Multiple sequence alignment - TraesCS5D01G234100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G234100 chr5D 100.000 6756 0 0 1 6756 341246960 341240205 0.000000e+00 12477.0
1 TraesCS5D01G234100 chr5D 92.092 1530 99 10 4204 5718 341532380 341530858 0.000000e+00 2135.0
2 TraesCS5D01G234100 chr5D 89.678 1492 134 12 4217 5693 556722660 556721174 0.000000e+00 1884.0
3 TraesCS5D01G234100 chr5D 87.135 1096 119 8 4599 5693 560107204 560106130 0.000000e+00 1223.0
4 TraesCS5D01G234100 chr5D 86.306 628 69 10 4204 4820 341261497 341260876 0.000000e+00 667.0
5 TraesCS5D01G234100 chr5D 79.647 850 100 42 325 1145 341312426 341311621 1.660000e-150 544.0
6 TraesCS5D01G234100 chr5D 86.029 408 51 5 3696 4100 445393668 445394072 3.740000e-117 433.0
7 TraesCS5D01G234100 chr5D 88.319 351 41 0 4217 4567 560107721 560107371 8.100000e-114 422.0
8 TraesCS5D01G234100 chr5D 80.726 441 55 18 801 1223 341533300 341532872 3.930000e-82 316.0
9 TraesCS5D01G234100 chr5D 90.270 185 9 2 166 345 341314159 341313979 4.070000e-57 233.0
10 TraesCS5D01G234100 chr5D 90.798 163 15 0 996 1158 556723223 556723061 1.140000e-52 219.0
11 TraesCS5D01G234100 chr5D 87.931 174 20 1 996 1168 560108122 560107949 3.190000e-48 204.0
12 TraesCS5D01G234100 chr5D 88.028 142 13 4 6618 6756 61477187 61477047 1.510000e-36 165.0
13 TraesCS5D01G234100 chr5D 88.073 109 5 2 16 123 341314268 341314167 9.200000e-24 122.0
14 TraesCS5D01G234100 chr5B 92.586 2954 159 30 2825 5763 400775281 400778189 0.000000e+00 4187.0
15 TraesCS5D01G234100 chr5B 92.474 1528 93 11 4204 5718 400999122 400997604 0.000000e+00 2165.0
16 TraesCS5D01G234100 chr5B 86.235 1482 174 21 4244 5711 400564243 400562778 0.000000e+00 1580.0
17 TraesCS5D01G234100 chr5B 91.505 671 26 6 137 803 400766064 400766707 0.000000e+00 894.0
18 TraesCS5D01G234100 chr5B 88.504 722 44 19 6036 6756 400780874 400781557 0.000000e+00 837.0
19 TraesCS5D01G234100 chr5B 89.696 592 24 19 789 1357 400773023 400773600 0.000000e+00 721.0
20 TraesCS5D01G234100 chr5B 82.561 820 65 29 8 815 400934044 400933291 0.000000e+00 651.0
21 TraesCS5D01G234100 chr5B 91.572 439 26 4 1342 1777 400773759 400774189 4.510000e-166 595.0
22 TraesCS5D01G234100 chr5B 88.767 454 45 6 2238 2688 400774165 400774615 9.900000e-153 551.0
23 TraesCS5D01G234100 chr5B 81.170 393 47 16 846 1223 400999973 400999593 2.380000e-74 291.0
24 TraesCS5D01G234100 chr5B 80.153 393 43 14 3713 4101 543217957 543218318 1.870000e-65 261.0
25 TraesCS5D01G234100 chr5B 92.941 170 10 1 5844 6011 400780556 400780725 5.230000e-61 246.0
26 TraesCS5D01G234100 chr5B 74.052 686 130 38 2779 3440 548097409 548096748 3.150000e-58 237.0
27 TraesCS5D01G234100 chr5B 84.000 250 35 5 1992 2238 684893129 684892882 1.130000e-57 235.0
28 TraesCS5D01G234100 chr5B 86.175 217 25 5 6332 6547 436099005 436098793 5.270000e-56 230.0
29 TraesCS5D01G234100 chr5B 80.198 303 33 12 3805 4107 622078467 622078742 1.150000e-47 202.0
30 TraesCS5D01G234100 chr5B 88.652 141 12 4 6618 6756 69128739 69128877 1.170000e-37 169.0
31 TraesCS5D01G234100 chr5B 89.286 140 8 4 6618 6756 593555001 593555134 1.170000e-37 169.0
32 TraesCS5D01G234100 chr5B 88.652 141 9 6 6618 6756 491577889 491578024 1.510000e-36 165.0
33 TraesCS5D01G234100 chr5A 95.349 1806 68 6 4208 6000 442506070 442504268 0.000000e+00 2856.0
34 TraesCS5D01G234100 chr5A 91.830 1530 105 11 4204 5718 442681600 442680076 0.000000e+00 2115.0
35 TraesCS5D01G234100 chr5A 89.319 1395 52 32 2 1350 442510152 442508809 0.000000e+00 1661.0
36 TraesCS5D01G234100 chr5A 90.266 976 84 11 2859 3827 442507944 442506973 0.000000e+00 1266.0
37 TraesCS5D01G234100 chr5A 89.730 740 61 8 6029 6756 442504169 442503433 0.000000e+00 931.0
38 TraesCS5D01G234100 chr5A 90.805 435 40 0 5277 5711 442291222 442290788 3.510000e-162 582.0
39 TraesCS5D01G234100 chr5A 89.357 451 40 7 2243 2688 442508420 442507973 1.650000e-155 560.0
40 TraesCS5D01G234100 chr5A 86.829 410 33 8 1379 1772 442508810 442508406 8.040000e-119 438.0
41 TraesCS5D01G234100 chr5A 90.850 306 24 4 3913 4217 442506967 442506665 2.270000e-109 407.0
42 TraesCS5D01G234100 chr5A 81.352 488 51 24 801 1273 442682567 442682105 1.790000e-95 361.0
43 TraesCS5D01G234100 chr5A 78.555 443 64 14 1825 2237 3697383 3697824 5.200000e-66 263.0
44 TraesCS5D01G234100 chr5A 85.306 245 12 12 191 434 442554777 442554556 1.470000e-56 231.0
45 TraesCS5D01G234100 chr5A 83.806 247 34 5 1995 2237 35691733 35691489 5.270000e-56 230.0
46 TraesCS5D01G234100 chr5A 89.881 168 12 3 986 1148 442294359 442294192 1.910000e-50 211.0
47 TraesCS5D01G234100 chr5A 79.439 214 27 7 431 642 442543654 442543456 1.180000e-27 135.0
48 TraesCS5D01G234100 chr5A 86.555 119 4 6 1 114 442554888 442554777 3.310000e-23 121.0
49 TraesCS5D01G234100 chr4A 89.204 1482 131 10 4239 5692 605086911 605085431 0.000000e+00 1823.0
50 TraesCS5D01G234100 chr4A 90.419 167 16 0 996 1162 605087318 605087152 3.170000e-53 220.0
51 TraesCS5D01G234100 chr3D 89.421 397 33 5 3707 4099 328700468 328700077 6.090000e-135 492.0
52 TraesCS5D01G234100 chr3D 86.087 115 13 3 6347 6459 13926055 13925942 3.310000e-23 121.0
53 TraesCS5D01G234100 chr7D 86.139 404 49 5 3696 4099 636704828 636704432 4.840000e-116 429.0
54 TraesCS5D01G234100 chr7D 79.596 446 49 16 1818 2240 30246069 30245643 1.430000e-71 281.0
55 TraesCS5D01G234100 chr7D 79.000 400 53 17 3702 4099 170582068 170582438 1.880000e-60 244.0
56 TraesCS5D01G234100 chr7D 83.505 194 28 3 6353 6544 619198561 619198370 1.940000e-40 178.0
57 TraesCS5D01G234100 chr6D 85.821 402 41 12 3702 4099 394589093 394589482 4.880000e-111 412.0
58 TraesCS5D01G234100 chr6D 85.714 140 19 1 6336 6474 312680011 312680150 5.460000e-31 147.0
59 TraesCS5D01G234100 chr4B 77.011 783 130 41 2723 3478 344464269 344465028 2.930000e-108 403.0
60 TraesCS5D01G234100 chr4B 84.352 409 43 13 3701 4103 393488447 393488054 1.370000e-101 381.0
61 TraesCS5D01G234100 chr6A 85.012 407 46 7 3696 4099 540824054 540823660 3.800000e-107 399.0
62 TraesCS5D01G234100 chr6A 79.175 485 61 16 1792 2237 592854388 592854871 3.960000e-77 300.0
63 TraesCS5D01G234100 chr4D 80.430 465 75 13 2779 3232 176780241 176780700 2.330000e-89 340.0
64 TraesCS5D01G234100 chr4D 93.525 139 6 3 6618 6756 334964318 334964453 3.190000e-48 204.0
65 TraesCS5D01G234100 chr2D 79.596 495 56 16 1786 2237 16903825 16903333 5.090000e-81 313.0
66 TraesCS5D01G234100 chr2B 78.659 492 56 20 1792 2238 10612067 10612554 1.430000e-71 281.0
67 TraesCS5D01G234100 chrUn 78.017 464 71 10 1805 2238 253161732 253162194 5.200000e-66 263.0
68 TraesCS5D01G234100 chrUn 81.132 106 14 5 6212 6311 75090472 75090577 5.620000e-11 80.5
69 TraesCS5D01G234100 chr6B 82.748 313 36 5 3792 4099 127042388 127042089 5.200000e-66 263.0
70 TraesCS5D01G234100 chr6B 79.470 302 35 11 3806 4107 438644238 438643964 8.940000e-44 189.0
71 TraesCS5D01G234100 chr6B 88.489 139 12 2 6618 6756 622647122 622646988 1.510000e-36 165.0
72 TraesCS5D01G234100 chr6B 79.894 189 26 4 6331 6519 658649335 658649511 1.980000e-25 128.0
73 TraesCS5D01G234100 chr6B 82.517 143 24 1 6332 6474 514284931 514284790 2.560000e-24 124.0
74 TraesCS5D01G234100 chr3B 89.375 160 16 1 2078 2237 765603801 765603959 4.130000e-47 200.0
75 TraesCS5D01G234100 chr3B 75.618 283 50 16 2720 2992 120174222 120173949 9.200000e-24 122.0
76 TraesCS5D01G234100 chr3B 77.841 176 25 11 6134 6305 130054379 130054544 5.580000e-16 97.1
77 TraesCS5D01G234100 chr3A 88.485 165 19 0 2078 2242 689590733 689590897 4.130000e-47 200.0
78 TraesCS5D01G234100 chr3A 79.699 133 17 5 6134 6265 99252795 99252918 3.360000e-13 87.9
79 TraesCS5D01G234100 chr7B 81.048 248 41 4 1995 2240 606305833 606305590 6.910000e-45 193.0
80 TraesCS5D01G234100 chr7B 83.240 179 25 5 6369 6545 714754143 714753968 7.010000e-35 159.0
81 TraesCS5D01G234100 chr7B 73.333 255 57 10 2718 2965 612351 612601 4.340000e-12 84.2
82 TraesCS5D01G234100 chr2A 88.489 139 13 3 6618 6756 746632138 746632003 1.510000e-36 165.0
83 TraesCS5D01G234100 chr2A 81.481 135 16 6 6134 6265 760755673 760755545 1.200000e-17 102.0
84 TraesCS5D01G234100 chr1D 88.194 144 9 7 6618 6756 296736582 296736442 1.510000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G234100 chr5D 341240205 341246960 6755 True 12477.000000 12477 100.000000 1 6756 1 chr5D.!!$R2 6755
