Multiple sequence alignment - TraesCS5D01G234400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G234400 chr5D 100.000 2716 0 0 1 2716 341580336 341577621 0.000000e+00 5016.0
1 TraesCS5D01G234400 chr5B 83.967 736 61 27 676 1379 401074468 401073758 0.000000e+00 652.0
2 TraesCS5D01G234400 chr5B 83.069 756 87 20 1961 2702 401073279 401072551 0.000000e+00 649.0
3 TraesCS5D01G234400 chr5B 95.078 386 8 5 1505 1889 401073679 401073304 5.010000e-167 597.0
4 TraesCS5D01G234400 chr5B 94.792 384 19 1 19 401 401074884 401074501 5.010000e-167 597.0
5 TraesCS5D01G234400 chr5B 86.916 214 22 4 411 623 564185863 564185655 4.520000e-58 235.0
6 TraesCS5D01G234400 chr5B 100.000 35 0 0 628 662 401074502 401074468 6.280000e-07 65.8
7 TraesCS5D01G234400 chr5A 82.265 733 61 33 681 1379 442724482 442723785 1.090000e-158 569.0
8 TraesCS5D01G234400 chr5A 90.909 286 21 3 21 301 442724844 442724559 1.970000e-101 379.0
9 TraesCS5D01G234400 chr5A 90.511 274 19 5 1504 1770 442723701 442723428 3.330000e-94 355.0
10 TraesCS5D01G234400 chr5A 87.500 264 26 6 2069 2330 442723199 442722941 5.690000e-77 298.0
11 TraesCS5D01G234400 chr5A 91.327 196 11 4 1824 2019 442723404 442723215 2.070000e-66 263.0
12 TraesCS5D01G234400 chr5A 100.000 51 0 0 631 681 442724516 442724466 8.010000e-16 95.3
13 TraesCS5D01G234400 chr5A 100.000 30 0 0 1466 1495 442723759 442723730 3.780000e-04 56.5
14 TraesCS5D01G234400 chr6A 92.169 166 11 2 410 573 1413930 1413765 1.630000e-57 233.0
15 TraesCS5D01G234400 chr6A 90.798 163 15 0 411 573 13736069 13735907 4.550000e-53 219.0
16 TraesCS5D01G234400 chr2D 86.207 232 12 8 415 627 492075401 492075171 1.630000e-57 233.0
17 TraesCS5D01G234400 chr1A 85.586 222 29 3 402 622 14440281 14440500 2.100000e-56 230.0
18 TraesCS5D01G234400 chr1A 83.105 219 32 3 411 627 586743980 586743765 7.670000e-46 195.0
19 TraesCS5D01G234400 chr3A 91.411 163 14 0 411 573 681554517 681554355 9.790000e-55 224.0
20 TraesCS5D01G234400 chr3A 84.689 209 22 7 423 627 684643440 684643642 1.650000e-47 200.0
21 TraesCS5D01G234400 chr4A 84.977 213 24 6 412 622 739846050 739846256 2.740000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G234400 chr5D 341577621 341580336 2715 True 5016.000000 5016 100.000000 1 2716 1 chr5D.!!$R1 2715
1 TraesCS5D01G234400 chr5B 401072551 401074884 2333 True 512.160000 652 91.381200 19 2702 5 chr5B.!!$R2 2683
2 TraesCS5D01G234400 chr5A 442722941 442724844 1903 True 287.971429 569 91.787429 21 2330 7 chr5A.!!$R1 2309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 675 0.038744 ACCATGCAAGTGGGGAAGAG 59.961 55.0 11.02 0.0 43.77 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2157 0.105224 ACAACCAACACGACCATCGA 59.895 50.0 5.04 0.0 43.74 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.435590 TTGCCAAGTCAGTGCTGC 58.564 55.556 0.00 0.00 0.00 5.25
31 32 4.020218 TCAGTGCTGCTACAAATTCTACCT 60.020 41.667 0.00 0.00 0.00 3.08
76 77 2.744709 GCTAGCGTTTCCGGGCAA 60.745 61.111 0.00 0.00 33.68 4.52
93 94 1.841556 AAGCTCCCCACGTGAAGGA 60.842 57.895 19.30 20.67 0.00 3.36
134 135 0.780002 CGTGTAGTGTAACGTGCACC 59.220 55.000 12.15 0.00 45.86 5.01
185 186 3.434319 CACCGGCATTTCAGCGCT 61.434 61.111 2.64 2.64 34.64 5.92
262 263 1.487482 CGATCTGAGGCGCGAAAATA 58.513 50.000 12.10 0.00 0.00 1.40
268 274 4.049186 TCTGAGGCGCGAAAATAATAGAC 58.951 43.478 12.10 0.00 0.00 2.59
292 298 3.319198 GGGGTCAGAGAACGCCCA 61.319 66.667 0.00 0.00 44.32 5.36
309 315 3.083997 AGATCTGTGCCCGGGACC 61.084 66.667 29.31 14.48 0.00 4.46
399 407 6.372381 GCACTACTCCTAGTCTAGCCTTATAC 59.628 46.154 0.86 0.00 30.03 1.47
400 408 7.682628 CACTACTCCTAGTCTAGCCTTATACT 58.317 42.308 0.86 0.00 30.03 2.12
401 409 8.814931 CACTACTCCTAGTCTAGCCTTATACTA 58.185 40.741 0.86 0.00 30.03 1.82
402 410 8.815912 ACTACTCCTAGTCTAGCCTTATACTAC 58.184 40.741 0.86 0.00 0.00 2.73
403 411 7.876978 ACTCCTAGTCTAGCCTTATACTACT 57.123 40.000 0.86 0.00 0.00 2.57
404 412 7.910584 ACTCCTAGTCTAGCCTTATACTACTC 58.089 42.308 0.86 0.00 0.00 2.59
405 413 7.736234 ACTCCTAGTCTAGCCTTATACTACTCT 59.264 40.741 0.86 0.00 0.00 3.24
406 414 7.909518 TCCTAGTCTAGCCTTATACTACTCTG 58.090 42.308 0.86 0.00 0.00 3.35
407 415 7.733955 TCCTAGTCTAGCCTTATACTACTCTGA 59.266 40.741 0.86 0.00 0.00 3.27
408 416 8.545472 CCTAGTCTAGCCTTATACTACTCTGAT 58.455 40.741 0.86 0.00 0.00 2.90
409 417 9.595823 CTAGTCTAGCCTTATACTACTCTGATC 57.404 40.741 0.00 0.00 0.00 2.92
410 418 7.399634 AGTCTAGCCTTATACTACTCTGATCC 58.600 42.308 0.00 0.00 0.00 3.36
411 419 7.238933 AGTCTAGCCTTATACTACTCTGATCCT 59.761 40.741 0.00 0.00 0.00 3.24
412 420 7.335924 GTCTAGCCTTATACTACTCTGATCCTG 59.664 44.444 0.00 0.00 0.00 3.86
413 421 5.959512 AGCCTTATACTACTCTGATCCTGT 58.040 41.667 0.00 0.00 0.00 4.00
414 422 5.772672 AGCCTTATACTACTCTGATCCTGTG 59.227 44.000 0.00 0.00 0.00 3.66
415 423 5.536916 GCCTTATACTACTCTGATCCTGTGT 59.463 44.000 0.00 0.00 0.00 3.72
416 424 6.041069 GCCTTATACTACTCTGATCCTGTGTT 59.959 42.308 0.00 0.00 0.00 3.32
417 425 7.418025 GCCTTATACTACTCTGATCCTGTGTTT 60.418 40.741 0.00 0.00 0.00 2.83
418 426 8.478877 CCTTATACTACTCTGATCCTGTGTTTT 58.521 37.037 0.00 0.00 0.00 2.43
424 432 9.574516 ACTACTCTGATCCTGTGTTTTAAATTT 57.425 29.630 0.00 0.00 0.00 1.82
426 434 7.584987 ACTCTGATCCTGTGTTTTAAATTTCG 58.415 34.615 0.00 0.00 0.00 3.46
427 435 6.908825 TCTGATCCTGTGTTTTAAATTTCGG 58.091 36.000 0.00 0.00 0.00 4.30
428 436 5.465935 TGATCCTGTGTTTTAAATTTCGGC 58.534 37.500 0.00 0.00 0.00 5.54
429 437 4.245845 TCCTGTGTTTTAAATTTCGGCC 57.754 40.909 0.00 0.00 0.00 6.13
430 438 2.983803 CCTGTGTTTTAAATTTCGGCCG 59.016 45.455 22.12 22.12 0.00 6.13
431 439 3.304794 CCTGTGTTTTAAATTTCGGCCGA 60.305 43.478 27.28 27.28 0.00 5.54
432 440 3.891324 TGTGTTTTAAATTTCGGCCGAG 58.109 40.909 29.20 0.00 0.00 4.63
433 441 3.564644 TGTGTTTTAAATTTCGGCCGAGA 59.435 39.130 29.20 25.52 0.00 4.04
434 442 4.036498 TGTGTTTTAAATTTCGGCCGAGAA 59.964 37.500 29.20 23.72 0.00 2.87
435 443 4.977347 GTGTTTTAAATTTCGGCCGAGAAA 59.023 37.500 29.20 21.34 43.28 2.52
436 444 5.459434 GTGTTTTAAATTTCGGCCGAGAAAA 59.541 36.000 29.20 23.59 42.52 2.29
437 445 6.019720 GTGTTTTAAATTTCGGCCGAGAAAAA 60.020 34.615 29.20 22.38 42.52 1.94
438 446 6.019720 TGTTTTAAATTTCGGCCGAGAAAAAC 60.020 34.615 30.89 30.89 42.52 2.43
439 447 2.325509 AATTTCGGCCGAGAAAAACG 57.674 45.000 29.20 0.00 42.52 3.60
448 456 1.878373 CGAGAAAAACGGATTTCGGC 58.122 50.000 8.84 5.69 42.73 5.54
449 457 1.465187 CGAGAAAAACGGATTTCGGCC 60.465 52.381 0.00 0.00 42.73 6.13
457 465 3.526825 GGATTTCGGCCGAATTTCG 57.473 52.632 38.89 11.81 40.07 3.46
467 475 1.934463 CGAATTTCGGCCATCTCGG 59.066 57.895 10.95 0.00 36.00 4.63
485 493 2.934083 GCCTGGGGCGAAATCTATC 58.066 57.895 0.00 0.00 39.62 2.08
486 494 0.606673 GCCTGGGGCGAAATCTATCC 60.607 60.000 0.00 0.00 39.62 2.59
487 495 1.059913 CCTGGGGCGAAATCTATCCT 58.940 55.000 0.00 0.00 0.00 3.24
488 496 1.421646 CCTGGGGCGAAATCTATCCTT 59.578 52.381 0.00 0.00 0.00 3.36
489 497 2.498167 CTGGGGCGAAATCTATCCTTG 58.502 52.381 0.00 0.00 0.00 3.61
490 498 1.142870 TGGGGCGAAATCTATCCTTGG 59.857 52.381 0.00 0.00 0.00 3.61
491 499 1.239347 GGGCGAAATCTATCCTTGGC 58.761 55.000 0.00 0.00 0.00 4.52
492 500 1.239347 GGCGAAATCTATCCTTGGCC 58.761 55.000 0.00 0.00 38.91 5.36
493 501 0.868406 GCGAAATCTATCCTTGGCCG 59.132 55.000 0.00 0.00 0.00 6.13
494 502 1.540363 GCGAAATCTATCCTTGGCCGA 60.540 52.381 0.00 0.00 0.00 5.54
495 503 2.833794 CGAAATCTATCCTTGGCCGAA 58.166 47.619 0.00 0.00 0.00 4.30
