Multiple sequence alignment - TraesCS5D01G233400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G233400 chr5D 100.000 6894 0 0 1 6894 341030699 341023806 0.000000e+00 12731.0
1 TraesCS5D01G233400 chr5B 93.985 5470 201 47 796 6206 400445914 400440514 0.000000e+00 8161.0
2 TraesCS5D01G233400 chr5B 82.989 435 31 24 6372 6780 400439981 400439564 3.060000e-93 353.0
3 TraesCS5D01G233400 chr5A 94.793 1882 63 13 2016 3887 442275503 442273647 0.000000e+00 2900.0
4 TraesCS5D01G233400 chr5A 94.521 1606 75 9 3882 5475 442273297 442271693 0.000000e+00 2466.0
5 TraesCS5D01G233400 chr5A 90.718 1142 65 14 796 1908 442276645 442275516 0.000000e+00 1483.0
6 TraesCS5D01G233400 chr5A 83.902 820 98 23 1 795 680203167 680203977 0.000000e+00 752.0
7 TraesCS5D01G233400 chr5A 91.991 462 34 3 5541 6001 442270687 442270228 0.000000e+00 645.0
8 TraesCS5D01G233400 chr5A 84.500 200 14 8 6341 6523 442269314 442269115 1.530000e-41 182.0
9 TraesCS5D01G233400 chr5A 80.435 184 13 8 6570 6733 442269109 442268929 1.210000e-22 119.0
10 TraesCS5D01G233400 chr6D 87.469 814 65 21 7 796 422220984 422220184 0.000000e+00 904.0
11 TraesCS5D01G233400 chr6D 97.015 67 2 0 6828 6894 376743009 376742943 5.650000e-21 113.0
12 TraesCS5D01G233400 chr6D 95.522 67 3 0 6828 6894 32743506 32743440 2.630000e-19 108.0
13 TraesCS5D01G233400 chr6D 95.522 67 3 0 6828 6894 50989634 50989568 2.630000e-19 108.0
14 TraesCS5D01G233400 chr6D 95.522 67 3 0 6828 6894 50997917 50997851 2.630000e-19 108.0
15 TraesCS5D01G233400 chr6D 95.522 67 3 0 6828 6894 71388326 71388260 2.630000e-19 108.0
16 TraesCS5D01G233400 chr4A 86.490 792 76 19 17 785 603959346 603960129 0.000000e+00 841.0
17 TraesCS5D01G233400 chr4A 84.178 809 88 25 16 796 89949850 89950646 0.000000e+00 749.0
18 TraesCS5D01G233400 chr2D 85.662 823 80 24 1 794 569681513 569682326 0.000000e+00 832.0
19 TraesCS5D01G233400 chr6A 86.015 808 74 26 16 795 592700584 592701380 0.000000e+00 830.0
20 TraesCS5D01G233400 chr6A 84.731 799 80 29 16 795 373135081 373135856 0.000000e+00 761.0
21 TraesCS5D01G233400 chr6A 97.015 67 2 0 6828 6894 179256564 179256498 5.650000e-21 113.0
22 TraesCS5D01G233400 chr3A 84.455 817 94 21 1 795 616709457 616710262 0.000000e+00 774.0
23 TraesCS5D01G233400 chr3A 84.166 821 94 23 1 795 688895616 688896426 0.000000e+00 763.0
24 TraesCS5D01G233400 chr6B 98.507 67 1 0 6828 6894 510741008 510741074 1.210000e-22 119.0