1 TraesCS5D01G234100 chr5D 341530858 341533300 2442 True 1225.500000 2135 86.409000 801 5718 2 chr5D.!!$R5 4917
2 TraesCS5D01G234100 chr5D 556721174 556723223 2049 True 1051.500000 1884 90.238000 996 5693 2 chr5D.!!$R6 4697
3 TraesCS5D01G234100 chr5D 341260876 341261497 621 True 667.000000 667 86.306000 4204 4820 1 chr5D.!!$R3 616
4 TraesCS5D01G234100 chr5D 560106130 560108122 1992 True 616.333333 1223 87.795000 996 5693 3 chr5D.!!$R7 4697
5 TraesCS5D01G234100 chr5D 341311621 341314268 2647 True 299.666667 544 85.996667 16 1145 3 chr5D.!!$R4 1129
6 TraesCS5D01G234100 chr5B 400562778 400564243 1465 True 1580.000000 1580 86.235000 4244 5711 1 chr5B.!!$R1 1467
7 TraesCS5D01G234100 chr5B 400997604 400999973 2369 True 1228.000000 2165 86.822000 846 5718 2 chr5B.!!$R6 4872
8 TraesCS5D01G234100 chr5B 400773023 400781557 8534 False 1189.500000 4187 90.677667 789 6756 6 chr5B.!!$F7 5967
9 TraesCS5D01G234100 chr5B 400766064 400766707 643 False 894.000000 894 91.505000 137 803 1 chr5B.!!$F2 666
10 TraesCS5D01G234100 chr5B 400933291 400934044 753 True 651.000000 651 82.561000 8 815 1 chr5B.!!$R2 807
11 TraesCS5D01G234100 chr5B 548096748 548097409 661 True 237.000000 237 74.052000 2779 3440 1 chr5B.!!$R4 661
12 TraesCS5D01G234100 chr5A 442680076 442682567 2491 True 1238.000000 2115 86.591000 801 5718 2 chr5A.!!$R6 4917
13 TraesCS5D01G234100 chr5A 442503433 442510152 6719 True 1159.857143 2856 90.242857 2 6756 7 chr5A.!!$R4 6754
14 TraesCS5D01G234100 chr5A 442290788 442294359 3571 True 396.500000 582 90.343000 986 5711 2 chr5A.!!$R3 4725
15 TraesCS5D01G234100 chr4A 605085431 605087318 1887 True 1021.500000 1823 89.811500 996 5692 2 chr4A.!!$R1 4696
16 TraesCS5D01G234100 chr4B 344464269 344465028 759 False 403.000000 403 77.011000 2723 3478 1 chr4B.!!$F1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 2171 0.108520 GTGGGACAGCGGAATAACGA 60.109 55.0 0.00 0.0 41.80 3.85 F
1928 4210 0.040067 GCACCCTTTTCTCAACAGCG 60.040 55.0 0.00 0.0 0.00 5.18 F
2052 4334 0.034337 TCGGGTTGAACAGCCAGTAC 59.966 55.0 9.64 0.0 44.25 2.73 F
2054 4336 0.034337 GGGTTGAACAGCCAGTACGA 59.966 55.0 9.64 0.0 43.39 3.43 F
2175 4457 0.105224 CCGGCATATCGTGGTTACCA 59.895 55.0 0.00 0.0 0.00 3.25 F
2413 4699 0.591170 CCTGTGCGACCGTTTTCAAT 59.409 50.0 0.00 0.0 0.00 2.57 F
4393 8118 0.324738 ATCTCTCCGGCCAAGTCTCA 60.325 55.0 2.24 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 4315 0.034337 GTACTGGCTGTTCAACCCGA 59.966 55.000 1.31 0.00 0.00 5.14 R
2795 5681 0.249657 GCGAGGATCAGAAGCGGAAT 60.250 55.000 0.00 0.00 33.17 3.01 R
3975 6900 0.179059 TTGAGCTGTCGTTTCTGGCA 60.179 50.000 0.00 0.00 0.00 4.92 R
4052 6977 7.334171 GTGGTAATTACACCTGGTTACGTATTT 59.666 37.037 17.16 2.82 39.50 1.40 R
4327 8052 1.588674 CCTGGTTGTCGTACTTGCAA 58.411 50.000 0.00 0.00 0.00 4.08 R
4635 8504 3.813596 CCTACGATGGCACCAAGC 58.186 61.111 0.00 0.00 44.65 4.01 R
6613 13195 0.243636 CCAAAATGCCGTTCTCACCC 59.756 55.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 206 3.489355 TGGACGTAGTACTGTTCTTCCA 58.511 45.455 5.39 11.25 45.52 3.53
435 2029 2.660064 GGACGGCACCTCACCTCAT 61.660 63.158 0.00 0.00 0.00 2.90
436 2030 1.153549 GACGGCACCTCACCTCATC 60.154 63.158 0.00 0.00 0.00 2.92
437 2031 1.608717 GACGGCACCTCACCTCATCT 61.609 60.000 0.00 0.00 0.00 2.90
438 2032 1.142748 CGGCACCTCACCTCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
439 2033 1.607801 CGGCACCTCACCTCATCTCA 61.608 60.000 0.00 0.00 0.00 3.27
445 2039 1.277273 CCTCACCTCATCTCAGTGCAA 59.723 52.381 0.00 0.00 0.00 4.08
458 2052 1.134729 CAGTGCAACCAAAGCCAACTT 60.135 47.619 0.00 0.00 37.80 2.66
461 2055 1.134551 TGCAACCAAAGCCAACTTTCC 60.135 47.619 0.00 0.00 44.41 3.13
573 2171 0.108520 GTGGGACAGCGGAATAACGA 60.109 55.000 0.00 0.00 41.80 3.85
654 2257 2.607750 ACCTCCGGGTGACAGCAT 60.608 61.111 0.00 0.00 45.43 3.79
655 2258 2.224159 ACCTCCGGGTGACAGCATT 61.224 57.895 0.00 0.00 45.43 3.56
776 2392 2.413437 ATTCGGATCGAGCGAGGCAG 62.413 60.000 0.00 0.00 37.14 4.85
905 2539 3.880846 CGCGCATTGCCCTTCTCC 61.881 66.667 8.75 0.00 42.08 3.71
908 2542 2.830370 GCATTGCCCTTCTCCCGG 60.830 66.667 0.00 0.00 0.00 5.73
935 2580 3.093057 TGGTAGAGAGCTCTTGTTCCTC 58.907 50.000 19.36 2.97 40.93 3.71
937 2582 1.917872 AGAGAGCTCTTGTTCCTCGT 58.082 50.000 19.36 0.00 36.31 4.18
939 2584 1.542030 GAGAGCTCTTGTTCCTCGTCA 59.458 52.381 19.36 0.00 0.00 4.35
940 2585 1.271102 AGAGCTCTTGTTCCTCGTCAC 59.729 52.381 11.45 0.00 0.00 3.67
941 2586 1.000163 GAGCTCTTGTTCCTCGTCACA 60.000 52.381 6.43 0.00 0.00 3.58
942 2587 1.412710 AGCTCTTGTTCCTCGTCACAA 59.587 47.619 0.00 0.00 0.00 3.33
943 2588 1.527311 GCTCTTGTTCCTCGTCACAAC 59.473 52.381 0.00 0.00 0.00 3.32
975 2620 1.528129 GACTGCCCCTTGACTTGAAG 58.472 55.000 0.00 0.00 0.00 3.02
1224 2953 3.972950 ATATCTCGGTTGAGTCACTCG 57.027 47.619 0.00 7.71 43.09 4.18
1456 3362 3.053455 GTCGGGCTTCTCGATTATTCTG 58.947 50.000 0.00 0.00 38.93 3.02
1461 3374 4.503296 GGGCTTCTCGATTATTCTGGCTAA 60.503 45.833 0.00 0.00 0.00 3.09
1494 3407 1.555533 CTAGGCGAAGAGGAAACCCTT 59.444 52.381 0.00 0.00 33.25 3.95
1502 3415 0.392595 GAGGAAACCCTTGCTACCGG 60.393 60.000 0.00 0.00 32.59 5.28
1529 3442 2.827642 GGAGGCTGGATGCTGCAC 60.828 66.667 17.41 10.40 42.39 4.57
1562 3480 4.085733 CCACCTCAAAGAGAAGAGAGAGA 58.914 47.826 0.00 0.00 33.74 3.10
1575 3831 6.668645 AGAAGAGAGAGAGTTTAGAGGCATA 58.331 40.000 0.00 0.00 0.00 3.14
1652 3920 5.496133 AGTAACGTTGTAGCGATCTGTAT 57.504 39.130 11.99 0.00 35.59 2.29
1658 3926 4.207224 CGTTGTAGCGATCTGTATCTTTGG 59.793 45.833 0.00 0.00 0.00 3.28
1666 3934 5.056480 CGATCTGTATCTTTGGTGCCAATA 58.944 41.667 4.32 0.00 35.70 1.90
1681 3949 5.278957 GGTGCCAATACATTCAAACTCTTGT 60.279 40.000 0.00 0.00 33.94 3.16
1757 4039 1.001293 TGACCTCCGCATCATGCTATC 59.999 52.381 8.30 0.00 42.25 2.08
1758 4040 0.322975 ACCTCCGCATCATGCTATCC 59.677 55.000 8.30 0.00 42.25 2.59
1759 4041 0.322648 CCTCCGCATCATGCTATCCA 59.677 55.000 8.30 0.00 42.25 3.41
1763 4045 2.093500 TCCGCATCATGCTATCCATACC 60.093 50.000 8.30 0.00 42.25 2.73
1764 4046 2.355007 CCGCATCATGCTATCCATACCA 60.355 50.000 8.30 0.00 42.25 3.25
1765 4047 3.538591 CGCATCATGCTATCCATACCAT 58.461 45.455 8.30 0.00 42.25 3.55
1766 4048 3.943381 CGCATCATGCTATCCATACCATT 59.057 43.478 8.30 0.00 42.25 3.16
1772 4054 9.797556 CATCATGCTATCCATACCATTATTTTG 57.202 33.333 0.00 0.00 31.47 2.44
1787 4069 7.252708 CCATTATTTTGGTTACCGAACTTACC 58.747 38.462 3.08 0.00 35.74 2.85
1788 4070 6.479095 TTATTTTGGTTACCGAACTTACCG 57.521 37.500 3.08 0.00 35.74 4.02
1789 4071 3.742433 TTTGGTTACCGAACTTACCGA 57.258 42.857 0.00 0.00 35.74 4.69
1790 4072 3.742433 TTGGTTACCGAACTTACCGAA 57.258 42.857 0.00 0.00 35.74 4.30
1792 4074 2.288763 TGGTTACCGAACTTACCGAACC 60.289 50.000 0.00 0.00 35.65 3.62
1793 4075 2.337583 GTTACCGAACTTACCGAACCC 58.662 52.381 0.00 0.00 32.40 4.11
1794 4076 0.894835 TACCGAACTTACCGAACCCC 59.105 55.000 0.00 0.00 0.00 4.95
1797 4079 0.108472 CGAACTTACCGAACCCCCTC 60.108 60.000 0.00 0.00 0.00 4.30
1798 4080 0.108472 GAACTTACCGAACCCCCTCG 60.108 60.000 0.00 0.00 38.58 4.63
1799 4081 0.542702 AACTTACCGAACCCCCTCGA 60.543 55.000 0.00 0.00 41.44 4.04
1800 4082 0.969409 ACTTACCGAACCCCCTCGAG 60.969 60.000 5.13 5.13 41.44 4.04
1801 4083 0.682209 CTTACCGAACCCCCTCGAGA 60.682 60.000 15.71 0.00 41.44 4.04
1802 4084 0.251742 TTACCGAACCCCCTCGAGAA 60.252 55.000 15.71 0.00 41.44 2.87
1805 4087 1.669440 CGAACCCCCTCGAGAAACA 59.331 57.895 15.71 0.00 41.44 2.83
1806 4088 0.669625 CGAACCCCCTCGAGAAACAC 60.670 60.000 15.71 0.00 41.44 3.32
1807 4089 0.685660 GAACCCCCTCGAGAAACACT 59.314 55.000 15.71 0.00 0.00 3.55
1808 4090 1.071857 GAACCCCCTCGAGAAACACTT 59.928 52.381 15.71 0.00 0.00 3.16
1811 4093 3.716431 ACCCCCTCGAGAAACACTTATA 58.284 45.455 15.71 0.00 0.00 0.98
1812 4094 3.450096 ACCCCCTCGAGAAACACTTATAC 59.550 47.826 15.71 0.00 0.00 1.47
1813 4095 3.181468 CCCCCTCGAGAAACACTTATACC 60.181 52.174 15.71 0.00 0.00 2.73
1814 4096 3.490419 CCCCTCGAGAAACACTTATACCG 60.490 52.174 15.71 0.00 0.00 4.02
1815 4097 3.490419 CCCTCGAGAAACACTTATACCGG 60.490 52.174 15.71 0.00 0.00 5.28
1816 4098 3.490419 CCTCGAGAAACACTTATACCGGG 60.490 52.174 15.71 0.00 0.00 5.73
1817 4099 2.159198 TCGAGAAACACTTATACCGGGC 60.159 50.000 6.32 0.00 0.00 6.13
1818 4100 2.417651 CGAGAAACACTTATACCGGGCA 60.418 50.000 6.32 0.00 0.00 5.36