496 504 3.202906 CGAAATCTATCCTTGGCCGAAA 58.797 45.455 0.00 0.00 0.00 3.46
497 505 3.815401 CGAAATCTATCCTTGGCCGAAAT 59.185 43.478 0.00 0.00 0.00 2.17
498 506 4.275936 CGAAATCTATCCTTGGCCGAAATT 59.724 41.667 0.00 0.00 0.00 1.82
499 507 5.520376 AAATCTATCCTTGGCCGAAATTG 57.480 39.130 0.00 0.00 0.00 2.32
500 508 2.930950 TCTATCCTTGGCCGAAATTGG 58.069 47.619 0.00 0.00 0.00 3.16
501 509 2.241176 TCTATCCTTGGCCGAAATTGGT 59.759 45.455 0.00 0.00 0.00 3.67
502 510 1.474330 ATCCTTGGCCGAAATTGGTC 58.526 50.000 0.00 0.00 0.00 4.02
503 511 0.111446 TCCTTGGCCGAAATTGGTCA 59.889 50.000 0.00 0.00 43.22 4.02
509 517 3.397482 TGGCCGAAATTGGTCAAATTTG 58.603 40.909 12.15 12.15 46.29 2.32
510 518 3.070159 TGGCCGAAATTGGTCAAATTTGA 59.930 39.130 16.91 16.91 46.29 2.69
543 551 9.820725 TTGATCAAAATTGAGTCAAATTTCAGT 57.179 25.926 14.63 5.48 41.08 3.41
544 552 9.467258 TGATCAAAATTGAGTCAAATTTCAGTC 57.533 29.630 14.63 12.81 41.08 3.51
545 553 9.467258 GATCAAAATTGAGTCAAATTTCAGTCA 57.533 29.630 14.63 0.00 41.08 3.41
546 554 9.820725 ATCAAAATTGAGTCAAATTTCAGTCAA 57.179 25.926 13.79 13.79 41.08 3.18
547 555 9.650539 TCAAAATTGAGTCAAATTTCAGTCAAA 57.349 25.926 15.15 0.00 38.49 2.69
552 560 8.861033 TTGAGTCAAATTTCAGTCAAATTCTG 57.139 30.769 9.61 0.00 42.86 3.02
553 561 7.428020 TGAGTCAAATTTCAGTCAAATTCTGG 58.572 34.615 0.00 0.00 42.86 3.86
554 562 7.068593 TGAGTCAAATTTCAGTCAAATTCTGGT 59.931 33.333 0.00 0.00 42.86 4.00
555 563 7.428826 AGTCAAATTTCAGTCAAATTCTGGTC 58.571 34.615 0.00 0.00 42.86 4.02
556 564 7.068593 AGTCAAATTTCAGTCAAATTCTGGTCA 59.931 33.333 0.00 0.00 42.86 4.02
557 565 7.706179 GTCAAATTTCAGTCAAATTCTGGTCAA 59.294 33.333 0.00 0.00 42.86 3.18
558 566 8.256605 TCAAATTTCAGTCAAATTCTGGTCAAA 58.743 29.630 0.00 0.00 42.86 2.69
559 567 9.048446 CAAATTTCAGTCAAATTCTGGTCAAAT 57.952 29.630 0.00 0.00 42.86 2.32
560 568 9.617523 AAATTTCAGTCAAATTCTGGTCAAATT 57.382 25.926 0.00 0.00 42.86 1.82
561 569 9.617523 AATTTCAGTCAAATTCTGGTCAAATTT 57.382 25.926 0.00 0.00 40.12 1.82
562 570 9.617523 ATTTCAGTCAAATTCTGGTCAAATTTT 57.382 25.926 0.00 0.00 34.84 1.82
563 571 8.422973 TTCAGTCAAATTCTGGTCAAATTTTG 57.577 30.769 2.59 2.59 34.84 2.44
564 572 6.985645 TCAGTCAAATTCTGGTCAAATTTTGG 59.014 34.615 9.18 0.00 34.84 3.28
565 573 5.759763 AGTCAAATTCTGGTCAAATTTTGGC 59.240 36.000 9.18 7.23 34.84 4.52
573 581 4.661993 GGTCAAATTTTGGCCGAAATTC 57.338 40.909 34.05 24.36 46.80 2.17
574 582 4.061596 GGTCAAATTTTGGCCGAAATTCA 58.938 39.130 34.05 24.03 46.80 2.57
575 583 4.152223 GGTCAAATTTTGGCCGAAATTCAG 59.848 41.667 34.05 28.76 46.80 3.02
576 584 3.745458 TCAAATTTTGGCCGAAATTCAGC 59.255 39.130 34.05 0.00 38.04 4.26
581 589 2.799176 GGCCGAAATTCAGCCATCT 58.201 52.632 14.87 0.00 46.34 2.90
582 590 0.665298 GGCCGAAATTCAGCCATCTC 59.335 55.000 14.87 0.00 46.34 2.75
583 591 0.305922 GCCGAAATTCAGCCATCTCG 59.694 55.000 0.00 0.00 0.00 4.04
584 592 0.940126 CCGAAATTCAGCCATCTCGG 59.060 55.000 0.00 0.00 39.79 4.63
622 630 9.853555 AAAAATTCTCAAACCCAAAATCAAAAC 57.146 25.926 0.00 0.00 0.00 2.43
623 631 8.572855 AAATTCTCAAACCCAAAATCAAAACA 57.427 26.923 0.00 0.00 0.00 2.83
624 632 6.976636 TTCTCAAACCCAAAATCAAAACAC 57.023 33.333 0.00 0.00 0.00 3.32
625 633 6.042638 TCTCAAACCCAAAATCAAAACACA 57.957 33.333 0.00 0.00 0.00 3.72
626 634 6.105333 TCTCAAACCCAAAATCAAAACACAG 58.895 36.000 0.00 0.00 0.00 3.66
664 672 4.517663 CACCATGCAAGTGGGGAA 57.482 55.556 11.02 0.00 45.94 3.97
665 673 2.269978 CACCATGCAAGTGGGGAAG 58.730 57.895 11.02 0.00 45.94 3.46
666 674 0.251297 CACCATGCAAGTGGGGAAGA 60.251 55.000 11.02 0.00 45.94 2.87
667 675 0.038744 ACCATGCAAGTGGGGAAGAG 59.961 55.000 11.02 0.00 43.77 2.85
668 676 0.329261 CCATGCAAGTGGGGAAGAGA 59.671 55.000 0.00 0.00 35.55 3.10
669 677 1.681166 CCATGCAAGTGGGGAAGAGAG 60.681 57.143 0.00 0.00 35.55 3.20
670 678 1.280133 CATGCAAGTGGGGAAGAGAGA 59.720 52.381 0.00 0.00 0.00 3.10
671 679 0.979665 TGCAAGTGGGGAAGAGAGAG 59.020 55.000 0.00 0.00 0.00 3.20
672 680 1.270907 GCAAGTGGGGAAGAGAGAGA 58.729 55.000 0.00 0.00 0.00 3.10
673 681 1.206849 GCAAGTGGGGAAGAGAGAGAG 59.793 57.143 0.00 0.00 0.00 3.20
674 682 2.813907 CAAGTGGGGAAGAGAGAGAGA 58.186 52.381 0.00 0.00 0.00 3.10
767 780 6.491403 AGGTTTAATAGATGGGATGAACATGC 59.509 38.462 0.00 0.00 0.00 4.06
831 844 1.406539 CATGTTGGGCTCTGCAATACC 59.593 52.381 0.00 0.00 0.00 2.73
833 846 1.340017 TGTTGGGCTCTGCAATACCTC 60.340 52.381 0.00 0.00 0.00 3.85
835 848 1.889573 GGGCTCTGCAATACCTCGC 60.890 63.158 0.00 0.00 0.00 5.03
933 974 3.618780 CTCACTCTGCCCAGCCCAC 62.619 68.421 0.00 0.00 0.00 4.61
954 995 1.667830 GCCGCTGCTTCACTACACA 60.668 57.895 0.00 0.00 33.53 3.72
955 996 1.901650 GCCGCTGCTTCACTACACAC 61.902 60.000 0.00 0.00 33.53 3.82
959 1000 1.512926 CTGCTTCACTACACACCACC 58.487 55.000 0.00 0.00 0.00 4.61
960 1001 0.833949 TGCTTCACTACACACCACCA 59.166 50.000 0.00 0.00 0.00 4.17
961 1002 1.226746 GCTTCACTACACACCACCAC 58.773 55.000 0.00 0.00 0.00 4.16
962 1003 1.202651 GCTTCACTACACACCACCACT 60.203 52.381 0.00 0.00 0.00 4.00
963 1004 2.745152 GCTTCACTACACACCACCACTT 60.745 50.000 0.00 0.00 0.00 3.16
964 1005 2.902705 TCACTACACACCACCACTTC 57.097 50.000 0.00 0.00 0.00 3.01
1014 1058 1.610086 CAAAATGGCCCTGGCTGGA 60.610 57.895 12.58 0.00 41.60 3.86
1086 1133 2.289945 GCACAAGGTGAGATCTCTGGTT 60.290 50.000 22.95 10.57 35.23 3.67
1087 1134 3.332919 CACAAGGTGAGATCTCTGGTTG 58.667 50.000 22.95 21.57 35.23 3.77
1089 1136 3.244353 ACAAGGTGAGATCTCTGGTTGTG 60.244 47.826 24.28 17.01 30.67 3.33
1090 1137 1.905215 AGGTGAGATCTCTGGTTGTGG 59.095 52.381 22.95 0.00 0.00 4.17
1091 1138 1.625818 GGTGAGATCTCTGGTTGTGGT 59.374 52.381 22.95 0.00 0.00 4.16
1094 1141 3.055530 GTGAGATCTCTGGTTGTGGTCAT 60.056 47.826 22.95 0.00 0.00 3.06
1098 1145 0.391661 CTCTGGTTGTGGTCATCCGG 60.392 60.000 0.00 0.00 39.75 5.14
1129 1180 0.607489 CACAAGGTGAGGGAAGCCAG 60.607 60.000 0.00 0.00 35.23 4.85
1131 1182 0.622665 CAAGGTGAGGGAAGCCAGAT 59.377 55.000 0.00 0.00 0.00 2.90
1134 1185 1.034292 GGTGAGGGAAGCCAGATTGC 61.034 60.000 0.00 0.00 0.00 3.56
1138 1189 1.821332 GGGAAGCCAGATTGCTCGG 60.821 63.158 0.00 0.00 41.80 4.63
1159 1213 2.167075 GCTTGCTTGGGATGCTTACATT 59.833 45.455 0.00 0.00 36.35 2.71
1192 1246 0.397941 TCAGGTGTTTGCCTCAGGAG 59.602 55.000 0.00 0.00 36.58 3.69
1196 1250 3.435186 GTTTGCCTCAGGAGCCGC 61.435 66.667 0.00 0.00 0.00 6.53
1203 1257 4.074526 TCAGGAGCCGCAGAGCAC 62.075 66.667 0.00 0.00 34.23 4.40
1233 1287 0.601558 TGTACCGAGTGAGCAAGGTC 59.398 55.000 0.00 0.00 38.12 3.85
1234 1288 0.108756 GTACCGAGTGAGCAAGGTCC 60.109 60.000 0.00 0.00 38.12 4.46
1235 1289 0.251653 TACCGAGTGAGCAAGGTCCT 60.252 55.000 0.00 0.00 38.12 3.85
1237 1291 0.895530 CCGAGTGAGCAAGGTCCTTA 59.104 55.000 3.08 0.00 0.00 2.69
1243 1297 3.589288 AGTGAGCAAGGTCCTTATTTCCT 59.411 43.478 3.08 0.00 0.00 3.36
1245 1299 3.054361 TGAGCAAGGTCCTTATTTCCTCC 60.054 47.826 3.08 0.00 0.00 4.30
1246 1300 3.193782 AGCAAGGTCCTTATTTCCTCCT 58.806 45.455 3.08 0.00 0.00 3.69
1247 1301 3.201045 AGCAAGGTCCTTATTTCCTCCTC 59.799 47.826 3.08 0.00 0.00 3.71
1250 1304 1.202663 GGTCCTTATTTCCTCCTCGCC 60.203 57.143 0.00 0.00 0.00 5.54
1253 1307 2.170607 TCCTTATTTCCTCCTCGCCTTG 59.829 50.000 0.00 0.00 0.00 3.61
1254 1308 1.943340 CTTATTTCCTCCTCGCCTTGC 59.057 52.381 0.00 0.00 0.00 4.01
1275 1329 5.953183 TGCGATGCACATTTTTAAAGAGAT 58.047 33.333 0.00 0.00 31.71 2.75
1281 1335 9.321590 GATGCACATTTTTAAAGAGATTTTTGC 57.678 29.630 0.00 0.00 0.00 3.68
1284 1338 7.290118 CACATTTTTAAAGAGATTTTTGCGGG 58.710 34.615 0.00 0.00 0.00 6.13
