Multiple sequence alignment - TraesCS5D01G234200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G234200 chr5D 100.000 4595 0 0 1 4595 341534141 341529547 0.000000e+00 8486.0
1 TraesCS5D01G234200 chr5D 92.092 1530 99 10 1762 3284 341242757 341241243 0.000000e+00 2135.0
2 TraesCS5D01G234200 chr5D 88.954 1530 150 9 1773 3286 556722664 556721138 0.000000e+00 1871.0
3 TraesCS5D01G234200 chr5D 87.533 1131 121 6 2156 3286 560107204 560106094 0.000000e+00 1290.0
4 TraesCS5D01G234200 chr5D 84.824 626 87 5 1759 2377 341261500 341260876 1.400000e-174 623.0
5 TraesCS5D01G234200 chr5D 97.799 318 6 1 4279 4595 904449 904132 8.690000e-152 547.0
6 TraesCS5D01G234200 chr5D 98.083 313 6 0 4283 4595 336269687 336269999 3.130000e-151 545.0
7 TraesCS5D01G234200 chr5D 95.015 341 13 4 4257 4595 295810940 295811278 2.430000e-147 532.0
8 TraesCS5D01G234200 chr5D 87.838 444 45 3 2834 3277 341075702 341075268 3.170000e-141 512.0
9 TraesCS5D01G234200 chr5D 86.364 352 48 0 1776 2127 560107722 560107371 7.210000e-103 385.0
10 TraesCS5D01G234200 chr5D 80.726 441 55 18 842 1270 341246160 341245738 2.670000e-82 316.0
11 TraesCS5D01G234200 chr5D 82.306 373 36 19 840 1202 560108305 560107953 3.480000e-76 296.0
12 TraesCS5D01G234200 chr5D 82.440 336 46 11 855 1182 341311951 341311621 9.730000e-72 281.0
13 TraesCS5D01G234200 chr5D 90.640 203 17 2 993 1195 556723261 556723061 7.580000e-68 268.0
14 TraesCS5D01G234200 chr5D 87.129 202 26 0 3049 3250 341051173 341050972 3.580000e-56 230.0
15 TraesCS5D01G234200 chr5D 84.141 227 32 2 3613 3839 260866342 260866120 2.780000e-52 217.0
16 TraesCS5D01G234200 chr5D 89.157 166 13 4 1021 1185 341078840 341078679 7.800000e-48 202.0
17 TraesCS5D01G234200 chr5D 77.011 261 54 5 3943 4201 535856167 535856423 1.330000e-30 145.0
18 TraesCS5D01G234200 chr5B 93.547 3394 128 37 266 3619 401000613 400997271 0.000000e+00 4970.0
19 TraesCS5D01G234200 chr5B 90.588 1530 101 15 1762 3284 400776651 400778144 0.000000e+00 1988.0
20 TraesCS5D01G234200 chr5B 85.272 1487 185 16 1804 3277 400564243 400562778 0.000000e+00 1502.0
21 TraesCS5D01G234200 chr5B 80.132 453 54 24 839 1270 400773032 400773469 5.780000e-79 305.0
22 TraesCS5D01G234200 chr5B 84.018 219 31 2 3613 3830 58333951 58333736 1.680000e-49 207.0
23 TraesCS5D01G234200 chr5B 86.154 195 16 9 1012 1195 400566254 400566060 2.800000e-47 200.0
24 TraesCS5D01G234200 chr5B 96.774 62 2 0 1 62 401002897 401002836 2.260000e-18 104.0
25 TraesCS5D01G234200 chr5A 95.594 2542 96 9 1749 4282 442681615 442679082 0.000000e+00 4060.0
26 TraesCS5D01G234200 chr5A 91.464 1523 113 8 1766 3284 442506070 442504561 0.000000e+00 2076.0
27 TraesCS5D01G234200 chr5A 91.103 1034 48 15 266 1275 442683154 442682141 0.000000e+00 1360.0
28 TraesCS5D01G234200 chr5A 84.351 1048 143 13 1805 2838 442292346 442291306 0.000000e+00 1007.0
29 TraesCS5D01G234200 chr5A 87.719 456 47 3 2834 3289 442291222 442290776 1.460000e-144 523.0
30 TraesCS5D01G234200 chr5A 88.136 354 36 4 3925 4276 477063013 477063362 2.560000e-112 416.0
31 TraesCS5D01G234200 chr5A 79.956 454 52 24 842 1270 442509379 442508940 9.660000e-77 298.0
32 TraesCS5D01G234200 chr5A 83.594 256 28 8 1325 1574 442682060 442681813 1.290000e-55 228.0
33 TraesCS5D01G234200 chr4A 88.654 1516 138 13 1803 3286 605086907 605085394 0.000000e+00 1816.0
34 TraesCS5D01G234200 chr4A 94.512 164 9 0 1032 1195 605087319 605087156 2.120000e-63 254.0
35 TraesCS5D01G234200 chr7D 98.403 313 5 0 4283 4595 383024813 383025125 6.720000e-153 551.0
36 TraesCS5D01G234200 chr7D 83.929 224 31 3 3613 3836 635668201 635667983 4.660000e-50 209.0
37 TraesCS5D01G234200 chr6D 97.792 317 7 0 4279 4595 428537357 428537041 8.690000e-152 547.0
38 TraesCS5D01G234200 chr4D 98.083 313 6 0 4283 4595 8121392 8121080 3.130000e-151 545.0
39 TraesCS5D01G234200 chr4D 86.996 223 25 3 3617 3839 474702520 474702302 9.870000e-62 248.0
40 TraesCS5D01G234200 chr4D 82.101 257 42 4 2942 3196 405774759 405775013 2.780000e-52 217.0
41 TraesCS5D01G234200 chr3D 98.083 313 6 0 4283 4595 11485823 11486135 3.130000e-151 545.0
42 TraesCS5D01G234200 chr3D 84.807 362 48 5 3924 4282 575031056 575030699 1.570000e-94 357.0
43 TraesCS5D01G234200 chr3D 83.425 362 50 8 3925 4282 386426478 386426833 1.230000e-85 327.0
44 TraesCS5D01G234200 chr2D 98.083 313 6 0 4283 4595 89319777 89320089 3.130000e-151 545.0
45 TraesCS5D01G234200 chr2D 76.316 342 69 11 3946 4282 586929883 586929549 6.110000e-39 172.0
46 TraesCS5D01G234200 chr2D 75.953 341 71 10 3946 4282 323117624 323117291 1.020000e-36 165.0
47 TraesCS5D01G234200 chr2D 72.414 348 78 12 3943 4282 94725098 94725435 1.360000e-15 95.3
48 TraesCS5D01G234200 chr1D 98.083 313 6 0 4283 4595 367291611 367291299 3.130000e-151 545.0
49 TraesCS5D01G234200 chr1D 74.386 285 63 9 2919 3198 432338407 432338128 3.760000e-21 113.0
50 TraesCS5D01G234200 chr3B 85.352 355 45 6 3924 4276 372289371 372289720 1.220000e-95 361.0
51 TraesCS5D01G234200 chr3B 78.933 356 59 12 3928 4276 485212911 485212565 1.290000e-55 228.0
52 TraesCS5D01G234200 chr1A 83.146 356 48 9 3928 4282 255682720 255682376 9.600000e-82 315.0
53 TraesCS5D01G234200 chr1A 84.279 229 31 4 3612 3840 510910730 510910507 7.740000e-53 219.0
54 TraesCS5D01G234200 chr1A 74.648 284 62 9 2919 3197 530810910 530810632 2.900000e-22 117.0
55 TraesCS5D01G234200 chr4B 86.463 229 23 8 3613 3839 42938374 42938152 1.280000e-60 244.0
56 TraesCS5D01G234200 chr4B 82.101 257 42 4 2942 3196 504943850 504944104 2.780000e-52 217.0
57 TraesCS5D01G234200 chr7A 83.772 228 34 3 3613 3839 589116769 589116994 3.600000e-51 213.0
58 TraesCS5D01G234200 chr3A 82.969 229 34 3 3613 3840 717291320 717291544 7.800000e-48 202.0
59 TraesCS5D01G234200 chr3A 75.073 341 75 6 3946 4282 692967455 692967121 2.860000e-32 150.0
60 TraesCS5D01G234200 chrUn 75.219 343 71 13 3946 4282 26512466 26512132 2.860000e-32 150.0
61 TraesCS5D01G234200 chr7B 91.837 49 4 0 4231 4279 65295458 65295506 8.250000e-08 69.4
62 TraesCS5D01G234200 chr7B 92.683 41 3 0 4236 4276 251684901 251684861 4.960000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G234200 chr5D 341529547 341534141 4594 True 8486.000000 8486 100.0000 1 4595 1 chr5D.!!$R6 4594
1 TraesCS5D01G234200 chr5D 341241243 341246160 4917 True 1225.500000 2135 86.4090 842 3284 2 chr5D.!!$R8 2442
2 TraesCS5D01G234200 chr5D 556721138 556723261 2123 True 1069.500000 1871 89.7970 993 3286 2 chr5D.!!$R9 2293
3 TraesCS5D01G234200 chr5D 560106094 560108305 2211 True 657.000000 1290 85.4010 840 3286 3 chr5D.!!$R10 2446
4 TraesCS5D01G234200 chr5D 341260876 341261500 624 True 623.000000 623 84.8240 1759 2377 1 chr5D.!!$R4 618
5 TraesCS5D01G234200 chr5D 341075268 341078840 3572 True 357.000000 512 88.4975 1021 3277 2 chr5D.!!$R7 2256
6 TraesCS5D01G234200 chr5B 400997271 401002897 5626 True 2537.000000 4970 95.1605 1 3619 2 chr5B.!!$R3 3618
7 TraesCS5D01G234200 chr5B 400773032 400778144 5112 False 1146.500000 1988 85.3600 839 3284 2 chr5B.!!$F1 2445