1859 4141 9.734620 TTTTGAATTCAAACAATCAGAGTGTAG 57.265 29.630 28.78 0.57 44.56 2.74
1860 4142 8.450578 TTGAATTCAAACAATCAGAGTGTAGT 57.549 30.769 18.45 0.00 32.11 2.73
1861 4143 8.450578 TGAATTCAAACAATCAGAGTGTAGTT 57.549 30.769 5.45 0.00 0.00 2.24
1867 4149 9.337396 TCAAACAATCAGAGTGTAGTTAAATGT 57.663 29.630 3.44 0.00 0.00 2.71
1871 4153 8.883731 ACAATCAGAGTGTAGTTAAATGTATGC 58.116 33.333 0.47 0.00 0.00 3.14
1872 4154 8.338259 CAATCAGAGTGTAGTTAAATGTATGCC 58.662 37.037 0.00 0.00 0.00 4.40
1874 4156 7.564793 TCAGAGTGTAGTTAAATGTATGCCAT 58.435 34.615 0.00 0.00 34.36 4.40
1875 4157 7.710907 TCAGAGTGTAGTTAAATGTATGCCATC 59.289 37.037 0.00 0.00 31.75 3.51
1877 4159 7.928706 AGAGTGTAGTTAAATGTATGCCATCTC 59.071 37.037 0.00 0.00 31.75 2.75
1878 4160 7.796054 AGTGTAGTTAAATGTATGCCATCTCT 58.204 34.615 0.00 0.00 31.75 3.10
1879 4161 8.924303 AGTGTAGTTAAATGTATGCCATCTCTA 58.076 33.333 0.00 0.00 31.75 2.43
1880 4162 8.979574 GTGTAGTTAAATGTATGCCATCTCTAC 58.020 37.037 0.00 0.00 31.75 2.59
1881 4163 8.148351 TGTAGTTAAATGTATGCCATCTCTACC 58.852 37.037 0.00 0.00 31.75 3.18
1882 4164 7.136822 AGTTAAATGTATGCCATCTCTACCA 57.863 36.000 0.00 0.00 31.75 3.25
1883 4165 6.992715 AGTTAAATGTATGCCATCTCTACCAC 59.007 38.462 0.00 0.00 31.75 4.16
1884 4166 4.357918 AATGTATGCCATCTCTACCACC 57.642 45.455 0.00 0.00 31.75 4.61
1885 4167 2.758130 TGTATGCCATCTCTACCACCA 58.242 47.619 0.00 0.00 0.00 4.17
1886 4168 3.317406 TGTATGCCATCTCTACCACCAT 58.683 45.455 0.00 0.00 0.00 3.55
1887 4169 4.488770 TGTATGCCATCTCTACCACCATA 58.511 43.478 0.00 0.00 0.00 2.74
1889 4171 4.630644 ATGCCATCTCTACCACCATAAG 57.369 45.455 0.00 0.00 0.00 1.73
1891 4173 4.234550 TGCCATCTCTACCACCATAAGAT 58.765 43.478 0.00 0.00 0.00 2.40
1892 4174 5.402630 TGCCATCTCTACCACCATAAGATA 58.597 41.667 0.00 0.00 0.00 1.98
1893 4175 5.843969 TGCCATCTCTACCACCATAAGATAA 59.156 40.000 0.00 0.00 0.00 1.75
1894 4176 6.014242 TGCCATCTCTACCACCATAAGATAAG 60.014 42.308 0.00 0.00 0.00 1.73
1896 4178 7.382110 CCATCTCTACCACCATAAGATAAGTG 58.618 42.308 0.00 0.00 0.00 3.16
1902 4184 4.119862 CCACCATAAGATAAGTGGTCGTG 58.880 47.826 0.00 0.00 44.09 4.35
1903 4185 4.119862 CACCATAAGATAAGTGGTCGTGG 58.880 47.826 0.00 0.00 44.09 4.94
1904 4186 3.131396 CCATAAGATAAGTGGTCGTGGC 58.869 50.000 0.00 0.00 0.00 5.01
1905 4187 3.431626 CCATAAGATAAGTGGTCGTGGCA 60.432 47.826 0.00 0.00 0.00 4.92
1906 4188 2.851263 AAGATAAGTGGTCGTGGCAA 57.149 45.000 0.00 0.00 0.00 4.52
1907 4189 2.851263 AGATAAGTGGTCGTGGCAAA 57.149 45.000 0.00 0.00 0.00 3.68
1908 4190 2.699954 AGATAAGTGGTCGTGGCAAAG 58.300 47.619 0.00 0.00 0.00 2.77
1909 4191 1.737793 GATAAGTGGTCGTGGCAAAGG 59.262 52.381 0.00 0.00 0.00 3.11
1910 4192 0.887387 TAAGTGGTCGTGGCAAAGGC 60.887 55.000 0.00 0.00 40.13 4.35
1911 4193 2.902423 AAGTGGTCGTGGCAAAGGCA 62.902 55.000 0.00 0.00 43.71 4.75
1925 4207 2.452600 AAGGCACCCTTTTCTCAACA 57.547 45.000 0.00 0.00 41.69 3.33
1926 4208 1.986882 AGGCACCCTTTTCTCAACAG 58.013 50.000 0.00 0.00 0.00 3.16
1928 4210 0.040067 GCACCCTTTTCTCAACAGCG 60.040 55.000 0.00 0.00 0.00 5.18
1929 4211 0.040067 CACCCTTTTCTCAACAGCGC 60.040 55.000 0.00 0.00 0.00 5.92
1930 4212 1.207593 CCCTTTTCTCAACAGCGCG 59.792 57.895 0.00 0.00 0.00 6.86
1945 4227 2.251371 GCGTTGCGGGTTCAAGTC 59.749 61.111 0.00 0.00 0.00 3.01
1946 4228 2.251642 GCGTTGCGGGTTCAAGTCT 61.252 57.895 0.00 0.00 0.00 3.24
1947 4229 1.782028 GCGTTGCGGGTTCAAGTCTT 61.782 55.000 0.00 0.00 0.00 3.01
1948 4230 0.041312 CGTTGCGGGTTCAAGTCTTG 60.041 55.000 6.21 6.21 0.00 3.02
1950 4232 1.002792 GTTGCGGGTTCAAGTCTTGTC 60.003 52.381 12.30 7.12 0.00 3.18
1952 4234 1.149148 GCGGGTTCAAGTCTTGTCTC 58.851 55.000 12.30 6.44 0.00 3.36
1953 4235 1.540363 GCGGGTTCAAGTCTTGTCTCA 60.540 52.381 12.30 0.00 0.00 3.27
1954 4236 2.135933 CGGGTTCAAGTCTTGTCTCAC 58.864 52.381 12.30 5.67 0.00 3.51
1956 4238 1.527311 GGTTCAAGTCTTGTCTCACGC 59.473 52.381 12.30 0.00 0.00 5.34
1957 4239 2.201732 GTTCAAGTCTTGTCTCACGCA 58.798 47.619 12.30 0.00 0.00 5.24
1958 4240 2.802816 GTTCAAGTCTTGTCTCACGCAT 59.197 45.455 12.30 0.00 0.00 4.73
1959 4241 3.111853 TCAAGTCTTGTCTCACGCATT 57.888 42.857 12.30 0.00 0.00 3.56
1960 4242 3.466836 TCAAGTCTTGTCTCACGCATTT 58.533 40.909 12.30 0.00 0.00 2.32
1961 4243 3.876914 TCAAGTCTTGTCTCACGCATTTT 59.123 39.130 12.30 0.00 0.00 1.82
1962 4244 5.053811 TCAAGTCTTGTCTCACGCATTTTA 58.946 37.500 12.30 0.00 0.00 1.52
1963 4245 5.525745 TCAAGTCTTGTCTCACGCATTTTAA 59.474 36.000 12.30 0.00 0.00 1.52
1964 4246 6.204688 TCAAGTCTTGTCTCACGCATTTTAAT 59.795 34.615 12.30 0.00 0.00 1.40
1966 4248 6.970484 AGTCTTGTCTCACGCATTTTAATTT 58.030 32.000 0.00 0.00 0.00 1.82
1968 4250 7.041098 AGTCTTGTCTCACGCATTTTAATTTCT 60.041 33.333 0.00 0.00 0.00 2.52
1969 4251 7.591426 GTCTTGTCTCACGCATTTTAATTTCTT 59.409 33.333 0.00 0.00 0.00 2.52
1971 4253 8.641499 TTGTCTCACGCATTTTAATTTCTTTT 57.359 26.923 0.00 0.00 0.00 2.27
2007 4289 0.966179 AAAAATGCCAGGGGTCGAAC 59.034 50.000 0.00 0.00 0.00 3.95
2008 4290 0.112412 AAAATGCCAGGGGTCGAACT 59.888 50.000 0.00 0.00 0.00 3.01
2009 4291 0.322546 AAATGCCAGGGGTCGAACTC 60.323 55.000 0.00 0.00 0.00 3.01
2010 4292 2.521958 AATGCCAGGGGTCGAACTCG 62.522 60.000 0.00 0.00 41.45 4.18
2012 4294 4.796231 CCAGGGGTCGAACTCGCG 62.796 72.222 0.00 0.00 39.60 5.87
2013 4295 3.744719 CAGGGGTCGAACTCGCGA 61.745 66.667 9.26 9.26 39.60 5.87
2021 4303 1.973138 TCGAACTCGCGACCTTTTAG 58.027 50.000 3.71 0.00 39.60 1.85
2022 4304 0.365859 CGAACTCGCGACCTTTTAGC 59.634 55.000 3.71 0.00 0.00 3.09
2023 4305 1.425412 GAACTCGCGACCTTTTAGCA 58.575 50.000 3.71 0.00 0.00 3.49
2025 4307 1.429463 ACTCGCGACCTTTTAGCAAG 58.571 50.000 3.71 0.00 0.00 4.01
2026 4308 1.270147 ACTCGCGACCTTTTAGCAAGT 60.270 47.619 3.71 0.00 0.00 3.16
2028 4310 0.165944 CGCGACCTTTTAGCAAGTGG 59.834 55.000 0.00 0.00 0.00 4.00
2029 4311 0.109735 GCGACCTTTTAGCAAGTGGC 60.110 55.000 0.00 0.00 45.30 5.01
2038 4320 2.594592 GCAAGTGGCAGTTCGGGT 60.595 61.111 4.17 0.00 43.97 5.28
2039 4321 2.193536 GCAAGTGGCAGTTCGGGTT 61.194 57.895 4.17 0.00 43.97 4.11
2041 4323 0.817634 CAAGTGGCAGTTCGGGTTGA 60.818 55.000 4.17 0.00 0.00 3.18
2042 4324 0.106918 AAGTGGCAGTTCGGGTTGAA 60.107 50.000 0.63 0.00 0.00 2.69
2049 4331 4.473643 TTCGGGTTGAACAGCCAG 57.526 55.556 9.64 5.85 44.25 4.85
2051 4333 0.759959 TTCGGGTTGAACAGCCAGTA 59.240 50.000 9.64 0.00 44.25 2.74
2052 4334 0.034337 TCGGGTTGAACAGCCAGTAC 59.966 55.000 9.64 0.00 44.25 2.73
2053 4335 1.289109 CGGGTTGAACAGCCAGTACG 61.289 60.000 9.64 0.86 44.25 3.67
2054 4336 0.034337 GGGTTGAACAGCCAGTACGA 59.966 55.000 9.64 0.00 43.39 3.43
2055 4337 1.338769 GGGTTGAACAGCCAGTACGAT 60.339 52.381 9.64 0.00 43.39 3.73
2056 4338 2.093869 GGGTTGAACAGCCAGTACGATA 60.094 50.000 9.64 0.00 43.39 2.92
2057 4339 3.187700 GGTTGAACAGCCAGTACGATAG 58.812 50.000 0.00 0.00 46.19 2.08
2059 4341 4.106197 GTTGAACAGCCAGTACGATAGAG 58.894 47.826 0.00 0.00 41.38 2.43
2063 4345 3.142951 ACAGCCAGTACGATAGAGCTAG 58.857 50.000 0.00 0.00 41.38 3.42
2064 4346 2.486203 CAGCCAGTACGATAGAGCTAGG 59.514 54.545 0.00 0.00 41.38 3.02
2065 4347 2.106857 AGCCAGTACGATAGAGCTAGGT 59.893 50.000 0.00 0.00 41.38 3.08
2067 4349 3.436359 GCCAGTACGATAGAGCTAGGTAC 59.564 52.174 0.00 10.98 41.38 3.34
2069 4351 5.247084 CCAGTACGATAGAGCTAGGTACAT 58.753 45.833 16.93 0.00 41.38 2.29
2070 4352 5.122554 CCAGTACGATAGAGCTAGGTACATG 59.877 48.000 16.93 0.00 41.38 3.21
2071 4353 5.932883 CAGTACGATAGAGCTAGGTACATGA 59.067 44.000 16.93 0.00 41.38 3.07
2073 4355 5.888691 ACGATAGAGCTAGGTACATGATG 57.111 43.478 0.00 0.00 41.38 3.07
2074 4356 5.561679 ACGATAGAGCTAGGTACATGATGA 58.438 41.667 0.00 0.00 41.38 2.92
2077 4359 7.177568 ACGATAGAGCTAGGTACATGATGAAAT 59.822 37.037 0.00 0.00 41.38 2.17
2078 4360 8.031864 CGATAGAGCTAGGTACATGATGAAATT 58.968 37.037 0.00 0.00 39.76 1.82
2079 4361 9.149225 GATAGAGCTAGGTACATGATGAAATTG 57.851 37.037 0.00 0.00 0.00 2.32
2080 4362 6.294473 AGAGCTAGGTACATGATGAAATTGG 58.706 40.000 0.00 0.00 0.00 3.16
2081 4363 6.100279 AGAGCTAGGTACATGATGAAATTGGA 59.900 38.462 0.00 0.00 0.00 3.53
2082 4364 6.294473 AGCTAGGTACATGATGAAATTGGAG 58.706 40.000 0.00 0.00 0.00 3.86
2083 4365 5.471456 GCTAGGTACATGATGAAATTGGAGG 59.529 44.000 0.00 0.00 0.00 4.30
2085 4367 6.575244 AGGTACATGATGAAATTGGAGGTA 57.425 37.500 0.00 0.00 0.00 3.08
2086 4368 6.969043 AGGTACATGATGAAATTGGAGGTAA 58.031 36.000 0.00 0.00 0.00 2.85