25 TraesCS5D01G233400 chr2A 84.677 124 14 3 2256 2378 306160648 306160767 1.210000e-22 119.0
26 TraesCS5D01G233400 chr4B 97.101 69 2 0 6826 6894 369319474 369319542 4.370000e-22 117.0
27 TraesCS5D01G233400 chr4B 97.015 67 2 0 6828 6894 390332534 390332600 5.650000e-21 113.0
28 TraesCS5D01G233400 chr4B 97.015 67 2 0 6828 6894 571428092 571428158 5.650000e-21 113.0
29 TraesCS5D01G233400 chr4B 96.970 66 2 0 6828 6893 363671471 363671406 2.030000e-20 111.0
30 TraesCS5D01G233400 chr7B 97.059 68 2 0 6827 6894 216340663 216340730 1.570000e-21 115.0
31 TraesCS5D01G233400 chr2B 97.059 68 2 0 6827 6894 369105719 369105786 1.570000e-21 115.0
32 TraesCS5D01G233400 chr2B 83.000 100 10 4 2256 2352 300256133 300256228 4.430000e-12 84.2
33 TraesCS5D01G233400 chr7D 97.015 67 2 0 6828 6894 108936586 108936652 5.650000e-21 113.0
34 TraesCS5D01G233400 chr7D 97.015 67 2 0 6828 6894 470312838 470312904 5.650000e-21 113.0
35 TraesCS5D01G233400 chr3D 97.015 67 2 0 6828 6894 322388243 322388309 5.650000e-21 113.0
36 TraesCS5D01G233400 chr1D 97.015 67 2 0 6828 6894 294528687 294528753 5.650000e-21 113.0
37 TraesCS5D01G233400 chr1D 95.588 68 3 0 6827 6894 212808667 212808734 7.310000e-20 110.0
38 TraesCS5D01G233400 chr4D 96.970 66 2 0 6829 6894 52022161 52022096 2.030000e-20 111.0
39 TraesCS5D01G233400 chrUn 95.522 67 3 0 6828 6894 59407927 59407861 2.630000e-19 108.0
40 TraesCS5D01G233400 chrUn 95.522 67 3 0 6828 6894 289176666 289176600 2.630000e-19 108.0
41 TraesCS5D01G233400 chrUn 95.522 67 3 0 6828 6894 289182583 289182517 2.630000e-19 108.0
42 TraesCS5D01G233400 chrUn 95.522 67 3 0 6828 6894 390682615 390682549 2.630000e-19 108.0
43 TraesCS5D01G233400 chrUn 94.030 67 4 0 6828 6894 31765755 31765689 1.220000e-17 102.0
44 TraesCS5D01G233400 chrUn 94.030 67 4 0 6828 6894 57604478 57604412 1.220000e-17 102.0
45 TraesCS5D01G233400 chrUn 94.030 67 4 0 6828 6894 67937504 67937570 1.220000e-17 102.0
46 TraesCS5D01G233400 chrUn 94.030 67 4 0 6828 6894 91605450 91605516 1.220000e-17 102.0
47 TraesCS5D01G233400 chrUn 94.030 67 4 0 6828 6894 279396008 279395942 1.220000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G233400 chr5D 341023806 341030699 6893 True 12731.000000 12731 100.000 1 6894 1 chr5D.!!$R1 6893
1 TraesCS5D01G233400 chr5B 400439564 400445914 6350 True 4257.000000 8161 88.487 796 6780 2 chr5B.!!$R1 5984