1301 1355 2.035961 GCGGGTAGATCTGTTGCTGATA 59.964 50.000 5.18 0.00 0.00 2.15
1302 1356 3.643763 CGGGTAGATCTGTTGCTGATAC 58.356 50.000 5.18 0.00 0.00 2.24
1303 1357 3.643763 GGGTAGATCTGTTGCTGATACG 58.356 50.000 5.18 0.00 0.00 3.06
1304 1358 3.068307 GGGTAGATCTGTTGCTGATACGT 59.932 47.826 5.18 0.00 0.00 3.57
1305 1359 4.277672 GGGTAGATCTGTTGCTGATACGTA 59.722 45.833 5.18 0.00 0.00 3.57
1306 1360 5.047943 GGGTAGATCTGTTGCTGATACGTAT 60.048 44.000 8.05 8.05 0.00 3.06
1359 1413 4.106925 CAGGGAGGACAGGGCAGC 62.107 72.222 0.00 0.00 0.00 5.25
1363 1417 3.791586 GAGGACAGGGCAGCCTCC 61.792 72.222 12.43 10.94 41.84 4.30
1366 1420 4.792804 GACAGGGCAGCCTCCAGC 62.793 72.222 12.43 0.00 44.25 4.85
1379 1433 1.471676 CCTCCAGCAATACCGTGAGTC 60.472 57.143 0.00 0.00 0.00 3.36
1381 1435 0.108804 CCAGCAATACCGTGAGTCGT 60.109 55.000 0.00 0.00 37.94 4.34
1383 1437 0.179171 AGCAATACCGTGAGTCGTCG 60.179 55.000 0.00 1.37 37.94 5.12
1385 1439 1.531912 CAATACCGTGAGTCGTCGTC 58.468 55.000 6.75 0.00 37.94 4.20
1386 1440 1.135888 CAATACCGTGAGTCGTCGTCA 60.136 52.381 6.75 0.00 37.94 4.35
1389 1443 2.126965 CGTGAGTCGTCGTCACCC 60.127 66.667 9.61 0.00 41.17 4.61
1390 1444 2.614446 CGTGAGTCGTCGTCACCCT 61.614 63.158 9.61 0.00 41.17 4.34
1391 1445 1.658673 GTGAGTCGTCGTCACCCTT 59.341 57.895 4.99 0.00 38.75 3.95
1394 1448 0.597072 GAGTCGTCGTCACCCTTTCT 59.403 55.000 0.00 0.00 0.00 2.52
1395 1449 1.808945 GAGTCGTCGTCACCCTTTCTA 59.191 52.381 0.00 0.00 0.00 2.10
1396 1450 2.422832 GAGTCGTCGTCACCCTTTCTAT 59.577 50.000 0.00 0.00 0.00 1.98
1398 1452 3.257624 AGTCGTCGTCACCCTTTCTATTT 59.742 43.478 0.00 0.00 0.00 1.40
1399 1453 3.611549 GTCGTCGTCACCCTTTCTATTTC 59.388 47.826 0.00 0.00 0.00 2.17
1400 1454 3.508793 TCGTCGTCACCCTTTCTATTTCT 59.491 43.478 0.00 0.00 0.00 2.52
1401 1455 4.701651 TCGTCGTCACCCTTTCTATTTCTA 59.298 41.667 0.00 0.00 0.00 2.10
1402 1456 4.797349 CGTCGTCACCCTTTCTATTTCTAC 59.203 45.833 0.00 0.00 0.00 2.59
1403 1457 5.620654 CGTCGTCACCCTTTCTATTTCTACA 60.621 44.000 0.00 0.00 0.00 2.74
1404 1458 6.161381 GTCGTCACCCTTTCTATTTCTACAA 58.839 40.000 0.00 0.00 0.00 2.41
1405 1459 6.647895 GTCGTCACCCTTTCTATTTCTACAAA 59.352 38.462 0.00 0.00 0.00 2.83
1406 1460 7.172019 GTCGTCACCCTTTCTATTTCTACAAAA 59.828 37.037 0.00 0.00 0.00 2.44
1407 1461 7.716123 TCGTCACCCTTTCTATTTCTACAAAAA 59.284 33.333 0.00 0.00 0.00 1.94
1408 1462 8.512138 CGTCACCCTTTCTATTTCTACAAAAAT 58.488 33.333 0.00 0.00 33.54 1.82
1409 1463 9.841880 GTCACCCTTTCTATTTCTACAAAAATC 57.158 33.333 0.00 0.00 31.50 2.17
1410 1464 9.807921 TCACCCTTTCTATTTCTACAAAAATCT 57.192 29.630 0.00 0.00 31.50 2.40
1419 1473 9.766277 CTATTTCTACAAAAATCTTGAGAGTGC 57.234 33.333 0.00 0.00 31.50 4.40
1420 1474 7.566760 TTTCTACAAAAATCTTGAGAGTGCA 57.433 32.000 0.00 0.00 0.00 4.57
1421 1475 7.750229 TTCTACAAAAATCTTGAGAGTGCAT 57.250 32.000 0.00 0.00 0.00 3.96
1422 1476 7.137490 TCTACAAAAATCTTGAGAGTGCATG 57.863 36.000 0.00 0.00 0.00 4.06
1423 1477 6.936335 TCTACAAAAATCTTGAGAGTGCATGA 59.064 34.615 0.00 0.00 0.00 3.07
1424 1478 6.395426 ACAAAAATCTTGAGAGTGCATGAA 57.605 33.333 0.00 0.00 0.00 2.57
1425 1479 6.808829 ACAAAAATCTTGAGAGTGCATGAAA 58.191 32.000 0.00 0.00 0.00 2.69
1426 1480 6.698766 ACAAAAATCTTGAGAGTGCATGAAAC 59.301 34.615 0.00 0.00 0.00 2.78
1427 1481 5.382618 AAATCTTGAGAGTGCATGAAACC 57.617 39.130 0.00 0.00 0.00 3.27
1428 1482 2.416747 TCTTGAGAGTGCATGAAACCG 58.583 47.619 0.00 0.00 0.00 4.44
1429 1483 2.037121 TCTTGAGAGTGCATGAAACCGA 59.963 45.455 0.00 0.00 0.00 4.69
1430 1484 2.084610 TGAGAGTGCATGAAACCGAG 57.915 50.000 0.00 0.00 0.00 4.63
1431 1485 0.723981 GAGAGTGCATGAAACCGAGC 59.276 55.000 0.00 0.00 0.00 5.03
1432 1486 1.016130 AGAGTGCATGAAACCGAGCG 61.016 55.000 0.00 0.00 0.00 5.03
1433 1487 2.202349 GTGCATGAAACCGAGCGC 60.202 61.111 0.00 0.00 0.00 5.92
1434 1488 2.667874 TGCATGAAACCGAGCGCA 60.668 55.556 11.47 0.00 0.00 6.09
1435 1489 2.039974 TGCATGAAACCGAGCGCAT 61.040 52.632 11.47 0.00 0.00 4.73
1436 1490 1.584483 GCATGAAACCGAGCGCATG 60.584 57.895 11.47 2.51 40.69 4.06
1437 1491 1.796151 CATGAAACCGAGCGCATGT 59.204 52.632 11.47 0.00 34.82 3.21
1438 1492 0.247814 CATGAAACCGAGCGCATGTC 60.248 55.000 11.47 0.00 34.82 3.06
1439 1493 0.673333 ATGAAACCGAGCGCATGTCA 60.673 50.000 11.47 2.99 0.00 3.58
1440 1494 0.673333 TGAAACCGAGCGCATGTCAT 60.673 50.000 11.47 0.00 0.00 3.06
1441 1495 0.247814 GAAACCGAGCGCATGTCATG 60.248 55.000 11.47 8.56 0.00 3.07
1442 1496 0.955428 AAACCGAGCGCATGTCATGT 60.955 50.000 11.47 0.00 0.00 3.21
1443 1497 0.108377 AACCGAGCGCATGTCATGTA 60.108 50.000 11.47 0.00 0.00 2.29
1444 1498 0.528466 ACCGAGCGCATGTCATGTAG 60.528 55.000 11.47 9.79 0.00 2.74
1445 1499 0.249031 CCGAGCGCATGTCATGTAGA 60.249 55.000 11.47 0.00 0.00 2.59
1446 1500 1.126890 CGAGCGCATGTCATGTAGAG 58.873 55.000 11.47 5.29 0.00 2.43
1447 1501 1.534805 CGAGCGCATGTCATGTAGAGT 60.535 52.381 11.47 1.19 0.00 3.24
1448 1502 2.287009 CGAGCGCATGTCATGTAGAGTA 60.287 50.000 11.47 0.00 0.00 2.59
1449 1503 3.046390 GAGCGCATGTCATGTAGAGTAC 58.954 50.000 11.47 0.00 0.00 2.73
1450 1504 2.690497 AGCGCATGTCATGTAGAGTACT 59.310 45.455 11.47 0.00 0.00 2.73
1451 1505 3.046390 GCGCATGTCATGTAGAGTACTC 58.954 50.000 15.41 15.41 0.00 2.59
1452 1506 3.633235 CGCATGTCATGTAGAGTACTCC 58.367 50.000 19.38 5.74 0.00 3.85
1453 1507 3.066760 CGCATGTCATGTAGAGTACTCCA 59.933 47.826 19.38 11.48 0.00 3.86
1454 1508 4.363999 GCATGTCATGTAGAGTACTCCAC 58.636 47.826 19.38 16.44 0.00 4.02
1455 1509 4.098654 GCATGTCATGTAGAGTACTCCACT 59.901 45.833 19.99 5.77 41.47 4.00
1456 1510 5.299531 GCATGTCATGTAGAGTACTCCACTA 59.700 44.000 19.99 8.92 37.72 2.74
1457 1511 6.015856 GCATGTCATGTAGAGTACTCCACTAT 60.016 42.308 19.99 10.54 37.72 2.12
1458 1512 7.175119 GCATGTCATGTAGAGTACTCCACTATA 59.825 40.741 19.99 6.33 37.72 1.31
1459 1513 9.237187 CATGTCATGTAGAGTACTCCACTATAT 57.763 37.037 19.99 8.15 37.72 0.86
1495 1549 3.798548 GCTGGTTTCGCCTGAAATGAAAA 60.799 43.478 0.00 0.00 45.31 2.29
1496 1550 4.559153 CTGGTTTCGCCTGAAATGAAAAT 58.441 39.130 0.00 0.00 45.31 1.82
1497 1551 4.305769 TGGTTTCGCCTGAAATGAAAATG 58.694 39.130 0.00 0.00 45.31 2.32
1498 1552 4.202202 TGGTTTCGCCTGAAATGAAAATGT 60.202 37.500 0.00 0.00 45.31 2.71
1499 1553 4.150451 GGTTTCGCCTGAAATGAAAATGTG 59.850 41.667 0.00 0.00 45.31 3.21
1500 1554 4.844998 TTCGCCTGAAATGAAAATGTGA 57.155 36.364 0.00 0.00 0.00 3.58
1501 1555 5.389859 TTCGCCTGAAATGAAAATGTGAT 57.610 34.783 0.00 0.00 0.00 3.06
1502 1556 4.735985 TCGCCTGAAATGAAAATGTGATG 58.264 39.130 0.00 0.00 0.00 3.07
1697 1771 0.842467 ACTGGAAGACCAAGGAGGGG 60.842 60.000 0.00 0.00 46.32 4.79
1724 1798 0.771127 AGTGCCCCTAGTTGCAAGAA 59.229 50.000 0.00 0.00 39.57 2.52
1787 1868 4.483243 AGCCGGGCGGTTACATGG 62.483 66.667 14.39 0.00 37.65 3.66
1788 1869 4.476752 GCCGGGCGGTTACATGGA 62.477 66.667 1.81 0.00 37.65 3.41
1789 1870 2.203015 CCGGGCGGTTACATGGAG 60.203 66.667 0.00 0.00 0.00 3.86
1799 1880 3.270877 GGTTACATGGAGTAGCAGGTTG 58.729 50.000 0.00 0.00 35.81 3.77
1808 1889 2.592993 TAGCAGGTTGGCCGCTTCT 61.593 57.895 7.42 0.00 41.93 2.85
1853 1935 3.380479 TCGAGTTCTGGGTTGTTGTAG 57.620 47.619 0.00 0.00 0.00 2.74
1854 1936 2.696707 TCGAGTTCTGGGTTGTTGTAGT 59.303 45.455 0.00 0.00 0.00 2.73
1855 1937 3.890756 TCGAGTTCTGGGTTGTTGTAGTA 59.109 43.478 0.00 0.00 0.00 1.82
1856 1938 3.985925 CGAGTTCTGGGTTGTTGTAGTAC 59.014 47.826 0.00 0.00 0.00 2.73
1886 1980 2.202676 CGTCCGCCTCTTCTCTGC 60.203 66.667 0.00 0.00 0.00 4.26