2087 4369 7.410174 AGGTACATGATGAAATTGGAGGTAAA 58.590 34.615 0.00 0.00 0.00 2.01
2088 4370 7.339466 AGGTACATGATGAAATTGGAGGTAAAC 59.661 37.037 0.00 0.00 0.00 2.01
2089 4371 6.530019 ACATGATGAAATTGGAGGTAAACC 57.470 37.500 0.00 0.00 0.00 3.27
2090 4372 5.422012 ACATGATGAAATTGGAGGTAAACCC 59.578 40.000 0.00 0.00 36.42 4.11
2091 4373 4.349365 TGATGAAATTGGAGGTAAACCCC 58.651 43.478 0.00 0.00 36.42 4.95
2092 4374 4.045334 TGATGAAATTGGAGGTAAACCCCT 59.955 41.667 0.00 0.00 37.62 4.79
2093 4375 5.254267 TGATGAAATTGGAGGTAAACCCCTA 59.746 40.000 0.00 0.00 34.03 3.53
2094 4376 5.806955 TGAAATTGGAGGTAAACCCCTAT 57.193 39.130 0.00 0.00 34.03 2.57
2095 4377 5.762279 TGAAATTGGAGGTAAACCCCTATC 58.238 41.667 0.00 0.00 34.03 2.08
2097 4379 6.679303 TGAAATTGGAGGTAAACCCCTATCTA 59.321 38.462 0.00 0.00 34.03 1.98
2098 4380 6.511017 AATTGGAGGTAAACCCCTATCTAC 57.489 41.667 0.00 0.00 34.03 2.59
2101 4383 5.152934 TGGAGGTAAACCCCTATCTACATC 58.847 45.833 0.00 0.00 34.03 3.06
2102 4384 4.220163 GGAGGTAAACCCCTATCTACATCG 59.780 50.000 0.00 0.00 34.03 3.84
2104 4386 4.831710 AGGTAAACCCCTATCTACATCGAC 59.168 45.833 0.00 0.00 36.42 4.20
2106 4388 5.303845 GGTAAACCCCTATCTACATCGACTT 59.696 44.000 0.00 0.00 0.00 3.01
2107 4389 5.532664 AAACCCCTATCTACATCGACTTC 57.467 43.478 0.00 0.00 0.00 3.01
2108 4390 4.180377 ACCCCTATCTACATCGACTTCA 57.820 45.455 0.00 0.00 0.00 3.02
2109 4391 4.543689 ACCCCTATCTACATCGACTTCAA 58.456 43.478 0.00 0.00 0.00 2.69
2111 4393 5.424252 ACCCCTATCTACATCGACTTCAAAA 59.576 40.000 0.00 0.00 0.00 2.44
2112 4394 6.070424 ACCCCTATCTACATCGACTTCAAAAA 60.070 38.462 0.00 0.00 0.00 1.94
2159 4441 5.815964 AATTTCGTTCGAAATTTTTCCGG 57.184 34.783 28.35 0.00 46.38 5.14
2160 4442 2.319241 TCGTTCGAAATTTTTCCGGC 57.681 45.000 0.00 0.00 33.68 6.13
2161 4443 1.602851 TCGTTCGAAATTTTTCCGGCA 59.397 42.857 0.00 0.00 33.68 5.69
2162 4444 2.226912 TCGTTCGAAATTTTTCCGGCAT 59.773 40.909 0.00 0.00 33.68 4.40
2163 4445 3.436015 TCGTTCGAAATTTTTCCGGCATA 59.564 39.130 0.00 0.00 33.68 3.14
2164 4446 4.095185 TCGTTCGAAATTTTTCCGGCATAT 59.905 37.500 0.00 0.00 33.68 1.78
2165 4447 4.436523 CGTTCGAAATTTTTCCGGCATATC 59.563 41.667 0.00 0.00 33.68 1.63
2166 4448 4.203950 TCGAAATTTTTCCGGCATATCG 57.796 40.909 0.00 0.28 33.68 2.92
2167 4449 3.623960 TCGAAATTTTTCCGGCATATCGT 59.376 39.130 0.00 0.00 33.68 3.73
2168 4450 3.723764 CGAAATTTTTCCGGCATATCGTG 59.276 43.478 0.00 0.00 33.68 4.35
2169 4451 3.708563 AATTTTTCCGGCATATCGTGG 57.291 42.857 0.00 0.00 0.00 4.94
2170 4452 2.116827 TTTTTCCGGCATATCGTGGT 57.883 45.000 0.00 0.00 0.00 4.16
2171 4453 2.116827 TTTTCCGGCATATCGTGGTT 57.883 45.000 0.00 0.00 0.00 3.67
2172 4454 2.983907 TTTCCGGCATATCGTGGTTA 57.016 45.000 0.00 0.00 0.00 2.85
2173 4455 2.228138 TTCCGGCATATCGTGGTTAC 57.772 50.000 0.00 0.00 0.00 2.50
2174 4456 0.390124 TCCGGCATATCGTGGTTACC 59.610 55.000 0.00 0.00 0.00 2.85
2175 4457 0.105224 CCGGCATATCGTGGTTACCA 59.895 55.000 0.00 0.00 0.00 3.25
2176 4458 1.270625 CCGGCATATCGTGGTTACCAT 60.271 52.381 7.58 0.00 35.28 3.55
2177 4459 1.798223 CGGCATATCGTGGTTACCATG 59.202 52.381 16.98 16.98 41.56 3.66
2178 4460 2.151202 GGCATATCGTGGTTACCATGG 58.849 52.381 21.89 11.19 40.65 3.66
2179 4461 2.486548 GGCATATCGTGGTTACCATGGT 60.487 50.000 23.55 23.55 40.65 3.55
2180 4462 3.244284 GGCATATCGTGGTTACCATGGTA 60.244 47.826 21.05 21.05 39.99 3.25
2181 4463 4.382291 GCATATCGTGGTTACCATGGTAA 58.618 43.478 29.65 29.65 39.26 2.85
2191 4473 4.705337 TTACCATGGTAACCGCAAATTC 57.295 40.909 29.65 0.00 35.88 2.17
2192 4474 1.822371 ACCATGGTAACCGCAAATTCC 59.178 47.619 18.10 0.00 0.00 3.01
2193 4475 1.202245 CCATGGTAACCGCAAATTCCG 60.202 52.381 2.57 0.00 0.00 4.30
2199 4481 4.128388 CCGCAAATTCCGGTGCCC 62.128 66.667 9.00 0.00 40.84 5.36
2200 4482 4.128388 CGCAAATTCCGGTGCCCC 62.128 66.667 9.00 0.00 37.47 5.80
2201 4483 2.679996 GCAAATTCCGGTGCCCCT 60.680 61.111 0.00 0.00 34.58 4.79
2202 4484 2.710902 GCAAATTCCGGTGCCCCTC 61.711 63.158 0.00 0.00 34.58 4.30
2203 4485 2.045340 AAATTCCGGTGCCCCTCG 60.045 61.111 0.00 0.00 0.00 4.63
2204 4486 2.598787 AAATTCCGGTGCCCCTCGA 61.599 57.895 0.00 0.00 0.00 4.04
2205 4487 2.536997 AAATTCCGGTGCCCCTCGAG 62.537 60.000 5.13 5.13 0.00 4.04
2206 4488 3.976490 ATTCCGGTGCCCCTCGAGA 62.976 63.158 15.71 0.00 0.00 4.04
2207 4489 4.689549 TCCGGTGCCCCTCGAGAA 62.690 66.667 15.71 0.00 0.00 2.87
2208 4490 3.702048 CCGGTGCCCCTCGAGAAA 61.702 66.667 15.71 0.00 0.00 2.52
2209 4491 2.345991 CGGTGCCCCTCGAGAAAA 59.654 61.111 15.71 0.00 0.00 2.29
2210 4492 1.302192 CGGTGCCCCTCGAGAAAAA 60.302 57.895 15.71 0.00 0.00 1.94
2211 4493 0.676782 CGGTGCCCCTCGAGAAAAAT 60.677 55.000 15.71 0.00 0.00 1.82
2212 4494 1.545841 GGTGCCCCTCGAGAAAAATT 58.454 50.000 15.71 0.00 0.00 1.82
2213 4495 1.202348 GGTGCCCCTCGAGAAAAATTG 59.798 52.381 15.71 0.00 0.00 2.32
2214 4496 1.886542 GTGCCCCTCGAGAAAAATTGT 59.113 47.619 15.71 0.00 0.00 2.71
2215 4497 2.095212 GTGCCCCTCGAGAAAAATTGTC 60.095 50.000 15.71 0.00 0.00 3.18
2216 4498 1.472878 GCCCCTCGAGAAAAATTGTCC 59.527 52.381 15.71 0.00 0.00 4.02
2217 4499 2.790433 CCCCTCGAGAAAAATTGTCCA 58.210 47.619 15.71 0.00 0.00 4.02
2218 4500 2.488153 CCCCTCGAGAAAAATTGTCCAC 59.512 50.000 15.71 0.00 0.00 4.02
2219 4501 3.412386 CCCTCGAGAAAAATTGTCCACT 58.588 45.455 15.71 0.00 0.00 4.00
2220 4502 3.437049 CCCTCGAGAAAAATTGTCCACTC 59.563 47.826 15.71 0.00 0.00 3.51
2221 4503 3.123621 CCTCGAGAAAAATTGTCCACTCG 59.876 47.826 15.71 0.00 45.20 4.18
2222 4504 3.064207 TCGAGAAAAATTGTCCACTCGG 58.936 45.455 0.00 0.00 44.38 4.63
2223 4505 2.159627 CGAGAAAAATTGTCCACTCGGG 59.840 50.000 0.00 0.00 41.86 5.14
2224 4506 3.408634 GAGAAAAATTGTCCACTCGGGA 58.591 45.455 0.00 0.00 45.89 5.14
2232 4514 3.948735 TCCACTCGGGATCCAAAAC 57.051 52.632 15.23 0.00 42.15 2.43
2233 4515 1.358152 TCCACTCGGGATCCAAAACT 58.642 50.000 15.23 0.00 42.15 2.66
2234 4516 1.702957 TCCACTCGGGATCCAAAACTT 59.297 47.619 15.23 0.00 42.15 2.66
2235 4517 2.107552 TCCACTCGGGATCCAAAACTTT 59.892 45.455 15.23 0.00 42.15 2.66
2236 4518 2.228822 CCACTCGGGATCCAAAACTTTG 59.771 50.000 15.23 0.71 40.01 2.77
2237 4519 3.146066 CACTCGGGATCCAAAACTTTGA 58.854 45.455 15.23 0.00 40.55 2.69
2238 4520 3.758554 CACTCGGGATCCAAAACTTTGAT 59.241 43.478 15.23 0.00 40.55 2.57
2239 4521 4.010349 ACTCGGGATCCAAAACTTTGATC 58.990 43.478 15.23 5.31 40.55 2.92
2300 4582 1.197721 GCCATCGAGTGTCAAAGGTTG 59.802 52.381 0.00 0.00 0.00 3.77
2313 4595 2.684881 CAAAGGTTGACAGCAAGACACT 59.315 45.455 0.00 0.00 34.01 3.55
2327 4609 3.687102 CACTACCACACCGGGCGA 61.687 66.667 6.32 0.00 40.22 5.54
2365 4651 7.603180 AGTTCATCCACATAATCTGCTACTA 57.397 36.000 0.00 0.00 0.00 1.82
2413 4699 0.591170 CCTGTGCGACCGTTTTCAAT 59.409 50.000 0.00 0.00 0.00 2.57
2442 4728 1.221840 CGACAGCCATAAGCCCTGT 59.778 57.895 0.00 0.00 45.47 4.00
2449 4735 0.744414 CCATAAGCCCTGTGTGTCCG 60.744 60.000 0.00 0.00 0.00 4.79
2459 4745 1.194547 CTGTGTGTCCGCATGTTGTAC 59.805 52.381 0.00 0.00 0.00 2.90
2473 4759 5.528690 GCATGTTGTACTGATGACCATGTAT 59.471 40.000 0.00 0.00 0.00 2.29
2481 4767 7.712205 TGTACTGATGACCATGTATGAATTGAG 59.288 37.037 0.00 0.00 0.00 3.02
2485 4771 3.053768 TGACCATGTATGAATTGAGGCCA 60.054 43.478 5.01 0.00 0.00 5.36
2507 4793 3.383620 AGCTCCGAAGATAATCTGCAG 57.616 47.619 7.63 7.63 0.00 4.41
2574 4860 7.170489 TGACAATTTCAAATTGCGCAAAGAATA 59.830 29.630 28.81 18.94 32.55 1.75
2585 4871 3.609175 GCGCAAAGAATAGCACAAACTCA 60.609 43.478 0.30 0.00 0.00 3.41
2586 4872 3.908382 CGCAAAGAATAGCACAAACTCAC 59.092 43.478 0.00 0.00 0.00 3.51
2592 4878 1.497991 TAGCACAAACTCACACTCGC 58.502 50.000 0.00 0.00 0.00 5.03
2595 4881 1.483316 CACAAACTCACACTCGCGTA 58.517 50.000 5.77 0.00 0.00 4.42
2647 4934 3.820467 ACATCAAATCAAAGAGGCGAACA 59.180 39.130 0.00 0.00 0.00 3.18
2664 4951 6.601613 AGGCGAACAAACATGATAGGAATAAA 59.398 34.615 0.00 0.00 0.00 1.40
2688 4975 7.020827 AGATGAATAGTTTCCTCTTGGTCAA 57.979 36.000 0.00 0.00 34.37 3.18
2689 4976 7.108847 AGATGAATAGTTTCCTCTTGGTCAAG 58.891 38.462 4.44 4.44 34.37 3.02
2690 4977 6.187727 TGAATAGTTTCCTCTTGGTCAAGT 57.812 37.500 10.10 0.00 39.38 3.16
2691 4978 6.231211 TGAATAGTTTCCTCTTGGTCAAGTC 58.769 40.000 10.10 0.00 39.38 3.01
2692 4979 6.043243 TGAATAGTTTCCTCTTGGTCAAGTCT 59.957 38.462 10.10 4.51 39.38 3.24
2693 4980 4.078639 AGTTTCCTCTTGGTCAAGTCTG 57.921 45.455 10.10 3.39 39.38 3.51
2694 4981 3.456277 AGTTTCCTCTTGGTCAAGTCTGT 59.544 43.478 10.10 0.00 39.38 3.41