2 TraesCS5D01G233400 chr5A 442268929 442276645 7716 True 1299.166667 2900 89.493 796 6733 6 chr5A.!!$R1 5937
3 TraesCS5D01G233400 chr5A 680203167 680203977 810 False 752.000000 752 83.902 1 795 1 chr5A.!!$F1 794
4 TraesCS5D01G233400 chr6D 422220184 422220984 800 True 904.000000 904 87.469 7 796 1 chr6D.!!$R6 789
5 TraesCS5D01G233400 chr4A 603959346 603960129 783 False 841.000000 841 86.490 17 785 1 chr4A.!!$F2 768
6 TraesCS5D01G233400 chr4A 89949850 89950646 796 False 749.000000 749 84.178 16 796 1 chr4A.!!$F1 780
7 TraesCS5D01G233400 chr2D 569681513 569682326 813 False 832.000000 832 85.662 1 794 1 chr2D.!!$F1 793
8 TraesCS5D01G233400 chr6A 592700584 592701380 796 False 830.000000 830 86.015 16 795 1 chr6A.!!$F2 779
9 TraesCS5D01G233400 chr6A 373135081 373135856 775 False 761.000000 761 84.731 16 795 1 chr6A.!!$F1 779
10 TraesCS5D01G233400 chr3A 616709457 616710262 805 False 774.000000 774 84.455 1 795 1 chr3A.!!$F1 794
11 TraesCS5D01G233400 chr3A 688895616 688896426 810 False 763.000000 763 84.166 1 795 1 chr3A.!!$F2 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
736 813 1.446792 CGAATGGCTGAGAGCACGT 60.447 57.895 0.00 0.00 44.75 4.49 F
1436 1549 0.387878 AGCGCTCACTTGAGACTTCG 60.388 55.000 2.64 5.19 44.74 3.79 F
2532 2655 1.680735 AGCTCTCGATCGAAGCTTCAT 59.319 47.619 31.33 19.33 31.02 2.57 F
2892 3015 4.410099 TCCATCTTCCTTTTGAGCACATT 58.590 39.130 0.00 0.00 0.00 2.71 F
3681 3809 0.830648 TGGAGACGATTAAGGGGCAG 59.169 55.000 0.00 0.00 0.00 4.85 F
4340 4844 0.178964 TCTTGGGCAAGGAACAAGGG 60.179 55.000 0.00 0.00 41.35 3.95 F
4341 4845 0.178964 CTTGGGCAAGGAACAAGGGA 60.179 55.000 0.00 0.00 38.29 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 1932 0.035739 TGTAAAAGGTGGAGGTCGCC 59.964 55.000 0.00 0.00 46.19 5.54 R
3054 3177 1.536766 CGAGTTCAATTTCCTGCTGCA 59.463 47.619 0.88 0.88 0.00 4.41 R
3468 3591 1.029947 CGCCCAGAAAATTACGCCCT 61.030 55.000 0.00 0.00 0.00 5.19 R
4330 4834 1.637553 AGTGATGCATCCCTTGTTCCT 59.362 47.619 23.67 4.23 0.00 3.36 R
5336 5852 0.107703 TCTTGTGGTGGATCGGATGC 60.108 55.000 2.14 2.14 0.00 3.91 R
5749 7211 0.676782 ATAAACACGCAGGCTCACCC 60.677 55.000 0.00 0.00 36.11 4.61 R
6021 7483 1.002468 CTCAAACACCAACCAAGCTCG 60.002 52.381 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 28 4.419282 TCAGGAGCATGATTTTTCCCTTT 58.581 39.130 0.00 0.00 0.00 3.11
27 30 3.771479 AGGAGCATGATTTTTCCCTTTCC 59.229 43.478 0.00 0.00 0.00 3.13
