Multiple sequence alignment - TraesCS5D01G235200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5D01G235200
chr5D
100.000
6783
0
0
1
6783
343285121
343291903
0.000000e+00
12526.0
1
TraesCS5D01G235200
chr5A
90.821
4249
205
66
84
4237
444262439
444266597
0.000000e+00
5515.0
2
TraesCS5D01G235200
chr5A
92.099
1582
66
23
4649
6180
444267259
444268831
0.000000e+00
2174.0
3
TraesCS5D01G235200
chr5A
90.594
404
26
8
4253
4652
444266800
444267195
6.030000e-145
525.0
4
TraesCS5D01G235200
chr5A
87.209
258
14
7
6528
6783
444269186
444269426
6.700000e-70
276.0
5
TraesCS5D01G235200
chr5A
91.304
184
12
2
6259
6438
444268880
444269063
1.460000e-61
248.0
6
TraesCS5D01G235200
chr5A
91.176
68
3
2
27
94
444262348
444262412
9.370000e-14
89.8
7
TraesCS5D01G235200
chr5B
91.059
3892
189
68
22
3866
403541937
403545716
0.000000e+00
5112.0
8
TraesCS5D01G235200
chr5B
94.526
1772
55
17
4649
6401
403546605
403548353
0.000000e+00
2697.0
9
TraesCS5D01G235200
chr5B
90.571
700
31
13
3969
4652
403545862
403546542
0.000000e+00
894.0
10
TraesCS5D01G235200
chr5B
90.136
294
14
4
6490
6783
403548400
403548678
1.070000e-97
368.0
11
TraesCS5D01G235200
chr5B
100.000
29
0
0
3868
3896
403545833
403545861
3.000000e-03
54.7
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5D01G235200
chr5D
343285121
343291903
6782
False
12526.00
12526
100.000000
1
6783
1
chr5D.!!$F1
6782
1
TraesCS5D01G235200
chr5A
444262348
444269426
7078
False
1471.30
5515
90.533833
27
6783
6
chr5A.!!$F1
6756
2
TraesCS5D01G235200
chr5B
403541937
403548678
6741
False
1825.14
5112
93.258400
22
6783
5
chr5B.!!$F1
6761
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
180
221
0.169672
CTGCCGAATCTGCAACAAGG
59.830
55.000
0.34
0.00
38.46
3.61
F
1180
1288
0.029567
CTCCGCCTACATGTCGTCTC
59.970
60.000
0.00
0.00
0.00
3.36
F
1238
1354
0.179012
GTGGGTTCGGGGTTTCTGAA
60.179
55.000
0.00
0.00
38.35
3.02
F
1615
1740
0.392998
ATGCCTGAAATTCCGCGAGT
60.393
50.000
8.23
0.00
0.00
4.18
F
2649
2798
0.671781
CGGTGAGAACAGCTTGGAGG
60.672
60.000
0.00
0.00
41.65
4.30
F
3152
3304
1.004610
CGGTCATATGCAGCAGTTTCG
60.005
52.381
0.00
0.00
0.00
3.46
F
3533
3685
1.453155
CAATGGAGGACCTCAAACCG
58.547
55.000
23.06
3.52
37.04
4.44
F
4960
5505
1.454104
CCACTACAACCAGGTGGCA
59.546
57.895
0.00
0.00
42.91
4.92
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1320
1445
0.178941
TCCCTATCCTCGCCCCTAAC
60.179
60.0
0.00
0.00
0.00
2.34
R
2689
2838
0.248784
GGCATCAGAAATGGCTTCGC
60.249
55.0
4.51
0.00
40.85
4.70
R
3152
3304
0.314302
CTGGGATGGTACGATCGTCC
59.686
60.0
26.48
23.79
39.08
4.79
R
3314
3466
0.323957
ACTTGGCCTTCTCGGTAACC
59.676
55.0
3.32
0.00
34.25
2.85
R
3515
3667
1.064825
ACGGTTTGAGGTCCTCCATT
58.935
50.0
16.60
0.00
35.89
3.16
R
4741
5286
0.390860
ACAGGATGGATAGCGCTGTC
59.609
55.0
24.41
24.41
43.62
3.51
R
5263
5808
0.249657
GCATCGACTCCTCCATGACC
60.250
60.0
0.00
0.00
0.00
4.02
R
6183
6778
0.179179
GATCGAAGTGGCAAGCAAGC
60.179
55.0
0.00
0.00
0.00
4.01
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
144
185
6.882768
AAAAGGAGATCAGGTATCTTGTCT
57.117
37.500
0.00
0.00
45.35
3.41
145
186
7.979786
AAAAGGAGATCAGGTATCTTGTCTA
57.020
36.000
0.00
0.00
45.35
2.59
146
187
7.979786
AAAGGAGATCAGGTATCTTGTCTAA
57.020
36.000
0.00
0.00
45.35
2.10
147
188
8.560124
AAAGGAGATCAGGTATCTTGTCTAAT
57.440
34.615
0.00
0.00
45.35
1.73
148
189
9.661954
AAAGGAGATCAGGTATCTTGTCTAATA
57.338
33.333
0.00
0.00
45.35
0.98
149
190
9.661954
AAGGAGATCAGGTATCTTGTCTAATAA
57.338
33.333
0.00
0.00
45.35
1.40
150
191
9.836179
AGGAGATCAGGTATCTTGTCTAATAAT
57.164
33.333