2697 4984 5.825593 TTCCTCTTGGTCAAGTCTGTAAT 57.174 39.130 10.10 0.00 39.38 1.89
2698 4985 5.825593 TCCTCTTGGTCAAGTCTGTAATT 57.174 39.130 10.10 0.00 39.38 1.40
2699 4986 5.794894 TCCTCTTGGTCAAGTCTGTAATTC 58.205 41.667 10.10 0.00 39.38 2.17
2700 4987 4.938226 CCTCTTGGTCAAGTCTGTAATTCC 59.062 45.833 10.10 0.00 39.38 3.01
2701 4988 4.566004 TCTTGGTCAAGTCTGTAATTCCG 58.434 43.478 10.10 0.00 39.38 4.30
2702 4989 2.695359 TGGTCAAGTCTGTAATTCCGC 58.305 47.619 0.00 0.00 0.00 5.54
2704 4991 3.244422 TGGTCAAGTCTGTAATTCCGCTT 60.244 43.478 0.00 0.00 0.00 4.68
2710 4997 6.701841 TCAAGTCTGTAATTCCGCTTATGATC 59.298 38.462 0.00 0.00 0.00 2.92
2711 4998 6.412362 AGTCTGTAATTCCGCTTATGATCT 57.588 37.500 0.00 0.00 0.00 2.75
2713 5000 7.275920 AGTCTGTAATTCCGCTTATGATCTTT 58.724 34.615 0.00 0.00 0.00 2.52
2714 5001 8.421784 AGTCTGTAATTCCGCTTATGATCTTTA 58.578 33.333 0.00 0.00 0.00 1.85
2715 5002 8.704234 GTCTGTAATTCCGCTTATGATCTTTAG 58.296 37.037 0.00 0.00 0.00 1.85
2716 5003 7.872993 TCTGTAATTCCGCTTATGATCTTTAGG 59.127 37.037 0.00 0.00 0.00 2.69
2736 5622 9.546428 CTTTAGGTGATTTTGAGGTTTTCAATT 57.454 29.630 0.00 0.00 44.90 2.32
2740 5626 5.405269 GTGATTTTGAGGTTTTCAATTCCCG 59.595 40.000 0.00 0.00 44.90 5.14
2760 5646 3.134804 CCGATCCACCTTGATCTTTAGGT 59.865 47.826 8.40 8.40 45.54 3.08
2766 5652 3.926616 ACCTTGATCTTTAGGTGACACG 58.073 45.455 12.15 0.00 43.05 4.49
2768 5654 4.223032 ACCTTGATCTTTAGGTGACACGAT 59.777 41.667 12.15 0.00 43.05 3.73
2770 5656 6.098409 ACCTTGATCTTTAGGTGACACGATAT 59.902 38.462 12.15 0.00 43.05 1.63
2771 5657 7.287005 ACCTTGATCTTTAGGTGACACGATATA 59.713 37.037 12.15 0.00 43.05 0.86
2772 5658 8.307483 CCTTGATCTTTAGGTGACACGATATAT 58.693 37.037 0.00 0.00 0.00 0.86
2807 5693 4.245660 CAAGTCTGTAATTCCGCTTCTGA 58.754 43.478 0.00 0.00 0.00 3.27
2835 5721 3.620966 GCATTGCCAGAAGAACCTAGACT 60.621 47.826 0.00 0.00 0.00 3.24
2837 5723 2.889512 TGCCAGAAGAACCTAGACTGA 58.110 47.619 0.00 0.00 0.00 3.41
2843 5729 6.127310 GCCAGAAGAACCTAGACTGATAGAAA 60.127 42.308 0.00 0.00 0.00 2.52
2846 5732 8.141268 CAGAAGAACCTAGACTGATAGAAATCC 58.859 40.741 0.00 0.00 0.00 3.01
2875 5761 8.114102 CCTTTTTAACCCCTCTTTAGGTATCTT 58.886 37.037 0.00 0.00 41.89 2.40
3055 5950 9.817809 GAATGAGGACTCTAATGTATGTAAACA 57.182 33.333 0.56 0.00 0.00 2.83
3069 5964 2.983192 TGTAAACAGAAGGGATCCCACA 59.017 45.455 32.69 21.20 38.92 4.17
3202 6106 4.636206 ACAGGATCAAACTAATCGCCTTTC 59.364 41.667 0.00 0.00 0.00 2.62
3205 6109 6.708054 CAGGATCAAACTAATCGCCTTTCTAT 59.292 38.462 0.00 0.00 0.00 1.98
3233 6137 7.276218 GTCATGTTCCATAAAAATGACCATGTG 59.724 37.037 9.09 0.00 40.68 3.21
3259 6163 3.255888 CGCATACTAGAGGATAGGCACAA 59.744 47.826 0.00 0.00 0.00 3.33
3385 6293 1.455822 TGGGGTCACCTTCCTCAATT 58.544 50.000 0.00 0.00 41.11 2.32
3390 6298 3.265995 GGGTCACCTTCCTCAATTCCTTA 59.734 47.826 0.00 0.00 0.00 2.69
3393 6301 5.339200 GGTCACCTTCCTCAATTCCTTATGA 60.339 44.000 0.00 0.00 0.00 2.15
3435 6345 2.652348 TCACCATTGACCTAACCCCAAT 59.348 45.455 0.00 0.00 0.00 3.16
3442 6352 3.028850 TGACCTAACCCCAATACTCTCG 58.971 50.000 0.00 0.00 0.00 4.04
3444 6354 2.040178 CCTAACCCCAATACTCTCGCT 58.960 52.381 0.00 0.00 0.00 4.93
3623 6539 1.067295 ATGAAGGACAGCCACTTCCA 58.933 50.000 0.00 0.00 41.78 3.53
3632 6548 4.072131 GACAGCCACTTCCACAAGAATAA 58.928 43.478 0.00 0.00 32.82 1.40
3639 6555 5.088739 CACTTCCACAAGAATAATGCGAAC 58.911 41.667 0.00 0.00 32.82 3.95
3656 6572 3.074412 CGAACAGGCATAAAGTTGTCCT 58.926 45.455 0.00 0.00 0.00 3.85
3669 6585 2.194597 GTCCTGGTTGGGTGCACA 59.805 61.111 20.43 0.00 36.20 4.57
3686 6602 3.134458 GCACAAGAGTATGAGCCATACC 58.866 50.000 16.87 11.10 45.37 2.73
3710 6626 3.751175 GTCAATCGGACTGGAACATTTGA 59.249 43.478 0.00 0.00 43.46 2.69
3800 6721 8.399425 TGAAACTTTTTGCGAACAAACTAGATA 58.601 29.630 0.00 0.00 45.29 1.98
3830 6752 9.316730 TGTTACACTCGTATAAAAACTTTCACT 57.683 29.630 0.00 0.00 0.00 3.41
3831 6753 9.577003 GTTACACTCGTATAAAAACTTTCACTG 57.423 33.333 0.00 0.00 0.00 3.66
3848 6770 7.284034 ACTTTCACTGAGAAATGACTTTCATGT 59.716 33.333 0.81 0.00 44.75 3.21
3855 6777 7.195646 TGAGAAATGACTTTCATGTTGTTGTC 58.804 34.615 0.00 0.00 42.71 3.18
3889 6813 8.574196 AAAACAAATTTGTCGCTATATATGGC 57.426 30.769 23.47 10.86 41.31 4.40
3890 6814 6.875948 ACAAATTTGTCGCTATATATGGCA 57.124 33.333 18.13 5.66 36.50 4.92
3895 6819 7.776933 ATTTGTCGCTATATATGGCATACTG 57.223 36.000 19.64 4.53 33.44 2.74
3900 6824 6.980978 GTCGCTATATATGGCATACTGTTCAT 59.019 38.462 19.64 0.00 33.44 2.57
3909 6833 4.576053 TGGCATACTGTTCATGCTATTGTC 59.424 41.667 13.52 0.00 46.44 3.18
4004 6929 1.063912 CGACAGCTCAACTTTGTTGCA 59.936 47.619 5.65 0.00 33.67 4.08
4008 6933 3.928375 ACAGCTCAACTTTGTTGCAAAAG 59.072 39.130 0.00 4.86 41.91 2.27
4028 6953 7.463544 CAAAAGAGTTTTGGAACATTTTGACC 58.536 34.615 18.05 0.00 45.53 4.02
4327 8052 5.242795 ACTTGGTGAGCCTAAACAACTAT 57.757 39.130 0.00 0.00 35.27 2.12
4393 8118 0.324738 ATCTCTCCGGCCAAGTCTCA 60.325 55.000 2.24 0.00 0.00 3.27
4792 8686 3.448469 AAAAATCAAGCCGTGGGGA 57.552 47.368 0.00 0.00 34.06 4.81
4882 8776 1.741770 GACGCCGAACAGCCTCATT 60.742 57.895 0.00 0.00 0.00 2.57
5083 8977 1.675219 GGCGTTCCAGGTCCTAACA 59.325 57.895 5.56 0.00 0.00 2.41
5326 9308 1.201825 GTTCGACGCAGACAAGCAC 59.798 57.895 0.00 0.00 0.00 4.40
5494 9476 1.419374 CCGTCAACCTCTTCTTCACG 58.581 55.000 0.00 0.00 0.00 4.35
5774 9859 3.503363 GTGAAGATCATTTGTGGACAGCA 59.497 43.478 0.00 0.00 0.00 4.41
5975 12354 1.092348 GGCGTGGTCAGTATTTTCCC 58.908 55.000 0.00 0.00 0.00 3.97
6023 12513 3.671008 AACACAGTGCACTATTACGGA 57.329 42.857 21.20 0.00 0.00 4.69
6027 12517 4.451096 ACACAGTGCACTATTACGGAAAAG 59.549 41.667 21.20 4.89 0.00 2.27
6068 12646 8.661352 AAATATTGGTGTTTTCCTCTTTTGTG 57.339 30.769 0.00 0.00 0.00 3.33
6187 12765 9.991388 ATTCAAACATTTCAGTTTCACAAAATG 57.009 25.926 10.72 10.72 39.55 2.32
6232 12810 6.902341 CATACAAGGATGTAATGTGTATGCC 58.098 40.000 8.65 0.00 44.81 4.40
6530 13111 1.667724 GCATCCATGAAACTCGGTCTG 59.332 52.381 0.00 0.00 0.00 3.51
6558 13140 2.159734 GCATTTTCGAGTCTCAGTGCAG 60.160 50.000 0.00 0.00 0.00 4.41
6734 13325 5.941948 AGAATTGTACAAGTACACAAGGC 57.058 39.130 14.65 0.00 44.81 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.035056 GCATGCAGGTGAACTAGGGT 60.035 55.000 14.21 0.00 0.00 4.34
188 191 3.087031 CTCGGGTGGAAGAACAGTACTA 58.913 50.000 0.00 0.00 0.00 1.82
407 1996 3.235481 TGCCGTCCCGTCCTTCAA 61.235 61.111 0.00 0.00 0.00 2.69
435 2029 0.106769 TGGCTTTGGTTGCACTGAGA 60.107 50.000 0.00 0.00 0.00 3.27
436 2030 0.746063 TTGGCTTTGGTTGCACTGAG 59.254 50.000 0.00 0.00 0.00 3.35
437 2031 0.459489 GTTGGCTTTGGTTGCACTGA 59.541 50.000 0.00 0.00 0.00 3.41
438 2032 0.461135 AGTTGGCTTTGGTTGCACTG 59.539 50.000 0.00 0.00 0.00 3.66
439 2033 1.194218 AAGTTGGCTTTGGTTGCACT 58.806 45.000 0.00 0.00 0.00 4.40
445 2039 1.407618 GTTCGGAAAGTTGGCTTTGGT 59.592 47.619 0.00 0.00 44.25 3.67
458 2052 2.049248 GGTACGCACGGTTCGGAA 60.049 61.111 5.03 0.00 0.00 4.30
461 2055 2.449525 CCATGGTACGCACGGTTCG 61.450 63.158 2.57 0.00 0.00 3.95
573 2171 0.838987 TAAGAACCGGGGTTGGCTCT 60.839 55.000 8.02 0.00 38.60 4.09
650 2253 1.202604 GCCAATGCCAATGCTAATGCT 60.203 47.619 0.00 0.00 40.48 3.79
651 2254 1.223187 GCCAATGCCAATGCTAATGC 58.777 50.000 0.00 0.00 38.71 3.56
652 2255 1.067364 TCGCCAATGCCAATGCTAATG 59.933 47.619 0.00 0.00 38.71 1.90
653 2256 1.401761 TCGCCAATGCCAATGCTAAT 58.598 45.000 0.00 0.00 38.71 1.73
654 2257 1.180907 TTCGCCAATGCCAATGCTAA 58.819 45.000 0.00 0.00 38.71 3.09
655 2258 1.180907 TTTCGCCAATGCCAATGCTA 58.819 45.000 0.00 0.00 38.71 3.49
776 2392 2.609491 GCCACCTTTTCGGAACAAATCC 60.609 50.000 0.00 0.00 45.57 3.01
899 2533 1.622607 TACCACATGGCCGGGAGAAG 61.623 60.000 2.18 0.00 39.32 2.85
900 2534 1.613928 TACCACATGGCCGGGAGAA 60.614 57.895 2.18 0.00 39.32 2.87
903 2537 2.039787 TCTACCACATGGCCGGGA 59.960 61.111 2.18 0.00 39.32 5.14
905 2539 1.443407 CTCTCTACCACATGGCCGG 59.557 63.158 0.00 0.00 39.32 6.13
908 2542 1.118838 AGAGCTCTCTACCACATGGC 58.881 55.000 11.45 0.00 38.35 4.40
937 2582 2.278661 TGCGCACGTACGTTGTGA 60.279 55.556 20.23 8.37 39.73 3.58
975 2620 0.605589 CCCCCGGAACAGTTCAAGAC 60.606 60.000 15.36 0.00 0.00 3.01
1224 2953 1.589803 AGTACAACCGAACCACAAGC 58.410 50.000 0.00 0.00 0.00 4.01
1494 3407 2.100252 CTCCGAGTAAAATCCGGTAGCA 59.900 50.000 0.00 0.00 43.40 3.49