1890 1984 2.262915 CGCCTCTTCTCTGCGGTT 59.737 61.111 0.00 0.00 44.29 4.44
1891 1985 1.807573 CGCCTCTTCTCTGCGGTTC 60.808 63.158 0.00 0.00 44.29 3.62
1892 1986 1.448717 GCCTCTTCTCTGCGGTTCC 60.449 63.158 0.00 0.00 0.00 3.62
1893 1987 1.975327 CCTCTTCTCTGCGGTTCCA 59.025 57.895 0.00 0.00 0.00 3.53
1894 1988 0.108424 CCTCTTCTCTGCGGTTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
1895 1989 0.891373 CTCTTCTCTGCGGTTCCAGA 59.109 55.000 0.00 0.00 39.42 3.86
1930 2024 0.537653 TTGTATCGTGGGATTCGCCA 59.462 50.000 0.00 0.00 38.95 5.69
1935 2029 2.577059 GTGGGATTCGCCACTCGA 59.423 61.111 13.85 0.00 46.88 4.04
1942 2036 2.180769 TCGCCACTCGATTCACGG 59.819 61.111 0.00 0.00 43.16 4.94
1954 2048 3.818121 TTCACGGCCTGGAACACGG 62.818 63.158 0.00 0.00 29.42 4.94
1955 2049 4.619227 CACGGCCTGGAACACGGT 62.619 66.667 0.00 0.00 29.42 4.83
1956 2050 3.868985 ACGGCCTGGAACACGGTT 61.869 61.111 0.00 0.00 29.42 4.44
1957 2051 2.344500 CGGCCTGGAACACGGTTA 59.656 61.111 0.00 0.00 0.00 2.85
2023 2117 1.083015 GTTGTAGCACCACAACGCG 60.083 57.895 3.53 3.53 46.23 6.01
2031 2125 1.074319 CACCACAACGCGCGTAGTAT 61.074 55.000 37.93 18.72 0.00 2.12
2040 2134 2.153469 CGCGCGTAGTATATCGTGTAC 58.847 52.381 24.19 0.00 39.32 2.90
2048 2142 6.393990 CGTAGTATATCGTGTACTCCTACCT 58.606 44.000 0.00 0.00 34.43 3.08
2217 2312 3.804036 TCAAAGAGCGACCTTTTCAAGA 58.196 40.909 0.00 0.00 34.41 3.02
2242 2337 4.368315 AGAAAAATGTTTGAAACCCTCGC 58.632 39.130 5.50 0.00 0.00 5.03
2244 2339 1.995376 AATGTTTGAAACCCTCGCCT 58.005 45.000 5.50 0.00 0.00 5.52
2245 2340 1.534729 ATGTTTGAAACCCTCGCCTC 58.465 50.000 5.50 0.00 0.00 4.70
2246 2341 0.472471 TGTTTGAAACCCTCGCCTCT 59.528 50.000 5.50 0.00 0.00 3.69
2247 2342 0.875059 GTTTGAAACCCTCGCCTCTG 59.125 55.000 0.00 0.00 0.00 3.35
2248 2343 0.889186 TTTGAAACCCTCGCCTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
2249 2344 2.050836 TTGAAACCCTCGCCTCTGCA 62.051 55.000 0.00 0.00 37.32 4.41
2250 2345 1.078143 GAAACCCTCGCCTCTGCAT 60.078 57.895 0.00 0.00 37.32 3.96
2258 2354 0.391661 TCGCCTCTGCATTCAAGGAC 60.392 55.000 8.34 0.98 37.32 3.85
2266 2362 0.523072 GCATTCAAGGACGCACACAT 59.477 50.000 0.00 0.00 0.00 3.21
2283 2379 7.073883 CGCACACATCCATCTTTATCAATAAG 58.926 38.462 0.00 0.00 0.00 1.73
2293 2389 8.834465 CCATCTTTATCAATAAGGTCTGACAAG 58.166 37.037 10.38 0.98 0.00 3.16
2294 2390 8.834465 CATCTTTATCAATAAGGTCTGACAAGG 58.166 37.037 10.38 0.00 0.00 3.61
2300 2396 6.480763 TCAATAAGGTCTGACAAGGCAAATA 58.519 36.000 10.38 0.00 0.00 1.40
2301 2397 6.374333 TCAATAAGGTCTGACAAGGCAAATAC 59.626 38.462 10.38 0.00 0.00 1.89
2303 2399 4.307032 AGGTCTGACAAGGCAAATACAT 57.693 40.909 10.38 0.00 0.00 2.29
2306 2402 6.058183 AGGTCTGACAAGGCAAATACATATC 58.942 40.000 10.38 0.00 0.00 1.63
2310 2406 6.992123 TCTGACAAGGCAAATACATATCGATT 59.008 34.615 1.71 0.00 0.00 3.34
2332 2428 9.804758 CGATTAACCTAAAGTCATCTTTCTAGT 57.195 33.333 0.00 0.00 42.13 2.57
2334 2430 9.892130 ATTAACCTAAAGTCATCTTTCTAGTGG 57.108 33.333 0.00 0.00 42.13 4.00
2338 2434 7.162082 CCTAAAGTCATCTTTCTAGTGGTGTT 58.838 38.462 0.00 0.00 42.13 3.32
2343 2439 4.988540 TCATCTTTCTAGTGGTGTTTGTCG 59.011 41.667 0.00 0.00 0.00 4.35
2363 2459 7.477144 TGTCGCTACACCTATAAATTTGATG 57.523 36.000 0.00 0.00 0.00 3.07
2364 2460 6.018262 TGTCGCTACACCTATAAATTTGATGC 60.018 38.462 0.00 0.00 0.00 3.91
2366 2462 6.423905 TCGCTACACCTATAAATTTGATGCTC 59.576 38.462 0.00 0.00 0.00 4.26
2369 2465 6.949352 ACACCTATAAATTTGATGCTCTGG 57.051 37.500 0.00 0.00 0.00 3.86
2373 2469 4.931661 ATAAATTTGATGCTCTGGCCTG 57.068 40.909 3.32 2.92 37.74 4.85
2380 2476 1.624479 ATGCTCTGGCCTGACCTCAG 61.624 60.000 8.48 0.00 43.40 3.35
2392 2488 1.768275 TGACCTCAGACCAACACACAT 59.232 47.619 0.00 0.00 0.00 3.21
2393 2489 2.146342 GACCTCAGACCAACACACATG 58.854 52.381 0.00 0.00 0.00 3.21
2394 2490 1.202806 ACCTCAGACCAACACACATGG 60.203 52.381 0.00 0.00 43.84 3.66
2404 2500 3.691118 CCAACACACATGGTCTAATCTGG 59.309 47.826 0.00 0.00 33.08 3.86
2426 2522 1.374758 CCTCACCAAGCCGTCTCAC 60.375 63.158 0.00 0.00 0.00 3.51
2447 2543 3.119096 GAACCGAGAGCGCCAACC 61.119 66.667 2.29 0.00 35.83 3.77
2460 2556 1.889530 GCCAACCGGTCTAGCAGACT 61.890 60.000 8.04 0.00 44.46 3.24
2461 2557 0.173708 CCAACCGGTCTAGCAGACTC 59.826 60.000 8.04 5.84 44.46 3.36
2466 2562 1.335496 CCGGTCTAGCAGACTCTTAGC 59.665 57.143 13.59 0.00 44.46 3.09
2468 2564 1.268845 GGTCTAGCAGACTCTTAGCGC 60.269 57.143 0.00 0.00 44.46 5.92
2469 2565 0.658368 TCTAGCAGACTCTTAGCGCG 59.342 55.000 0.00 0.00 0.00 6.86
2474 2570 3.248171 GACTCTTAGCGCGCACCG 61.248 66.667 35.10 19.95 40.75 4.94
2491 2588 2.505982 GCATGCCCCGCTCTAGAA 59.494 61.111 6.36 0.00 0.00 2.10
2495 2592 1.821061 ATGCCCCGCTCTAGAATCCG 61.821 60.000 0.00 0.00 0.00 4.18
2501 2598 1.443407 GCTCTAGAATCCGCTGCCA 59.557 57.895 0.00 0.00 0.00 4.92
2520 2617 2.479730 CCAACATCTTCCGTCGTCCTAG 60.480 54.545 0.00 0.00 0.00 3.02
2522 2619 1.025812 CATCTTCCGTCGTCCTAGCT 58.974 55.000 0.00 0.00 0.00 3.32
2533 2630 0.470268 GTCCTAGCTTCGGGAGGGAT 60.470 60.000 0.00 0.00 31.66 3.85
2544 2641 1.340017 CGGGAGGGATCAACACATTGT 60.340 52.381 0.00 0.00 37.11 2.71
2550 2647 2.094545 GGGATCAACACATTGTCCTTGC 60.095 50.000 0.00 0.00 36.77 4.01
2551 2648 2.094545 GGATCAACACATTGTCCTTGCC 60.095 50.000 0.00 0.00 37.11 4.52
2560 2657 2.991540 GTCCTTGCCAGGCCCAAC 60.992 66.667 9.64 0.00 40.58 3.77
2561 2658 4.299796 TCCTTGCCAGGCCCAACC 62.300 66.667 9.64 0.00 40.58 3.77
2564 2661 4.531426 TTGCCAGGCCCAACCGTT 62.531 61.111 9.64 0.00 46.52 4.44
2570 2667 2.359478 GGCCCAACCGTTGTCGAT 60.359 61.111 10.34 0.00 39.71 3.59
2572 2669 2.867472 CCCAACCGTTGTCGATGC 59.133 61.111 10.34 0.00 39.71 3.91
2579 2687 0.309302 CCGTTGTCGATGCCAAACAA 59.691 50.000 0.00 0.00 39.71 2.83
2581 2689 1.394697 GTTGTCGATGCCAAACAACG 58.605 50.000 5.67 0.00 45.14 4.10
2586 2694 1.729131 GATGCCAAACAACGCCACG 60.729 57.895 0.00 0.00 0.00 4.94
2590 2698 1.154488 CCAAACAACGCCACGATCG 60.154 57.895 14.88 14.88 0.00 3.69
2609 2717 2.173382 GCGTGCGTCCATCAACAC 59.827 61.111 0.00 0.00 0.00 3.32
2621 2729 1.439353 ATCAACACGCATCCATCGCC 61.439 55.000 0.00 0.00 0.00 5.54
2632 2740 2.418910 CCATCGCCGAGACTCCACT 61.419 63.158 0.00 0.00 0.00 4.00
2644 2752 1.255667 ACTCCACTACGCCATTCCGT 61.256 55.000 0.00 0.00 44.62 4.69
2655 2763 3.834799 ATTCCGTCGAGACCCGCC 61.835 66.667 0.00 0.00 38.37 6.13
2665 2773 3.186047 GACCCGCCGTCGTTGATG 61.186 66.667 0.00 0.00 0.00 3.07
2678 2786 1.004610 CGTTGATGCGGTAGATGCAAG 60.005 52.381 0.00 0.00 46.87 4.01
2681 2789 1.221414 GATGCGGTAGATGCAAGACC 58.779 55.000 0.00 0.00 46.87 3.85
2685 2793 3.460648 GGTAGATGCAAGACCGCTT 57.539 52.632 0.00 0.00 33.74 4.68
2694 2802 1.151668 CAAGACCGCTTCACCTCTTG 58.848 55.000 0.00 0.00 35.12 3.02
2695 2803 0.035458 AAGACCGCTTCACCTCTTGG 59.965 55.000 0.00 0.00 39.83 3.61
2697 2805 2.747855 CCGCTTCACCTCTTGGCC 60.748 66.667 0.00 0.00 36.63 5.36
2699 2807 2.759795 GCTTCACCTCTTGGCCCT 59.240 61.111 0.00 0.00 36.63 5.19
2700 2808 1.377856 GCTTCACCTCTTGGCCCTC 60.378 63.158 0.00 0.00 36.63 4.30
2701 2809 1.301293 CTTCACCTCTTGGCCCTCC 59.699 63.158 0.00 0.00 36.63 4.30
2702 2810 2.527951 CTTCACCTCTTGGCCCTCCG 62.528 65.000 0.00 0.00 36.63 4.63
2703 2811 3.322466 CACCTCTTGGCCCTCCGT 61.322 66.667 0.00 0.00 36.63 4.69
2704 2812 3.003763 ACCTCTTGGCCCTCCGTC 61.004 66.667 0.00 0.00 36.63 4.79
2705 2813 3.787001 CCTCTTGGCCCTCCGTCC 61.787 72.222 0.00 0.00 34.14 4.79
2706 2814 2.685380 CTCTTGGCCCTCCGTCCT 60.685 66.667 0.00 0.00 34.14 3.85
2707 2815 3.003173 TCTTGGCCCTCCGTCCTG 61.003 66.667 0.00 0.00 34.14 3.86