8 TraesCS5D01G234200 chr5B 400562778 400566254 3476 True 851.000000 1502 85.7130 1012 3277 2 chr5B.!!$R2 2265
9 TraesCS5D01G234200 chr5A 442679082 442683154 4072 True 1882.666667 4060 90.0970 266 4282 3 chr5A.!!$R3 4016
10 TraesCS5D01G234200 chr5A 442504561 442509379 4818 True 1187.000000 2076 85.7100 842 3284 2 chr5A.!!$R2 2442
11 TraesCS5D01G234200 chr5A 442290776 442292346 1570 True 765.000000 1007 86.0350 1805 3289 2 chr5A.!!$R1 1484
12 TraesCS5D01G234200 chr4A 605085394 605087319 1925 True 1035.000000 1816 91.5830 1032 3286 2 chr4A.!!$R1 2254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 2128 0.326595 TGCTTGGCGGGAATCTTGTA 59.673 50.0 0.00 0.00 0.00 2.41 F
1365 4274 0.318869 CCGAAAGCTGCAAACATGCA 60.319 50.0 1.02 3.23 43.22 3.96 F
1932 9141 1.048724 CCGCCTTCACCTCCATCCTA 61.049 60.0 0.00 0.00 0.00 2.94 F
3327 10803 0.445436 CAGGAGCTGATTGCAACGTC 59.555 55.0 0.00 0.00 45.94 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 9141 1.209747 GAGACTTGGCCGGAAAGGTAT 59.790 52.381 18.38 4.41 43.70 2.73 R
3302 10778 1.340697 TGCAATCAGCTCCTGCAAGAT 60.341 47.619 10.64 0.00 42.84 2.40 R
3399 10875 0.671781 GCCCTGCGCATGGTATCTAG 60.672 60.000 28.97 11.83 37.47 2.43 R
4543 12023 0.107361 GATCCAAAACCCGACCCGAT 60.107 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.569250 CGTAGGGGACAACAAAAATGG 57.431 47.619 0.00 0.00 0.00 3.16
49 50 2.103941 GGGACAACAAAAATGGCCTTGA 59.896 45.455 3.32 0.00 45.88 3.02
77 2112 5.018809 ACATAAGATGTTTGGGTGAATGCT 58.981 37.500 0.00 0.00 41.63 3.79
82 2117 0.667184 GTTTGGGTGAATGCTTGGCG 60.667 55.000 0.00 0.00 0.00 5.69
93 2128 0.326595 TGCTTGGCGGGAATCTTGTA 59.673 50.000 0.00 0.00 0.00 2.41
95 2130 1.604278 GCTTGGCGGGAATCTTGTATC 59.396 52.381 0.00 0.00 0.00 2.24
101 2136 2.223971 GCGGGAATCTTGTATCGAGGAA 60.224 50.000 0.00 0.00 0.00 3.36
102 2137 3.740141 GCGGGAATCTTGTATCGAGGAAA 60.740 47.826 0.00 0.00 0.00 3.13
134 2172 4.612264 ACTGCATGGCTGAATTTTTCTT 57.388 36.364 0.00 0.00 0.00 2.52
152 2230 2.300152 TCTTTCTTGTGTCGAGGCTGAT 59.700 45.455 0.00 0.00 0.00 2.90
153 2231 2.084610 TTCTTGTGTCGAGGCTGATG 57.915 50.000 0.00 0.00 0.00 3.07
165 2243 3.976339 GCTGATGATGTAGCCGTCT 57.024 52.632 0.00 0.00 33.89 4.18
189 2269 4.900054 GCTGAACTCTATTCCCTACCCTAA 59.100 45.833 0.00 0.00 0.00 2.69
194 2274 6.296435 ACTCTATTCCCTACCCTAAGATGT 57.704 41.667 0.00 0.00 0.00 3.06
200 2280 4.030913 TCCCTACCCTAAGATGTTCTGTG 58.969 47.826 0.00 0.00 0.00 3.66
205 2285 4.899502 ACCCTAAGATGTTCTGTGTGAAG 58.100 43.478 0.00 0.00 35.01 3.02
206 2286 4.256920 CCCTAAGATGTTCTGTGTGAAGG 58.743 47.826 0.00 0.00 35.01 3.46
207 2287 4.263068 CCCTAAGATGTTCTGTGTGAAGGT 60.263 45.833 0.00 0.00 35.01 3.50
208 2288 4.692625 CCTAAGATGTTCTGTGTGAAGGTG 59.307 45.833 0.00 0.00 35.01 4.00
209 2289 3.845781 AGATGTTCTGTGTGAAGGTGT 57.154 42.857 0.00 0.00 35.01 4.16
210 2290 4.156455 AGATGTTCTGTGTGAAGGTGTT 57.844 40.909 0.00 0.00 35.01 3.32
211 2291 4.526970 AGATGTTCTGTGTGAAGGTGTTT 58.473 39.130 0.00 0.00 35.01 2.83
212 2292 4.949856 AGATGTTCTGTGTGAAGGTGTTTT 59.050 37.500 0.00 0.00 35.01 2.43
213 2293 4.695217 TGTTCTGTGTGAAGGTGTTTTC 57.305 40.909 0.00 0.00 35.01 2.29
214 2294 4.075682 TGTTCTGTGTGAAGGTGTTTTCA 58.924 39.130 0.00 0.00 35.01 2.69
215 2295 4.704540 TGTTCTGTGTGAAGGTGTTTTCAT 59.295 37.500 0.00 0.00 39.13 2.57
216 2296 4.898829 TCTGTGTGAAGGTGTTTTCATG 57.101 40.909 0.00 0.00 39.13 3.07
217 2297 3.066621 TCTGTGTGAAGGTGTTTTCATGC 59.933 43.478 0.00 0.00 39.13 4.06
218 2298 3.023119 TGTGTGAAGGTGTTTTCATGCT 58.977 40.909 0.00 0.00 39.13 3.79
219 2299 4.203226 TGTGTGAAGGTGTTTTCATGCTA 58.797 39.130 0.00 0.00 39.13 3.49
220 2300 4.826733 TGTGTGAAGGTGTTTTCATGCTAT 59.173 37.500 0.00 0.00 39.13 2.97
221 2301 5.048782 TGTGTGAAGGTGTTTTCATGCTATC 60.049 40.000 0.00 0.00 39.13 2.08
222 2302 5.048782 GTGTGAAGGTGTTTTCATGCTATCA 60.049 40.000 0.00 0.00 39.13 2.15
223 2303 5.711506 TGTGAAGGTGTTTTCATGCTATCAT 59.288 36.000 0.00 0.00 39.13 2.45
224 2304 6.209192 TGTGAAGGTGTTTTCATGCTATCATT 59.791 34.615 0.00 0.00 39.13 2.57
225 2305 6.529125 GTGAAGGTGTTTTCATGCTATCATTG 59.471 38.462 0.00 0.00 39.13 2.82
226 2306 6.209192 TGAAGGTGTTTTCATGCTATCATTGT 59.791 34.615 0.00 0.00 32.39 2.71
227 2307 6.594788 AGGTGTTTTCATGCTATCATTGTT 57.405 33.333 0.00 0.00 0.00 2.83
228 2308 6.624423 AGGTGTTTTCATGCTATCATTGTTC 58.376 36.000 0.00 0.00 0.00 3.18
229 2309 6.209192 AGGTGTTTTCATGCTATCATTGTTCA 59.791 34.615 0.00 0.00 0.00 3.18
230 2310 7.037438 GGTGTTTTCATGCTATCATTGTTCAT 58.963 34.615 0.00 0.00 0.00 2.57
231 2311 7.546667 GGTGTTTTCATGCTATCATTGTTCATT 59.453 33.333 0.00 0.00 0.00 2.57
232 2312 8.377681 GTGTTTTCATGCTATCATTGTTCATTG 58.622 33.333 0.00 0.00 0.00 2.82
233 2313 8.089597 TGTTTTCATGCTATCATTGTTCATTGT 58.910 29.630 0.00 0.00 0.00 2.71
234 2314 8.928733 GTTTTCATGCTATCATTGTTCATTGTT 58.071 29.630 0.00 0.00 0.00 2.83
235 2315 9.491675 TTTTCATGCTATCATTGTTCATTGTTT 57.508 25.926 0.00 0.00 0.00 2.83
236 2316 9.491675 TTTCATGCTATCATTGTTCATTGTTTT 57.508 25.926 0.00 0.00 0.00 2.43
237 2317 9.491675 TTCATGCTATCATTGTTCATTGTTTTT 57.508 25.926 0.00 0.00 0.00 1.94
238 2318 8.927721 TCATGCTATCATTGTTCATTGTTTTTG 58.072 29.630 0.00 0.00 0.00 2.44
239 2319 8.927721 CATGCTATCATTGTTCATTGTTTTTGA 58.072 29.630 0.00 0.00 0.00 2.69
240 2320 9.661563 ATGCTATCATTGTTCATTGTTTTTGAT 57.338 25.926 0.00 0.00 0.00 2.57
245 2325 8.254178 TCATTGTTCATTGTTTTTGATATGGC 57.746 30.769 0.00 0.00 0.00 4.40
246 2326 8.095792 TCATTGTTCATTGTTTTTGATATGGCT 58.904 29.630 0.00 0.00 0.00 4.75
247 2327 8.723311 CATTGTTCATTGTTTTTGATATGGCTT 58.277 29.630 0.00 0.00 0.00 4.35
248 2328 9.941325 ATTGTTCATTGTTTTTGATATGGCTTA 57.059 25.926 0.00 0.00 0.00 3.09
249 2329 8.755696 TGTTCATTGTTTTTGATATGGCTTAC 57.244 30.769 0.00 0.00 0.00 2.34
250 2330 8.584157 TGTTCATTGTTTTTGATATGGCTTACT 58.416 29.630 0.00 0.00 0.00 2.24
253 2333 9.461312 TCATTGTTTTTGATATGGCTTACTACT 57.539 29.630 0.00 0.00 0.00 2.57
254 2334 9.722056 CATTGTTTTTGATATGGCTTACTACTC 57.278 33.333 0.00 0.00 0.00 2.59
255 2335 8.856153 TTGTTTTTGATATGGCTTACTACTCA 57.144 30.769 0.00 0.00 0.00 3.41
256 2336 9.461312 TTGTTTTTGATATGGCTTACTACTCAT 57.539 29.630 0.00 0.00 0.00 2.90
257 2337 8.892723 TGTTTTTGATATGGCTTACTACTCATG 58.107 33.333 0.00 0.00 0.00 3.07
258 2338 7.496529 TTTTGATATGGCTTACTACTCATGC 57.503 36.000 0.00 0.00 0.00 4.06
259 2339 5.152623 TGATATGGCTTACTACTCATGCC 57.847 43.478 0.00 0.00 43.49 4.40
263 2343 3.268023 GGCTTACTACTCATGCCAAGT 57.732 47.619 0.00 0.00 42.79 3.16
264 2344 2.939103 GGCTTACTACTCATGCCAAGTG 59.061 50.000 0.00 0.00 42.79 3.16
271 2351 2.387757 ACTCATGCCAAGTGGTGTTTT 58.612 42.857 0.00 0.00 37.57 2.43
301 2381 3.755628 GCGTGTAGCGACCCCTGA 61.756 66.667 0.00 0.00 44.77 3.86
313 2393 2.772287 GACCCCTGACTCTGAAACAAG 58.228 52.381 0.00 0.00 0.00 3.16
367 2463 5.664294 TGACAAGGCTGCATTATTGAAAT 57.336 34.783 0.00 0.00 0.00 2.17
585 2689 2.739943 CCCCTGATCGCTATATGGAGA 58.260 52.381 0.00 0.00 0.00 3.71
599 2703 7.227512 CGCTATATGGAGAGAAATTCTTTTGGT 59.772 37.037 0.00 0.00 35.87 3.67
606 2710 6.149640 GGAGAGAAATTCTTTTGGTCTGTACC 59.850 42.308 0.00 0.00 40.51 3.34