1502 3415 2.981859 TCCAGCCTCCGAGTAAAATC 57.018 50.000 0.00 0.00 0.00 2.17
1529 3442 2.822399 GAGGTGGCCTCCGTATGG 59.178 66.667 18.02 0.00 44.36 2.74
1562 3480 2.840651 ACTGCCTGTATGCCTCTAAACT 59.159 45.455 0.00 0.00 0.00 2.66
1575 3831 4.885413 TGTGTACGTATTTTACTGCCTGT 58.115 39.130 0.00 0.00 0.00 4.00
1652 3920 5.304101 AGTTTGAATGTATTGGCACCAAAGA 59.696 36.000 6.14 0.00 39.55 2.52
1658 3926 5.772521 ACAAGAGTTTGAATGTATTGGCAC 58.227 37.500 0.00 0.00 37.73 5.01
1763 4045 6.962678 CGGTAAGTTCGGTAACCAAAATAATG 59.037 38.462 0.00 0.00 36.15 1.90
1764 4046 6.878389 TCGGTAAGTTCGGTAACCAAAATAAT 59.122 34.615 0.00 0.00 36.15 1.28
1765 4047 6.226787 TCGGTAAGTTCGGTAACCAAAATAA 58.773 36.000 0.00 0.00 36.15 1.40
1766 4048 5.788450 TCGGTAAGTTCGGTAACCAAAATA 58.212 37.500 0.00 0.00 36.15 1.40
1772 4054 2.337583 GGTTCGGTAAGTTCGGTAACC 58.662 52.381 0.00 0.00 36.15 2.85
1775 4057 0.894835 GGGGTTCGGTAAGTTCGGTA 59.105 55.000 0.00 0.00 0.00 4.02
1779 4061 0.108472 CGAGGGGGTTCGGTAAGTTC 60.108 60.000 0.00 0.00 36.95 3.01
1782 4064 0.682209 TCTCGAGGGGGTTCGGTAAG 60.682 60.000 13.56 0.00 40.83 2.34
1783 4065 0.251742 TTCTCGAGGGGGTTCGGTAA 60.252 55.000 13.56 0.00 40.83 2.85
1784 4066 0.251742 TTTCTCGAGGGGGTTCGGTA 60.252 55.000 13.56 0.00 40.83 4.02
1787 4069 0.669625 GTGTTTCTCGAGGGGGTTCG 60.670 60.000 13.56 0.00 41.79 3.95
1788 4070 0.685660 AGTGTTTCTCGAGGGGGTTC 59.314 55.000 13.56 0.00 0.00 3.62
1789 4071 1.137697 AAGTGTTTCTCGAGGGGGTT 58.862 50.000 13.56 0.00 0.00 4.11
1790 4072 2.019807 TAAGTGTTTCTCGAGGGGGT 57.980 50.000 13.56 0.00 0.00 4.95
1792 4074 3.490419 CGGTATAAGTGTTTCTCGAGGGG 60.490 52.174 13.56 0.00 0.00 4.79
1793 4075 3.490419 CCGGTATAAGTGTTTCTCGAGGG 60.490 52.174 13.56 0.00 0.00 4.30
1794 4076 3.490419 CCCGGTATAAGTGTTTCTCGAGG 60.490 52.174 13.56 0.00 0.00 4.63
1797 4079 2.199236 GCCCGGTATAAGTGTTTCTCG 58.801 52.381 0.00 0.00 0.00 4.04
1798 4080 3.255969 TGCCCGGTATAAGTGTTTCTC 57.744 47.619 0.00 0.00 0.00 2.87
1799 4081 3.706600 TTGCCCGGTATAAGTGTTTCT 57.293 42.857 0.00 0.00 0.00 2.52
1800 4082 4.976224 AATTGCCCGGTATAAGTGTTTC 57.024 40.909 0.00 0.00 0.00 2.78
1801 4083 5.731957 AAAATTGCCCGGTATAAGTGTTT 57.268 34.783 0.00 0.00 0.00 2.83
1802 4084 5.731957 AAAAATTGCCCGGTATAAGTGTT 57.268 34.783 0.00 0.00 0.00 3.32
1841 4123 9.337396 ACATTTAACTACACTCTGATTGTTTGA 57.663 29.630 5.96 0.00 0.00 2.69
1845 4127 8.883731 GCATACATTTAACTACACTCTGATTGT 58.116 33.333 5.93 5.93 0.00 2.71
1846 4128 8.338259 GGCATACATTTAACTACACTCTGATTG 58.662 37.037 0.00 0.00 0.00 2.67
1847 4129 8.046708 TGGCATACATTTAACTACACTCTGATT 58.953 33.333 0.00 0.00 0.00 2.57
1848 4130 7.564793 TGGCATACATTTAACTACACTCTGAT 58.435 34.615 0.00 0.00 0.00 2.90
1849 4131 6.941857 TGGCATACATTTAACTACACTCTGA 58.058 36.000 0.00 0.00 0.00 3.27
1850 4132 7.712639 AGATGGCATACATTTAACTACACTCTG 59.287 37.037 0.00 0.00 40.72 3.35
1851 4133 7.796054 AGATGGCATACATTTAACTACACTCT 58.204 34.615 0.00 0.00 40.72 3.24
1852 4134 7.928706 AGAGATGGCATACATTTAACTACACTC 59.071 37.037 0.00 0.00 40.72 3.51
1853 4135 7.796054 AGAGATGGCATACATTTAACTACACT 58.204 34.615 0.00 0.00 40.72 3.55
1854 4136 8.979574 GTAGAGATGGCATACATTTAACTACAC 58.020 37.037 0.00 0.00 40.72 2.90
1855 4137 8.148351 GGTAGAGATGGCATACATTTAACTACA 58.852 37.037 0.00 0.00 40.72 2.74
1856 4138 8.148351 TGGTAGAGATGGCATACATTTAACTAC 58.852 37.037 0.00 5.82 40.72 2.73
1858 4140 6.992715 GTGGTAGAGATGGCATACATTTAACT 59.007 38.462 0.00 0.00 40.72 2.24
1859 4141 6.204882 GGTGGTAGAGATGGCATACATTTAAC 59.795 42.308 0.00 0.00 40.72 2.01
1860 4142 6.126623 TGGTGGTAGAGATGGCATACATTTAA 60.127 38.462 0.00 0.00 40.72 1.52
1861 4143 5.368230 TGGTGGTAGAGATGGCATACATTTA 59.632 40.000 0.00 0.00 40.72 1.40
1864 4146 3.317406 TGGTGGTAGAGATGGCATACAT 58.683 45.455 0.00 0.00 44.18 2.29
1866 4148 5.246203 TCTTATGGTGGTAGAGATGGCATAC 59.754 44.000 0.00 0.00 0.00 2.39
1867 4149 5.402630 TCTTATGGTGGTAGAGATGGCATA 58.597 41.667 0.00 0.00 0.00 3.14
1868 4150 4.234550 TCTTATGGTGGTAGAGATGGCAT 58.765 43.478 0.00 0.00 0.00 4.40
1870 4152 4.899352 ATCTTATGGTGGTAGAGATGGC 57.101 45.455 0.00 0.00 0.00 4.40
1871 4153 7.382110 CACTTATCTTATGGTGGTAGAGATGG 58.618 42.308 0.00 0.00 0.00 3.51
1872 4154 7.382110 CCACTTATCTTATGGTGGTAGAGATG 58.618 42.308 0.00 0.00 42.80 2.90
1874 4156 6.978674 CCACTTATCTTATGGTGGTAGAGA 57.021 41.667 0.00 0.00 42.80 3.10
1880 4162 4.119862 CACGACCACTTATCTTATGGTGG 58.880 47.826 9.10 9.10 46.86 4.61
1881 4163 4.119862 CCACGACCACTTATCTTATGGTG 58.880 47.826 0.00 0.00 46.86 4.17
1883 4165 3.131396 GCCACGACCACTTATCTTATGG 58.869 50.000 0.00 0.00 39.57 2.74
1884 4166 3.792401 TGCCACGACCACTTATCTTATG 58.208 45.455 0.00 0.00 0.00 1.90
1885 4167 4.481368 TTGCCACGACCACTTATCTTAT 57.519 40.909 0.00 0.00 0.00 1.73
1886 4168 3.965379 TTGCCACGACCACTTATCTTA 57.035 42.857 0.00 0.00 0.00 2.10
1887 4169 2.851263 TTGCCACGACCACTTATCTT 57.149 45.000 0.00 0.00 0.00 2.40
1889 4171 1.737793 CCTTTGCCACGACCACTTATC 59.262 52.381 0.00 0.00 0.00 1.75
1891 4173 0.887387 GCCTTTGCCACGACCACTTA 60.887 55.000 0.00 0.00 0.00 2.24
1892 4174 2.193536 GCCTTTGCCACGACCACTT 61.194 57.895 0.00 0.00 0.00 3.16
1893 4175 2.594592 GCCTTTGCCACGACCACT 60.595 61.111 0.00 0.00 0.00 4.00
1894 4176 2.904866 TGCCTTTGCCACGACCAC 60.905 61.111 0.00 0.00 36.33 4.16
1896 4178 3.670377 GGTGCCTTTGCCACGACC 61.670 66.667 0.00 0.00 36.33 4.79
1897 4179 3.670377 GGGTGCCTTTGCCACGAC 61.670 66.667 0.00 0.00 36.33 4.34
1899 4181 2.912025 AAGGGTGCCTTTGCCACG 60.912 61.111 0.00 0.00 41.69 4.94
1907 4189 1.986882 CTGTTGAGAAAAGGGTGCCT 58.013 50.000 0.00 0.00 33.87 4.75
1908 4190 0.315251 GCTGTTGAGAAAAGGGTGCC 59.685 55.000 0.00 0.00 0.00 5.01
1909 4191 0.040067 CGCTGTTGAGAAAAGGGTGC 60.040 55.000 0.00 0.00 0.00 5.01
1910 4192 0.040067 GCGCTGTTGAGAAAAGGGTG 60.040 55.000 0.00 0.00 0.00 4.61
1911 4193 1.507141 CGCGCTGTTGAGAAAAGGGT 61.507 55.000 5.56 0.00 0.00 4.34
1912 4194 1.207593 CGCGCTGTTGAGAAAAGGG 59.792 57.895 5.56 0.00 0.00 3.95
1928 4210 1.782028 AAGACTTGAACCCGCAACGC 61.782 55.000 0.00 0.00 0.00 4.84
1929 4211 0.041312 CAAGACTTGAACCCGCAACG 60.041 55.000 9.76 0.00 0.00 4.10
1930 4212 1.002792 GACAAGACTTGAACCCGCAAC 60.003 52.381 21.95 0.00 0.00 4.17
1933 4215 1.149148 GAGACAAGACTTGAACCCGC 58.851 55.000 21.95 6.04 0.00 6.13
1934 4216 2.135933 GTGAGACAAGACTTGAACCCG 58.864 52.381 21.95 0.00 0.00 5.28
1935 4217 2.135933 CGTGAGACAAGACTTGAACCC 58.864 52.381 21.95 6.91 0.00 4.11
1936 4218 1.527311 GCGTGAGACAAGACTTGAACC 59.473 52.381 21.95 9.93 0.00 3.62
1937 4219 2.201732 TGCGTGAGACAAGACTTGAAC 58.798 47.619 21.95 14.05 0.00 3.18
1938 4220 2.595124 TGCGTGAGACAAGACTTGAA 57.405 45.000 21.95 1.79 0.00 2.69
1939 4221 2.820059 ATGCGTGAGACAAGACTTGA 57.180 45.000 21.95 0.00 0.00 3.02
1941 4223 6.560253 ATTAAAATGCGTGAGACAAGACTT 57.440 33.333 0.00 0.00 0.00 3.01
1942 4224 6.560253 AATTAAAATGCGTGAGACAAGACT 57.440 33.333 0.00 0.00 0.00 3.24
1943 4225 7.078228 AGAAATTAAAATGCGTGAGACAAGAC 58.922 34.615 0.00 0.00 0.00 3.01
1944 4226 7.202016 AGAAATTAAAATGCGTGAGACAAGA 57.798 32.000 0.00 0.00 0.00 3.02
1945 4227 7.858052 AAGAAATTAAAATGCGTGAGACAAG 57.142 32.000 0.00 0.00 0.00 3.16
1946 4228 8.641499 AAAAGAAATTAAAATGCGTGAGACAA 57.359 26.923 0.00 0.00 0.00 3.18
1947 4229 8.641499 AAAAAGAAATTAAAATGCGTGAGACA 57.359 26.923 0.00 0.00 0.00 3.41
1988 4270 0.966179 GTTCGACCCCTGGCATTTTT 59.034 50.000 0.00 0.00 0.00 1.94
1989 4271 0.112412 AGTTCGACCCCTGGCATTTT 59.888 50.000 0.00 0.00 0.00 1.82
1990 4272 0.322546 GAGTTCGACCCCTGGCATTT 60.323 55.000 0.00 0.00 0.00 2.32
1992 4274 2.990479 GAGTTCGACCCCTGGCAT 59.010 61.111 0.00 0.00 0.00 4.40
1993 4275 3.691342 CGAGTTCGACCCCTGGCA 61.691 66.667 0.00 0.00 43.02 4.92
1996 4278 3.744719 TCGCGAGTTCGACCCCTG 61.745 66.667 3.71 0.00 43.02 4.45
2002 4284 1.973138 CTAAAAGGTCGCGAGTTCGA 58.027 50.000 10.24 0.00 43.02 3.71
2003 4285 0.365859 GCTAAAAGGTCGCGAGTTCG 59.634 55.000 10.24 0.00 43.27 3.95
2004 4286 1.425412 TGCTAAAAGGTCGCGAGTTC 58.575 50.000 10.24 1.89 0.00 3.01
2007 4289 1.126846 CACTTGCTAAAAGGTCGCGAG 59.873 52.381 10.24 0.00 40.26 5.03
2008 4290 1.144969 CACTTGCTAAAAGGTCGCGA 58.855 50.000 3.71 3.71 0.00 5.87
2009 4291 0.165944 CCACTTGCTAAAAGGTCGCG 59.834 55.000 0.00 0.00 0.00 5.87
2010 4292 0.109735 GCCACTTGCTAAAAGGTCGC 60.110 55.000 0.00 0.00 36.87 5.19
2011 4293 1.197721 CTGCCACTTGCTAAAAGGTCG 59.802 52.381 0.00 0.00 42.00 4.79