31 34 4.283212 AGCATGATTTTTCCCTTTCCGAAA 59.717 37.500 0.00 0.00 0.00 3.46
34 37 6.454795 CATGATTTTTCCCTTTCCGAAAAGA 58.545 36.000 0.00 0.00 43.90 2.52
35 38 6.084326 TGATTTTTCCCTTTCCGAAAAGAG 57.916 37.500 0.00 0.00 43.90 2.85
36 39 4.929819 TTTTTCCCTTTCCGAAAAGAGG 57.070 40.909 0.00 0.00 43.90 3.69
70 73 1.792057 GCGAAATCACAACCGTGCG 60.792 57.895 0.00 0.00 43.28 5.34
186 202 2.357517 AACCGTGCCTCTTGCGAG 60.358 61.111 0.00 0.00 45.60 5.03
285 309 2.029073 CACAACCGTGCCTCTCGT 59.971 61.111 0.00 0.00 36.06 4.18
306 330 2.103432 TGGAAGCAAAACCGTGACTCTA 59.897 45.455 0.00 0.00 0.00 2.43
307 331 2.479275 GGAAGCAAAACCGTGACTCTAC 59.521 50.000 0.00 0.00 0.00 2.59
308 332 1.779569 AGCAAAACCGTGACTCTACG 58.220 50.000 0.00 0.00 43.35 3.51
312 336 3.362693 GCAAAACCGTGACTCTACGAAAG 60.363 47.826 0.00 0.00 46.46 2.62
618 676 1.993301 AGAAAGATCGGGGGAAAACCT 59.007 47.619 0.00 0.00 40.03 3.50
706 783 2.621070 TCTAAAGGAAGCACCCAGAGT 58.379 47.619 0.00 0.00 40.05 3.24
733 810 2.124983 GGCGAATGGCTGAGAGCA 60.125 61.111 0.00 0.00 44.75 4.26
736 813 1.446792 CGAATGGCTGAGAGCACGT 60.447 57.895 0.00 0.00 44.75 4.49
756 833 2.489275 AAGTGGCGCTGGTTGTTGG 61.489 57.895 7.64 0.00 0.00 3.77
760 837 2.281484 GCGCTGGTTGTTGGGAGA 60.281 61.111 0.00 0.00 0.00 3.71
857 941 3.368116 GGCGTTAACACTAGTCTCATGGT 60.368 47.826 6.39 0.00 0.00 3.55
1001 1108 7.340487 AGCCTTTCCATTATTCGATCTTTTTCT 59.660 33.333 0.00 0.00 0.00 2.52
1234 1344 2.647875 CCCAGCGAGATCTAGGCG 59.352 66.667 11.40 5.43 0.00 5.52
1436 1549 0.387878 AGCGCTCACTTGAGACTTCG 60.388 55.000 2.64 5.19 44.74 3.79
1457 1570 3.753272 CGGAACAATCATCCACTTTCTGT 59.247 43.478 0.00 0.00 36.74 3.41
1491 1605 5.670097 CACAACAGTTTCTGATCTTGTACG 58.330 41.667 3.70 0.00 35.18 3.67
1526 1640 3.169099 AGTTCAGTATCTGCTCCAGTGT 58.831 45.455 0.00 0.00 32.61 3.55
1561 1675 3.198068 GCGACTCAGATTGGAATAAGCA 58.802 45.455 0.00 0.00 0.00 3.91
1673 1794 6.037610 GGGTGTTCAAGATTGCAGACTAATAG 59.962 42.308 0.00 0.00 0.00 1.73
1723 1844 7.041107 GGATATATTCTAGAGCCTGCTTGAAG 58.959 42.308 0.00 0.00 34.18 3.02
1762 1883 7.651998 CGACTCGTAGTGTGATAAACTTTTAC 58.348 38.462 0.00 0.00 32.91 2.01
1792 1913 8.574251 TGTATTTACAAGCACATAAGAATGGT 57.426 30.769 0.00 0.00 33.58 3.55
1794 1915 6.892658 TTTACAAGCACATAAGAATGGTGT 57.107 33.333 0.00 0.00 37.43 4.16
1796 1917 4.397420 ACAAGCACATAAGAATGGTGTGA 58.603 39.130 8.74 0.00 44.48 3.58
1798 1919 6.179756 ACAAGCACATAAGAATGGTGTGATA 58.820 36.000 8.74 0.00 44.48 2.15