0.00
0.00
45.35
1.28
180
221
0.169672
CTGCCGAATCTGCAACAAGG
59.830
55.000
0.34
0.00
38.46
3.61
332
389
3.012518
AGCACGAATGGAAAGGATCTTG
58.987
45.455
0.00
0.00
0.00
3.02
333
390
3.009723
GCACGAATGGAAAGGATCTTGA
58.990
45.455
0.00
0.00
0.00
3.02
355
414
1.839424
ATAAAGTGCAGGTGAAGGGC
58.161
50.000
0.00
0.00
0.00
5.19
431
497
0.917821
AACCTAACCCCTACCTGGCC
60.918
60.000
0.00
0.00
0.00
5.36
529
595
4.271816
CCTCGCCGTCCGATCAGG
62.272
72.222
0.00
0.00
46.31
3.86
561
633
1.412606
CTTCACGTCGCGCTTTCTC
59.587
57.895
5.56
0.00
0.00
2.87
564
636
1.002250
TCACGTCGCGCTTTCTCTTC
61.002
55.000
5.56
0.00
0.00
2.87
567
639
1.606350
CGTCGCGCTTTCTCTTCGTT
61.606
55.000
5.56
0.00
0.00
3.85
568
640
0.507358
GTCGCGCTTTCTCTTCGTTT
59.493
50.000
5.56
0.00
0.00
3.60
570
642
0.451135
CGCGCTTTCTCTTCGTTTGG
60.451
55.000
5.56
0.00
0.00
3.28
571
643
0.586802
GCGCTTTCTCTTCGTTTGGT
59.413
50.000
0.00
0.00
0.00
3.67
572
644
1.660333
GCGCTTTCTCTTCGTTTGGTG
60.660
52.381
0.00
0.00
0.00
4.17
573
645
1.660333
CGCTTTCTCTTCGTTTGGTGC
60.660
52.381
0.00
0.00
0.00
5.01
574
646
1.660333
GCTTTCTCTTCGTTTGGTGCG
60.660
52.381
0.00
0.00
0.00
5.34
575
647
1.864711
CTTTCTCTTCGTTTGGTGCGA
59.135
47.619
0.00
0.00
36.51
5.10
576
648
1.497991
TTCTCTTCGTTTGGTGCGAG
58.502
50.000
0.00
0.00
39.61
5.03
577
649
0.944311
TCTCTTCGTTTGGTGCGAGC
60.944
55.000
0.00
0.00
39.61
5.03
578
650
2.170985
CTTCGTTTGGTGCGAGCG
59.829
61.111
0.00
0.00
39.61
5.03
579
651
3.911155
CTTCGTTTGGTGCGAGCGC
62.911
63.158
8.08
8.08
39.61
5.92
615
687
3.101428
CGGACCCGTTCGTTCGTG
61.101
66.667
0.00
0.00
29.74
4.35
623
695
2.353261
TTCGTTCGTGCGTGCGTA
60.353
55.556
9.23
0.00
0.00
4.42
624
696
2.638074
TTCGTTCGTGCGTGCGTAC
61.638
57.895
2.83
2.83
0.00
3.67
764
842
4.388499
TCTTTCCCCGTGCCTCGC
62.388
66.667
0.00
0.00
38.35
5.03
841
926
1.423794
TTGTTTTCCTCGCCCTCCCT
61.424
55.000
0.00
0.00
0.00
4.20
842
927
1.078356
GTTTTCCTCGCCCTCCCTC
60.078
63.158
0.00
0.00
0.00
4.30
891
977
2.503375
GACGTCCACGGCGTACAG
60.503
66.667
14.22
7.34
43.04
2.74
894
980
2.506438
GTCCACGGCGTACAGAGC
60.506
66.667
14.22
1.94
0.00
4.09
912
998
2.758327
ACGGCAGGATCGGCAGTA
60.758
61.111
11.03
0.00
37.90
2.74
913
999
2.028190
CGGCAGGATCGGCAGTAG
59.972
66.667
9.79
0.00
0.00
2.57
914
1000
2.786495
CGGCAGGATCGGCAGTAGT
61.786
63.158
9.79
0.00
0.00
2.73
915
1001
1.522569
GGCAGGATCGGCAGTAGTT
59.477
57.895
9.79
0.00
0.00
2.24
916
1002
0.811616
GGCAGGATCGGCAGTAGTTG
60.812
60.000
9.79
0.00
0.00
3.16
1020
1128
2.499685
GATGTCGTCGGGGAAGGG
59.500
66.667
0.00
0.00
0.00
3.95
1180
1288
0.029567
CTCCGCCTACATGTCGTCTC
59.970
60.000
0.00
0.00
0.00
3.36
1236
1352
1.964373
CGTGGGTTCGGGGTTTCTG
60.964
63.158
0.00
0.00
0.00
3.02
1237
1353
1.452801
GTGGGTTCGGGGTTTCTGA
59.547
57.895
0.00
0.00
0.00
3.27
1238
1354
0.179012
GTGGGTTCGGGGTTTCTGAA
60.179
55.000
0.00
0.00
38.35
3.02
1281
1401
0.863144
TGTTTTAGCTCGTCGTTGGC
59.137
50.000
0.00
0.00
0.00
4.52
1307
1432
0.609131
ACTGATTGGCGGGTTTCCTG
60.609
55.000
0.00
0.00
0.00
3.86
1313
1438
1.110518
TGGCGGGTTTCCTGGTTTTC
61.111
55.000
0.00
0.00
0.00
2.29
1320
1445
2.540157
GGTTTCCTGGTTTTCGTTGTCG
60.540
50.000
0.00
0.00
38.55
4.35
1322
1447
2.027003
TCCTGGTTTTCGTTGTCGTT
57.973
45.000
0.00
0.00
38.33
3.85
1336
1461
0.597072
GTCGTTAGGGGCGAGGATAG
59.403
60.000
0.00
0.00
39.14
2.08
1482
1607
1.153147
GAGGATTTCGTGGAGGGCC
60.153
63.158
0.00
0.00
0.00
5.80
1497
1622
4.770874
GCCTGGCCGCCTACGAAA
62.771
66.667
11.61
0.00
43.93
3.46
1615
1740
0.392998
ATGCCTGAAATTCCGCGAGT
60.393
50.000
8.23
0.00
0.00
4.18
1684
1809
1.884235
CACGAGGAGAAAAAGCAGGT