675 2787 2.347490 CCGGTGTGGGACTCCTTG 59.653 66.667 0.00 0.00 29.93 3.61
796 2910 3.017323 CCTTGATGGCGCGATCAC 58.983 61.111 31.18 9.27 31.92 3.06
935 3068 0.588233 CAAAAGCTAGCTCGCGCATG 60.588 55.000 19.65 7.28 39.10 4.06
980 3132 3.486383 CTCTTGTTCCTTGGGCTTAACA 58.514 45.455 0.00 0.00 0.00 2.41
1209 3392 1.343075 ACCCACCTAGCTAGCTTGCTA 60.343 52.381 24.88 25.04 43.74 3.49
1240 3431 6.593268 AACAATCATGATCATGTTGTTCCA 57.407 33.333 34.23 20.51 42.35 3.53
1243 3434 6.183360 ACAATCATGATCATGTTGTTCCATCC 60.183 38.462 30.28 0.00 38.56 3.51
1258 3450 8.576442 GTTGTTCCATCCTTTTCTTTTATCTCA 58.424 33.333 0.00 0.00 0.00 3.27
1275 3471 1.185618 TCAGTCGAGTCACTTGGGGG 61.186 60.000 0.00 0.00 0.00 5.40
1281 4177 0.690762 GAGTCACTTGGGGGCAACTA 59.309 55.000 0.00 0.00 0.00 2.24
1364 4273 1.620413 GCCGAAAGCTGCAAACATGC 61.620 55.000 1.02 0.00 38.99 4.06
1365 4274 0.318869 CCGAAAGCTGCAAACATGCA 60.319 50.000 1.02 3.23 43.22 3.96
1433 4539 2.698803 AGACATTCACAACGCATGCTA 58.301 42.857 17.13 0.00 0.00 3.49
1449 4555 5.120363 CGCATGCTATTAGACGACTAGTAGA 59.880 44.000 22.05 11.42 39.61 2.59
1487 4593 1.748122 CAGTGCCAGTGCCAGATCC 60.748 63.158 0.00 0.00 36.33 3.36
1582 5263 5.673068 GCGATCGAGTTCTAGACAACTTGTA 60.673 44.000 21.57 1.22 38.49 2.41
1585 5266 8.121086 CGATCGAGTTCTAGACAACTTGTAATA 58.879 37.037 10.26 0.00 38.49 0.98
1713 5815 3.517296 TCAGACAATGGTTTGGGCTAA 57.483 42.857 0.00 0.00 37.15 3.09
1797 9006 2.672874 TGTCTCACTTGTTGCGCATATC 59.327 45.455 12.75 5.82 0.00 1.63
1799 9008 1.926510 CTCACTTGTTGCGCATATCGA 59.073 47.619 12.75 4.18 41.67 3.59
1830 9039 1.378762 CACCATGGACCCGTTCCTT 59.621 57.895 21.47 0.00 46.10 3.36
1884 9093 3.117512 AGAACTTGGTGACCCTGAACAAT 60.118 43.478 0.00 0.00 0.00 2.71
1932 9141 1.048724 CCGCCTTCACCTCCATCCTA 61.049 60.000 0.00 0.00 0.00 2.94
2136 9356 3.614092 CAATCAGGTGTGGTAAGCTCAT 58.386 45.455 0.00 0.00 0.00 2.90
2145 9370 3.057734 GTGGTAAGCTCATACATACGGC 58.942 50.000 0.00 0.00 0.00 5.68
3302 10778 3.151710 CGGCCGTGGGGATAGTGA 61.152 66.667 19.50 0.00 34.06 3.41
3327 10803 0.445436 CAGGAGCTGATTGCAACGTC 59.555 55.000 0.00 0.00 45.94 4.34
3352 10828 6.457392 CCACAAGTGAAGATCATTATCAACGG 60.457 42.308 0.94 0.00 34.28 4.44
3356 10832 6.045318 AGTGAAGATCATTATCAACGGACAG 58.955 40.000 0.00 0.00 34.28 3.51
3538 11016 4.720046 TGCCAGTTTGTGTATTTGACCTA 58.280 39.130 0.00 0.00 0.00 3.08
3627 11105 7.116948 CGGATCACTAAGCATGTAATTTAGAGG 59.883 40.741 12.28 6.82 0.00 3.69
3648 11126 7.450074 AGAGGTGACAAAAATGTATGTCTACA 58.550 34.615 7.35 0.00 44.86 2.74
3651 11129 9.733556 AGGTGACAAAAATGTATGTCTACAATA 57.266 29.630 7.35 0.00 44.86 1.90
3708 11186 8.871629 TTAGCTATTCCTAAAAACATGGTGAA 57.128 30.769 0.00 0.00 0.00 3.18
3710 11188 7.602753 AGCTATTCCTAAAAACATGGTGAAAC 58.397 34.615 0.00 0.00 0.00 2.78
3721 11199 5.902613 ACATGGTGAAACATATTGTCCTG 57.097 39.130 0.00 0.00 39.98 3.86
3722 11200 5.569355 ACATGGTGAAACATATTGTCCTGA 58.431 37.500 0.00 0.00 39.98 3.86
3727 11205 6.070021 TGGTGAAACATATTGTCCTGAGAGAT 60.070 38.462 0.00 0.00 39.98 2.75
3731 11209 7.930325 TGAAACATATTGTCCTGAGAGATCATC 59.070 37.037 0.00 0.00 0.00 2.92
3794 11272 7.770897 TCTCTTTCCTTCACCTTAGCATTTATC 59.229 37.037 0.00 0.00 0.00 1.75
3802 11280 6.811954 TCACCTTAGCATTTATCATACGTGA 58.188 36.000 0.00 0.00 39.04 4.35
3819 11297 8.400947 TCATACGTGACACTCCTAAAATAGTAC 58.599 37.037 0.00 0.00 0.00 2.73
3824 11302 7.010183 CGTGACACTCCTAAAATAGTACCATTG 59.990 40.741 3.68 0.00 0.00 2.82
3910 11388 1.991264 GACCCTTTTTCTCGCTCGTAC 59.009 52.381 0.00 0.00 0.00 3.67
3915 11393 3.121445 CCTTTTTCTCGCTCGTACAGTTC 59.879 47.826 0.00 0.00 0.00 3.01
3930 11408 8.792831 TCGTACAGTTCTTTAAACTACTCTTG 57.207 34.615 0.00 0.00 0.00 3.02
3937 11415 8.182227 AGTTCTTTAAACTACTCTTGTTTGTGC 58.818 33.333 0.00 0.00 38.02 4.57
3953 11431 3.500448 TGTGCTGTGATTCAAGGGTTA 57.500 42.857 0.00 0.00 0.00 2.85
3965 11443 1.967066 CAAGGGTTATGTTTGGGCACA 59.033 47.619 0.00 0.00 0.00 4.57
3976 11454 5.132897 TGTTTGGGCACAGTTGATATTTC 57.867 39.130 0.00 0.00 0.00 2.17
4016 11494 6.586344 TGTCATCATCCTCATTCCTAAAGTC 58.414 40.000 0.00 0.00 0.00 3.01
4024 11502 1.401905 CATTCCTAAAGTCAAGGGCGC 59.598 52.381 0.00 0.00 34.66 6.53
4029 11507 1.823169 TAAAGTCAAGGGCGCGGACT 61.823 55.000 20.16 20.16 43.35 3.85
4047 11526 4.931601 CGGACTTGATCTTCAATTCAGACA 59.068 41.667 9.04 0.00 37.66 3.41
4076 11555 6.097696 TGCCCTTATTAATAACTTTGGGAAGC 59.902 38.462 24.48 14.71 36.29 3.86
4077 11556 6.462487 GCCCTTATTAATAACTTTGGGAAGCC 60.462 42.308 24.48 10.23 36.29 4.35
4078 11557 6.041637 CCCTTATTAATAACTTTGGGAAGCCC 59.958 42.308 18.99 0.00 45.71 5.19
4123 11603 1.221414 GTCTCTCACCTGTTGCACAC 58.779 55.000 0.00 0.00 0.00 3.82
4132 11612 1.419374 CTGTTGCACACCGTACTCTC 58.581 55.000 0.00 0.00 0.00 3.20
4146 11626 4.276431 CCGTACTCTCTTCCCTTATCAGTC 59.724 50.000 0.00 0.00 0.00 3.51
4176 11656 0.106519 AAAGGGCGATTCATCCTGGG 60.107 55.000 0.00 0.00 0.00 4.45
4188 11668 3.076350 TCCTGGGCGGAGTTCTTTA 57.924 52.632 0.00 0.00 36.69 1.85
4249 11729 4.702131 ACCAAAGCAGTAATCCTTAAGCTG 59.298 41.667 0.00 0.00 31.62 4.24
4278 11758 4.021456 TGAGAAAGCTTATGACTCGGTCAA 60.021 41.667 0.00 0.00 45.96 3.18
4282 11762 2.939103 AGCTTATGACTCGGTCAATTGC 59.061 45.455 10.17 12.65 45.96 3.56
4283 11763 2.677836 GCTTATGACTCGGTCAATTGCA 59.322 45.455 10.17 0.00 45.96 4.08
4284 11764 3.485877 GCTTATGACTCGGTCAATTGCAC 60.486 47.826 10.17 0.10 45.96 4.57
4285 11765 2.479566 ATGACTCGGTCAATTGCACT 57.520 45.000 10.17 0.00 45.96 4.40
4286 11766 3.610040 ATGACTCGGTCAATTGCACTA 57.390 42.857 10.17 0.00 45.96 2.74
4287 11767 2.683968 TGACTCGGTCAATTGCACTAC 58.316 47.619 0.00 0.00 39.78 2.73
4288 11768 2.036604 TGACTCGGTCAATTGCACTACA 59.963 45.455 0.00 0.00 39.78 2.74
4289 11769 3.064207 GACTCGGTCAATTGCACTACAA 58.936 45.455 0.00 0.00 36.14 2.41
4290 11770 3.472652 ACTCGGTCAATTGCACTACAAA 58.527 40.909 0.00 0.00 42.86 2.83
4291 11771 3.880490 ACTCGGTCAATTGCACTACAAAA 59.120 39.130 0.00 0.00 42.86 2.44
4292 11772 4.336993 ACTCGGTCAATTGCACTACAAAAA 59.663 37.500 0.00 0.00 42.86 1.94
4327 11807 6.462073 GTAATGATACGTGTTTGTCACAGT 57.538 37.500 0.00 0.00 46.44 3.55
4328 11808 7.571089 GTAATGATACGTGTTTGTCACAGTA 57.429 36.000 0.00 0.00 46.44 2.74
4329 11809 6.706055 AATGATACGTGTTTGTCACAGTAG 57.294 37.500 0.00 0.00 46.44 2.57
4330 11810 4.552355 TGATACGTGTTTGTCACAGTAGG 58.448 43.478 0.00 0.00 46.44 3.18
4331 11811 2.973694 ACGTGTTTGTCACAGTAGGT 57.026 45.000 0.00 0.00 46.44 3.08
4332 11812 2.817901 ACGTGTTTGTCACAGTAGGTC 58.182 47.619 0.00 0.00 46.44 3.85
4333 11813 1.784856 CGTGTTTGTCACAGTAGGTCG 59.215 52.381 0.00 0.00 46.44 4.79
4334 11814 1.525619 GTGTTTGTCACAGTAGGTCGC 59.474 52.381 0.00 0.00 45.51 5.19
4335 11815 0.782384 GTTTGTCACAGTAGGTCGCG 59.218 55.000 0.00 0.00 0.00 5.87
4336 11816 0.386476 TTTGTCACAGTAGGTCGCGT 59.614 50.000 5.77 0.00 0.00 6.01
4337 11817 0.386476 TTGTCACAGTAGGTCGCGTT 59.614 50.000 5.77 0.00 0.00 4.84
4338 11818 0.386476 TGTCACAGTAGGTCGCGTTT 59.614 50.000 5.77 0.00 0.00 3.60
4339 11819 1.202440 TGTCACAGTAGGTCGCGTTTT 60.202 47.619 5.77 0.00 0.00 2.43