1799 1920 6.658816 ACAAGCACATAAGAATGGTGTGATAA 59.341 34.615 8.74 0.00 44.48 1.75
1800 1921 7.176515 ACAAGCACATAAGAATGGTGTGATAAA 59.823 33.333 8.74 0.00 44.48 1.40
1801 1922 7.088589 AGCACATAAGAATGGTGTGATAAAC 57.911 36.000 8.74 0.00 44.48 2.01
1802 1923 6.886459 AGCACATAAGAATGGTGTGATAAACT 59.114 34.615 8.74 0.00 44.48 2.66
1804 1925 8.028938 GCACATAAGAATGGTGTGATAAACTTT 58.971 33.333 8.74 0.00 44.48 2.66
1805 1926 9.912634 CACATAAGAATGGTGTGATAAACTTTT 57.087 29.630 0.00 0.00 44.48 2.27
1811 1932 9.912634 AGAATGGTGTGATAAACTTTTACATTG 57.087 29.630 0.00 0.00 0.00 2.82
1812 1933 9.139174 GAATGGTGTGATAAACTTTTACATTGG 57.861 33.333 0.00 0.00 0.00 3.16
1813 1934 6.451393 TGGTGTGATAAACTTTTACATTGGC 58.549 36.000 0.00 0.00 0.00 4.52
1817 1938 5.798434 GTGATAAACTTTTACATTGGCGACC 59.202 40.000 0.00 0.00 0.00 4.79
1818 1939 5.708230 TGATAAACTTTTACATTGGCGACCT 59.292 36.000 0.00 0.00 0.00 3.85
1819 1940 4.499037 AAACTTTTACATTGGCGACCTC 57.501 40.909 0.00 0.00 0.00 3.85
1820 1941 2.433436 ACTTTTACATTGGCGACCTCC 58.567 47.619 0.00 0.00 0.00 4.30
1971 2092 2.494073 GCTACTAGTTGTCCACAGCTCT 59.506 50.000 0.00 0.00 38.40 4.09
1978 2099 3.073062 AGTTGTCCACAGCTCTACCATTT 59.927 43.478 0.00 0.00 31.59 2.32
1991 2112 6.044754 AGCTCTACCATTTTGATATCATCCCA 59.955 38.462 6.17 0.00 0.00 4.37
1994 2115 9.305555 CTCTACCATTTTGATATCATCCCATTT 57.694 33.333 6.17 0.00 0.00 2.32
2004 2125 6.434965 TGATATCATCCCATTTTCATTCGCAT 59.565 34.615 0.00 0.00 0.00 4.73
2016 2137 2.553602 TCATTCGCATGTTTTGTGAGCT 59.446 40.909 0.00 0.00 45.20 4.09
2035 2156 8.154856 TGTGAGCTTACTCTAACACCTTAAAAT 58.845 33.333 10.29 0.00 43.85 1.82
2036 2157 9.000486 GTGAGCTTACTCTAACACCTTAAAATT 58.000 33.333 0.49 0.00 43.85 1.82
2084 2207 7.687941 TTTTGTGAAAGATCCTCATAGAACC 57.312 36.000 0.00 0.00 0.00 3.62
2104 2227 2.166254 CCTTCCCAACATAACATGCCAC 59.834 50.000 0.00 0.00 0.00 5.01
2532 2655 1.680735 AGCTCTCGATCGAAGCTTCAT 59.319 47.619 31.33 19.33 31.02 2.57
2892 3015 4.410099 TCCATCTTCCTTTTGAGCACATT 58.590 39.130 0.00 0.00 0.00 2.71
3681 3809 0.830648 TGGAGACGATTAAGGGGCAG 59.169 55.000 0.00 0.00 0.00 4.85
3733 3861 2.290641 GACACTGTTCTTGCGTGGAAAT 59.709 45.455 0.00 0.00 33.13 2.17
3742 3870 3.561310 TCTTGCGTGGAAATAGCATGATC 59.439 43.478 0.00 0.00 40.83 2.92
3887 4373 7.148623 GGACATAGCACTGAAACTAACTTACAC 60.149 40.741 0.00 0.00 0.00 2.90
4101 4589 5.464965 AAACGATGGTGCTTTATCTTACG 57.535 39.130 0.00 0.00 0.00 3.18