2012 4294 2.230660 ACTGCCACTTGCTAAAAGGTC 58.769 47.619 0.00 0.00 42.00 3.85
2013 4295 2.364972 ACTGCCACTTGCTAAAAGGT 57.635 45.000 0.00 0.00 42.00 3.50
2016 4298 1.606668 CCGAACTGCCACTTGCTAAAA 59.393 47.619 0.00 0.00 42.00 1.52
2017 4299 1.234821 CCGAACTGCCACTTGCTAAA 58.765 50.000 0.00 0.00 42.00 1.85
2018 4300 0.605319 CCCGAACTGCCACTTGCTAA 60.605 55.000 0.00 0.00 42.00 3.09
2019 4301 1.003839 CCCGAACTGCCACTTGCTA 60.004 57.895 0.00 0.00 42.00 3.49
2020 4302 2.281761 CCCGAACTGCCACTTGCT 60.282 61.111 0.00 0.00 42.00 3.91
2021 4303 2.193536 AACCCGAACTGCCACTTGC 61.194 57.895 0.00 0.00 41.77 4.01
2022 4304 0.817634 TCAACCCGAACTGCCACTTG 60.818 55.000 0.00 0.00 0.00 3.16
2023 4305 0.106918 TTCAACCCGAACTGCCACTT 60.107 50.000 0.00 0.00 0.00 3.16
2025 4307 4.150994 TTCAACCCGAACTGCCAC 57.849 55.556 0.00 0.00 0.00 5.01
2032 4314 0.759959 TACTGGCTGTTCAACCCGAA 59.240 50.000 1.31 0.00 0.00 4.30
2033 4315 0.034337 GTACTGGCTGTTCAACCCGA 59.966 55.000 1.31 0.00 0.00 5.14
2037 4319 4.106029 TCTATCGTACTGGCTGTTCAAC 57.894 45.455 1.31 0.00 0.00 3.18
2038 4320 3.428999 GCTCTATCGTACTGGCTGTTCAA 60.429 47.826 1.31 0.00 0.00 2.69
2039 4321 2.099263 GCTCTATCGTACTGGCTGTTCA 59.901 50.000 1.31 0.00 0.00 3.18
2041 4323 2.379972 AGCTCTATCGTACTGGCTGTT 58.620 47.619 1.31 0.00 0.00 3.16
2042 4324 2.060050 AGCTCTATCGTACTGGCTGT 57.940 50.000 1.74 1.74 0.00 4.40
2044 4326 2.106857 ACCTAGCTCTATCGTACTGGCT 59.893 50.000 0.00 0.00 0.00 4.75
2045 4327 2.506444 ACCTAGCTCTATCGTACTGGC 58.494 52.381 0.00 0.00 0.00 4.85
2046 4328 4.639334 TGTACCTAGCTCTATCGTACTGG 58.361 47.826 0.00 0.00 32.39 4.00
2047 4329 5.932883 TCATGTACCTAGCTCTATCGTACTG 59.067 44.000 0.00 0.00 32.39 2.74
2049 4331 6.594547 TCATCATGTACCTAGCTCTATCGTAC 59.405 42.308 0.00 0.00 0.00 3.67
2051 4333 5.561679 TCATCATGTACCTAGCTCTATCGT 58.438 41.667 0.00 0.00 0.00 3.73
2052 4334 6.502136 TTCATCATGTACCTAGCTCTATCG 57.498 41.667 0.00 0.00 0.00 2.92
2053 4335 9.149225 CAATTTCATCATGTACCTAGCTCTATC 57.851 37.037 0.00 0.00 0.00 2.08
2054 4336 8.099537 CCAATTTCATCATGTACCTAGCTCTAT 58.900 37.037 0.00 0.00 0.00 1.98
2055 4337 7.290014 TCCAATTTCATCATGTACCTAGCTCTA 59.710 37.037 0.00 0.00 0.00 2.43
2056 4338 6.100279 TCCAATTTCATCATGTACCTAGCTCT 59.900 38.462 0.00 0.00 0.00 4.09
2057 4339 6.291377 TCCAATTTCATCATGTACCTAGCTC 58.709 40.000 0.00 0.00 0.00 4.09
2059 4341 5.471456 CCTCCAATTTCATCATGTACCTAGC 59.529 44.000 0.00 0.00 0.00 3.42
2063 4345 7.416326 GGTTTACCTCCAATTTCATCATGTACC 60.416 40.741 0.00 0.00 0.00 3.34
2064 4346 7.416326 GGGTTTACCTCCAATTTCATCATGTAC 60.416 40.741 0.00 0.00 35.85 2.90
2065 4347 6.605594 GGGTTTACCTCCAATTTCATCATGTA 59.394 38.462 0.00 0.00 35.85 2.29
2067 4349 5.163416 GGGGTTTACCTCCAATTTCATCATG 60.163 44.000 0.00 0.00 40.03 3.07
2069 4351 4.045334 AGGGGTTTACCTCCAATTTCATCA 59.955 41.667 0.00 0.00 37.13 3.07
2070 4352 4.610333 AGGGGTTTACCTCCAATTTCATC 58.390 43.478 0.00 0.00 37.13 2.92
2071 4353 4.692523 AGGGGTTTACCTCCAATTTCAT 57.307 40.909 0.00 0.00 37.13 2.57
2073 4355 6.014771 AGATAGGGGTTTACCTCCAATTTC 57.985 41.667 0.00 0.00 42.09 2.17
2074 4356 6.449041 TGTAGATAGGGGTTTACCTCCAATTT 59.551 38.462 0.00 0.00 42.09 1.82
2077 4359 4.962839 TGTAGATAGGGGTTTACCTCCAA 58.037 43.478 0.00 0.00 42.09 3.53
2078 4360 4.630382 TGTAGATAGGGGTTTACCTCCA 57.370 45.455 0.00 0.00 42.09 3.86
2079 4361 4.220163 CGATGTAGATAGGGGTTTACCTCC 59.780 50.000 0.00 0.00 42.09 4.30
2080 4362 5.048154 GTCGATGTAGATAGGGGTTTACCTC 60.048 48.000 0.00 0.00 42.09 3.85
2081 4363 4.831710 GTCGATGTAGATAGGGGTTTACCT 59.168 45.833 0.00 0.00 44.75 3.08
2082 4364 4.831710 AGTCGATGTAGATAGGGGTTTACC 59.168 45.833 0.00 0.00 39.11 2.85
2083 4365 6.040166 TGAAGTCGATGTAGATAGGGGTTTAC 59.960 42.308 0.00 0.00 0.00 2.01
2085 4367 4.960469 TGAAGTCGATGTAGATAGGGGTTT 59.040 41.667 0.00 0.00 0.00 3.27
2086 4368 4.543689 TGAAGTCGATGTAGATAGGGGTT 58.456 43.478 0.00 0.00 0.00 4.11
2087 4369 4.180377 TGAAGTCGATGTAGATAGGGGT 57.820 45.455 0.00 0.00 0.00 4.95
2088 4370 5.531122 TTTGAAGTCGATGTAGATAGGGG 57.469 43.478 0.00 0.00 0.00 4.79
2139 4421 3.044286 GCCGGAAAAATTTCGAACGAAA 58.956 40.909 21.28 21.28 46.37 3.46
2140 4422 2.033049 TGCCGGAAAAATTTCGAACGAA 59.967 40.909 5.05 5.53 38.06 3.85
2141 4423 1.602851 TGCCGGAAAAATTTCGAACGA 59.397 42.857 5.05 0.00 38.06 3.85
2142 4424 2.039327 TGCCGGAAAAATTTCGAACG 57.961 45.000 5.05 0.00 38.06 3.95
2143 4425 4.436523 CGATATGCCGGAAAAATTTCGAAC 59.563 41.667 5.05 0.00 38.06 3.95
2144 4426 4.095185 ACGATATGCCGGAAAAATTTCGAA 59.905 37.500 5.05 0.00 38.06 3.71
2145 4427 3.623960 ACGATATGCCGGAAAAATTTCGA 59.376 39.130 5.05 0.00 38.06 3.71
2146 4428 3.723764 CACGATATGCCGGAAAAATTTCG 59.276 43.478 5.05 11.34 38.06 3.46
2147 4429 4.041723 CCACGATATGCCGGAAAAATTTC 58.958 43.478 5.05 0.00 36.46 2.17
2148 4430 3.445805 ACCACGATATGCCGGAAAAATTT 59.554 39.130 5.05 0.00 0.00 1.82
2149 4431 3.020984 ACCACGATATGCCGGAAAAATT 58.979 40.909 5.05 0.00 0.00 1.82
2150 4432 2.650322 ACCACGATATGCCGGAAAAAT 58.350 42.857 5.05 0.00 0.00 1.82
2151 4433 2.116827 ACCACGATATGCCGGAAAAA 57.883 45.000 5.05 0.00 0.00 1.94
2152 4434 2.116827 AACCACGATATGCCGGAAAA 57.883 45.000 5.05 0.00 0.00 2.29
2153 4435 2.553086 GTAACCACGATATGCCGGAAA 58.447 47.619 5.05 0.00 0.00 3.13
2154 4436 1.202557 GGTAACCACGATATGCCGGAA 60.203 52.381 5.05 0.00 0.00 4.30
2155 4437 0.390124 GGTAACCACGATATGCCGGA 59.610 55.000 5.05 0.00 0.00 5.14
2156 4438 0.105224 TGGTAACCACGATATGCCGG 59.895 55.000 0.00 0.00 0.00 6.13
2157 4439 1.798223 CATGGTAACCACGATATGCCG 59.202 52.381 0.00 0.00 35.80 5.69
2158 4440 2.151202 CCATGGTAACCACGATATGCC 58.849 52.381 2.57 0.00 35.80 4.40
2159 4441 2.846193 ACCATGGTAACCACGATATGC 58.154 47.619 18.10 0.00 35.80 3.14
2170 4452 3.444388 GGAATTTGCGGTTACCATGGTAA 59.556 43.478 29.65 29.65 38.14 2.85
2171 4453 3.018149 GGAATTTGCGGTTACCATGGTA 58.982 45.455 21.05 21.05 0.00 3.25
2172 4454 1.822371 GGAATTTGCGGTTACCATGGT 59.178 47.619 23.55 23.55 0.00 3.55
2173 4455 1.202245 CGGAATTTGCGGTTACCATGG 60.202 52.381 11.19 11.19 0.00 3.66
2174 4456 1.202245 CCGGAATTTGCGGTTACCATG 60.202 52.381 19.91 0.00 46.74 3.66
2175 4457 1.099689 CCGGAATTTGCGGTTACCAT 58.900 50.000 19.91 0.00 46.74 3.55
2176 4458 2.557451 CCGGAATTTGCGGTTACCA 58.443 52.632 19.91 0.00 46.74 3.25
2194 4476 1.886542 ACAATTTTTCTCGAGGGGCAC 59.113 47.619 13.56 0.00 0.00 5.01
2195 4477 2.159382 GACAATTTTTCTCGAGGGGCA 58.841 47.619 13.56 0.00 0.00 5.36
2196 4478 1.472878 GGACAATTTTTCTCGAGGGGC 59.527 52.381 13.56 0.00 0.00 5.80
2197 4479 2.488153 GTGGACAATTTTTCTCGAGGGG 59.512 50.000 13.56 0.00 0.00 4.79
2198 4480 3.412386 AGTGGACAATTTTTCTCGAGGG 58.588 45.455 13.56 0.00 0.00 4.30
2199 4481 3.123621 CGAGTGGACAATTTTTCTCGAGG 59.876 47.826 13.56 0.00 44.58 4.63
2200 4482 3.123621 CCGAGTGGACAATTTTTCTCGAG 59.876 47.826 5.93 5.93 44.58 4.04
2201 4483 3.064207 CCGAGTGGACAATTTTTCTCGA 58.936 45.455 12.74 0.00 44.58 4.04
2202 4484 2.159627 CCCGAGTGGACAATTTTTCTCG 59.840 50.000 0.00 0.00 42.51 4.04
2203 4485 3.408634 TCCCGAGTGGACAATTTTTCTC 58.591 45.455 0.00 0.00 38.61 2.87
2204 4486 3.502123 TCCCGAGTGGACAATTTTTCT 57.498 42.857 0.00 0.00 38.61 2.52
2213 4495 6.102075 CAAAGTTTTGGATCCCGAGTGGAC 62.102 50.000 9.90 0.00 39.16 4.02
2214 4496 4.059644 CAAAGTTTTGGATCCCGAGTGGA 61.060 47.826 9.90 0.00 39.99 4.02
2215 4497 2.200373 AAGTTTTGGATCCCGAGTGG 57.800 50.000 9.90 0.00 0.00 4.00
2216 4498 3.146066 TCAAAGTTTTGGATCCCGAGTG 58.854 45.455 9.90 0.00 38.66 3.51
2217 4499 3.502123 TCAAAGTTTTGGATCCCGAGT 57.498 42.857 9.90 0.00 38.66 4.18
2218 4500 3.378427 GGATCAAAGTTTTGGATCCCGAG 59.622 47.826 18.18 0.00 38.05 4.63
2219 4501 3.245087 TGGATCAAAGTTTTGGATCCCGA 60.245 43.478 22.85 10.03 40.35 5.14
2220 4502 3.088532 TGGATCAAAGTTTTGGATCCCG 58.911 45.455 22.85 0.00 40.35 5.14
2221 4503 5.656416 TGTATGGATCAAAGTTTTGGATCCC 59.344 40.000 22.85 13.47 40.35 3.85
2222 4504 6.773976 TGTATGGATCAAAGTTTTGGATCC 57.226 37.500 20.59 20.59 40.84 3.36
2223 4505 7.035612 GGTTGTATGGATCAAAGTTTTGGATC 58.964 38.462 7.19 7.19 38.66 3.36
2224 4506 6.496565 TGGTTGTATGGATCAAAGTTTTGGAT 59.503 34.615 4.89 0.00 38.66 3.41
2225 4507 5.835819 TGGTTGTATGGATCAAAGTTTTGGA 59.164 36.000 4.89 0.00 38.66 3.53
2226 4508 6.095432 TGGTTGTATGGATCAAAGTTTTGG 57.905 37.500 4.89 0.00 38.66 3.28
2227 4509 8.606040 AAATGGTTGTATGGATCAAAGTTTTG 57.394 30.769 0.00 0.00 39.48 2.44