4340 11820 1.862827 GTCACAGTAGGTCGCGTTTTT 59.137 47.619 5.77 0.00 0.00 1.94
4359 11839 5.718724 TTTTTGTCATGCATGTACATCCA 57.281 34.783 25.43 2.99 0.00 3.41
4360 11840 5.918426 TTTTGTCATGCATGTACATCCAT 57.082 34.783 25.43 6.44 0.00 3.41
4361 11841 4.904253 TTGTCATGCATGTACATCCATG 57.096 40.909 27.23 27.23 44.07 3.66
4362 11842 4.153673 TGTCATGCATGTACATCCATGA 57.846 40.909 30.25 30.25 43.99 3.07
4364 11844 3.132925 TCATGCATGTACATCCATGACG 58.867 45.455 30.25 12.42 43.99 4.35
4365 11845 2.977772 TGCATGTACATCCATGACGA 57.022 45.000 5.07 0.00 43.99 4.20
4366 11846 3.473923 TGCATGTACATCCATGACGAT 57.526 42.857 5.07 0.00 43.99 3.73
4367 11847 3.807553 TGCATGTACATCCATGACGATT 58.192 40.909 5.07 0.00 43.99 3.34
4368 11848 4.198530 TGCATGTACATCCATGACGATTT 58.801 39.130 5.07 0.00 43.99 2.17
4369 11849 4.639755 TGCATGTACATCCATGACGATTTT 59.360 37.500 5.07 0.00 43.99 1.82
4370 11850 5.819901 TGCATGTACATCCATGACGATTTTA 59.180 36.000 5.07 0.00 43.99 1.52
4371 11851 6.486320 TGCATGTACATCCATGACGATTTTAT 59.514 34.615 5.07 0.00 43.99 1.40
4372 11852 6.798476 GCATGTACATCCATGACGATTTTATG 59.202 38.462 5.07 0.00 43.99 1.90
4373 11853 7.307930 GCATGTACATCCATGACGATTTTATGA 60.308 37.037 5.07 0.00 43.99 2.15
4374 11854 7.477144 TGTACATCCATGACGATTTTATGAC 57.523 36.000 0.00 0.00 0.00 3.06
4375 11855 7.044798 TGTACATCCATGACGATTTTATGACA 58.955 34.615 0.00 0.00 0.00 3.58
4376 11856 6.609237 ACATCCATGACGATTTTATGACAG 57.391 37.500 0.00 0.00 0.00 3.51
4377 11857 6.348498 ACATCCATGACGATTTTATGACAGA 58.652 36.000 0.00 0.00 0.00 3.41
4378 11858 6.823182 ACATCCATGACGATTTTATGACAGAA 59.177 34.615 0.00 0.00 0.00 3.02
4379 11859 7.500227 ACATCCATGACGATTTTATGACAGAAT 59.500 33.333 0.00 0.00 0.00 2.40
4380 11860 7.482654 TCCATGACGATTTTATGACAGAATC 57.517 36.000 0.00 0.00 0.00 2.52
4381 11861 7.047271 TCCATGACGATTTTATGACAGAATCA 58.953 34.615 0.00 0.00 43.13 2.57
4382 11862 7.552330 TCCATGACGATTTTATGACAGAATCAA 59.448 33.333 0.00 0.00 41.93 2.57
4383 11863 7.854422 CCATGACGATTTTATGACAGAATCAAG 59.146 37.037 0.00 0.00 41.93 3.02
4384 11864 8.606602 CATGACGATTTTATGACAGAATCAAGA 58.393 33.333 0.00 0.00 41.93 3.02
4385 11865 8.722480 TGACGATTTTATGACAGAATCAAGAT 57.278 30.769 0.00 0.00 41.93 2.40
4386 11866 9.816354 TGACGATTTTATGACAGAATCAAGATA 57.184 29.630 0.00 0.00 41.93 1.98
4396 11876 8.722480 TGACAGAATCAAGATAAACATACCTG 57.278 34.615 0.00 0.00 33.02 4.00
4397 11877 8.321353 TGACAGAATCAAGATAAACATACCTGT 58.679 33.333 0.00 0.00 33.19 4.00
4398 11878 8.498054 ACAGAATCAAGATAAACATACCTGTG 57.502 34.615 0.00 0.00 35.22 3.66
4399 11879 7.066284 ACAGAATCAAGATAAACATACCTGTGC 59.934 37.037 0.00 0.00 35.22 4.57
4400 11880 7.281774 CAGAATCAAGATAAACATACCTGTGCT 59.718 37.037 0.00 0.00 35.22 4.40
4401 11881 8.486210 AGAATCAAGATAAACATACCTGTGCTA 58.514 33.333 0.00 0.00 35.22 3.49
4402 11882 9.277783 GAATCAAGATAAACATACCTGTGCTAT 57.722 33.333 0.00 0.00 35.22 2.97
4403 11883 8.839310 ATCAAGATAAACATACCTGTGCTATC 57.161 34.615 0.00 0.00 35.22 2.08
4404 11884 6.923508 TCAAGATAAACATACCTGTGCTATCG 59.076 38.462 0.00 0.00 36.75 2.92
4405 11885 6.406692 AGATAAACATACCTGTGCTATCGT 57.593 37.500 0.00 0.00 36.75 3.73
4406 11886 7.520451 AGATAAACATACCTGTGCTATCGTA 57.480 36.000 0.00 0.00 36.75 3.43
4407 11887 7.594714 AGATAAACATACCTGTGCTATCGTAG 58.405 38.462 0.00 0.00 36.75 3.51
4408 11888 5.847111 AAACATACCTGTGCTATCGTAGA 57.153 39.130 0.00 0.00 36.80 2.59
4409 11889 5.847111 AACATACCTGTGCTATCGTAGAA 57.153 39.130 0.00 0.00 36.11 2.10
4410 11890 5.440234 ACATACCTGTGCTATCGTAGAAG 57.560 43.478 0.00 0.00 34.87 2.85
4411 11891 4.888239 ACATACCTGTGCTATCGTAGAAGT 59.112 41.667 0.00 0.00 34.87 3.01
4412 11892 3.784701 ACCTGTGCTATCGTAGAAGTG 57.215 47.619 0.00 0.00 43.58 3.16
4413 11893 3.090037 ACCTGTGCTATCGTAGAAGTGT 58.910 45.455 0.00 0.00 43.58 3.55
4414 11894 3.510360 ACCTGTGCTATCGTAGAAGTGTT 59.490 43.478 0.00 0.00 43.58 3.32
4415 11895 4.106197 CCTGTGCTATCGTAGAAGTGTTC 58.894 47.826 0.00 0.00 43.58 3.18
4416 11896 4.106029 TGTGCTATCGTAGAAGTGTTCC 57.894 45.455 0.00 0.00 43.58 3.62
4417 11897 3.508402 TGTGCTATCGTAGAAGTGTTCCA 59.492 43.478 0.00 0.00 43.58 3.53
4418 11898 4.159693 TGTGCTATCGTAGAAGTGTTCCAT 59.840 41.667 0.00 0.00 43.58 3.41
4419 11899 4.504461 GTGCTATCGTAGAAGTGTTCCATG 59.496 45.833 0.00 0.00 43.58 3.66
4420 11900 4.401202 TGCTATCGTAGAAGTGTTCCATGA 59.599 41.667 0.00 0.00 43.58 3.07
4421 11901 4.740695 GCTATCGTAGAAGTGTTCCATGAC 59.259 45.833 0.00 0.00 43.58 3.06
4422 11902 4.801330 ATCGTAGAAGTGTTCCATGACA 57.199 40.909 0.00 0.00 43.58 3.58
4423 11903 4.801330 TCGTAGAAGTGTTCCATGACAT 57.199 40.909 0.00 0.00 0.00 3.06
4424 11904 5.147330 TCGTAGAAGTGTTCCATGACATT 57.853 39.130 0.00 0.00 0.00 2.71
4425 11905 6.275494 TCGTAGAAGTGTTCCATGACATTA 57.725 37.500 0.00 0.00 0.00 1.90
4426 11906 6.097356 TCGTAGAAGTGTTCCATGACATTAC 58.903 40.000 0.00 0.00 0.00 1.89
4427 11907 5.291128 CGTAGAAGTGTTCCATGACATTACC 59.709 44.000 0.00 0.00 0.00 2.85
4428 11908 5.241403 AGAAGTGTTCCATGACATTACCA 57.759 39.130 0.00 0.00 0.00 3.25
4429 11909 5.630121 AGAAGTGTTCCATGACATTACCAA 58.370 37.500 0.00 0.00 0.00 3.67
4430 11910 6.068010 AGAAGTGTTCCATGACATTACCAAA 58.932 36.000 0.00 0.00 0.00 3.28
4431 11911 6.549364 AGAAGTGTTCCATGACATTACCAAAA 59.451 34.615 0.00 0.00 0.00 2.44
4432 11912 6.916360 AGTGTTCCATGACATTACCAAAAT 57.084 33.333 0.00 0.00 0.00 1.82
4433 11913 7.301868 AGTGTTCCATGACATTACCAAAATT 57.698 32.000 0.00 0.00 0.00 1.82
4434 11914 8.415950 AGTGTTCCATGACATTACCAAAATTA 57.584 30.769 0.00 0.00 0.00 1.40
4435 11915 9.034800 AGTGTTCCATGACATTACCAAAATTAT 57.965 29.630 0.00 0.00 0.00 1.28
4436 11916 9.301153 GTGTTCCATGACATTACCAAAATTATC 57.699 33.333 0.00 0.00 0.00 1.75
4437 11917 9.029368 TGTTCCATGACATTACCAAAATTATCA 57.971 29.630 0.00 0.00 0.00 2.15
4440 11920 9.418839 TCCATGACATTACCAAAATTATCATCA 57.581 29.630 0.00 0.00 0.00 3.07
4441 11921 9.467258 CCATGACATTACCAAAATTATCATCAC 57.533 33.333 0.00 0.00 0.00 3.06
4442 11922 9.172820 CATGACATTACCAAAATTATCATCACG 57.827 33.333 0.00 0.00 0.00 4.35
4443 11923 7.702386 TGACATTACCAAAATTATCATCACGG 58.298 34.615 0.00 0.00 0.00 4.94
4444 11924 7.554476 TGACATTACCAAAATTATCATCACGGA 59.446 33.333 0.00 0.00 0.00 4.69
4445 11925 8.287439 ACATTACCAAAATTATCATCACGGAA 57.713 30.769 0.00 0.00 0.00 4.30
4446 11926 8.405531 ACATTACCAAAATTATCATCACGGAAG 58.594 33.333 0.00 0.00 0.00 3.46
4452 11932 7.228507 CCAAAATTATCATCACGGAAGTATCCA 59.771 37.037 0.00 0.00 46.97 3.41
4453 11933 7.730364 AAATTATCATCACGGAAGTATCCAC 57.270 36.000 0.00 0.00 46.97 4.02
4454 11934 6.672266 ATTATCATCACGGAAGTATCCACT 57.328 37.500 0.00 0.00 46.97 4.00
4467 11947 6.479972 AAGTATCCACTTCCATGACGATAA 57.520 37.500 0.00 0.00 41.25 1.75
4468 11948 6.479972 AGTATCCACTTCCATGACGATAAA 57.520 37.500 0.00 0.00 0.00 1.40
4469 11949 7.067496 AGTATCCACTTCCATGACGATAAAT 57.933 36.000 0.00 0.00 0.00 1.40
4470 11950 7.155328 AGTATCCACTTCCATGACGATAAATC 58.845 38.462 0.00 0.00 0.00 2.17
4479 11959 4.752565 CGATAAATCGCGCGTCAC 57.247 55.556 30.98 14.60 43.84 3.67