58.116
50.000
0.00
0.00
0.00
4.00
1769
1906
3.904339
AGGTGCTAGTGGAAGAAGAAGAA
59.096
43.478
0.00
0.00
0.00
2.52
1777
1914
3.929610
GTGGAAGAAGAAGAAGACGATGG
59.070
47.826
0.00
0.00
0.00
3.51
1838
1975
4.084888
GCCACGCACAACTACCGC
62.085
66.667
0.00
0.00
0.00
5.68
1844
1981
1.352156
CGCACAACTACCGCTTCCTC
61.352
60.000
0.00
0.00
0.00
3.71
1966
2109
3.173240
GCGAAGAGTGGTCGACGC
61.173
66.667
9.92
2.99
41.02
5.19
2108
2251
4.389576
GTGTCCAAAGGCAGCGCG
62.390
66.667
0.00
0.00
0.00
6.86
2129
2272
2.997897
AGCGGGAGGACGAGCTTT
60.998
61.111
0.00
0.00
36.41
3.51
2253
2396
1.893801
TCCACTCGGAGAAAGACTTCC
59.106
52.381
12.86
0.00
35.91
3.46
2363
2506
1.345741
CAGCTGTCTTTCCAGGACTCA
59.654
52.381
5.25
0.00
35.04
3.41
2649
2798
0.671781
CGGTGAGAACAGCTTGGAGG
60.672
60.000
0.00
0.00
41.65
4.30
2654
2803
2.026822
TGAGAACAGCTTGGAGGATTCC
60.027
50.000
0.00
0.00
44.31
3.01
2883
3035
1.066858
CAGCCAGTACGAATGGTCAGT
60.067
52.381
1.96
0.00
40.17
3.41
2951
3103
3.724374
TGTTTTGGTAGAAGGTCACTCG
58.276
45.455
0.00
0.00
0.00
4.18
3044
3196
2.027385
GATTTCATGGGAAGCCCTGAC
58.973
52.381
3.85
0.00
45.70
3.51
3092
3244
6.037940
GCAGAAATGCTCATTCAGATGAACTA
59.962
38.462
0.00
0.00
41.55
2.24
3152
3304
1.004610
CGGTCATATGCAGCAGTTTCG
60.005
52.381
0.00
0.00
0.00
3.46
3166
3318
1.747355
AGTTTCGGACGATCGTACCAT
59.253
47.619
24.39
0.00
0.00
3.55
3203
3355
5.068987
AGAGCAGGAATTCAGTAGAGATGAC
59.931
44.000
7.93
0.00
0.00
3.06
3251
3403
3.482786
CGAGAAAATTTCAGAGCCAACG
58.517
45.455
8.55
0.00
0.00
4.10
3254
3406
3.888930
AGAAAATTTCAGAGCCAACGGAA
59.111
39.130
8.55
0.00
0.00
4.30
3267
3419
2.032550
CCAACGGAAGATAAGCATGCTG
59.967
50.000
23.48
8.50
0.00
4.41
3314
3466
1.726791
CCTCGACATGTCCACTTTTCG
59.273
52.381
20.03
6.62
0.00
3.46
3354
3506
1.739049
CTGGACGAGGAGCAGGATC
59.261
63.158
0.00
0.00
0.00
3.36
3515
3667
2.281484
GAGTCACCAAAGGCGCCA
60.281
61.111
31.54
1.71
0.00
5.69
3533
3685
1.453155
CAATGGAGGACCTCAAACCG
58.547
55.000
23.06
3.52
37.04
4.44
3691
3843
3.928727
TCACACTACCAGTTTACTCCG
57.071
47.619
0.00
0.00
0.00
4.63
3803
3955
3.490933
GCAAAACCCACCTTTCTCTGAAC
60.491
47.826
0.00
0.00
0.00
3.18
3866
4018
7.976175
TGGTTCATCATAATCGCAGATATCTAC
59.024
37.037
4.54
0.00
45.12
2.59
4032
4299
2.483876
TGAGGAAACGCTCAAAGTGAG
58.516
47.619
0.72
0.72
46.90
3.51
4237
4524
9.846248
CTTAATATTTAATACAGAATGCAGGGC
57.154
33.333
0.00
0.00
42.53
5.19
4244
4718
6.736110
AATACAGAATGCAGGGCAAATAAT
57.264
33.333
0.00
0.00
43.62
1.28
4251
4725
5.617528
ATGCAGGGCAAATAATTGATTGA
57.382
34.783
8.68
0.00
43.62
2.57
4258
4732
6.837568
AGGGCAAATAATTGATTGAGATCACT
59.162
34.615
8.68
0.00
41.84
3.41
4361
4835
5.540337
AGCTATGGTGATCGATTAGGAGAAA
59.460
40.000
0.00
0.00
0.00
2.52
4362
4836
6.042093
AGCTATGGTGATCGATTAGGAGAAAA
59.958
38.462
0.00
0.00
0.00
2.29
4363
4837
6.146347
GCTATGGTGATCGATTAGGAGAAAAC
59.854
42.308
0.00
0.00
0.00
2.43
4364
4838
5.414789
TGGTGATCGATTAGGAGAAAACA
57.585
39.130
0.00
0.00
0.00
2.83
4454
4929
6.432472
GGGAAAGAGAGATGTTCTTCAATTGT
59.568
38.462
5.13
0.00
35.87
2.71
4485
4960
2.005451
CTGGGAAGAATGCAGAACTCG
58.995
52.381
0.00
0.00
0.00
4.18
4504
4979
6.651975
ACTCGGTAGTCCATTCCTTTATAG
57.348
41.667
0.00
0.00
0.00
1.31
4505
4980
5.010820
ACTCGGTAGTCCATTCCTTTATAGC
59.989
44.000
0.00
0.00
0.00
2.97
4506
4981
4.282703
TCGGTAGTCCATTCCTTTATAGCC
59.717
45.833
0.00
0.00
0.00
3.93
4507
4982
4.039973
CGGTAGTCCATTCCTTTATAGCCA
59.960
45.833
0.00
0.00
0.00
4.75
4590
5068
7.439356
GTGTCTATGAAGCATTGCATCTACTAA
59.561
37.037
14.30
0.00
0.00
2.24
4592
5070
7.655328
GTCTATGAAGCATTGCATCTACTAACT