4104 4592 5.839621 ACGATGGTGCTTTATCTTACGTAT 58.160 37.500 0.00 0.00 0.00 3.06
4148 4636 2.087501 TACCTGTTGCATGGTGTACG 57.912 50.000 14.39 0.00 37.74 3.67
4179 4667 6.040842 GTGATGATGTATACCTTGGGCAAATT 59.959 38.462 0.00 0.00 0.00 1.82
4330 4834 7.226325 CAGTGTTTCAAATAAAATCTTGGGCAA 59.774 33.333 0.00 0.00 0.00 4.52
4331 4835 7.442062 AGTGTTTCAAATAAAATCTTGGGCAAG 59.558 33.333 0.00 0.00 39.71 4.01
4332 4836 6.709846 TGTTTCAAATAAAATCTTGGGCAAGG 59.290 34.615 0.00 0.00 38.88 3.61
4333 4837 6.678568 TTCAAATAAAATCTTGGGCAAGGA 57.321 33.333 0.00 0.00 38.88 3.36
4334 4838 6.678568 TCAAATAAAATCTTGGGCAAGGAA 57.321 33.333 0.00 0.00 38.88 3.36
4335 4839 6.463360 TCAAATAAAATCTTGGGCAAGGAAC 58.537 36.000 0.00 0.00 38.88 3.62
4336 4840 6.042552 TCAAATAAAATCTTGGGCAAGGAACA 59.957 34.615 0.00 0.00 38.88 3.18
4337 4841 6.432403 AATAAAATCTTGGGCAAGGAACAA 57.568 33.333 0.00 0.00 38.88 2.83
4338 4842 4.341366 AAAATCTTGGGCAAGGAACAAG 57.659 40.909 0.00 0.00 42.14 3.16
4339 4843 1.928868 ATCTTGGGCAAGGAACAAGG 58.071 50.000 0.00 0.00 41.35 3.61
4340 4844 0.178964 TCTTGGGCAAGGAACAAGGG 60.179 55.000 0.00 0.00 41.35 3.95
4341 4845 0.178964 CTTGGGCAAGGAACAAGGGA 60.179 55.000 0.00 0.00 38.29 4.20
4440 4944 0.455410 TTCATAGGCGGTGCAAATGC 59.545 50.000 0.00 0.00 42.50 3.56
4514 5018 6.428385 GGAAGAGTCCAACATATGAGTTTG 57.572 41.667 10.38 3.64 44.26 2.93
4876 5381 5.587388 AATCCAATGCTGATAAACACTGG 57.413 39.130 0.00 0.00 0.00 4.00
4994 5499 0.464452 GGGCTAGCTACCACGTCAAT 59.536 55.000 15.72 0.00 0.00 2.57
5048 5554 1.631388 TCTATTCTGGGCGGTGGAAAA 59.369 47.619 0.00 0.00 0.00 2.29
5061 5567 2.354003 GGTGGAAAATGCATCTGGTTGG 60.354 50.000 0.00 0.00 0.00 3.77
5091 5597 5.955959 TGCTTAAGATGGTAGGTAGAGTTCA 59.044 40.000 6.67 0.00 0.00 3.18
5127 5633 8.439971 TGGGCATATCTGATGTTCTATTAACTT 58.560 33.333 0.00 0.00 0.00 2.66
5224 5730 2.186384 CCCAGAAGAGAGCTGCCG 59.814 66.667 0.00 0.00 32.06 5.69
5263 5769 2.039879 GGTGTGTTATGGACCCTCAAGT 59.960 50.000 0.00 0.00 0.00 3.16
5336 5852 0.397941 TCTGTCTGCCCTCTTGTTGG 59.602 55.000 0.00 0.00 0.00 3.77
5348 5864 0.734889 CTTGTTGGCATCCGATCCAC 59.265 55.000 0.00 0.00 30.97 4.02
5351 5867 1.077787 TTGGCATCCGATCCACCAC 60.078 57.895 0.00 0.00 30.97 4.16
5412 5928 0.792640 GTGATCACGTTGTCAGCTGG 59.207 55.000 15.13 0.00 0.00 4.85
5437 5953 5.704978 TGCTTATGCATGACTGAACTTGTTA 59.295 36.000 10.16 0.00 45.31 2.41
