 0.00 36.09 1.82
3029 3426 5.638657 CAGAGTCGTAGTTCACACTAGTAGT 59.361 44.000 0.00 0.00 36.09 2.73
3030 3427 5.063691 CCAGAGTCGTAGTTCACACTAGTAG 59.936 48.000 0.00 0.00 36.09 2.57
3031 3428 4.934001 CCAGAGTCGTAGTTCACACTAGTA 59.066 45.833 0.00 0.00 36.09 1.82
3032 3429 3.752222 CCAGAGTCGTAGTTCACACTAGT 59.248 47.826 0.00 0.00 36.09 2.57
3033 3430 3.752222 ACCAGAGTCGTAGTTCACACTAG 59.248 47.826 0.00 0.00 36.09 2.57
3034 3431 3.748083 ACCAGAGTCGTAGTTCACACTA 58.252 45.455 0.00 0.00 34.06 2.74
3035 3432 2.584236 ACCAGAGTCGTAGTTCACACT 58.416 47.619 0.00 0.00 36.99 3.55
3036 3433 3.501445 ACTACCAGAGTCGTAGTTCACAC 59.499 47.826 5.33 0.00 42.98 3.82
3037 3434 3.748083 ACTACCAGAGTCGTAGTTCACA 58.252 45.455 5.33 0.00 42.98 3.58
3038 3435 4.692625 TGTACTACCAGAGTCGTAGTTCAC 59.307 45.833 13.83 9.11 42.98 3.18
3039 3436 4.898320 TGTACTACCAGAGTCGTAGTTCA 58.102 43.478 13.83 12.40 42.98 3.18
3040 3437 5.869753 TTGTACTACCAGAGTCGTAGTTC 57.130 43.478 13.83 10.48 42.98 3.01
3041 3438 5.767168 AGTTTGTACTACCAGAGTCGTAGTT 59.233 40.000 13.83 2.55 42.98 2.24
3042 3439 5.180868 CAGTTTGTACTACCAGAGTCGTAGT 59.819 44.000 13.32 13.32 46.29 2.73
3044 3441 5.065914 ACAGTTTGTACTACCAGAGTCGTA 58.934 41.667 0.00 0.00 39.81 3.43
3045 3442 3.887716 ACAGTTTGTACTACCAGAGTCGT 59.112 43.478 0.00 0.00 39.81 4.34
3046 3443 4.500603 ACAGTTTGTACTACCAGAGTCG 57.499 45.455 0.00 0.00 39.81 4.18
3047 3444 6.511282 GCAAAACAGTTTGTACTACCAGAGTC 60.511 42.308 0.00 0.00 45.06 3.36
3050 3447 5.186942 TGCAAAACAGTTTGTACTACCAGA 58.813 37.500 0.00 0.00 45.06 3.86
3051 3448 5.493133 TGCAAAACAGTTTGTACTACCAG 57.507 39.130 0.00 0.00 45.06 4.00
3052 3449 5.493133 CTGCAAAACAGTTTGTACTACCA 57.507 39.130 0.00 0.00 45.06 3.25
3094 3491 8.057013 TTGTTAGTACAGTATAGCACTTGGCAG 61.057 40.741 0.00 0.00 39.44 4.85
3095 3492 6.295405 TTGTTAGTACAGTATAGCACTTGGCA 60.295 38.462 0.00 0.00 39.44 4.92
3096 3493 5.657474 TGTTAGTACAGTATAGCACTTGGC 58.343 41.667 0.00 0.00 45.30 4.52
3099 3496 7.764443 CACCATTGTTAGTACAGTATAGCACTT 59.236 37.037 0.00 0.00 34.26 3.16
3100 3497 7.093465 ACACCATTGTTAGTACAGTATAGCACT 60.093 37.037 0.00 0.00 35.28 4.40
3101 3498 7.039882 ACACCATTGTTAGTACAGTATAGCAC 58.960 38.462 0.00 0.00 35.28 4.40
3102 3499 7.177832 ACACCATTGTTAGTACAGTATAGCA 57.822 36.000 0.00 0.00 35.28 3.49
3103 3500 8.411683 ACTACACCATTGTTAGTACAGTATAGC 58.588 37.037 0.00 0.00 37.15 2.97
3106 3503 8.411683 GCTACTACACCATTGTTAGTACAGTAT 58.588 37.037 0.00 0.00 37.15 2.12
3107 3504 7.414429 CGCTACTACACCATTGTTAGTACAGTA 60.414 40.741 0.00 0.00 37.15 2.74
3109 3506 5.742453 CGCTACTACACCATTGTTAGTACAG 59.258 44.000 0.00 0.00 37.15 2.74
3110 3507 5.183713 ACGCTACTACACCATTGTTAGTACA 59.816 40.000 0.00 0.00 37.15 2.90
3152 3566 2.031857 CAGATACTCCTCCGTCGTAAGC 60.032 54.545 0.00 0.00 37.18 3.09
3164 3578 4.509600 GTGCTTGCTTGATACAGATACTCC 59.490 45.833 0.00 0.00 0.00 3.85
3217 3634 1.270147 ACGTTGTACTCCTTGACAGCC 60.270 52.381 0.00 0.00 0.00 4.85
3283 3708 0.184211 GGGGTACGGTAATGGGCATT 59.816 55.000 0.00 0.00 34.93 3.56
3369 3800 6.073327 AGATGAGATCGAAAATGCGTAGTA 57.927 37.500 0.00 0.00 0.00 1.82
3370 3801 4.938080 AGATGAGATCGAAAATGCGTAGT 58.062 39.130 0.00 0.00 0.00 2.73
3371 3802 4.384247 GGAGATGAGATCGAAAATGCGTAG 59.616 45.833 0.00 0.00 0.00 3.51
3397 3828 1.745827 CGAGGCGATGGTTTTATGGGT 60.746 52.381 0.00 0.00 0.00 4.51
3503 3947 4.801624 TCACTGCGCTGCTAGCCG 62.802 66.667 13.29 10.74 38.18 5.52
3510 3954 0.522705 GTGCATGATTCACTGCGCTG 60.523 55.000 13.23 13.23 43.69 5.18
3529 3974 6.334102 AGTCTAGATAGGGCGTTAAATGAG 57.666 41.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.