59.345
37.037
14.30
0.00
0.00
2.24
4678
5223
3.372206
GTGCTGATGTACTGAATGTCACC
59.628
47.826
0.00
0.00
0.00
4.02
4714
5259
2.208349
AGAGGGCCCCAACAGTCT
59.792
61.111
21.43
11.18
0.00
3.24
4918
5463
2.113774
CAAGCCTGTGACCTGCCA
59.886
61.111
0.00
0.00
0.00
4.92
4960
5505
1.454104
CCACTACAACCAGGTGGCA
59.546
57.895
0.00
0.00
42.91
4.92
5111
5656
7.772292
TGATAAGAGGTGAGGATTCTGAAATTG
59.228
37.037
0.00
0.00
0.00
2.32
5115
5660
6.214412
AGAGGTGAGGATTCTGAAATTGTAGT
59.786
38.462
0.00
0.00
0.00
2.73
5122
5667
6.825721
AGGATTCTGAAATTGTAGTAGCCAAG
59.174
38.462
0.00
0.00
0.00
3.61
5131
5676
1.684983
GTAGTAGCCAAGGGTGCGATA
59.315
52.381
0.13
0.00
33.62
2.92
5156
5701
7.744087
TCTGCTACTGAATTTAGCTTGAAAA
57.256
32.000
8.66
0.00
42.21
2.29
5159
5704
8.746922
TGCTACTGAATTTAGCTTGAAAAATG
57.253
30.769
8.66
0.00
42.21
2.32
5160
5705
7.329226
TGCTACTGAATTTAGCTTGAAAAATGC
59.671
33.333
8.66
0.00
42.21
3.56
5165
5710
6.869913
TGAATTTAGCTTGAAAAATGCTGAGG
59.130
34.615
0.00
0.00
39.49
3.86
5314
5859
1.734465
GAGTTCATCAAGGCCGACAAG
59.266
52.381
0.00
0.00
0.00
3.16
5424
5969
2.224018
ACGCCACGTTACAGAAGGTAAA
60.224
45.455
0.00
0.00
43.30
2.01
5433
5978
6.644181
ACGTTACAGAAGGTAAAGCTTTACTC
59.356
38.462
35.94
28.83
43.30
2.59
5588
6156
0.401738
CAAGAAGCCCAAGGAGGACA
59.598
55.000
0.00
0.00
41.22
4.02
5767
6335
1.656587
TCTTGCTCTTCCCCTGCTTA
58.343
50.000
0.00
0.00
0.00
3.09
5784
6352
7.339466
CCCCTGCTTAGAGTACAAAACATAAAT
59.661
37.037
0.00
0.00
0.00
1.40
5894
6488
1.741770
CAGCTTACACAGGTCGGGC
60.742
63.158
0.00
0.00
0.00
6.13
5975
6569
8.842358
TGTAAGTTTACTTATTACTTGCAGCT
57.158
30.769
5.70
0.00
38.82
4.24
5983
6577
0.175760
TTACTTGCAGCTCCTAGCCG
59.824
55.000
0.00
0.00
43.77
5.52
6129
6724
0.554305
ATGAAGCCATCCTGCATCCA
59.446
50.000
0.00
0.00
34.53
3.41
6364
6973
0.468226
TCTAATGGCGGCCTTACTGG
59.532
55.000
21.46
2.13
39.35
4.00
6452
7061
1.791103
TTTGTGCCCTACGCTTGTGC
61.791
55.000
0.00
0.00
38.78
4.57
6457
7066
2.813908
CCTACGCTTGTGCCGTCC
60.814
66.667
0.00
0.00
35.36
4.79
6476
7085
6.143919
GCCGTCCTTTTATTTTTCACTTTCTG
59.856
38.462
0.00
0.00
0.00
3.02
6478
7087
6.918022
CGTCCTTTTATTTTTCACTTTCTGCT
59.082
34.615
0.00
0.00
0.00
4.24
6481
7090
8.137437
TCCTTTTATTTTTCACTTTCTGCTCTG
58.863
33.333
0.00
0.00
0.00
3.35
6483
7092
9.950680
CTTTTATTTTTCACTTTCTGCTCTGTA
57.049
29.630
0.00
0.00
0.00
2.74
6485
7094
9.897744
TTTATTTTTCACTTTCTGCTCTGTATG
57.102
29.630
0.00
0.00
0.00
2.39
6507
7116
2.095718
GTGTGGTGATTTCCTCGCTTTC
60.096
50.000
0.00
0.00
34.65
2.62
6518
7127
2.228822
TCCTCGCTTTCATTCAAAAGGC
59.771
45.455
0.00
0.00
36.86
4.35
6571
7234
1.971695
GGGGCTCACCGTTGAAAGG
60.972
63.158
0.00
0.00
41.60
3.11
6575
7238
1.901650
GCTCACCGTTGAAAGGAGCG
61.902
60.000
3.66
0.00
41.18
5.03
6624
7287
1.229975
TGCATTCAGTGGCGTGACAG
61.230
55.000
0.00
0.00
0.00
3.51
6625
7288
1.499056
CATTCAGTGGCGTGACAGC
59.501
57.895
0.00
0.00
0.00
4.40
6628
7291
2.636778
TTCAGTGGCGTGACAGCGAA
62.637
55.000
0.00
0.00
38.18
4.70
6652
7315
1.524961
CGAATGGGTTGGATCGGGA
59.475
57.895
0.00
0.00
0.00
5.14
6656
7319
1.700042
ATGGGTTGGATCGGGAGAGC
61.700
60.000
0.00
0.00
45.48
4.09
6675
7338
3.636231
CCAGGCCACCACCGAGAA
61.636
66.667
5.01
0.00
33.69
2.87
6676
7339
2.358737
CAGGCCACCACCGAGAAC
60.359
66.667
5.01
0.00
33.69
3.01
6677
7340
4.003788
AGGCCACCACCGAGAACG
62.004
66.667
5.01
0.00
39.43
3.95
6678
7341
3.998672
GGCCACCACCGAGAACGA
61.999
66.667
0.00
0.00
42.66
3.85
6679
7342
2.432628
GCCACCACCGAGAACGAG
60.433
66.667
0.00
0.00
42.66
4.18
6680
7343
2.432628
CCACCACCGAGAACGAGC
60.433
66.667
0.00
0.00