5458 5978 6.906143 TGTTACTCCGTCGTGTTTTAATTTTG 59.094 34.615 0.00 0.00 0.00 2.44
5468 5990 7.577668 GTCGTGTTTTAATTTTGTTGCTTTAGC 59.422 33.333 0.00 0.00 42.50 3.09
5478 6000 5.683876 TTGTTGCTTTAGCTCTCTAGGAT 57.316 39.130 3.10 0.00 42.66 3.24
5485 6007 5.414765 GCTTTAGCTCTCTAGGATCCTAGTC 59.585 48.000 36.85 26.13 41.12 2.59
5519 6043 1.313812 CGGCTGTAGGAACTCTCGGT 61.314 60.000 0.00 0.00 41.75 4.69
5661 7123 0.317603 CTTCGACGACGTTGTCAGGT 60.318 55.000 30.33 0.00 38.84 4.00
5728 7190 4.996793 TCCTGAATGATCAAGGTTTTGGA 58.003 39.130 10.98 5.47 34.49 3.53
5749 7211 2.504367 AGGATTCAGTTCGTTTGGTGG 58.496 47.619 0.00 0.00 0.00 4.61
5848 7310 4.804108 TGCAAACGGGAATACAAAATCAG 58.196 39.130 0.00 0.00 0.00 2.90
5877 7339 7.189693 TGAAGCACACAGAAGTTTTATACTG 57.810 36.000 0.00 0.00 37.12 2.74
5878 7340 6.765989 TGAAGCACACAGAAGTTTTATACTGT 59.234 34.615 0.00 0.00 43.05 3.55
5879 7341 7.929245 TGAAGCACACAGAAGTTTTATACTGTA 59.071 33.333 0.00 0.00 40.84 2.74
5880 7342 8.848474 AAGCACACAGAAGTTTTATACTGTAT 57.152 30.769 5.53 5.53 40.84 2.29
5913 7375 1.069500 GGAACACCCGAACGACATTTG 60.069 52.381 0.00 0.00 0.00 2.32
6010 7472 1.079750 GTCTCGGCTCACCTGAACC 60.080 63.158 0.00 0.00 0.00 3.62
6031 7493 2.501261 GGAAGGTAAACGAGCTTGGTT 58.499 47.619 9.73 9.73 45.96 3.67
6032 7494 2.225727 GGAAGGTAAACGAGCTTGGTTG 59.774 50.000 14.92 0.00 45.96 3.77
6045 7507 2.223805 GCTTGGTTGGTGTTTGAGGAAG 60.224 50.000 0.00 0.00 0.00 3.46
6080 7542 7.817418 AACTGAAAGCTAACAACCTTCAATA 57.183 32.000 0.00 0.00 37.60 1.90
6083 7545 8.947115 ACTGAAAGCTAACAACCTTCAATATAC 58.053 33.333 0.00 0.00 37.60 1.47
6142 7608 7.871463 AGATTAACCACTATTATCTGTAACGGC 59.129 37.037 0.00 0.00 0.00 5.68
6148 7614 6.036300 CCACTATTATCTGTAACGGCGAAAAA 59.964 38.462 16.62 0.00 0.00 1.94
6149 7615 7.254658 CCACTATTATCTGTAACGGCGAAAAAT 60.255 37.037 16.62 1.63 0.00 1.82
6188 7654 1.225855 CAAGTGGCTAGCGACAACAA 58.774 50.000 28.47 0.00 0.00 2.83
6209 7675 6.336566 ACAAACATTGTTGCATCAAACACTA 58.663 32.000 13.88 0.00 42.22 2.74
6211 7677 7.495279 ACAAACATTGTTGCATCAAACACTATT 59.505 29.630 13.88 2.49 42.22 1.73
6212 7678 7.410800 AACATTGTTGCATCAAACACTATTG 57.589 32.000 13.88 8.48 39.70 1.90
6213 7679 6.747125 ACATTGTTGCATCAAACACTATTGA 58.253 32.000 13.88 0.00 43.03 2.57
6215 7681 7.874016 ACATTGTTGCATCAAACACTATTGATT 59.126 29.630 13.88 0.00 45.39 2.57
6216 7682 9.356433 CATTGTTGCATCAAACACTATTGATTA 57.644 29.630 13.88 0.00 45.39 1.75