2708 2816 4.785453 CTTGGCCCTCCGTCCTGC 62.785 72.222 0.00 0.00 34.14 4.85
2713 2821 4.463879 CCCTCCGTCCTGCAGCTG 62.464 72.222 10.11 10.11 0.00 4.24
2715 2823 4.079850 CTCCGTCCTGCAGCTGCT 62.080 66.667 36.61 0.00 42.66 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108396 TAGCAGCACTGACTTGGCAA 59.892 50.000 0.81 0.00 0.00 4.52
1 2 0.603707 GTAGCAGCACTGACTTGGCA 60.604 55.000 0.81 0.00 0.00 4.92
2 3 0.603707 TGTAGCAGCACTGACTTGGC 60.604 55.000 0.81 0.00 0.00 4.52
3 4 1.882912 TTGTAGCAGCACTGACTTGG 58.117 50.000 0.81 0.00 0.00 3.61
4 5 4.214971 AGAATTTGTAGCAGCACTGACTTG 59.785 41.667 0.81 0.00 0.00 3.16
5 6 4.392940 AGAATTTGTAGCAGCACTGACTT 58.607 39.130 0.81 0.00 0.00 3.01
6 7 4.013267 AGAATTTGTAGCAGCACTGACT 57.987 40.909 0.81 1.13 0.00 3.41
7 8 4.093556 GGTAGAATTTGTAGCAGCACTGAC 59.906 45.833 0.81 0.00 0.00 3.51
8 9 4.020218 AGGTAGAATTTGTAGCAGCACTGA 60.020 41.667 0.81 0.00 0.00 3.41
9 10 4.256920 AGGTAGAATTTGTAGCAGCACTG 58.743 43.478 5.68 0.00 0.00 3.66
10 11 4.508662 GAGGTAGAATTTGTAGCAGCACT 58.491 43.478 5.68 0.00 0.00 4.40
11 12 3.307242 CGAGGTAGAATTTGTAGCAGCAC 59.693 47.826 5.68 0.00 0.00 4.40
12 13 3.194755 TCGAGGTAGAATTTGTAGCAGCA 59.805 43.478 5.68 0.00 0.00 4.41
13 14 3.782046 TCGAGGTAGAATTTGTAGCAGC 58.218 45.455 5.68 0.00 0.00 5.25
14 15 5.250235 TCTCGAGGTAGAATTTGTAGCAG 57.750 43.478 13.56 0.29 0.00 4.24
15 16 4.440250 GCTCTCGAGGTAGAATTTGTAGCA 60.440 45.833 13.56 0.00 0.00 3.49
16 17 4.045783 GCTCTCGAGGTAGAATTTGTAGC 58.954 47.826 13.56 5.59 0.00 3.58
17 18 5.508200 AGCTCTCGAGGTAGAATTTGTAG 57.492 43.478 13.56 0.00 37.39 2.74
47 48 1.057361 CGCTAGCAAAAGTCGCGAC 59.943 57.895 31.30 31.30 45.99 5.19
76 77 2.203788 TCCTTCACGTGGGGAGCT 60.204 61.111 21.31 0.00 0.00 4.09
103 104 1.666553 CTACACGGCTTGGCGTGAA 60.667 57.895 41.09 0.00 36.88 3.18
104 105 2.048597 CTACACGGCTTGGCGTGA 60.049 61.111 41.09 27.75 36.88 4.35
106 107 1.808531 TACACTACACGGCTTGGCGT 61.809 55.000 16.22 16.22 0.00 5.68
115 116 0.780002 GGTGCACGTTACACTACACG 59.220 55.000 11.45 0.00 42.29 4.49
134 135 1.426816 CTAGCTGCGTGCATGAGTGG 61.427 60.000 10.93 0.00 45.94 4.00
292 298 3.083997 GGTCCCGGGCACAGATCT 61.084 66.667 18.49 0.00 0.00 2.75
315 321 2.749076 CTCTGGCATTGACGGAATTTGA 59.251 45.455 1.95 0.00 0.00 2.69
400 408 8.717821 CGAAATTTAAAACACAGGATCAGAGTA 58.282 33.333 0.00 0.00 0.00 2.59
401 409 7.308589 CCGAAATTTAAAACACAGGATCAGAGT 60.309 37.037 0.00 0.00 0.00 3.24
402 410 7.023575 CCGAAATTTAAAACACAGGATCAGAG 58.976 38.462 0.00 0.00 0.00 3.35
403 411 6.569610 GCCGAAATTTAAAACACAGGATCAGA 60.570 38.462 0.00 0.00 0.00 3.27
404 412 5.572896 GCCGAAATTTAAAACACAGGATCAG 59.427 40.000 0.00 0.00 0.00 2.90
405 413 5.465935 GCCGAAATTTAAAACACAGGATCA 58.534 37.500 0.00 0.00 0.00 2.92
406 414 4.862574 GGCCGAAATTTAAAACACAGGATC 59.137 41.667 0.00 0.00 0.00 3.36
407 415 4.617298 CGGCCGAAATTTAAAACACAGGAT 60.617 41.667 24.07 0.00 0.00 3.24
408 416 3.304794 CGGCCGAAATTTAAAACACAGGA 60.305 43.478 24.07 0.00 0.00 3.86
409 417 2.983803 CGGCCGAAATTTAAAACACAGG 59.016 45.455 24.07 0.00 0.00 4.00
410 418 3.891324 TCGGCCGAAATTTAAAACACAG 58.109 40.909 28.99 0.00 0.00 3.66
411 419 3.564644 TCTCGGCCGAAATTTAAAACACA 59.435 39.130 30.53 0.56 0.00 3.72
412 420 4.149910 TCTCGGCCGAAATTTAAAACAC 57.850 40.909 30.53 0.00 0.00 3.32
413 421 4.832590 TTCTCGGCCGAAATTTAAAACA 57.167 36.364 30.53 1.31 0.00 2.83
414 422 6.349426 GTTTTTCTCGGCCGAAATTTAAAAC 58.651 36.000 30.53 28.60 33.33 2.43
415 423 5.173492 CGTTTTTCTCGGCCGAAATTTAAAA 59.827 36.000 30.53 23.50 33.33 1.52
416 424 4.676018 CGTTTTTCTCGGCCGAAATTTAAA 59.324 37.500 30.53 20.02 33.33 1.52
417 425 4.220572 CGTTTTTCTCGGCCGAAATTTAA 58.779 39.130 30.53 16.19 33.33 1.52
418 426 3.365164 CCGTTTTTCTCGGCCGAAATTTA 60.365 43.478 30.53 11.99 41.48 1.40
419 427 2.606065 CCGTTTTTCTCGGCCGAAATTT 60.606 45.455 30.53 0.00 41.48 1.82
420 428 1.068816 CCGTTTTTCTCGGCCGAAATT 60.069 47.619 30.53 0.00 41.48 1.82
421 429 0.519961 CCGTTTTTCTCGGCCGAAAT 59.480 50.000 30.53 0.00 41.48 2.17
422 430 0.532417 TCCGTTTTTCTCGGCCGAAA 60.532 50.000 30.53 21.88 46.49 3.46
423 431 0.320946 ATCCGTTTTTCTCGGCCGAA 60.321 50.000 30.53 17.19 46.49 4.30
424 432 0.320946 AATCCGTTTTTCTCGGCCGA 60.321 50.000 29.03 29.03 46.49 5.54
425 433 0.519961 AAATCCGTTTTTCTCGGCCG 59.480 50.000 22.12 22.12 46.49 6.13
426 434 1.465187 CGAAATCCGTTTTTCTCGGCC 60.465 52.381 0.00 0.00 46.49 6.13
427 435 1.465187 CCGAAATCCGTTTTTCTCGGC 60.465 52.381 0.00 0.00 46.49 5.54
429 437 1.465187 GGCCGAAATCCGTTTTTCTCG 60.465 52.381 0.00 0.00 34.19 4.04
430 438 1.465187 CGGCCGAAATCCGTTTTTCTC 60.465 52.381 24.07 0.00 41.85 2.87
431 439 0.519961 CGGCCGAAATCCGTTTTTCT 59.480 50.000 24.07 0.00 41.85 2.52
432 440 0.518195 TCGGCCGAAATCCGTTTTTC 59.482 50.000 28.99 0.00 46.49 2.29
433 441 0.953003 TTCGGCCGAAATCCGTTTTT 59.047 45.000 37.13 0.00 46.49 1.94
434 442 1.170442 ATTCGGCCGAAATCCGTTTT 58.830 45.000 41.31 21.74 46.49 2.43
435 443 1.170442 AATTCGGCCGAAATCCGTTT 58.830 45.000 41.31 27.41 46.49 3.60
436 444 1.131693 GAAATTCGGCCGAAATCCGTT 59.868 47.619 41.31 28.12 46.49 4.44
437 445 0.730840 GAAATTCGGCCGAAATCCGT 59.269 50.000 41.31 24.03 46.49 4.69
439 447 3.526825 CGAAATTCGGCCGAAATCC 57.473 52.632 41.31 29.08 37.69 3.01
449 457 1.934463 CCGAGATGGCCGAAATTCG 59.066 57.895 8.62 8.62 40.07 3.34
467 475 0.606673 GGATAGATTTCGCCCCAGGC 60.607 60.000 0.00 0.00 46.75 4.85
468 476 1.059913 AGGATAGATTTCGCCCCAGG 58.940 55.000 0.00 0.00 0.00 4.45
469 477 2.498167 CAAGGATAGATTTCGCCCCAG 58.502 52.381 0.00 0.00 0.00 4.45
470 478 1.142870 CCAAGGATAGATTTCGCCCCA 59.857 52.381 0.00 0.00 0.00 4.96
471 479 1.897560 CCAAGGATAGATTTCGCCCC 58.102 55.000 0.00 0.00 0.00 5.80
472 480 1.239347 GCCAAGGATAGATTTCGCCC 58.761 55.000 0.00 0.00 0.00 6.13
473 481 1.239347 GGCCAAGGATAGATTTCGCC 58.761 55.000 0.00 0.00 0.00 5.54
474 482 0.868406 CGGCCAAGGATAGATTTCGC 59.132 55.000 2.24 0.00 0.00 4.70
475 483 2.526304 TCGGCCAAGGATAGATTTCG 57.474 50.000 2.24 0.00 0.00 3.46
476 484 5.507985 CCAATTTCGGCCAAGGATAGATTTC 60.508 44.000 2.24 0.00 0.00 2.17
477 485 4.342092 CCAATTTCGGCCAAGGATAGATTT 59.658 41.667 2.24 0.00 0.00 2.17
478 486 3.891366 CCAATTTCGGCCAAGGATAGATT 59.109 43.478 2.24 0.00 0.00 2.40
479 487 3.117512 ACCAATTTCGGCCAAGGATAGAT 60.118 43.478 2.24 0.00 0.00 1.98
480 488 2.241176 ACCAATTTCGGCCAAGGATAGA 59.759 45.455 2.24 0.00 0.00 1.98
481 489 2.618709 GACCAATTTCGGCCAAGGATAG 59.381 50.000 2.24 0.00 0.00 2.08
482 490 2.025793 TGACCAATTTCGGCCAAGGATA 60.026 45.455 2.24 0.00 0.00 2.59
483 491 1.272425 TGACCAATTTCGGCCAAGGAT 60.272 47.619 2.24 0.00 0.00 3.24
484 492 0.111446 TGACCAATTTCGGCCAAGGA 59.889 50.000 2.24 0.00 0.00 3.36
485 493 0.965439 TTGACCAATTTCGGCCAAGG 59.035 50.000 2.24 0.00 0.00 3.61
486 494 2.810439 TTTGACCAATTTCGGCCAAG 57.190 45.000 2.24 0.00 0.00 3.61
487 495 3.760580 AATTTGACCAATTTCGGCCAA 57.239 38.095 2.24 0.00 30.09 4.52
488 496 3.070159 TCAAATTTGACCAATTTCGGCCA 59.930 39.130 16.91 0.00 42.28 5.36
489 497 3.658709 TCAAATTTGACCAATTTCGGCC 58.341 40.909 16.91 0.00 42.28 6.13
517 525 9.820725 ACTGAAATTTGACTCAATTTTGATCAA 57.179 25.926 13.77 3.38 36.46 2.57
518 526 9.467258 GACTGAAATTTGACTCAATTTTGATCA 57.533 29.630 13.77 0.00 36.46 2.92
519 527 9.467258 TGACTGAAATTTGACTCAATTTTGATC 57.533 29.630 13.77 9.73 36.46 2.92
520 528 9.820725 TTGACTGAAATTTGACTCAATTTTGAT 57.179 25.926 13.77 2.87 36.46 2.57
521 529 9.650539 TTTGACTGAAATTTGACTCAATTTTGA 57.349 25.926 13.77 7.08 30.49 2.69