42.66
5.03
6681
7344
2.432628
CACCACCGAGAACGAGCC
60.433
66.667
0.00
0.00
42.66
4.70
6682
7345
3.692406
ACCACCGAGAACGAGCCC
61.692
66.667
0.00
0.00
42.66
5.19
6683
7346
4.452733
CCACCGAGAACGAGCCCC
62.453
72.222
0.00
0.00
42.66
5.80
6684
7347
3.691342
CACCGAGAACGAGCCCCA
61.691
66.667
0.00
0.00
42.66
4.96
6685
7348
3.382832
ACCGAGAACGAGCCCCAG
61.383
66.667
0.00
0.00
42.66
4.45
6686
7349
4.148825
CCGAGAACGAGCCCCAGG
62.149
72.222
0.00
0.00
42.66
4.45
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
22
7.916450
TGTTGATTTATCTTCGTTTCCGTTTTT
59.084
29.630
0.00
0.00
35.01
1.94
22
23
7.377662
GTGTTGATTTATCTTCGTTTCCGTTTT
59.622
33.333
0.00
0.00
35.01
2.43
23
24
6.854381
GTGTTGATTTATCTTCGTTTCCGTTT
59.146
34.615
0.00
0.00
35.01
3.60
24
25
6.368213
GTGTTGATTTATCTTCGTTTCCGTT
58.632
36.000
0.00
0.00
35.01
4.44
25
26
5.106830
GGTGTTGATTTATCTTCGTTTCCGT
60.107
40.000
0.00
0.00
35.01
4.69
26
27
5.321516
GGTGTTGATTTATCTTCGTTTCCG
58.678
41.667
0.00
0.00
0.00
4.30
27
28
5.321516
CGGTGTTGATTTATCTTCGTTTCC
58.678
41.667
0.00
0.00
0.00
3.13
28
29
5.121142
TCCGGTGTTGATTTATCTTCGTTTC
59.879
40.000
0.00
0.00
0.00
2.78
29
30
4.998672
TCCGGTGTTGATTTATCTTCGTTT
59.001
37.500
0.00
0.00
0.00
3.60
30
31
4.571919
TCCGGTGTTGATTTATCTTCGTT
58.428
39.130
0.00
0.00
0.00
3.85
31
32
4.196626
TCCGGTGTTGATTTATCTTCGT
57.803
40.909
0.00
0.00
0.00
3.85
32
33
4.491924
CGTTCCGGTGTTGATTTATCTTCG
60.492
45.833
0.00
0.00
0.00
3.79
33
34
4.628333
TCGTTCCGGTGTTGATTTATCTTC
59.372
41.667
0.00
0.00
0.00
2.87
34
35
4.571919
TCGTTCCGGTGTTGATTTATCTT
58.428
39.130
0.00
0.00
0.00
2.40
35
36
4.196626
TCGTTCCGGTGTTGATTTATCT
57.803
40.909
0.00
0.00
0.00
1.98
36
37
4.260620
CCATCGTTCCGGTGTTGATTTATC
60.261
45.833
0.00
0.00
36.10
1.75
37
38
3.625764
CCATCGTTCCGGTGTTGATTTAT
59.374
43.478
0.00
0.00
36.10
1.40
38
39
3.004171
CCATCGTTCCGGTGTTGATTTA
58.996
45.455
0.00
0.00
36.10
1.40
39
40
1.810151
CCATCGTTCCGGTGTTGATTT
59.190
47.619
0.00
0.00
36.10
2.17
42
43
0.393448
TTCCATCGTTCCGGTGTTGA
59.607
50.000
0.00
0.00
36.10
3.18
59
60
4.304110
CAACATATGGCAGCCATTGATTC
58.696
43.478
32.20
0.00
42.23
2.52
97
138
1.520666
CTCGTCTTAATGCCGGGGT
59.479
57.895
2.18
0.00
0.00
4.95
139
180
7.428020
GCAGCCATTGATTGATTATTAGACAA
58.572
34.615
0.00
0.00
0.00
3.18
140
181
6.016024
GGCAGCCATTGATTGATTATTAGACA
60.016
38.462
6.55
0.00
0.00
3.41
141
182
6.385033
GGCAGCCATTGATTGATTATTAGAC
58.615
40.000
6.55
0.00
0.00
2.59
142
183
5.181811
CGGCAGCCATTGATTGATTATTAGA
59.818
40.000
13.30
0.00
0.00
2.10
143
184
5.181811
TCGGCAGCCATTGATTGATTATTAG
59.818
40.000
13.30
0.00
0.00
1.73
144
185
5.069318
TCGGCAGCCATTGATTGATTATTA
58.931
37.500
13.30
0.00
0.00
0.98
145
186
3.890756
TCGGCAGCCATTGATTGATTATT
59.109
39.130
13.30
0.00
0.00
1.40
146
187
3.489355
TCGGCAGCCATTGATTGATTAT
58.511
40.909
13.30
0.00
0.00
1.28
147
188
2.929641
TCGGCAGCCATTGATTGATTA
58.070
42.857
13.30
0.00
0.00
1.75
148
189
1.766494
TCGGCAGCCATTGATTGATT
58.234
45.000
13.30
0.00
0.00
2.57
149
190
1.766494
TTCGGCAGCCATTGATTGAT
58.234
45.000
13.30
0.00
0.00
2.57
150
191
1.677576
GATTCGGCAGCCATTGATTGA
59.322
47.619
13.30
0.00
0.00
2.57
195
236
1.156736
CACCAGATGTTTCACGGGAC
58.843
55.000
0.00
0.00
0.00
4.46
332
389
4.809673
CCCTTCACCTGCACTTTATTTTC
58.190
43.478
0.00
0.00
0.00
2.29
333
390
3.006859
GCCCTTCACCTGCACTTTATTTT
59.993
43.478
0.00
0.00
0.00
1.82
544
616
0.596600
AAGAGAAAGCGCGACGTGAA
60.597
50.000
12.10
0.00
0.00
3.18
561
633
2.170985
CGCTCGCACCAAACGAAG
59.829
61.111
0.00
0.00
39.39
3.79
615
687
3.245315
CGCTACAGGTACGCACGC
61.245
66.667
0.00
0.00
0.00