4480 11960 1.914389 CGATAAATCGCGCGTCACA 59.086 52.632 30.98 11.14 43.84 3.58
4481 11961 0.112137 CGATAAATCGCGCGTCACAG 60.112 55.000 30.98 12.40 43.84 3.66
4482 11962 1.197055 GATAAATCGCGCGTCACAGA 58.803 50.000 30.98 9.80 0.00 3.41
4483 11963 1.586578 GATAAATCGCGCGTCACAGAA 59.413 47.619 30.98 8.92 0.00 3.02
4484 11964 0.989164 TAAATCGCGCGTCACAGAAG 59.011 50.000 30.98 0.00 0.00 2.85
4485 11965 0.944311 AAATCGCGCGTCACAGAAGT 60.944 50.000 30.98 4.30 0.00 3.01
4487 11967 4.415501 CGCGCGTCACAGAAGTGC 62.416 66.667 24.19 8.13 45.49 4.40
4488 11968 3.038417 GCGCGTCACAGAAGTGCT 61.038 61.111 8.43 0.00 45.49 4.40
4489 11969 2.598632 GCGCGTCACAGAAGTGCTT 61.599 57.895 8.43 0.00 45.49 3.91
4490 11970 1.934463 CGCGTCACAGAAGTGCTTT 59.066 52.632 0.00 0.00 45.49 3.51
4491 11971 0.111089 CGCGTCACAGAAGTGCTTTC 60.111 55.000 0.00 0.00 45.49 2.62
4492 11972 0.111089 GCGTCACAGAAGTGCTTTCG 60.111 55.000 0.00 0.00 45.49 3.46
4493 11973 1.209128 CGTCACAGAAGTGCTTTCGT 58.791 50.000 0.00 0.00 45.49 3.85
4494 11974 1.190323 CGTCACAGAAGTGCTTTCGTC 59.810 52.381 0.00 0.00 45.49 4.20
4495 11975 2.201732 GTCACAGAAGTGCTTTCGTCA 58.798 47.619 0.00 0.00 45.49 4.35
4496 11976 2.607635 GTCACAGAAGTGCTTTCGTCAA 59.392 45.455 0.00 0.00 45.49 3.18
4497 11977 2.866156 TCACAGAAGTGCTTTCGTCAAG 59.134 45.455 0.00 0.00 45.49 3.02
4498 11978 2.032549 CACAGAAGTGCTTTCGTCAAGG 60.033 50.000 0.00 0.00 40.86 3.61
4499 11979 1.532868 CAGAAGTGCTTTCGTCAAGGG 59.467 52.381 0.00 0.00 40.86 3.95
4500 11980 1.141053 AGAAGTGCTTTCGTCAAGGGT 59.859 47.619 0.00 0.00 40.86 4.34
4501 11981 1.264288 GAAGTGCTTTCGTCAAGGGTG 59.736 52.381 0.00 0.00 32.37 4.61
4502 11982 0.468226 AGTGCTTTCGTCAAGGGTGA 59.532 50.000 0.00 0.00 32.37 4.02
4516 11996 2.357034 GTGACCGACACGTGGCAT 60.357 61.111 23.63 8.84 39.78 4.40
4517 11997 2.048597 TGACCGACACGTGGCATC 60.049 61.111 23.63 18.45 0.00 3.91
4518 11998 2.813908 GACCGACACGTGGCATCC 60.814 66.667 23.63 5.09 0.00 3.51
4519 11999 3.583276 GACCGACACGTGGCATCCA 62.583 63.158 23.63 0.00 0.00 3.41
4546 12026 0.850856 GGAACGCCGTTAAGCTATCG 59.149 55.000 0.79 0.00 0.00 2.92
4547 12027 0.850856 GAACGCCGTTAAGCTATCGG 59.149 55.000 0.79 16.35 45.94 4.18
4548 12028 0.529119 AACGCCGTTAAGCTATCGGG 60.529 55.000 20.20 14.38 43.77 5.14
4549 12029 1.066918 CGCCGTTAAGCTATCGGGT 59.933 57.895 20.20 0.00 43.77 5.28
4550 12030 0.938168 CGCCGTTAAGCTATCGGGTC 60.938 60.000 20.20 8.27 43.77 4.46
4551 12031 0.938168 GCCGTTAAGCTATCGGGTCG 60.938 60.000 20.20 5.65 43.77 4.79
4552 12032 0.318445 CCGTTAAGCTATCGGGTCGG 60.318 60.000 13.87 6.24 40.49 4.79
4553 12033 0.318445 CGTTAAGCTATCGGGTCGGG 60.318 60.000 0.00 0.00 0.00 5.14
4554 12034 0.749049 GTTAAGCTATCGGGTCGGGT 59.251 55.000 0.00 0.00 0.00 5.28
4555 12035 1.137675 GTTAAGCTATCGGGTCGGGTT 59.862 52.381 0.00 0.00 0.00 4.11
4556 12036 1.488390 TAAGCTATCGGGTCGGGTTT 58.512 50.000 0.00 0.00 0.00 3.27
4557 12037 0.616891 AAGCTATCGGGTCGGGTTTT 59.383 50.000 0.00 0.00 0.00 2.43
4558 12038 0.107848 AGCTATCGGGTCGGGTTTTG 60.108 55.000 0.00 0.00 0.00 2.44
4559 12039 1.093496 GCTATCGGGTCGGGTTTTGG 61.093 60.000 0.00 0.00 0.00 3.28
4560 12040 0.538118 CTATCGGGTCGGGTTTTGGA 59.462 55.000 0.00 0.00 0.00 3.53
4561 12041 1.140252 CTATCGGGTCGGGTTTTGGAT 59.860 52.381 0.00 0.00 0.00 3.41
4562 12042 0.107361 ATCGGGTCGGGTTTTGGATC 60.107 55.000 0.00 0.00 0.00 3.36
4563 12043 1.747745 CGGGTCGGGTTTTGGATCC 60.748 63.158 4.20 4.20 0.00 3.36
4564 12044 1.747745 GGGTCGGGTTTTGGATCCG 60.748 63.158 7.39 0.00 44.59 4.18
4569 12049 2.908916 TCGGGTTTTGGATCCGATAAC 58.091 47.619 7.39 10.62 46.48 1.89
4570 12050 1.944709 CGGGTTTTGGATCCGATAACC 59.055 52.381 24.06 24.06 45.96 2.85
4572 12052 1.944709 GGTTTTGGATCCGATAACCCG 59.055 52.381 22.63 0.00 33.72 5.28
4573 12053 2.635714 GTTTTGGATCCGATAACCCGT 58.364 47.619 7.39 0.00 0.00 5.28
4574 12054 3.011818 GTTTTGGATCCGATAACCCGTT 58.988 45.455 7.39 0.00 0.00 4.44
4575 12055 4.190772 GTTTTGGATCCGATAACCCGTTA 58.809 43.478 7.39 0.00 0.00 3.18
4576 12056 4.484537 TTTGGATCCGATAACCCGTTAA 57.515 40.909 7.39 0.00 0.00 2.01
4577 12057 3.457610 TGGATCCGATAACCCGTTAAC 57.542 47.619 7.39 0.00 0.00 2.01
4578 12058 2.765135 TGGATCCGATAACCCGTTAACA 59.235 45.455 7.39 0.00 0.00 2.41
4579 12059 3.181473 TGGATCCGATAACCCGTTAACAG 60.181 47.826 7.39 0.00 0.00 3.16
4580 12060 2.298411 TCCGATAACCCGTTAACAGC 57.702 50.000 6.39 0.00 0.00 4.40
4581 12061 1.134729 TCCGATAACCCGTTAACAGCC 60.135 52.381 6.39 0.00 0.00 4.85
4582 12062 1.292992 CGATAACCCGTTAACAGCCC 58.707 55.000 6.39 0.00 0.00 5.19
4583 12063 1.671979 GATAACCCGTTAACAGCCCC 58.328 55.000 6.39 0.00 0.00 5.80
4584 12064 0.107557 ATAACCCGTTAACAGCCCCG 60.108 55.000 6.39 0.00 0.00 5.73
4585 12065 1.190833 TAACCCGTTAACAGCCCCGA 61.191 55.000 6.39 0.00 0.00 5.14
4586 12066 1.844544 AACCCGTTAACAGCCCCGAT 61.845 55.000 6.39 0.00 0.00 4.18
4587 12067 1.523032 CCCGTTAACAGCCCCGATC 60.523 63.158 6.39 0.00 0.00 3.69
4588 12068 1.219664 CCGTTAACAGCCCCGATCA 59.780 57.895 6.39 0.00 0.00 2.92
4589 12069 0.391927 CCGTTAACAGCCCCGATCAA 60.392 55.000 6.39 0.00 0.00 2.57
4590 12070 1.663695 CGTTAACAGCCCCGATCAAT 58.336 50.000 6.39 0.00 0.00 2.57
4591 12071 1.330521 CGTTAACAGCCCCGATCAATG 59.669 52.381 6.39 0.00 0.00 2.82
4592 12072 1.676006 GTTAACAGCCCCGATCAATGG 59.324 52.381 0.00 0.00 0.00 3.16
4593 12073 0.182537 TAACAGCCCCGATCAATGGG 59.817 55.000 7.45 7.45 46.93 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.091541 CCCAAACATCTTATGTGCCGT 58.908 47.619 0.00 0.00 44.07 5.68
62 63 0.392336 GCCAAGCATTCACCCAAACA 59.608 50.000 0.00 0.00 0.00 2.83
63 64 0.667184 CGCCAAGCATTCACCCAAAC 60.667 55.000 0.00 0.00 0.00 2.93
77 2112 1.483004 TCGATACAAGATTCCCGCCAA 59.517 47.619 0.00 0.00 0.00 4.52
82 2117 5.239525 CCAATTTCCTCGATACAAGATTCCC 59.760 44.000 0.00 0.00 0.00 3.97
93 2128 2.332063 ACATCGCCAATTTCCTCGAT 57.668 45.000 0.00 0.00 41.66 3.59
95 2130 2.285220 CAGTACATCGCCAATTTCCTCG 59.715 50.000 0.00 0.00 0.00 4.63
101 2136 1.677576 CCATGCAGTACATCGCCAATT 59.322 47.619 0.00 0.00 36.64 2.32
102 2137 1.311859 CCATGCAGTACATCGCCAAT 58.688 50.000 0.00 0.00 36.64 3.16
134 2172 1.618343 TCATCAGCCTCGACACAAGAA 59.382 47.619 0.00 0.00 0.00 2.52
165 2243 3.039011 GGGTAGGGAATAGAGTTCAGCA 58.961 50.000 0.00 0.00 0.00 4.41
171 2249 6.296435 ACATCTTAGGGTAGGGAATAGAGT 57.704 41.667 0.00 0.00 0.00 3.24
189 2269 3.845781 ACACCTTCACACAGAACATCT 57.154 42.857 0.00 0.00 31.61 2.90
194 2274 4.439974 GCATGAAAACACCTTCACACAGAA 60.440 41.667 0.00 0.00 38.12 3.02
200 2280 5.627499 TGATAGCATGAAAACACCTTCAC 57.373 39.130 0.00 0.00 38.12 3.18
205 2285 6.389091 TGAACAATGATAGCATGAAAACACC 58.611 36.000 0.00 0.00 34.26 4.16
206 2286 8.377681 CAATGAACAATGATAGCATGAAAACAC 58.622 33.333 0.00 0.00 34.26 3.32
207 2287 8.089597 ACAATGAACAATGATAGCATGAAAACA 58.910 29.630 0.00 0.00 34.26 2.83
208 2288 8.470040 ACAATGAACAATGATAGCATGAAAAC 57.530 30.769 0.00 0.00 34.26 2.43
209 2289 9.491675 AAACAATGAACAATGATAGCATGAAAA 57.508 25.926 0.00 0.00 34.26 2.29
210 2290 9.491675 AAAACAATGAACAATGATAGCATGAAA 57.508 25.926 0.00 0.00 34.26 2.69