2228 4510 9.625747 AAAAATGGTTGTATGGATCAAAGTTTT 57.374 25.926 0.00 0.00 0.00 2.43
2260 4542 7.220683 CGATGGCTTGGAGTTATTTTATGTTTG 59.779 37.037 0.00 0.00 0.00 2.93
2281 4563 2.766313 TCAACCTTTGACACTCGATGG 58.234 47.619 0.00 0.00 34.08 3.51
2300 4582 2.135933 GTGTGGTAGTGTCTTGCTGTC 58.864 52.381 0.00 0.00 0.00 3.51
2313 4595 0.250814 ATTTTTCGCCCGGTGTGGTA 60.251 50.000 0.00 0.00 35.15 3.25
2365 4651 1.636148 ACCAGTTTGAATGGCATGCT 58.364 45.000 18.92 0.00 41.87 3.79
2395 4681 1.721489 CGATTGAAAACGGTCGCACAG 60.721 52.381 0.00 0.00 0.00 3.66
2428 4714 0.035056 GACACACAGGGCTTATGGCT 60.035 55.000 2.11 0.00 41.46 4.75
2442 4728 1.069358 TCAGTACAACATGCGGACACA 59.931 47.619 0.00 0.00 0.00 3.72
2449 4735 3.691118 ACATGGTCATCAGTACAACATGC 59.309 43.478 7.81 0.00 38.14 4.06
2459 4745 5.048921 GCCTCAATTCATACATGGTCATCAG 60.049 44.000 0.00 0.00 0.00 2.90
2473 4759 1.202687 CGGAGCTATGGCCTCAATTCA 60.203 52.381 3.32 0.00 39.73 2.57
2481 4767 3.196685 AGATTATCTTCGGAGCTATGGCC 59.803 47.826 0.00 0.00 39.73 5.36
2485 4771 4.769488 TCTGCAGATTATCTTCGGAGCTAT 59.231 41.667 13.74 0.00 0.00 2.97
2550 4836 5.731599 TTCTTTGCGCAATTTGAAATTGT 57.268 30.435 25.64 0.00 0.00 2.71
2556 4842 3.919804 GTGCTATTCTTTGCGCAATTTGA 59.080 39.130 25.64 18.77 39.25 2.69
2574 4860 1.490693 CGCGAGTGTGAGTTTGTGCT 61.491 55.000 0.00 0.00 0.00 4.40
2592 4878 4.091945 CGCCATAATCTGAATGGTCATACG 59.908 45.833 9.50 2.00 44.87 3.06
2595 4881 4.356405 TCGCCATAATCTGAATGGTCAT 57.644 40.909 9.50 0.00 44.87 3.06
2688 4975 6.412362 AGATCATAAGCGGAATTACAGACT 57.588 37.500 0.00 0.00 0.00 3.24
2689 4976 7.484035 AAAGATCATAAGCGGAATTACAGAC 57.516 36.000 0.00 0.00 0.00 3.51
2690 4977 7.872993 CCTAAAGATCATAAGCGGAATTACAGA 59.127 37.037 0.00 0.00 0.00 3.41
2691 4978 7.657761 ACCTAAAGATCATAAGCGGAATTACAG 59.342 37.037 0.00 0.00 0.00 2.74
2692 4979 7.441157 CACCTAAAGATCATAAGCGGAATTACA 59.559 37.037 0.00 0.00 0.00 2.41
2693 4980 7.656137 TCACCTAAAGATCATAAGCGGAATTAC 59.344 37.037 0.00 0.00 0.00 1.89
2694 4981 7.732025 TCACCTAAAGATCATAAGCGGAATTA 58.268 34.615 0.00 0.00 0.00 1.40
2697 4984 5.607939 TCACCTAAAGATCATAAGCGGAA 57.392 39.130 0.00 0.00 0.00 4.30
2698 4985 5.808366 ATCACCTAAAGATCATAAGCGGA 57.192 39.130 0.00 0.00 0.00 5.54
2699 4986 6.867662 AAATCACCTAAAGATCATAAGCGG 57.132 37.500 0.00 0.00 0.00 5.52
2700 4987 7.919690 TCAAAATCACCTAAAGATCATAAGCG 58.080 34.615 0.00 0.00 0.00 4.68
2701 4988 8.348507 CCTCAAAATCACCTAAAGATCATAAGC 58.651 37.037 0.00 0.00 0.00 3.09
2702 4989 9.401058 ACCTCAAAATCACCTAAAGATCATAAG 57.599 33.333 0.00 0.00 0.00 1.73
2704 4991 9.753674 AAACCTCAAAATCACCTAAAGATCATA 57.246 29.630 0.00 0.00 0.00 2.15
2736 5622 1.879575 AAGATCAAGGTGGATCGGGA 58.120 50.000 0.00 0.00 46.55 5.14
2774 5660 8.993121 CGGAATTACAGACTTGCTAAATGATAT 58.007 33.333 0.00 0.00 0.00 1.63
2775 5661 7.042051 GCGGAATTACAGACTTGCTAAATGATA 60.042 37.037 0.00 0.00 0.00 2.15
2776 5662 6.238484 GCGGAATTACAGACTTGCTAAATGAT 60.238 38.462 0.00 0.00 0.00 2.45
2777 5663 5.064707 GCGGAATTACAGACTTGCTAAATGA 59.935 40.000 0.00 0.00 0.00 2.57
2795 5681 0.249657 GCGAGGATCAGAAGCGGAAT 60.250 55.000 0.00 0.00 33.17 3.01
2796 5682 1.141881 GCGAGGATCAGAAGCGGAA 59.858 57.895 0.00 0.00 33.17 4.30
2807 5693 0.543277 TCTTCTGGCAATGCGAGGAT 59.457 50.000 16.88 0.00 35.16 3.24
2835 5721 6.379988 GGGTTAAAAAGGCTGGATTTCTATCA 59.620 38.462 0.00 0.00 32.09 2.15
2837 5723 5.661312 GGGGTTAAAAAGGCTGGATTTCTAT 59.339 40.000 0.00 0.00 0.00 1.98
2843 5729 2.654896 AGAGGGGTTAAAAAGGCTGGAT 59.345 45.455 0.00 0.00 0.00 3.41
2846 5732 4.462834 CCTAAAGAGGGGTTAAAAAGGCTG 59.537 45.833 0.00 0.00 39.48 4.85
2875 5761 7.340232 AGCCTATTCATGTTCATGCTCTTTTTA 59.660 33.333 7.80 0.00 0.00 1.52
2962 5857 4.241681 TGTTTCCAAAACAAGCTCAACAC 58.758 39.130 2.90 0.00 0.00 3.32
3055 5950 1.842562 CTGTGATGTGGGATCCCTTCT 59.157 52.381 31.05 15.20 36.94 2.85
3069 5964 4.212716 ACATGCATCTATTTGGCTGTGAT 58.787 39.130 0.00 0.00 0.00 3.06
3159 6057 4.004314 TGTGTCTTTTCGAACAACTTCCA 58.996 39.130 0.00 0.00 0.00 3.53
3233 6137 3.119424 GCCTATCCTCTAGTATGCGGTTC 60.119 52.174 0.00 0.00 0.00 3.62
3410 6319 4.480537 TGGGGTTAGGTCAATGGTGATATT 59.519 41.667 0.00 0.00 35.80 1.28
3435 6345 4.705507 ACTCCTATGTTCAAAGCGAGAGTA 59.294 41.667 0.00 0.00 30.65 2.59
3442 6352 3.944087 AGTGGACTCCTATGTTCAAAGC 58.056 45.455 0.00 0.00 0.00 3.51
3444 6354 5.304686 ACAAGTGGACTCCTATGTTCAAA 57.695 39.130 0.00 0.00 0.00 2.69
3520 6431 7.961325 AAAGGCATACAACAAAGTAAATTGG 57.039 32.000 0.00 0.00 34.56 3.16
3603 6515 1.425066 TGGAAGTGGCTGTCCTTCATT 59.575 47.619 10.98 0.00 39.04 2.57
3613 6525 3.445096 GCATTATTCTTGTGGAAGTGGCT 59.555 43.478 0.00 0.00 37.36 4.75
3623 6539 3.081061 TGCCTGTTCGCATTATTCTTGT 58.919 40.909 0.00 0.00 32.62 3.16
3639 6555 2.795329 ACCAGGACAACTTTATGCCTG 58.205 47.619 0.00 0.00 40.87 4.85
3656 6572 0.840617 TACTCTTGTGCACCCAACCA 59.159 50.000 15.69 0.00 0.00 3.67
3669 6585 4.290093 TGACTGGTATGGCTCATACTCTT 58.710 43.478 18.71 8.18 44.16 2.85
3704 6620 5.872617 TGTAATTACACCCGAGAGTCAAATG 59.127 40.000 14.35 0.00 0.00 2.32
3705 6621 6.045072 TGTAATTACACCCGAGAGTCAAAT 57.955 37.500 14.35 0.00 0.00 2.32
3808 6730 7.924412 TCTCAGTGAAAGTTTTTATACGAGTGT 59.076 33.333 0.00 0.00 0.00 3.55
3828 6750 6.949352 ACAACATGAAAGTCATTTCTCAGT 57.051 33.333 0.00 0.00 44.35 3.41
3830 6752 7.099266 ACAACAACATGAAAGTCATTTCTCA 57.901 32.000 0.00 0.00 44.35 3.27
3831 6753 6.358030 CGACAACAACATGAAAGTCATTTCTC 59.642 38.462 0.00 0.00 44.35 2.87
3878 6802 6.952743 GCATGAACAGTATGCCATATATAGC 58.047 40.000 0.00 0.00 43.88 2.97
3889 6813 6.982724 TCTCTGACAATAGCATGAACAGTATG 59.017 38.462 0.00 0.00 46.00 2.39
3890 6814 7.117285 TCTCTGACAATAGCATGAACAGTAT 57.883 36.000 0.00 0.00 33.61 2.12
3895 6819 8.333908 CAAGTATTCTCTGACAATAGCATGAAC 58.666 37.037 0.00 0.00 0.00 3.18
3900 6824 6.935167 TGACAAGTATTCTCTGACAATAGCA 58.065 36.000 0.00 0.00 0.00 3.49
3909 6833 8.777413 TCTGACAAAAATGACAAGTATTCTCTG 58.223 33.333 0.00 0.00 0.00 3.35
3956 6880 7.609960 TCTGGCATACAAAAATATTCTGCAAA 58.390 30.769 0.00 0.00 0.00 3.68
3975 6900 0.179059 TTGAGCTGTCGTTTCTGGCA 60.179 50.000 0.00 0.00 0.00 4.92
4004 6929 7.394016 AGGTCAAAATGTTCCAAAACTCTTTT 58.606 30.769 0.00 0.00 36.30 2.27
4008 6933 7.609760 AAAAGGTCAAAATGTTCCAAAACTC 57.390 32.000 0.00 0.00 36.30 3.01
4051 6976 7.882271 TGGTAATTACACCTGGTTACGTATTTT 59.118 33.333 17.16 0.00 39.50 1.82
4052 6977 7.334171 GTGGTAATTACACCTGGTTACGTATTT 59.666 37.037 17.16 2.82 39.50 1.40
4327 8052 1.588674 CCTGGTTGTCGTACTTGCAA 58.411 50.000 0.00 0.00 0.00 4.08
4635 8504 3.813596 CCTACGATGGCACCAAGC 58.186 61.111 0.00 0.00 44.65 4.01
5083 8977 1.293062 ACAGGATGGAGTTGATGCCT 58.707 50.000 0.00 0.00 43.62 4.75
5326 9308 4.671569 GAGCAGCCCCGCGATAGG 62.672 72.222 8.23 6.55 36.85 2.57
5494 9476 2.325857 GCCTGCGCGATGATGAAC 59.674 61.111 12.10 0.00 0.00 3.18
5723 9808 3.702330 TGTTGATATCGGTAAGAGCACG 58.298 45.455 0.00 0.00 0.00 5.34
5768 9853 3.249091 CCACGCATATCTATCTGCTGTC 58.751 50.000 0.00 0.00 36.23 3.51
5774 9859 2.893489 TGTGAGCCACGCATATCTATCT 59.107 45.455 1.66 0.00 37.14 1.98
5894 12267 1.412343 ACACCCACCAAAAATGAGCAC 59.588 47.619 0.00 0.00 0.00 4.40
5901 12280 1.388065 CGCTCCACACCCACCAAAAA 61.388 55.000 0.00 0.00 0.00 1.94
5975 12354 3.262420 AGTATGTTTCTTAGGCACGCTG 58.738 45.455 0.00 0.00 0.00 5.18
6068 12646 4.882671 AACATGGAGCACAATTATCGAC 57.117 40.909 0.00 0.00 0.00 4.20
6169 12747 7.846644 TTTCAGCATTTTGTGAAACTGAAAT 57.153 28.000 10.91 0.00 39.89 2.17
6494 13072 5.743636 TGGATGCCTTAATTTGAAAGCTT 57.256 34.783 0.00 0.00 0.00 3.74
6496 13074 5.663456 TCATGGATGCCTTAATTTGAAAGC 58.337 37.500 0.00 0.00 0.00 3.51
6497 13075 7.820872 AGTTTCATGGATGCCTTAATTTGAAAG 59.179 33.333 0.00 0.00 33.84 2.62
6500 13081 6.404623 CGAGTTTCATGGATGCCTTAATTTGA 60.405 38.462 0.00 0.00 0.00 2.69
6512 13093 1.278985 TGCAGACCGAGTTTCATGGAT 59.721 47.619 0.00 0.00 0.00 3.41
6530 13111 3.174375 GAGACTCGAAAATGCCAAATGC 58.826 45.455 0.00 0.00 41.77 3.56
6595 13177 5.330233 TCACCCGGATTGCTATATCTAAGA 58.670 41.667 0.73 0.00 0.00 2.10
6613 13195 0.243636 CCAAAATGCCGTTCTCACCC 59.756 55.000 0.00 0.00 0.00 4.61
6614 13196 1.200020 CTCCAAAATGCCGTTCTCACC 59.800 52.381 0.00 0.00 0.00 4.02
6706 13296 9.233232 CTTGTGTACTTGTACAATTCTTTTTCC 57.767 33.333 9.13 0.85 36.34 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.