5.34
621
693
2.499685
CCAGGCCGCTACAGGTAC
59.500
66.667
0.00
0.00
0.00
3.34
624
696
4.845580
CAGCCAGGCCGCTACAGG
62.846
72.222
8.22
0.00
36.82
4.00
764
842
2.818132
GATCGAGCAGTGGGGAGG
59.182
66.667
0.00
0.00
0.00
4.30
878
964
2.986979
TGCTCTGTACGCCGTGGA
60.987
61.111
0.00
0.00
0.00
4.02
894
980
2.960957
CTACTGCCGATCCTGCCGTG
62.961
65.000
8.58
0.00
0.00
4.94
912
998
1.293498
CGCCTACCAGTCTGCAACT
59.707
57.895
0.00
0.00
39.44
3.16
913
999
2.391389
GCGCCTACCAGTCTGCAAC
61.391
63.158
0.00
0.00
0.00
4.17
914
1000
2.047274
GCGCCTACCAGTCTGCAA
60.047
61.111
0.00
0.00
0.00
4.08
915
1001
4.435436
CGCGCCTACCAGTCTGCA
62.435
66.667
0.00
0.00
0.00
4.41
938
1024
0.392998
AAGCCAACATAGCCACCTCG
60.393
55.000
0.00
0.00
0.00
4.63
939
1025
1.098050
CAAGCCAACATAGCCACCTC
58.902
55.000
0.00
0.00
0.00
3.85
940
1026
0.323725
CCAAGCCAACATAGCCACCT
60.324
55.000
0.00
0.00
0.00
4.00
1089
1197
3.844090
GTGGAGGCGGAGGAGAGC
61.844
72.222
0.00
0.00
0.00
4.09
1110
1218
0.325110
TGAGGAGCCAGAAGAGGAGG
60.325
60.000
0.00
0.00
0.00
4.30
1236
1352
1.861575
GAGCGATCGGGAATTCAGTTC
59.138
52.381
18.30
4.77
36.04
3.01
1237
1353
1.802880
CGAGCGATCGGGAATTCAGTT
60.803
52.381
16.65
0.00
0.00
3.16
1238
1354
0.249073
CGAGCGATCGGGAATTCAGT
60.249
55.000
16.65
0.00
0.00
3.41
1239
1355
1.552348
GCGAGCGATCGGGAATTCAG
61.552
60.000
25.73
0.65
0.00
3.02
1240
1356
1.591594
GCGAGCGATCGGGAATTCA
60.592
57.895
25.73
0.00
0.00
2.57
1285
1405
2.253414
GAAACCCGCCAATCAGTCGC
62.253
60.000
0.00
0.00
0.00
5.19
1307
1432
1.532437
CCCCTAACGACAACGAAAACC
59.468
52.381
0.00
0.00
42.66
3.27
1313
1438
1.804326
CTCGCCCCTAACGACAACG
60.804
63.158
0.00
0.00
45.75
4.10
1320
1445
0.178941
TCCCTATCCTCGCCCCTAAC
60.179
60.000
0.00
0.00
0.00
2.34
1322
1447
0.774888
TCTCCCTATCCTCGCCCCTA
60.775
60.000
0.00
0.00
0.00
3.53
1336
1461
2.428085
GGCCTCTTCTCCGTCTCCC
61.428
68.421
0.00
0.00
0.00
4.30
1409
1534
0.898789
TCTGGAGAACCCTGTCGTCC
60.899
60.000
0.00
0.00
35.57
4.79
1482
1607
3.195698
GCTTTCGTAGGCGGCCAG
61.196
66.667
23.09
12.16
38.89
4.85
1769
1906
4.521062
GCGCTCTGCCCATCGTCT
62.521
66.667
0.00
0.00
37.76
4.18
1946
2089
1.877367
GTCGACCACTCTTCGCTCT
59.123
57.895
3.51
0.00
36.40
4.09
1949
2092
3.173240
GCGTCGACCACTCTTCGC
61.173
66.667
10.58
3.23
36.40
4.70
1952
2095
2.254651
GACGCGTCGACCACTCTT
59.745
61.111
25.19
0.00
0.00
2.85
2363
2506
2.358247
GACACCGTGGTTGCCGAT
60.358
61.111
3.03
0.00
0.00
4.18
2621
2770
0.672401
TGTTCTCACCGGCGAATTCC
60.672
55.000
9.30
0.00
0.00
3.01
2654
2803
7.223971
TCGTTTATGGTTATGATTTCCTTCTCG
59.776
37.037
0.00
0.00
0.00
4.04
2666
2815
6.520790
CGCATGAATGATCGTTTATGGTTATG
59.479
38.462
25.44
8.64
0.00
1.90
2669
2818
4.574421
TCGCATGAATGATCGTTTATGGTT
59.426
37.500
25.44
0.00
0.00
3.67
2689
2838
0.248784
GGCATCAGAAATGGCTTCGC
60.249
55.000
4.51
0.00
40.85
4.70
2720
2869
2.526432
TCTCTGTCAGTGGTTACCTCC
58.474
52.381
2.07
0.00
0.00
4.30
2777
2926
3.005539
GGCTGTGGGCTCCTCTCA
61.006
66.667
0.00
0.00
41.46
3.27
2883
3035
2.162681
TCTCTTGTCATCAGCGTCTGA
58.837
47.619
11.12
11.12
44.99
3.27
2889
3041
1.339438
TGGGCTTCTCTTGTCATCAGC
60.339
52.381
0.00
0.00
0.00
4.26
2951
3103
8.158169
TCCAAACATCAGATATAAGTTCATGC
57.842
34.615
0.00
0.00
0.00
4.06
3005
3157
3.350219
TCATAAGCAACCTCACCTTCC
57.650
47.619
0.00
0.00
0.00
3.46
3044
3196
2.930682
GACGAATTCTTTCTCGGAAGGG
59.069
50.000
3.52
0.00
39.38
3.95
3050
3202
3.245797
TCTGCTGACGAATTCTTTCTCG
58.754
45.455
3.52
0.00
40.87
4.04
3092
3244
2.012673
GCTTTGTGATCATCGGAGCTT
58.987
47.619
0.00
0.00
0.00
3.74
3152
3304
0.314302
CTGGGATGGTACGATCGTCC
59.686