211 2291 9.491675 AAAAACAATGAACAATGATAGCATGAA 57.508 25.926 0.00 0.00 34.26 2.57
212 2292 8.927721 CAAAAACAATGAACAATGATAGCATGA 58.072 29.630 0.00 0.00 34.26 3.07
213 2293 8.927721 TCAAAAACAATGAACAATGATAGCATG 58.072 29.630 0.00 0.00 34.26 4.06
214 2294 9.661563 ATCAAAAACAATGAACAATGATAGCAT 57.338 25.926 0.00 0.00 35.92 3.79
219 2299 8.885722 GCCATATCAAAAACAATGAACAATGAT 58.114 29.630 0.00 0.00 0.00 2.45
220 2300 8.095792 AGCCATATCAAAAACAATGAACAATGA 58.904 29.630 0.00 0.00 0.00 2.57
221 2301 8.259049 AGCCATATCAAAAACAATGAACAATG 57.741 30.769 0.00 0.00 0.00 2.82
222 2302 8.851541 AAGCCATATCAAAAACAATGAACAAT 57.148 26.923 0.00 0.00 0.00 2.71
223 2303 9.202273 GTAAGCCATATCAAAAACAATGAACAA 57.798 29.630 0.00 0.00 0.00 2.83
224 2304 8.584157 AGTAAGCCATATCAAAAACAATGAACA 58.416 29.630 0.00 0.00 0.00 3.18
225 2305 8.986477 AGTAAGCCATATCAAAAACAATGAAC 57.014 30.769 0.00 0.00 0.00 3.18
227 2307 9.461312 AGTAGTAAGCCATATCAAAAACAATGA 57.539 29.630 0.00 0.00 0.00 2.57
228 2308 9.722056 GAGTAGTAAGCCATATCAAAAACAATG 57.278 33.333 0.00 0.00 0.00 2.82
229 2309 9.461312 TGAGTAGTAAGCCATATCAAAAACAAT 57.539 29.630 0.00 0.00 0.00 2.71
230 2310 8.856153 TGAGTAGTAAGCCATATCAAAAACAA 57.144 30.769 0.00 0.00 0.00 2.83
231 2311 8.892723 CATGAGTAGTAAGCCATATCAAAAACA 58.107 33.333 0.00 0.00 0.00 2.83
232 2312 7.857885 GCATGAGTAGTAAGCCATATCAAAAAC 59.142 37.037 0.00 0.00 0.00 2.43
233 2313 7.013274 GGCATGAGTAGTAAGCCATATCAAAAA 59.987 37.037 0.00 0.00 44.59 1.94
234 2314 6.486657 GGCATGAGTAGTAAGCCATATCAAAA 59.513 38.462 0.00 0.00 44.59 2.44
235 2315 5.997746 GGCATGAGTAGTAAGCCATATCAAA 59.002 40.000 0.00 0.00 44.59 2.69
236 2316 5.551233 GGCATGAGTAGTAAGCCATATCAA 58.449 41.667 0.00 0.00 44.59 2.57
237 2317 5.152623 GGCATGAGTAGTAAGCCATATCA 57.847 43.478 0.00 0.00 44.59 2.15
243 2323 2.939103 CACTTGGCATGAGTAGTAAGCC 59.061 50.000 7.45 0.00 45.41 4.35
244 2324 2.939103 CCACTTGGCATGAGTAGTAAGC 59.061 50.000 7.45 0.00 0.00 3.09
245 2325 3.935203 CACCACTTGGCATGAGTAGTAAG 59.065 47.826 7.45 0.00 39.32 2.34
246 2326 3.326588 ACACCACTTGGCATGAGTAGTAA 59.673 43.478 7.45 0.00 39.32 2.24
247 2327 2.903784 ACACCACTTGGCATGAGTAGTA 59.096 45.455 7.45 0.00 39.32 1.82
248 2328 1.699634 ACACCACTTGGCATGAGTAGT 59.300 47.619 7.45 0.00 39.32 2.73
249 2329 2.479566 ACACCACTTGGCATGAGTAG 57.520 50.000 7.45 0.00 39.32 2.57
250 2330 2.949177 AACACCACTTGGCATGAGTA 57.051 45.000 7.45 0.00 39.32 2.59
251 2331 2.071778 AAACACCACTTGGCATGAGT 57.928 45.000 7.45 0.00 39.32 3.41
252 2332 2.361757 TGAAAACACCACTTGGCATGAG 59.638 45.455 7.45 0.00 39.32 2.90
253 2333 2.382882 TGAAAACACCACTTGGCATGA 58.617 42.857 7.45 0.00 39.32 3.07
254 2334 2.886862 TGAAAACACCACTTGGCATG 57.113 45.000 0.00 0.00 39.32 4.06
255 2335 2.548493 GCATGAAAACACCACTTGGCAT 60.548 45.455 0.00 0.00 39.32 4.40
256 2336 1.202510 GCATGAAAACACCACTTGGCA 60.203 47.619 0.00 0.00 39.32 4.92
257 2337 1.069049 AGCATGAAAACACCACTTGGC 59.931 47.619 0.00 0.00 39.32 4.52
258 2338 4.218200 TGATAGCATGAAAACACCACTTGG 59.782 41.667 0.00 0.00 42.17 3.61
259 2339 5.375417 TGATAGCATGAAAACACCACTTG 57.625 39.130 0.00 0.00 0.00 3.16
260 2340 7.325660 CTATGATAGCATGAAAACACCACTT 57.674 36.000 3.11 0.00 35.94 3.16
261 2341 6.932356 CTATGATAGCATGAAAACACCACT 57.068 37.500 3.11 0.00 35.94 4.00
301 2381 5.717178 TCAGCCTCTATACTTGTTTCAGAGT 59.283 40.000 0.00 0.00 32.56 3.24
313 2393 7.659652 GTATCAAACCAATCAGCCTCTATAC 57.340 40.000 0.00 0.00 0.00 1.47
447 2544 3.286353 TGCCAAATGTTGACAAGTCTGA 58.714 40.909 1.53 0.00 0.00 3.27
599 2703 2.211410 CCACCACCACCGGTACAGA 61.211 63.158 6.87 0.00 37.07 3.41
606 2710 2.747460 CAGCATCCACCACCACCG 60.747 66.667 0.00 0.00 0.00 4.94
707 2821 1.813753 CGTACATTGCCACCCGGAG 60.814 63.158 0.73 0.00 0.00 4.63
935 3068 5.708948 CTCTCTCTACACATAGCATAAGCC 58.291 45.833 0.00 0.00 43.56 4.35
980 3132 2.167900 GTCAAGCGAGGGTTGTACCTAT 59.832 50.000 7.34 0.00 42.10 2.57
1057 3227 2.558575 CCTCTCCTTCTTCACTCCCAGA 60.559 54.545 0.00 0.00 0.00 3.86
1240 3431 7.616313 ACTCGACTGAGATAAAAGAAAAGGAT 58.384 34.615 0.00 0.00 45.57 3.24
1243 3434 7.596995 AGTGACTCGACTGAGATAAAAGAAAAG 59.403 37.037 0.00 0.00 45.57 2.27
1258 3450 2.584391 GCCCCCAAGTGACTCGACT 61.584 63.158 0.00 0.00 0.00 4.18
1281 4177 8.261522 GGTTGTCTCTTCCAACTAGAATAATCT 58.738 37.037 0.00 0.00 41.47 2.40
1433 4539 7.925483 ACGTGATTACTCTACTAGTCGTCTAAT 59.075 37.037 0.00 0.00 39.80 1.73
1449 4555 1.990563 GCAGCGTGTTACGTGATTACT 59.009 47.619 0.00 0.00 44.73 2.24
1487 4593 6.701400 AGTTTGGGATTGAAATCAAAGTTTCG 59.299 34.615 0.00 0.00 40.20 3.46
1751 6652 5.464168 GGAATGACATGAACACAAAGAAGG 58.536 41.667 0.00 0.00 0.00 3.46
1797 9006 1.948104 TGGTGTTCACTCCTGTTTCG 58.052 50.000 2.98 0.00 0.00 3.46
1799 9008 2.174639 TCCATGGTGTTCACTCCTGTTT 59.825 45.455 12.58 0.00 0.00 2.83
1830 9039 2.646175 CGCCGGGAAGAACCTCTCA 61.646 63.158 2.18 0.00 38.98 3.27
1884 9093 3.386486 CTGGTTGTCGTACTTGCAGTAA 58.614 45.455 0.00 0.00 31.62 2.24
1932 9141 1.209747 GAGACTTGGCCGGAAAGGTAT 59.790 52.381 18.38 4.41 43.70 2.73
2097 9306 2.125673 CCGAAACCGATGCCGACT 60.126 61.111 0.00 0.00 38.22 4.18
2136 9356 2.809706 GCCCACTCGCCGTATGTA 59.190 61.111 0.00 0.00 0.00 2.29
2145 9370 2.108514 ACATGCAATCGCCCACTCG 61.109 57.895 0.00 0.00 37.32 4.18
3143 10610 2.197577 GCAGGAAGACATAGACGAAGC 58.802 52.381 0.00 0.00 0.00 3.86
3302 10778 1.340697 TGCAATCAGCTCCTGCAAGAT 60.341 47.619 10.64 0.00 42.84 2.40
3327 10803 6.457392 CCGTTGATAATGATCTTCACTTGTGG 60.457 42.308 0.64 0.00 32.79 4.17
3352 10828 4.494855 GCTCCTATCAAAACATTCGCTGTC 60.495 45.833 0.00 0.00 36.98 3.51
3356 10832 3.126858 TGTGCTCCTATCAAAACATTCGC 59.873 43.478 0.00 0.00 0.00 4.70
3399 10875 0.671781 GCCCTGCGCATGGTATCTAG 60.672 60.000 28.97 11.83 37.47 2.43
3683 11161 8.871629 TTCACCATGTTTTTAGGAATAGCTAA 57.128 30.769 0.00 0.00 0.00 3.09
3693 11171 9.139174 GGACAATATGTTTCACCATGTTTTTAG 57.861 33.333 0.00 0.00 0.00 1.85
3704 11182 7.044181 TGATCTCTCAGGACAATATGTTTCAC 58.956 38.462 0.00 0.00 0.00 3.18
3708 11186 7.615039 AGATGATCTCTCAGGACAATATGTT 57.385 36.000 0.00 0.00 34.12 2.71
3764 11242 7.016153 TGCTAAGGTGAAGGAAAGAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
3773 11251 7.441157 CGTATGATAAATGCTAAGGTGAAGGAA 59.559 37.037 0.00 0.00 0.00 3.36
3776 11254 7.438160 TCACGTATGATAAATGCTAAGGTGAAG 59.562 37.037 0.00 0.00 0.00 3.02
3781 11259 6.701841 AGTGTCACGTATGATAAATGCTAAGG 59.298 38.462 0.00 0.00 37.14 2.69
3786 11264 5.050490 AGGAGTGTCACGTATGATAAATGC 58.950 41.667 0.00 0.00 37.14 3.56
3794 11272 7.646922 GGTACTATTTTAGGAGTGTCACGTATG 59.353 40.741 0.00 0.00 0.00 2.39
3819 11297 2.958355 CCCTTAGGGCAATGTACAATGG 59.042 50.000 12.73 0.55 35.35 3.16
3851 11329 5.725325 ACTGTGTCCTTTTAGAGGTCTAC 57.275 43.478 0.00 0.00 46.39 2.59
3871 11349 3.467803 GTCTGGCTGCGGATAAAATACT 58.532 45.455 0.00 0.00 0.00 2.12
3910 11388 9.490663 CACAAACAAGAGTAGTTTAAAGAACTG 57.509 33.333 7.02 0.00 37.10 3.16
3915 11393 7.429340 CACAGCACAAACAAGAGTAGTTTAAAG 59.571 37.037 0.00 0.00 37.10 1.85
3930 11408 2.362077 ACCCTTGAATCACAGCACAAAC 59.638 45.455 0.00 0.00 0.00 2.93