526 534 9.472361 CAGAATTTGACTGAAATTTGACTCAAT 57.528 29.630 0.00 0.00 43.12 2.57
527 535 7.922278 CCAGAATTTGACTGAAATTTGACTCAA 59.078 33.333 0.00 0.00 43.12 3.02
528 536 7.068593 ACCAGAATTTGACTGAAATTTGACTCA 59.931 33.333 0.00 0.00 43.12 3.41
529 537 7.428826 ACCAGAATTTGACTGAAATTTGACTC 58.571 34.615 0.00 0.00 43.12 3.36
530 538 7.068593 TGACCAGAATTTGACTGAAATTTGACT 59.931 33.333 0.00 0.00 43.12 3.41
531 539 7.202526 TGACCAGAATTTGACTGAAATTTGAC 58.797 34.615 0.00 0.00 43.12 3.18
532 540 7.345422 TGACCAGAATTTGACTGAAATTTGA 57.655 32.000 0.00 0.00 43.12 2.69
533 541 8.422973 TTTGACCAGAATTTGACTGAAATTTG 57.577 30.769 0.00 0.00 43.12 2.32
534 542 9.617523 AATTTGACCAGAATTTGACTGAAATTT 57.382 25.926 0.00 0.00 43.12 1.82
535 543 9.617523 AAATTTGACCAGAATTTGACTGAAATT 57.382 25.926 0.00 0.00 45.29 1.82
536 544 9.617523 AAAATTTGACCAGAATTTGACTGAAAT 57.382 25.926 0.00 0.00 36.94 2.17
537 545 8.881743 CAAAATTTGACCAGAATTTGACTGAAA 58.118 29.630 0.00 0.00 36.94 2.69
538 546 7.495279 CCAAAATTTGACCAGAATTTGACTGAA 59.505 33.333 7.37 0.00 36.94 3.02
539 547 6.985645 CCAAAATTTGACCAGAATTTGACTGA 59.014 34.615 7.37 0.00 36.94 3.41
540 548 6.293027 GCCAAAATTTGACCAGAATTTGACTG 60.293 38.462 7.37 0.00 36.94 3.51
541 549 5.759763 GCCAAAATTTGACCAGAATTTGACT 59.240 36.000 7.37 0.00 36.94 3.41
542 550 5.049474 GGCCAAAATTTGACCAGAATTTGAC 60.049 40.000 7.37 0.00 36.94 3.18
543 551 5.062528 GGCCAAAATTTGACCAGAATTTGA 58.937 37.500 7.37 0.00 36.94 2.69
544 552 4.083908 CGGCCAAAATTTGACCAGAATTTG 60.084 41.667 11.46 0.00 36.94 2.32
545 553 4.064388 CGGCCAAAATTTGACCAGAATTT 58.936 39.130 11.46 0.00 38.09 1.82
546 554 3.323403 TCGGCCAAAATTTGACCAGAATT 59.677 39.130 11.46 0.00 31.97 2.17
547 555 2.896685 TCGGCCAAAATTTGACCAGAAT 59.103 40.909 11.46 0.00 31.97 2.40
548 556 2.311463 TCGGCCAAAATTTGACCAGAA 58.689 42.857 11.46 0.00 31.97 3.02
549 557 1.988293 TCGGCCAAAATTTGACCAGA 58.012 45.000 11.46 6.68 31.97 3.86
550 558 2.810439 TTCGGCCAAAATTTGACCAG 57.190 45.000 11.46 4.59 31.97 4.00
551 559 3.760580 ATTTCGGCCAAAATTTGACCA 57.239 38.095 11.46 0.00 31.97 4.02
552 560 4.061596 TGAATTTCGGCCAAAATTTGACC 58.938 39.130 15.44 3.92 38.59 4.02
553 561 4.377328 GCTGAATTTCGGCCAAAATTTGAC 60.377 41.667 15.44 4.23 42.80 3.18
554 562 3.745458 GCTGAATTTCGGCCAAAATTTGA 59.255 39.130 15.44 5.32 42.80 2.69
555 563 4.069289 GCTGAATTTCGGCCAAAATTTG 57.931 40.909 15.44 12.22 42.80 2.32
564 572 2.996525 CCGAGATGGCTGAATTTCGGC 61.997 57.143 19.86 19.86 44.36 5.54
565 573 0.940126 CCGAGATGGCTGAATTTCGG 59.060 55.000 10.47 10.47 44.73 4.30
596 604 9.853555 GTTTTGATTTTGGGTTTGAGAATTTTT 57.146 25.926 0.00 0.00 0.00 1.94
597 605 9.018582 TGTTTTGATTTTGGGTTTGAGAATTTT 57.981 25.926 0.00 0.00 0.00 1.82
598 606 8.458052 GTGTTTTGATTTTGGGTTTGAGAATTT 58.542 29.630 0.00 0.00 0.00 1.82
599 607 7.609532 TGTGTTTTGATTTTGGGTTTGAGAATT 59.390 29.630 0.00 0.00 0.00 2.17
600 608 7.108847 TGTGTTTTGATTTTGGGTTTGAGAAT 58.891 30.769 0.00 0.00 0.00 2.40
601 609 6.467677 TGTGTTTTGATTTTGGGTTTGAGAA 58.532 32.000 0.00 0.00 0.00 2.87
602 610 6.042638 TGTGTTTTGATTTTGGGTTTGAGA 57.957 33.333 0.00 0.00 0.00 3.27
603 611 5.220643 GCTGTGTTTTGATTTTGGGTTTGAG 60.221 40.000 0.00 0.00 0.00 3.02
604 612 4.633565 GCTGTGTTTTGATTTTGGGTTTGA 59.366 37.500 0.00 0.00 0.00 2.69
605 613 4.635324 AGCTGTGTTTTGATTTTGGGTTTG 59.365 37.500 0.00 0.00 0.00 2.93
606 614 4.842574 AGCTGTGTTTTGATTTTGGGTTT 58.157 34.783 0.00 0.00 0.00 3.27
607 615 4.162131 AGAGCTGTGTTTTGATTTTGGGTT 59.838 37.500 0.00 0.00 0.00 4.11
608 616 3.706086 AGAGCTGTGTTTTGATTTTGGGT 59.294 39.130 0.00 0.00 0.00 4.51
609 617 4.053295 CAGAGCTGTGTTTTGATTTTGGG 58.947 43.478 1.91 0.00 0.00 4.12
610 618 4.935702 TCAGAGCTGTGTTTTGATTTTGG 58.064 39.130 11.09 0.00 0.00 3.28
611 619 6.210796 TGATCAGAGCTGTGTTTTGATTTTG 58.789 36.000 11.09 0.00 0.00 2.44
612 620 6.263842 TCTGATCAGAGCTGTGTTTTGATTTT 59.736 34.615 21.67 0.00 32.82 1.82
613 621 5.766670 TCTGATCAGAGCTGTGTTTTGATTT 59.233 36.000 21.67 0.00 32.82 2.17
614 622 5.311265 TCTGATCAGAGCTGTGTTTTGATT 58.689 37.500 21.67 0.00 32.82 2.57
615 623 4.903054 TCTGATCAGAGCTGTGTTTTGAT 58.097 39.130 21.67 0.00 32.82 2.57
616 624 4.341366 TCTGATCAGAGCTGTGTTTTGA 57.659 40.909 21.67 3.41 32.82 2.69
617 625 5.624344 AATCTGATCAGAGCTGTGTTTTG 57.376 39.130 28.26 0.00 41.33 2.44
618 626 6.471146 ACTAATCTGATCAGAGCTGTGTTTT 58.529 36.000 28.26 17.67 41.33 2.43
619 627 6.047511 ACTAATCTGATCAGAGCTGTGTTT 57.952 37.500 28.26 18.31 41.33 2.83
620 628 5.674052 ACTAATCTGATCAGAGCTGTGTT 57.326 39.130 28.26 18.95 41.33 3.32
621 629 6.782082 TTACTAATCTGATCAGAGCTGTGT 57.218 37.500 28.26 21.82 41.33 3.72
622 630 6.867816 GGATTACTAATCTGATCAGAGCTGTG 59.132 42.308 28.26 18.10 41.33 3.66
623 631 6.552725 TGGATTACTAATCTGATCAGAGCTGT 59.447 38.462 28.26 24.68 41.33 4.40
624 632 6.867816 GTGGATTACTAATCTGATCAGAGCTG 59.132 42.308 28.26 21.10 41.33 4.24
625 633 6.014669 GGTGGATTACTAATCTGATCAGAGCT 60.015 42.308 28.26 20.17 41.33 4.09
626 634 6.162777 GGTGGATTACTAATCTGATCAGAGC 58.837 44.000 28.26 8.17 41.33 4.09
661 669 4.651503 TCTCTCTCTCTCTCTCTCTCTTCC 59.348 50.000 0.00 0.00 0.00 3.46
662 670 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
663 671 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
664 672 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
665 673 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
666 674 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
667 675 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
668 676 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
669 677 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
670 678 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
671 679 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
672 680 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
673 681 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
674 682 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
767 780 7.345422 ACATATGCTAGCTAGATACTCATGG 57.655 40.000 25.15 14.70 0.00 3.66
831 844 0.393537 AGCTGGATGGAAAAGGCGAG 60.394 55.000 0.00 0.00 0.00 5.03
833 846 0.890683 AAAGCTGGATGGAAAAGGCG 59.109 50.000 0.00 0.00 0.00 5.52
835 848 3.790152 GCTAAAGCTGGATGGAAAAGG 57.210 47.619 0.00 0.00 38.21 3.11
954 995 4.455606 CAAAAGAGAAGAGAAGTGGTGGT 58.544 43.478 0.00 0.00 0.00 4.16
955 996 3.817647 CCAAAAGAGAAGAGAAGTGGTGG 59.182 47.826 0.00 0.00 0.00 4.61
959 1000 4.261363 GGTTGCCAAAAGAGAAGAGAAGTG 60.261 45.833 0.00 0.00 0.00 3.16
960 1001 3.885901 GGTTGCCAAAAGAGAAGAGAAGT 59.114 43.478 0.00 0.00 0.00 3.01
961 1002 3.254411 GGGTTGCCAAAAGAGAAGAGAAG 59.746 47.826 0.00 0.00 0.00 2.85
962 1003 3.222603 GGGTTGCCAAAAGAGAAGAGAA 58.777 45.455 0.00 0.00 0.00 2.87
963 1004 2.174639 TGGGTTGCCAAAAGAGAAGAGA 59.825 45.455 0.00 0.00 0.00 3.10
964 1005 2.555757 CTGGGTTGCCAAAAGAGAAGAG 59.444 50.000 0.00 0.00 0.00 2.85
1014 1058 2.284258 AGGAGGACGAGCAGCCTT 60.284 61.111 0.00 0.00 33.84 4.35
1062 1109 1.830477 AGAGATCTCACCTTGTGCTCC 59.170 52.381 24.39 0.00 32.98 4.70
1090 1137 3.845259 TACTGCCCGCCGGATGAC 61.845 66.667 5.05 0.00 0.00 3.06
1091 1138 3.845259 GTACTGCCCGCCGGATGA 61.845 66.667 5.05 0.00 0.00 2.92
1113 1160 1.005215 CAATCTGGCTTCCCTCACCTT 59.995 52.381 0.00 0.00 0.00 3.50
1115 1162 1.034292 GCAATCTGGCTTCCCTCACC 61.034 60.000 0.00 0.00 0.00 4.02
1117 1168 0.254178 GAGCAATCTGGCTTCCCTCA 59.746 55.000 0.00 0.00 45.99 3.86