60.000
26.48
23.79
39.08
4.79
3166
3318
1.228988
TGCTCTGAGTGCTCTGGGA
60.229
57.895
8.06
1.48
31.54
4.37
3251
3403
1.336125
GCACCAGCATGCTTATCTTCC
59.664
52.381
19.98
0.00
42.62
3.46
3267
3419
1.236628
GCTGGATGATCATCTGCACC
58.763
55.000
30.55
20.02
37.92
5.01
3314
3466
0.323957
ACTTGGCCTTCTCGGTAACC
59.676
55.000
3.32
0.00
34.25
2.85
3348
3500
1.681166
CCACTTGCCTTCCTGATCCTG
60.681
57.143
0.00
0.00
0.00
3.86
3354
3506
0.401738
TCCTTCCACTTGCCTTCCTG
59.598
55.000
0.00
0.00
0.00
3.86
3515
3667
1.064825
ACGGTTTGAGGTCCTCCATT
58.935
50.000
16.60
0.00
35.89
3.16
3533
3685
1.519455
CTTGGCGTCGATCCTCCAC
60.519
63.158
0.00
0.00
0.00
4.02
3663
3815
3.679824
ACTGGTAGTGTGAAGTTAGGC
57.320
47.619
0.00
0.00
0.00
3.93
3676
3828
4.701171
AGAGAACTCGGAGTAAACTGGTAG
59.299
45.833
11.71
0.00
34.09
3.18
3691
3843
6.488344
AGGAAAAGTGGAATCAAAGAGAACTC
59.512
38.462
0.00
0.00
0.00
3.01
3779
3931
2.430332
CAGAGAAAGGTGGGTTTTGCAA
59.570
45.455
0.00
0.00
0.00
4.08
3780
3932
2.031120
CAGAGAAAGGTGGGTTTTGCA
58.969
47.619
0.00
0.00
0.00
4.08
3781
3933
2.306847
TCAGAGAAAGGTGGGTTTTGC
58.693
47.619
0.00
0.00
0.00
3.68
3782
3934
3.068165
GGTTCAGAGAAAGGTGGGTTTTG
59.932
47.826
0.00
0.00
0.00
2.44
3783
3935
3.296854
GGTTCAGAGAAAGGTGGGTTTT
58.703
45.455
0.00
0.00
0.00
2.43
3784
3936
2.748465
CGGTTCAGAGAAAGGTGGGTTT
60.748
50.000
0.00
0.00
0.00
3.27
3785
3937
1.202770
CGGTTCAGAGAAAGGTGGGTT
60.203
52.381
0.00
0.00
0.00
4.11
3803
3955
3.469008
TGGAGCATAAAGTACCATCGG
57.531
47.619
0.00
0.00
0.00
4.18
3959
4226
5.324784
TCATTATATTCCCCTCGACGATG
57.675
43.478
0.00
0.00
0.00
3.84
3960
4227
5.656859
TCATCATTATATTCCCCTCGACGAT
59.343
40.000
0.00
0.00
0.00
3.73
3963
4230
9.838339
AATATTCATCATTATATTCCCCTCGAC
57.162
33.333
0.00
0.00
0.00
4.20
4000
4267
4.020128
AGCGTTTCCTCATTAGAAGGAAGT
60.020
41.667
4.90
0.00
41.96
3.01
4036
4303
7.930865
TGCCAGTTTAAAATTCTAAGCATGTTT
59.069
29.630
0.00
0.00
0.00
2.83
4088
4355
2.031120
CCCCTTTTGCACTCAACTTCA
58.969
47.619
0.00
0.00
30.75
3.02
4098
4365
3.838565
TGAATTAGTGACCCCTTTTGCA
58.161
40.909
0.00
0.00
0.00
4.08
4251
4725
2.100916
CGGATTACGGGTTGAGTGATCT
59.899
50.000
0.00
0.00
39.42
2.75
4258
4732
2.813172
GGTTTTTCGGATTACGGGTTGA
59.187
45.455
0.00
0.00
44.45
3.18
4265
4739
8.604890
CAAGAGAAGATAGGTTTTTCGGATTAC
58.395
37.037
0.00
0.00
0.00
1.89
4320
4794
5.981915
CCATAGCTTTTACCGGTAGTACTTC
59.018
44.000
15.20
0.00
0.00
3.01
4361
4835
8.299570
GTCATTAAATGTGGAGATCAGTTTGTT
58.700
33.333
0.00
0.00
0.00
2.83
4362
4836
7.094205
GGTCATTAAATGTGGAGATCAGTTTGT
60.094
37.037
0.00
0.00
0.00
2.83
4363
4837
7.253422
GGTCATTAAATGTGGAGATCAGTTTG
58.747
38.462
0.00
0.00
0.00
2.93
4364
4838
6.378280
GGGTCATTAAATGTGGAGATCAGTTT
59.622
38.462
0.00
0.00
0.00
2.66
4454
4929
4.037923
GCATTCTTCCCAGAGTTGAACAAA
59.962
41.667
0.00
0.00
0.00
2.83
4485
4960
5.513267
CCTGGCTATAAAGGAATGGACTACC
60.513
48.000
0.00
0.00
35.40
3.18
4504
4979
6.762187
GTCCTTTCTTTAACTAGTATCCTGGC
59.238
42.308
0.00
0.00
0.00
4.85
4505
4980
7.982354
CAGTCCTTTCTTTAACTAGTATCCTGG
59.018
40.741
0.00
0.00
0.00
4.45
4506
4981
7.492994
GCAGTCCTTTCTTTAACTAGTATCCTG
59.507
40.741
0.00
0.00
0.00
3.86
4507
4982
7.180408
TGCAGTCCTTTCTTTAACTAGTATCCT
59.820
37.037
0.00
0.00
0.00
3.24
4678
5223
1.664659
CTGAGCTGGAGAAAATCTGCG
59.335
52.381
0.00
0.00
37.69
5.18
4714
5259
1.188219
AGGCCTTCAGAGAGTTCGCA
61.188
55.000
0.00
0.00
0.00
5.10
4741
5286
0.390860
ACAGGATGGATAGCGCTGTC
59.609
55.000
24.41
24.41
43.62
3.51
4744
5289
1.662608
CGACAGGATGGATAGCGCT
59.337
57.895
17.26
17.26
43.62
5.92
4918
5463
1.831736
CTGTGGTAAGGGTCGGATTCT