3937 11415 5.336690 CCCAAACATAACCCTTGAATCACAG 60.337 44.000 0.00 0.00 0.00 3.66
3953 11431 5.337491 GGAAATATCAACTGTGCCCAAACAT 60.337 40.000 0.00 0.00 0.00 2.71
3965 11443 6.761714 CGTAGTTAAGCCTGGAAATATCAACT 59.238 38.462 0.00 0.00 0.00 3.16
3976 11454 1.067142 TGACAGCGTAGTTAAGCCTGG 60.067 52.381 0.00 0.00 0.00 4.45
4016 11494 2.436646 ATCAAGTCCGCGCCCTTG 60.437 61.111 22.53 22.53 39.50 3.61
4029 11507 7.201848 GGGCAATATGTCTGAATTGAAGATCAA 60.202 37.037 5.05 0.00 41.09 2.57
4047 11526 9.890915 TCCCAAAGTTATTAATAAGGGCAATAT 57.109 29.630 18.96 0.00 35.03 1.28
4086 11565 1.929836 GACGAGAGCATAGCCTTTGTG 59.070 52.381 0.00 0.00 0.00 3.33
4087 11566 1.827969 AGACGAGAGCATAGCCTTTGT 59.172 47.619 0.00 0.00 0.00 2.83
4090 11569 1.953686 GAGAGACGAGAGCATAGCCTT 59.046 52.381 0.00 0.00 0.00 4.35
4123 11603 4.208746 ACTGATAAGGGAAGAGAGTACGG 58.791 47.826 0.00 0.00 0.00 4.02
4132 11612 3.922171 AAGGCAGACTGATAAGGGAAG 57.078 47.619 6.65 0.00 0.00 3.46
4176 11656 3.508762 TCGTGAAGATAAAGAACTCCGC 58.491 45.455 0.00 0.00 0.00 5.54
4188 11668 8.455903 AATGTCATGGATAATTTCGTGAAGAT 57.544 30.769 0.00 0.00 0.00 2.40
4227 11707 4.096984 CCAGCTTAAGGATTACTGCTTTGG 59.903 45.833 4.29 0.00 38.15 3.28
4228 11708 4.943705 TCCAGCTTAAGGATTACTGCTTTG 59.056 41.667 4.29 0.00 38.15 2.77
4234 11714 6.213600 TCTCAAAGTCCAGCTTAAGGATTACT 59.786 38.462 4.29 0.00 37.52 2.24
4249 11729 5.062809 CGAGTCATAAGCTTTCTCAAAGTCC 59.937 44.000 3.20 0.00 40.64 3.85
4315 11795 1.860676 GCGACCTACTGTGACAAACA 58.139 50.000 0.00 0.00 37.22 2.83
4316 11796 0.782384 CGCGACCTACTGTGACAAAC 59.218 55.000 0.00 0.00 0.00 2.93
4317 11797 0.386476 ACGCGACCTACTGTGACAAA 59.614 50.000 15.93 0.00 0.00 2.83
4318 11798 0.386476 AACGCGACCTACTGTGACAA 59.614 50.000 15.93 0.00 0.00 3.18
4319 11799 0.386476 AAACGCGACCTACTGTGACA 59.614 50.000 15.93 0.00 0.00 3.58
4320 11800 1.494824 AAAACGCGACCTACTGTGAC 58.505 50.000 15.93 0.00 0.00 3.67
4321 11801 2.228138 AAAAACGCGACCTACTGTGA 57.772 45.000 15.93 0.00 0.00 3.58
4337 11817 5.718724 TGGATGTACATGCATGACAAAAA 57.281 34.783 32.75 16.53 34.14 1.94
4338 11818 5.918426 ATGGATGTACATGCATGACAAAA 57.082 34.783 33.87 18.90 46.05 2.44
4346 11826 2.977772 TCGTCATGGATGTACATGCA 57.022 45.000 29.03 29.03 46.02 3.96
4347 11827 4.818534 AAATCGTCATGGATGTACATGC 57.181 40.909 19.53 19.53 46.02 4.06
4349 11829 7.714813 TGTCATAAAATCGTCATGGATGTACAT 59.285 33.333 8.43 8.43 0.00 2.29
4350 11830 7.044798 TGTCATAAAATCGTCATGGATGTACA 58.955 34.615 0.00 0.00 0.00 2.90
4351 11831 7.438160 TCTGTCATAAAATCGTCATGGATGTAC 59.562 37.037 0.00 0.00 0.00 2.90
4352 11832 7.496747 TCTGTCATAAAATCGTCATGGATGTA 58.503 34.615 0.00 0.00 0.00 2.29
4353 11833 6.348498 TCTGTCATAAAATCGTCATGGATGT 58.652 36.000 0.00 0.00 0.00 3.06
4354 11834 6.849588 TCTGTCATAAAATCGTCATGGATG 57.150 37.500 0.00 0.00 0.00 3.51
4355 11835 7.716560 TGATTCTGTCATAAAATCGTCATGGAT 59.283 33.333 0.00 0.00 33.13 3.41
4356 11836 7.047271 TGATTCTGTCATAAAATCGTCATGGA 58.953 34.615 0.00 0.00 33.13 3.41
4357 11837 7.250445 TGATTCTGTCATAAAATCGTCATGG 57.750 36.000 0.00 0.00 33.13 3.66
4358 11838 8.606602 TCTTGATTCTGTCATAAAATCGTCATG 58.393 33.333 0.00 0.00 36.54 3.07
4359 11839 8.722480 TCTTGATTCTGTCATAAAATCGTCAT 57.278 30.769 0.00 0.00 36.54 3.06
4360 11840 8.722480 ATCTTGATTCTGTCATAAAATCGTCA 57.278 30.769 0.00 0.00 36.54 4.35
4370 11850 9.334947 CAGGTATGTTTATCTTGATTCTGTCAT 57.665 33.333 0.00 0.00 36.54 3.06
4371 11851 8.321353 ACAGGTATGTTTATCTTGATTCTGTCA 58.679 33.333 0.00 0.00 35.63 3.58
4372 11852 8.607459 CACAGGTATGTTTATCTTGATTCTGTC 58.393 37.037 0.00 0.00 37.65 3.51
4373 11853 7.066284 GCACAGGTATGTTTATCTTGATTCTGT 59.934 37.037 0.00 0.00 37.65 3.41
4374 11854 7.281774 AGCACAGGTATGTTTATCTTGATTCTG 59.718 37.037 0.00 0.00 37.65 3.02
4375 11855 7.341805 AGCACAGGTATGTTTATCTTGATTCT 58.658 34.615 0.00 0.00 37.65 2.40
4376 11856 7.559590 AGCACAGGTATGTTTATCTTGATTC 57.440 36.000 0.00 0.00 37.65 2.52
4377 11857 9.277783 GATAGCACAGGTATGTTTATCTTGATT 57.722 33.333 0.00 0.00 37.65 2.57
4378 11858 7.600375 CGATAGCACAGGTATGTTTATCTTGAT 59.400 37.037 0.00 0.00 37.65 2.57
4379 11859 6.923508 CGATAGCACAGGTATGTTTATCTTGA 59.076 38.462 0.00 0.00 37.65 3.02
4380 11860 6.701841 ACGATAGCACAGGTATGTTTATCTTG 59.298 38.462 0.00 0.00 36.04 3.02
4381 11861 6.817184 ACGATAGCACAGGTATGTTTATCTT 58.183 36.000 0.00 0.00 36.04 2.40
4382 11862 6.406692 ACGATAGCACAGGTATGTTTATCT 57.593 37.500 0.00 0.00 36.04 1.98
4383 11863 7.591165 TCTACGATAGCACAGGTATGTTTATC 58.409 38.462 0.00 0.00 36.04 1.75
4384 11864 7.520451 TCTACGATAGCACAGGTATGTTTAT 57.480 36.000 0.00 0.00 36.04 1.40
4385 11865 6.947644 TCTACGATAGCACAGGTATGTTTA 57.052 37.500 0.00 0.00 36.04 2.01
4386 11866 5.847111 TCTACGATAGCACAGGTATGTTT 57.153 39.130 0.00 0.00 36.04 2.83
4387 11867 5.360144 ACTTCTACGATAGCACAGGTATGTT 59.640 40.000 0.00 0.00 36.04 2.71
4388 11868 4.888239 ACTTCTACGATAGCACAGGTATGT 59.112 41.667 0.00 0.00 39.31 2.29
4389 11869 5.215903 CACTTCTACGATAGCACAGGTATG 58.784 45.833 0.00 0.00 42.67 2.39
4390 11870 4.888239 ACACTTCTACGATAGCACAGGTAT 59.112 41.667 0.00 0.00 42.67 2.73
4391 11871 4.267536 ACACTTCTACGATAGCACAGGTA 58.732 43.478 0.00 0.00 42.67 3.08
4392 11872 3.090037 ACACTTCTACGATAGCACAGGT 58.910 45.455 0.00 0.00 42.67 4.00
4393 11873 3.784701 ACACTTCTACGATAGCACAGG 57.215 47.619 0.00 0.00 42.67 4.00
4394 11874 4.106197 GGAACACTTCTACGATAGCACAG 58.894 47.826 0.00 0.00 42.67 3.66
4395 11875 3.508402 TGGAACACTTCTACGATAGCACA 59.492 43.478 0.00 0.00 42.67 4.57
4396 11876 4.106029 TGGAACACTTCTACGATAGCAC 57.894 45.455 0.00 0.00 42.67 4.40
4414 11894 9.418839 TGATGATAATTTTGGTAATGTCATGGA 57.581 29.630 0.00 0.00 0.00 3.41
4415 11895 9.467258 GTGATGATAATTTTGGTAATGTCATGG 57.533 33.333 0.00 0.00 0.00 3.66
4416 11896 9.172820 CGTGATGATAATTTTGGTAATGTCATG 57.827 33.333 0.00 0.00 0.00 3.07
4417 11897 8.352201 CCGTGATGATAATTTTGGTAATGTCAT 58.648 33.333 0.00 0.00 0.00 3.06
4418 11898 7.554476 TCCGTGATGATAATTTTGGTAATGTCA 59.446 33.333 0.00 0.00 0.00 3.58
4419 11899 7.925993 TCCGTGATGATAATTTTGGTAATGTC 58.074 34.615 0.00 0.00 0.00 3.06
4420 11900 7.873719 TCCGTGATGATAATTTTGGTAATGT 57.126 32.000 0.00 0.00 0.00 2.71
4421 11901 8.405531 ACTTCCGTGATGATAATTTTGGTAATG 58.594 33.333 0.00 0.00 0.00 1.90
4422 11902 8.519799 ACTTCCGTGATGATAATTTTGGTAAT 57.480 30.769 0.00 0.00 0.00 1.89
4423 11903 7.931578 ACTTCCGTGATGATAATTTTGGTAA 57.068 32.000 0.00 0.00 0.00 2.85
4424 11904 9.268268 GATACTTCCGTGATGATAATTTTGGTA 57.732 33.333 0.00 0.00 0.00 3.25
4425 11905 7.228706 GGATACTTCCGTGATGATAATTTTGGT 59.771 37.037 0.00 0.00 30.72 3.67
4426 11906 7.228507 TGGATACTTCCGTGATGATAATTTTGG 59.771 37.037 0.00 0.00 45.89 3.28
4427 11907 8.070171 GTGGATACTTCCGTGATGATAATTTTG 58.930 37.037 0.00 0.00 45.89 2.44
4428 11908 7.993183 AGTGGATACTTCCGTGATGATAATTTT 59.007 33.333 0.00 0.00 45.89 1.82
4429 11909 7.509546 AGTGGATACTTCCGTGATGATAATTT 58.490 34.615 0.00 0.00 45.89 1.82
4430 11910 7.067496 AGTGGATACTTCCGTGATGATAATT 57.933 36.000 0.00 0.00 45.89 1.40
4431 11911 6.672266 AGTGGATACTTCCGTGATGATAAT 57.328 37.500 0.00 0.00 45.89 1.28