1118 1169 0.813210 CGAGCAATCTGGCTTCCCTC 60.813 60.000 0.00 0.00 45.99 4.30
1119 1170 1.222936 CGAGCAATCTGGCTTCCCT 59.777 57.895 0.00 0.00 45.99 4.20
1120 1171 1.821332 CCGAGCAATCTGGCTTCCC 60.821 63.158 0.00 0.00 45.99 3.97
1121 1172 2.476320 GCCGAGCAATCTGGCTTCC 61.476 63.158 0.00 0.00 45.99 3.46
1129 1180 1.138247 CCAAGCAAGCCGAGCAATC 59.862 57.895 0.00 0.00 0.00 2.67
1131 1182 2.769652 ATCCCAAGCAAGCCGAGCAA 62.770 55.000 0.00 0.00 0.00 3.91
1134 1185 2.768492 GCATCCCAAGCAAGCCGAG 61.768 63.158 0.00 0.00 0.00 4.63
1138 1189 1.176527 TGTAAGCATCCCAAGCAAGC 58.823 50.000 0.00 0.00 0.00 4.01
1159 1213 4.492494 ACACCTGATCACAGAATATGCA 57.508 40.909 0.00 0.00 46.03 3.96
1167 1221 1.808945 GAGGCAAACACCTGATCACAG 59.191 52.381 0.00 0.00 41.32 3.66
1192 1246 2.629050 TTATCCTCGTGCTCTGCGGC 62.629 60.000 0.00 0.00 0.00 6.53
1196 1250 3.170791 ACACATTATCCTCGTGCTCTG 57.829 47.619 0.00 0.00 33.89 3.35
1203 1257 3.314357 TCACTCGGTACACATTATCCTCG 59.686 47.826 0.00 0.00 0.00 4.63
1233 1287 2.565841 CAAGGCGAGGAGGAAATAAGG 58.434 52.381 0.00 0.00 0.00 2.69
1234 1288 1.943340 GCAAGGCGAGGAGGAAATAAG 59.057 52.381 0.00 0.00 0.00 1.73
1235 1289 2.038387 GCAAGGCGAGGAGGAAATAA 57.962 50.000 0.00 0.00 0.00 1.40
1237 1291 4.645809 GCAAGGCGAGGAGGAAAT 57.354 55.556 0.00 0.00 0.00 2.17
1250 1304 5.858049 TCTCTTTAAAAATGTGCATCGCAAG 59.142 36.000 0.00 0.00 41.47 4.01
1253 1307 6.875926 AATCTCTTTAAAAATGTGCATCGC 57.124 33.333 0.00 0.00 0.00 4.58
1254 1308 9.519905 CAAAAATCTCTTTAAAAATGTGCATCG 57.480 29.630 0.00 0.00 0.00 3.84
1256 1310 8.011106 CGCAAAAATCTCTTTAAAAATGTGCAT 58.989 29.630 0.00 0.00 0.00 3.96
1275 1329 2.227865 GCAACAGATCTACCCGCAAAAA 59.772 45.455 0.00 0.00 0.00 1.94
1281 1335 2.898729 ATCAGCAACAGATCTACCCG 57.101 50.000 0.00 0.00 0.00 5.28
1284 1338 7.932120 AAATACGTATCAGCAACAGATCTAC 57.068 36.000 8.86 0.00 0.00 2.59
1313 1367 7.703058 AACAACTCAGAAAGGAGAAAAGAAA 57.297 32.000 0.00 0.00 38.30 2.52
1314 1368 7.611855 AGAAACAACTCAGAAAGGAGAAAAGAA 59.388 33.333 0.00 0.00 38.30 2.52
1315 1369 7.112779 AGAAACAACTCAGAAAGGAGAAAAGA 58.887 34.615 0.00 0.00 38.30 2.52
1316 1370 7.326968 AGAAACAACTCAGAAAGGAGAAAAG 57.673 36.000 0.00 0.00 38.30 2.27
1317 1371 7.393234 TGAAGAAACAACTCAGAAAGGAGAAAA 59.607 33.333 0.00 0.00 38.30 2.29
1318 1372 6.884295 TGAAGAAACAACTCAGAAAGGAGAAA 59.116 34.615 0.00 0.00 38.30 2.52
1329 1383 3.045634 TCCTCCCTGAAGAAACAACTCA 58.954 45.455 0.00 0.00 0.00 3.41
1332 1386 3.142174 CTGTCCTCCCTGAAGAAACAAC 58.858 50.000 0.00 0.00 0.00 3.32
1335 1389 1.003696 CCCTGTCCTCCCTGAAGAAAC 59.996 57.143 0.00 0.00 0.00 2.78
1359 1413 0.537188 ACTCACGGTATTGCTGGAGG 59.463 55.000 0.00 0.00 0.00 4.30
1379 1433 3.846360 AGAAATAGAAAGGGTGACGACG 58.154 45.455 0.00 0.00 0.00 5.12
1381 1435 5.988310 TGTAGAAATAGAAAGGGTGACGA 57.012 39.130 0.00 0.00 0.00 4.20
1383 1437 9.841880 GATTTTTGTAGAAATAGAAAGGGTGAC 57.158 33.333 0.00 0.00 29.75 3.67
1394 1448 9.283768 TGCACTCTCAAGATTTTTGTAGAAATA 57.716 29.630 0.00 0.00 29.75 1.40
1395 1449 8.169977 TGCACTCTCAAGATTTTTGTAGAAAT 57.830 30.769 0.00 0.00 32.16 2.17
1396 1450 7.566760 TGCACTCTCAAGATTTTTGTAGAAA 57.433 32.000 0.00 0.00 0.00 2.52
1398 1452 6.936335 TCATGCACTCTCAAGATTTTTGTAGA 59.064 34.615 0.00 0.00 0.00 2.59
1399 1453 7.137490 TCATGCACTCTCAAGATTTTTGTAG 57.863 36.000 0.00 0.00 0.00 2.74
1400 1454 7.509141 TTCATGCACTCTCAAGATTTTTGTA 57.491 32.000 0.00 0.00 0.00 2.41
1401 1455 6.395426 TTCATGCACTCTCAAGATTTTTGT 57.605 33.333 0.00 0.00 0.00 2.83
1402 1456 6.145048 GGTTTCATGCACTCTCAAGATTTTTG 59.855 38.462 0.00 0.00 0.00 2.44
1403 1457 6.218746 GGTTTCATGCACTCTCAAGATTTTT 58.781 36.000 0.00 0.00 0.00 1.94
1404 1458 5.563475 CGGTTTCATGCACTCTCAAGATTTT 60.563 40.000 0.00 0.00 0.00 1.82
1405 1459 4.083110 CGGTTTCATGCACTCTCAAGATTT 60.083 41.667 0.00 0.00 0.00 2.17
1406 1460 3.438087 CGGTTTCATGCACTCTCAAGATT 59.562 43.478 0.00 0.00 0.00 2.40
1407 1461 3.005554 CGGTTTCATGCACTCTCAAGAT 58.994 45.455 0.00 0.00 0.00 2.40
1408 1462 2.037121 TCGGTTTCATGCACTCTCAAGA 59.963 45.455 0.00 0.00 0.00 3.02
1409 1463 2.414481 CTCGGTTTCATGCACTCTCAAG 59.586 50.000 0.00 0.00 0.00 3.02
1410 1464 2.416747 CTCGGTTTCATGCACTCTCAA 58.583 47.619 0.00 0.00 0.00 3.02
1411 1465 1.941209 GCTCGGTTTCATGCACTCTCA 60.941 52.381 0.00 0.00 0.00 3.27
1412 1466 0.723981 GCTCGGTTTCATGCACTCTC 59.276 55.000 0.00 0.00 0.00 3.20
1413 1467 1.016130 CGCTCGGTTTCATGCACTCT 61.016 55.000 0.00 0.00 0.00 3.24
1414 1468 1.421485 CGCTCGGTTTCATGCACTC 59.579 57.895 0.00 0.00 0.00 3.51
1415 1469 2.680913 GCGCTCGGTTTCATGCACT 61.681 57.895 0.00 0.00 0.00 4.40
1416 1470 2.202349 GCGCTCGGTTTCATGCAC 60.202 61.111 0.00 0.00 0.00 4.57
1417 1471 2.039974 ATGCGCTCGGTTTCATGCA 61.040 52.632 9.73 0.00 36.69 3.96
1418 1472 1.584483 CATGCGCTCGGTTTCATGC 60.584 57.895 9.73 0.00 31.34 4.06
1419 1473 0.247814 GACATGCGCTCGGTTTCATG 60.248 55.000 9.73 3.49 41.35 3.07
1420 1474 0.673333 TGACATGCGCTCGGTTTCAT 60.673 50.000 9.73 0.00 0.00 2.57
1421 1475 0.673333 ATGACATGCGCTCGGTTTCA 60.673 50.000 9.73 3.02 0.00 2.69
1422 1476 0.247814 CATGACATGCGCTCGGTTTC 60.248 55.000 9.73 0.00 0.00 2.78
1423 1477 0.955428 ACATGACATGCGCTCGGTTT 60.955 50.000 15.49 0.00 0.00 3.27
1424 1478 0.108377 TACATGACATGCGCTCGGTT 60.108 50.000 15.49 0.00 0.00 4.44
1425 1479 0.528466 CTACATGACATGCGCTCGGT 60.528 55.000 15.49 3.55 0.00 4.69
1426 1480 0.249031 TCTACATGACATGCGCTCGG 60.249 55.000 15.49 0.00 0.00 4.63
1427 1481 1.126890 CTCTACATGACATGCGCTCG 58.873 55.000 15.49 1.22 0.00 5.03
1428 1482 2.215907 ACTCTACATGACATGCGCTC 57.784 50.000 15.49 0.00 0.00 5.03
1429 1483 2.690497 AGTACTCTACATGACATGCGCT 59.310 45.455 15.49 0.00 0.00 5.92
1430 1484 3.046390 GAGTACTCTACATGACATGCGC 58.954 50.000 15.91 0.00 0.00 6.09
1431 1485 3.066760 TGGAGTACTCTACATGACATGCG 59.933 47.826 21.88 7.12 28.14 4.73
1432 1486 4.098654 AGTGGAGTACTCTACATGACATGC 59.901 45.833 32.92 10.12 42.60 4.06
1433 1487 5.843673 AGTGGAGTACTCTACATGACATG 57.156 43.478 32.92 14.02 42.60 3.21
1440 1494 9.863650 AGCTTTTATATAGTGGAGTACTCTACA 57.136 33.333 32.92 21.99 42.60 2.74
1443 1497 8.998277 TCAGCTTTTATATAGTGGAGTACTCT 57.002 34.615 21.88 5.62 40.89 3.24
1448 1502 7.659390 GCAGATTCAGCTTTTATATAGTGGAGT 59.341 37.037 0.00 0.00 0.00 3.85
1449 1503 7.877097 AGCAGATTCAGCTTTTATATAGTGGAG 59.123 37.037 0.00 0.00 39.87 3.86
1450 1504 7.658982 CAGCAGATTCAGCTTTTATATAGTGGA 59.341 37.037 0.11 0.00 41.14 4.02
1451 1505 7.094890 CCAGCAGATTCAGCTTTTATATAGTGG 60.095 40.741 0.11 0.00 41.14 4.00
1452 1506 7.443575 ACCAGCAGATTCAGCTTTTATATAGTG 59.556 37.037 0.11 0.00 41.14 2.74
1453 1507 7.512992 ACCAGCAGATTCAGCTTTTATATAGT 58.487 34.615 0.11 0.00 41.14 2.12
1454 1508 7.976135 ACCAGCAGATTCAGCTTTTATATAG 57.024 36.000 0.11 0.00 41.14 1.31
1455 1509 8.752005 AAACCAGCAGATTCAGCTTTTATATA 57.248 30.769 0.11 0.00 41.14 0.86
1456 1510 7.467811 CGAAACCAGCAGATTCAGCTTTTATAT 60.468 37.037 0.11 0.00 41.14 0.86
1457 1511 6.183360 CGAAACCAGCAGATTCAGCTTTTATA 60.183 38.462 0.11 0.00 41.14 0.98
1458 1512 5.392380 CGAAACCAGCAGATTCAGCTTTTAT 60.392 40.000 0.11 0.00 41.14 1.40
1459 1513 4.083324 CGAAACCAGCAGATTCAGCTTTTA 60.083 41.667 0.11 0.00 41.14 1.52
1460 1514 3.304928 CGAAACCAGCAGATTCAGCTTTT 60.305 43.478 0.11 1.02 41.14 2.27
1461 1515 2.227388 CGAAACCAGCAGATTCAGCTTT 59.773 45.455 0.11 0.00 41.14 3.51
1464 1518 0.179179 GCGAAACCAGCAGATTCAGC 60.179 55.000 0.00 0.00 34.19 4.26
1495 1549 3.306225 GCAACATCAACAACCCATCACAT 60.306 43.478 0.00 0.00 0.00 3.21