59.168
52.381
0.00
0.00
0.00
2.40
4960
5505
2.038295
CTGAAACTGCTGGAACTCTCCT
59.962
50.000
0.00
0.00
42.94
3.69
5111
5656
0.464452
ATCGCACCCTTGGCTACTAC
59.536
55.000
0.00
0.00
0.00
2.73
5115
5660
1.344438
CAGATATCGCACCCTTGGCTA
59.656
52.381
0.00
0.00
0.00
3.93
5122
5667
1.613925
TCAGTAGCAGATATCGCACCC
59.386
52.381
17.63
7.98
0.00
4.61
5131
5676
7.928307
TTTCAAGCTAAATTCAGTAGCAGAT
57.072
32.000
9.67
0.00
45.33
2.90
5156
5701
3.006967
ACTTCACGTTAGACCTCAGCATT
59.993
43.478
1.64
0.00
0.00
3.56
5159
5704
2.726832
ACTTCACGTTAGACCTCAGC
57.273
50.000
1.64
0.00
0.00
4.26
5160
5705
3.741344
CCAAACTTCACGTTAGACCTCAG
59.259
47.826
1.64
0.00
33.90
3.35
5165
5710
4.024387
TGCAATCCAAACTTCACGTTAGAC
60.024
41.667
1.64
0.00
33.90
2.59
5263
5808
0.249657
GCATCGACTCCTCCATGACC
60.250
60.000
0.00
0.00
0.00
4.02
5424
5969
6.713903
TGTGTAGTACTGTGTAGAGTAAAGCT
59.286
38.462
5.39
0.00
30.16
3.74
5433
5978
2.159421
CCGGCTGTGTAGTACTGTGTAG
60.159
54.545
5.39
0.34
0.00
2.74
5588
6156
0.178929
AAGAGGTTCTGGTCCGACCT
60.179
55.000
18.54
10.32
46.11
3.85
5784
6352
7.720957
TGAGGACAAAAGAAAAATCAGAGATGA
59.279
33.333
0.00
0.00
0.00
2.92
5798
6366
5.222027
TGGATTACATGGTGAGGACAAAAGA
60.222
40.000
0.00
0.00
0.00
2.52
5799
6367
5.009631
TGGATTACATGGTGAGGACAAAAG
58.990
41.667
0.00
0.00
0.00
2.27
5801
6369
4.331968
GTGGATTACATGGTGAGGACAAA
58.668
43.478
0.00
0.00
0.00
2.83
5803
6371
2.093711
CGTGGATTACATGGTGAGGACA
60.094
50.000
0.00
0.00
32.27
4.02
5804
6372
2.550978
CGTGGATTACATGGTGAGGAC
58.449
52.381
0.00
0.00
32.27
3.85
5894
6488
3.735237
ATCAGGTTACAGTCATAGGCG
57.265
47.619
0.00
0.00
0.00
5.52
5951
6545
8.388853
GGAGCTGCAAGTAATAAGTAAACTTAC
58.611
37.037
0.00
0.00
37.51
2.34
5983
6577
4.985538
TGTACTGTTTCCTAGCTAGCTC
57.014
45.455
23.26
6.18
0.00
4.09
6086
6681
9.286946
CATTACAACTTGTGCTAGTAGTAGTAC
57.713
37.037
16.47
16.47
41.10
2.73
6089
6684
8.981724
TTCATTACAACTTGTGCTAGTAGTAG
57.018
34.615
4.57
0.00
0.00
2.57
6129
6724
4.142609
ACGGCAATCTGTACATTCTGAT
57.857
40.909
0.00
0.00
0.00
2.90
6182
6777
0.890542
ATCGAAGTGGCAAGCAAGCA
60.891
50.000
0.00
0.00
35.83
3.91
6183
6778
0.179179
GATCGAAGTGGCAAGCAAGC
60.179
55.000
0.00
0.00
0.00
4.01
6184
6779
1.159285
TGATCGAAGTGGCAAGCAAG
58.841
50.000
0.00
0.00
0.00
4.01
6364
6973
3.775261
TGGTACTTGGGTTGTTAGGAC
57.225
47.619
0.00
0.00
0.00
3.85
6452
7061
6.143919
GCAGAAAGTGAAAAATAAAAGGACGG
59.856
38.462
0.00
0.00
0.00
4.79
6457
7066
8.862550
ACAGAGCAGAAAGTGAAAAATAAAAG
57.137
30.769
0.00
0.00
0.00
2.27
6476
7085
2.698855
ATCACCACACCATACAGAGC
57.301
50.000
0.00
0.00
0.00
4.09
6478
7087
3.587061
AGGAAATCACCACACCATACAGA
59.413
43.478
0.00
0.00
0.00
3.41
6481
7090
2.936498
CGAGGAAATCACCACACCATAC
59.064
50.000
0.00
0.00
0.00
2.39
6483
7092
1.950484
GCGAGGAAATCACCACACCAT
60.950
52.381
0.00
0.00
0.00
3.55
6485
7094
0.321653
AGCGAGGAAATCACCACACC
60.322
55.000
0.00
0.00
0.00
4.16
6507
7116
4.984161
ACACTCGAATTTGCCTTTTGAATG
59.016
37.500
0.00
0.00
0.00
2.67
6518
7127
3.044986
CCACAGCAAACACTCGAATTTG
58.955
45.455
10.59
10.59
38.57
2.32
6571
7234
1.578583
ATGTACGTATTTGGCCGCTC
58.421
50.000
0.00
0.00
0.00
5.03
6575
7238
3.800531
ACCTGTATGTACGTATTTGGCC
58.199
45.455
0.00
0.00
0.00
5.36
6625
7288
3.638592
AACCCATTCGGCCCCTTCG
62.639
63.158
0.00
0.00
33.26
3.79
6628
7291
4.060667
CCAACCCATTCGGCCCCT
62.061
66.667
0.00
0.00
33.26
4.79
6671
7334
2.683933
TCCCTGGGGCTCGTTCTC
60.684
66.667
14.00
0.00
34.68
2.87
6673
7336
4.475135
GCTCCCTGGGGCTCGTTC
62.475
72.222
14.00
0.00
34.68
3.95
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.