4432 11912 6.479972 AAGTGGATACTTCCGTGATGATAA 57.520 37.500 0.00 0.00 43.53 1.75
4445 11925 6.479972 TTTATCGTCATGGAAGTGGATACT 57.520 37.500 0.00 0.00 39.32 2.12
4446 11926 6.089551 CGATTTATCGTCATGGAAGTGGATAC 59.910 42.308 4.03 0.00 44.74 2.24
4447 11927 6.156519 CGATTTATCGTCATGGAAGTGGATA 58.843 40.000 4.03 0.00 44.74 2.59
4448 11928 4.991056 CGATTTATCGTCATGGAAGTGGAT 59.009 41.667 4.03 0.00 44.74 3.41
4449 11929 4.368315 CGATTTATCGTCATGGAAGTGGA 58.632 43.478 4.03 0.00 44.74 4.02
4450 11930 4.715520 CGATTTATCGTCATGGAAGTGG 57.284 45.455 4.03 0.00 44.74 4.00
4463 11943 1.197055 TCTGTGACGCGCGATTTATC 58.803 50.000 39.36 23.49 0.00 1.75
4464 11944 1.588404 CTTCTGTGACGCGCGATTTAT 59.412 47.619 39.36 14.54 0.00 1.40
4465 11945 0.989164 CTTCTGTGACGCGCGATTTA 59.011 50.000 39.36 18.32 0.00 1.40
4466 11946 0.944311 ACTTCTGTGACGCGCGATTT 60.944 50.000 39.36 15.50 0.00 2.17
4467 11947 1.372997 ACTTCTGTGACGCGCGATT 60.373 52.632 39.36 16.45 0.00 3.34
4468 11948 2.088763 CACTTCTGTGACGCGCGAT 61.089 57.895 39.36 21.24 46.55 4.58
4469 11949 2.729491 CACTTCTGTGACGCGCGA 60.729 61.111 39.36 13.15 46.55 5.87
4470 11950 4.415501 GCACTTCTGTGACGCGCG 62.416 66.667 30.96 30.96 46.55 6.86
4471 11951 2.105960 AAAGCACTTCTGTGACGCGC 62.106 55.000 5.73 0.00 46.55 6.86
4472 11952 0.111089 GAAAGCACTTCTGTGACGCG 60.111 55.000 3.53 3.53 46.55 6.01
4473 11953 0.111089 CGAAAGCACTTCTGTGACGC 60.111 55.000 0.00 0.00 46.55 5.19
4474 11954 1.190323 GACGAAAGCACTTCTGTGACG 59.810 52.381 0.00 0.00 46.55 4.35
4475 11955 2.201732 TGACGAAAGCACTTCTGTGAC 58.798 47.619 0.00 0.00 46.55 3.67
4476 11956 2.595124 TGACGAAAGCACTTCTGTGA 57.405 45.000 0.00 0.00 46.55 3.58
4477 11957 2.032549 CCTTGACGAAAGCACTTCTGTG 60.033 50.000 0.00 0.00 46.37 3.66
4478 11958 2.213499 CCTTGACGAAAGCACTTCTGT 58.787 47.619 0.00 0.00 34.24 3.41
4479 11959 1.532868 CCCTTGACGAAAGCACTTCTG 59.467 52.381 0.00 0.00 34.24 3.02
4480 11960 1.141053 ACCCTTGACGAAAGCACTTCT 59.859 47.619 0.00 0.00 34.24 2.85
4481 11961 1.264288 CACCCTTGACGAAAGCACTTC 59.736 52.381 0.00 0.00 34.24 3.01
4482 11962 1.134220 TCACCCTTGACGAAAGCACTT 60.134 47.619 0.00 0.00 34.24 3.16
4483 11963 0.468226 TCACCCTTGACGAAAGCACT 59.532 50.000 0.00 0.00 34.24 4.40
4484 11964 0.586802 GTCACCCTTGACGAAAGCAC 59.413 55.000 0.00 0.00 42.86 4.40
4485 11965 3.000815 GTCACCCTTGACGAAAGCA 57.999 52.632 0.00 0.00 42.86 3.91
4493 11973 2.129146 ACGTGTCGGTCACCCTTGA 61.129 57.895 0.00 0.00 43.51 3.02
4494 11974 1.954146 CACGTGTCGGTCACCCTTG 60.954 63.158 7.58 0.00 43.51 3.61
4495 11975 2.420043 CACGTGTCGGTCACCCTT 59.580 61.111 7.58 0.00 43.51 3.95
4496 11976 3.612681 CCACGTGTCGGTCACCCT 61.613 66.667 15.65 0.00 43.51 4.34
4498 11978 3.876589 ATGCCACGTGTCGGTCACC 62.877 63.158 15.65 0.00 43.51 4.02
4499 11979 2.357034 ATGCCACGTGTCGGTCAC 60.357 61.111 15.65 0.00 43.03 3.67
4500 11980 2.048597 GATGCCACGTGTCGGTCA 60.049 61.111 15.65 4.62 0.00 4.02
4501 11981 2.813908 GGATGCCACGTGTCGGTC 60.814 66.667 15.65 4.01 0.00 4.79
4502 11982 3.621805 TGGATGCCACGTGTCGGT 61.622 61.111 15.65 0.00 0.00 4.69
4503 11983 3.118454 GTGGATGCCACGTGTCGG 61.118 66.667 15.65 0.00 44.95 4.79
4511 11991 2.266372 CCGTTACGGTGGATGCCA 59.734 61.111 16.53 0.00 42.73 4.92
4527 12007 0.850856 CGATAGCTTAACGGCGTTCC 59.149 55.000 30.35 18.01 37.29 3.62
4528 12008 0.850856 CCGATAGCTTAACGGCGTTC 59.149 55.000 30.35 15.28 40.19 3.95
4529 12009 0.529119 CCCGATAGCTTAACGGCGTT 60.529 55.000 29.36 29.36 44.45 4.84
4530 12010 1.066918 CCCGATAGCTTAACGGCGT 59.933 57.895 6.77 6.77 44.45 5.68
4531 12011 0.938168 GACCCGATAGCTTAACGGCG 60.938 60.000 4.80 4.80 44.45 6.46
4532 12012 0.938168 CGACCCGATAGCTTAACGGC 60.938 60.000 16.64 6.84 44.45 5.68
4533 12013 0.318445 CCGACCCGATAGCTTAACGG 60.318 60.000 15.59 15.59 45.24 4.44
4534 12014 0.318445 CCCGACCCGATAGCTTAACG 60.318 60.000 0.00 0.00 0.00 3.18
4535 12015 0.749049 ACCCGACCCGATAGCTTAAC 59.251 55.000 0.00 0.00 0.00 2.01
4536 12016 1.488390 AACCCGACCCGATAGCTTAA 58.512 50.000 0.00 0.00 0.00 1.85
4537 12017 1.488390 AAACCCGACCCGATAGCTTA 58.512 50.000 0.00 0.00 0.00 3.09
4538 12018 0.616891 AAAACCCGACCCGATAGCTT 59.383 50.000 0.00 0.00 0.00 3.74
4539 12019 0.107848 CAAAACCCGACCCGATAGCT 60.108 55.000 0.00 0.00 0.00 3.32
4540 12020 1.093496 CCAAAACCCGACCCGATAGC 61.093 60.000 0.00 0.00 0.00 2.97
4541 12021 0.538118 TCCAAAACCCGACCCGATAG 59.462 55.000 0.00 0.00 0.00 2.08
4542 12022 1.139455 GATCCAAAACCCGACCCGATA 59.861 52.381 0.00 0.00 0.00 2.92
4543 12023 0.107361 GATCCAAAACCCGACCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
4544 12024 1.297364 GATCCAAAACCCGACCCGA 59.703 57.895 0.00 0.00 0.00 5.14
4545 12025 1.747745 GGATCCAAAACCCGACCCG 60.748 63.158 6.95 0.00 0.00 5.28
4546 12026 1.747745 CGGATCCAAAACCCGACCC 60.748 63.158 13.41 0.00 45.58 4.46
4547 12027 1.297364 TCGGATCCAAAACCCGACC 59.703 57.895 13.41 0.00 46.17 4.79
4550 12030 1.944709 GGTTATCGGATCCAAAACCCG 59.055 52.381 21.41 4.80 44.22 5.28
4552 12032 1.944709 CGGGTTATCGGATCCAAAACC 59.055 52.381 22.91 22.91 39.09 3.27
4553 12033 2.635714 ACGGGTTATCGGATCCAAAAC 58.364 47.619 13.41 11.86 0.00 2.43
4554 12034 3.353370 AACGGGTTATCGGATCCAAAA 57.647 42.857 13.41 0.00 0.00 2.44
4555 12035 4.190772 GTTAACGGGTTATCGGATCCAAA 58.809 43.478 13.41 0.00 0.00 3.28
4556 12036 3.197333 TGTTAACGGGTTATCGGATCCAA 59.803 43.478 13.41 0.00 0.00 3.53
4557 12037 2.765135 TGTTAACGGGTTATCGGATCCA 59.235 45.455 13.41 0.00 0.00 3.41
4558 12038 3.387397 CTGTTAACGGGTTATCGGATCC 58.613 50.000 6.53 0.00 0.00 3.36
4559 12039 2.798847 GCTGTTAACGGGTTATCGGATC 59.201 50.000 16.13 0.00 0.00 3.36
4560 12040 2.484241 GGCTGTTAACGGGTTATCGGAT 60.484 50.000 16.13 0.00 0.00 4.18
4561 12041 1.134729 GGCTGTTAACGGGTTATCGGA 60.135 52.381 16.13 0.00 0.00 4.55
4562 12042 1.292992 GGCTGTTAACGGGTTATCGG 58.707 55.000 16.13 4.75 0.00 4.18
4563 12043 1.292992 GGGCTGTTAACGGGTTATCG 58.707 55.000 16.13 0.00 0.00 2.92
4564 12044 1.671979 GGGGCTGTTAACGGGTTATC 58.328 55.000 16.13 0.00 0.00 1.75
4565 12045 0.107557 CGGGGCTGTTAACGGGTTAT 60.108 55.000 16.13 0.00 0.00 1.89
4566 12046 1.190833 TCGGGGCTGTTAACGGGTTA 61.191 55.000 16.13 0.00 0.00 2.85
4567 12047 1.844544 ATCGGGGCTGTTAACGGGTT 61.845 55.000 16.13 0.00 0.00 4.11
4568 12048 2.248086 GATCGGGGCTGTTAACGGGT 62.248 60.000 16.13 0.00 0.00 5.28
4569 12049 1.523032 GATCGGGGCTGTTAACGGG 60.523 63.158 16.13 5.39 0.00 5.28
4570 12050 0.391927 TTGATCGGGGCTGTTAACGG 60.392 55.000 10.24 10.24 0.00 4.44
4571 12051 1.330521 CATTGATCGGGGCTGTTAACG 59.669 52.381 0.26 0.00 0.00 3.18
4572 12052 1.676006 CCATTGATCGGGGCTGTTAAC 59.324 52.381 0.00 0.00 0.00 2.01
4573 12053 1.409521 CCCATTGATCGGGGCTGTTAA 60.410 52.381 4.19 0.00 40.35 2.01
4574 12054 0.182537 CCCATTGATCGGGGCTGTTA 59.817 55.000 4.19 0.00 40.35 2.41
4575 12055 1.076777 CCCATTGATCGGGGCTGTT 60.077 57.895 4.19 0.00 40.35 3.16
4576 12056 2.000701 TCCCATTGATCGGGGCTGT 61.001 57.895 11.13 0.00 44.62 4.40
4577 12057 2.918248 TCCCATTGATCGGGGCTG 59.082 61.111 11.13 0.00 44.62 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.