1496 1550 2.035704 GCAACATCAACAACCCATCACA 59.964 45.455 0.00 0.00 0.00 3.58
1497 1551 2.676076 GCAACATCAACAACCCATCAC 58.324 47.619 0.00 0.00 0.00 3.06
1498 1552 1.269174 CGCAACATCAACAACCCATCA 59.731 47.619 0.00 0.00 0.00 3.07
1499 1553 1.402720 CCGCAACATCAACAACCCATC 60.403 52.381 0.00 0.00 0.00 3.51
1500 1554 0.602562 CCGCAACATCAACAACCCAT 59.397 50.000 0.00 0.00 0.00 4.00
1501 1555 0.753479 ACCGCAACATCAACAACCCA 60.753 50.000 0.00 0.00 0.00 4.51
1502 1556 0.318614 CACCGCAACATCAACAACCC 60.319 55.000 0.00 0.00 0.00 4.11
1614 1688 3.349006 CACGCACAGGCAGGTGTC 61.349 66.667 10.39 3.41 40.89 3.67
1724 1798 1.448540 CAACGGCGAGGCAGAATCT 60.449 57.895 16.62 0.00 0.00 2.40
1787 1868 2.804828 AAGCGGCCAACCTGCTACTC 62.805 60.000 2.24 0.00 42.46 2.59
1788 1869 2.804828 GAAGCGGCCAACCTGCTACT 62.805 60.000 2.24 0.00 42.46 2.57
1789 1870 2.359975 AAGCGGCCAACCTGCTAC 60.360 61.111 2.24 0.00 42.46 3.58
1838 1919 5.010922 ACATACGTACTACAACAACCCAGAA 59.989 40.000 0.00 0.00 0.00 3.02
1853 1935 0.497265 GACGCATGCGACATACGTAC 59.503 55.000 43.72 18.62 44.60 3.67
1854 1936 0.593008 GGACGCATGCGACATACGTA 60.593 55.000 43.72 0.00 44.60 3.57
1855 1937 1.876714 GGACGCATGCGACATACGT 60.877 57.895 43.72 21.90 44.60 3.57
1856 1938 2.916556 CGGACGCATGCGACATACG 61.917 63.158 43.72 30.35 43.37 3.06
1930 2024 1.541310 TTCCAGGCCGTGAATCGAGT 61.541 55.000 5.95 0.00 42.86 4.18
1935 2029 1.671054 CGTGTTCCAGGCCGTGAAT 60.671 57.895 12.30 0.00 0.00 2.57
1942 2036 2.460757 TTACTAACCGTGTTCCAGGC 57.539 50.000 0.00 0.00 0.00 4.85
1954 2048 7.647715 ACATGCAACAAACTGTGATTTACTAAC 59.352 33.333 0.00 0.00 0.00 2.34
1955 2049 7.711846 ACATGCAACAAACTGTGATTTACTAA 58.288 30.769 0.00 0.00 0.00 2.24
1956 2050 7.270757 ACATGCAACAAACTGTGATTTACTA 57.729 32.000 0.00 0.00 0.00 1.82
1957 2051 6.147864 ACATGCAACAAACTGTGATTTACT 57.852 33.333 0.00 0.00 0.00 2.24
2020 2114 2.153469 GTACACGATATACTACGCGCG 58.847 52.381 30.96 30.96 0.00 6.86
2021 2115 3.402778 GAGTACACGATATACTACGCGC 58.597 50.000 5.73 0.00 32.93 6.86
2023 2117 5.062809 GGTAGGAGTACACGATATACTACGC 59.937 48.000 0.00 0.00 38.37 4.42
2031 2125 4.449131 CACTCAGGTAGGAGTACACGATA 58.551 47.826 0.00 0.00 46.05 2.92
2040 2134 2.427245 CGCCCCACTCAGGTAGGAG 61.427 68.421 0.00 0.00 40.79 3.69
2061 2155 0.601841 AACCAACACGACCATCGACC 60.602 55.000 5.04 0.00 43.74 4.79
2062 2156 0.511221 CAACCAACACGACCATCGAC 59.489 55.000 5.04 0.00 43.74 4.20
2063 2157 0.105224 ACAACCAACACGACCATCGA 59.895 50.000 5.04 0.00 43.74 3.59
2064 2158 0.941542 AACAACCAACACGACCATCG 59.058 50.000 0.00 0.00 46.93 3.84
2065 2159 2.032030 CAGAACAACCAACACGACCATC 60.032 50.000 0.00 0.00 0.00 3.51
2066 2160 1.946768 CAGAACAACCAACACGACCAT 59.053 47.619 0.00 0.00 0.00 3.55
2067 2161 1.374560 CAGAACAACCAACACGACCA 58.625 50.000 0.00 0.00 0.00 4.02
2217 2312 6.183360 GCGAGGGTTTCAAACATTTTTCTTTT 60.183 34.615 1.93 0.00 0.00 2.27
2229 2324 0.889186 GCAGAGGCGAGGGTTTCAAA 60.889 55.000 0.00 0.00 0.00 2.69
2242 2337 0.674581 TGCGTCCTTGAATGCAGAGG 60.675 55.000 0.00 0.00 32.73 3.69
2244 2339 0.250252 TGTGCGTCCTTGAATGCAGA 60.250 50.000 0.00 0.00 38.14 4.26
2245 2340 0.110056 GTGTGCGTCCTTGAATGCAG 60.110 55.000 0.00 0.00 38.14 4.41
2246 2341 0.817229 TGTGTGCGTCCTTGAATGCA 60.817 50.000 0.00 0.00 34.44 3.96
2247 2342 0.523072 ATGTGTGCGTCCTTGAATGC 59.477 50.000 0.00 0.00 0.00 3.56
2248 2343 1.131126 GGATGTGTGCGTCCTTGAATG 59.869 52.381 0.00 0.00 45.23 2.67
2249 2344 1.453155 GGATGTGTGCGTCCTTGAAT 58.547 50.000 0.00 0.00 45.23 2.57
2250 2345 2.927004 GGATGTGTGCGTCCTTGAA 58.073 52.632 0.00 0.00 45.23 2.69
2258 2354 4.880886 TTGATAAAGATGGATGTGTGCG 57.119 40.909 0.00 0.00 0.00 5.34
2266 2362 8.089625 TGTCAGACCTTATTGATAAAGATGGA 57.910 34.615 0.00 0.00 0.00 3.41
2283 2379 5.050091 CGATATGTATTTGCCTTGTCAGACC 60.050 44.000 0.00 0.00 0.00 3.85
2306 2402 9.804758 ACTAGAAAGATGACTTTAGGTTAATCG 57.195 33.333 0.00 0.00 44.97 3.34
2310 2406 8.311836 CACCACTAGAAAGATGACTTTAGGTTA 58.688 37.037 0.00 0.00 44.97 2.85
2330 2426 1.578583 GTGTAGCGACAAACACCACT 58.421 50.000 0.00 0.00 40.07 4.00
2334 2430 6.657836 ATTTATAGGTGTAGCGACAAACAC 57.342 37.500 0.00 1.21 44.19 3.32
2338 2434 7.466725 GCATCAAATTTATAGGTGTAGCGACAA 60.467 37.037 0.00 0.00 37.31 3.18
2343 2439 7.308229 CCAGAGCATCAAATTTATAGGTGTAGC 60.308 40.741 0.00 0.00 37.82 3.58
2353 2449 3.696051 GTCAGGCCAGAGCATCAAATTTA 59.304 43.478 5.01 0.00 42.56 1.40
2356 2452 1.684248 GGTCAGGCCAGAGCATCAAAT 60.684 52.381 21.18 0.00 42.56 2.32
2363 2459 1.986757 TCTGAGGTCAGGCCAGAGC 60.987 63.158 18.83 18.83 43.91 4.09
2364 2460 1.896694 GTCTGAGGTCAGGCCAGAG 59.103 63.158 5.01 0.00 42.47 3.35
2373 2469 2.146342 CATGTGTGTTGGTCTGAGGTC 58.854 52.381 0.00 0.00 0.00 3.85
2392 2488 1.204146 GAGGCCACCAGATTAGACCA 58.796 55.000 5.01 0.00 0.00 4.02
2393 2489 1.134371 GTGAGGCCACCAGATTAGACC 60.134 57.143 5.01 0.00 37.33 3.85
2394 2490 2.317530 GTGAGGCCACCAGATTAGAC 57.682 55.000 5.01 0.00 37.33 2.59
2430 2526 3.119096 GGTTGGCGCTCTCGGTTC 61.119 66.667 7.64 0.00 35.95 3.62
2441 2537 1.448013 GTCTGCTAGACCGGTTGGC 60.448 63.158 9.42 14.30 39.28 4.52
2443 2539 1.178276 AGAGTCTGCTAGACCGGTTG 58.822 55.000 9.42 3.40 46.18 3.77
2447 2543 1.003331 CGCTAAGAGTCTGCTAGACCG 60.003 57.143 11.24 4.99 46.18 4.79
2474 2570 0.952984 GATTCTAGAGCGGGGCATGC 60.953 60.000 9.90 9.90 0.00 4.06
2482 2578 1.663074 GGCAGCGGATTCTAGAGCG 60.663 63.158 0.00 0.00 34.34 5.03
2483 2579 0.179073 TTGGCAGCGGATTCTAGAGC 60.179 55.000 0.00 0.00 0.00 4.09
2488 2585 0.254178 AGATGTTGGCAGCGGATTCT 59.746 50.000 0.00 0.00 35.92 2.40
2491 2588 0.749454 GGAAGATGTTGGCAGCGGAT 60.749 55.000 0.00 0.00 35.92 4.18
2495 2592 1.796796 GACGGAAGATGTTGGCAGC 59.203 57.895 0.00 0.00 0.00 5.25
2501 2598 1.134560 GCTAGGACGACGGAAGATGTT 59.865 52.381 0.00 0.00 0.00 2.71
2520 2617 0.744771 GTGTTGATCCCTCCCGAAGC 60.745 60.000 0.00 0.00 0.00 3.86
2522 2619 1.285280 ATGTGTTGATCCCTCCCGAA 58.715 50.000 0.00 0.00 0.00 4.30
2533 2630 1.955778 CTGGCAAGGACAATGTGTTGA 59.044 47.619 8.73 0.00 38.71 3.18
2550 2647 2.983592 GACAACGGTTGGGCCTGG 60.984 66.667 23.51 0.00 34.25 4.45
2551 2648 3.353836 CGACAACGGTTGGGCCTG 61.354 66.667 23.51 5.88 35.72 4.85
2560 2657 0.309302 TTGTTTGGCATCGACAACGG 59.691 50.000 7.30 0.00 40.21 4.44
2561 2658 1.394697 GTTGTTTGGCATCGACAACG 58.605 50.000 19.28 0.00 42.29 4.10
2564 2661 1.281353 GCGTTGTTTGGCATCGACA 59.719 52.632 0.00 3.83 41.39 4.35
2570 2667 2.123988 GATCGTGGCGTTGTTTGGCA 62.124 55.000 0.00 0.00 39.86 4.92
2572 2669 1.154488 CGATCGTGGCGTTGTTTGG 60.154 57.895 7.03 0.00 0.00 3.28
2586 2694 2.860628 GATGGACGCACGCACGATC 61.861 63.158 4.54 0.00 36.70 3.69
2590 2698 2.173382 GTTGATGGACGCACGCAC 59.827 61.111 0.00 0.00 0.00 5.34
2599 2707 1.667236 GATGGATGCGTGTTGATGGA 58.333 50.000 0.00 0.00 0.00 3.41
2609 2717 3.032609 GTCTCGGCGATGGATGCG 61.033 66.667 11.27 0.00 0.00 4.73
2621 2729 0.456221 AATGGCGTAGTGGAGTCTCG 59.544 55.000 0.00 0.00 0.00 4.04
2632 2740 1.430632 GTCTCGACGGAATGGCGTA 59.569 57.895 0.00 0.00 0.00 4.42
2655 2763 0.846401 CATCTACCGCATCAACGACG 59.154 55.000 0.00 0.00 34.06 5.12
2657 2765 0.174617 TGCATCTACCGCATCAACGA 59.825 50.000 0.00 0.00 33.55 3.85
2661 2769 1.473257 GGTCTTGCATCTACCGCATCA 60.473 52.381 0.00 0.00 39.58 3.07
2678 2786 2.035442 GCCAAGAGGTGAAGCGGTC 61.035 63.158 0.00 0.00 37.19 4.79
2681 2789 2.747855 GGGCCAAGAGGTGAAGCG 60.748 66.667 4.39 0.00 37.19 4.68
2685 2793 3.003173 CGGAGGGCCAAGAGGTGA 61.003 66.667 6.18 0.00 37.19 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.