6218 7684 8.109705 TGTTGCATCAAACACTATTGATTAGT 57.890 30.769 0.00 0.00 45.39 2.24
6219 7685 8.236586 TGTTGCATCAAACACTATTGATTAGTC 58.763 33.333 0.00 0.00 45.39 2.59
6220 7686 7.003939 TGCATCAAACACTATTGATTAGTCG 57.996 36.000 0.01 0.00 45.39 4.18
6221 7687 6.816140 TGCATCAAACACTATTGATTAGTCGA 59.184 34.615 0.01 0.00 45.39 4.20
6222 7688 7.010460 TGCATCAAACACTATTGATTAGTCGAG 59.990 37.037 0.01 0.00 45.39 4.04
6223 7689 7.010552 GCATCAAACACTATTGATTAGTCGAGT 59.989 37.037 0.00 0.00 45.39 4.18
6224 7690 9.516314 CATCAAACACTATTGATTAGTCGAGTA 57.484 33.333 0.00 0.00 45.39 2.59
6226 7692 9.569167 TCAAACACTATTGATTAGTCGAGTAAG 57.431 33.333 17.23 5.96 39.19 2.34
6230 7696 8.958506 ACACTATTGATTAGTCGAGTAAGAACT 58.041 33.333 17.23 1.51 39.19 3.01
6241 8161 3.985925 CGAGTAAGAACTAGCAAAACCGT 59.014 43.478 0.00 0.00 35.56 4.83
6242 8162 4.089636 CGAGTAAGAACTAGCAAAACCGTC 59.910 45.833 0.00 0.00 35.56 4.79
6243 8163 3.985925 AGTAAGAACTAGCAAAACCGTCG 59.014 43.478 0.00 0.00 32.84 5.12
6263 8183 2.594654 CGATCGTGTTCTAACTCACTGC 59.405 50.000 7.03 0.00 33.07 4.40
6266 8186 3.120792 TCGTGTTCTAACTCACTGCAAC 58.879 45.455 0.00 0.00 33.07 4.17
6267 8187 2.221055 CGTGTTCTAACTCACTGCAACC 59.779 50.000 0.00 0.00 33.07 3.77
6287 8208 4.001618 CCGGGTTGGTGATTTTTGATTT 57.998 40.909 0.00 0.00 0.00 2.17
6298 8219 7.330700 TGGTGATTTTTGATTTTAATTCTCGCC 59.669 33.333 0.00 0.00 0.00 5.54
6318 8239 4.156182 GCCGCAGTCAAACACTATTAAAC 58.844 43.478 0.00 0.00 32.21 2.01
6319 8240 4.083484 GCCGCAGTCAAACACTATTAAACT 60.083 41.667 0.00 0.00 32.21 2.66
6320 8241 5.121142 GCCGCAGTCAAACACTATTAAACTA 59.879 40.000 0.00 0.00 32.21 2.24
6321 8242 6.672357 GCCGCAGTCAAACACTATTAAACTAG 60.672 42.308 0.00 0.00 32.21 2.57
6322 8243 6.588756 CCGCAGTCAAACACTATTAAACTAGA 59.411 38.462 0.00 0.00 32.21 2.43
6323 8244 7.117236 CCGCAGTCAAACACTATTAAACTAGAA 59.883 37.037 0.00 0.00 32.21 2.10
6324 8245 8.656849 CGCAGTCAAACACTATTAAACTAGAAT 58.343 33.333 0.00 0.00 32.21 2.40
6325 8246 9.974750 GCAGTCAAACACTATTAAACTAGAATC 57.025 33.333 0.00 0.00 32.21 2.52
6329 8250 9.162764 TCAAACACTATTAAACTAGAATCCAGC 57.837 33.333 0.00 0.00 0.00 4.85
6332 8253 8.312669 ACACTATTAAACTAGAATCCAGCTCT 57.687 34.615 0.00 0.00 0.00 4.09
6333 8254 9.422681 ACACTATTAAACTAGAATCCAGCTCTA 57.577 33.333 0.00 0.00 0.00 2.43
6349 8559 8.723942 TCCAGCTCTAATCTAAAATTCTTGTC 57.276 34.615 0.00 0.00 0.00 3.18
6400 8627 7.148869 TGTGAATACGACTCATGAGTAAAAACG 60.149 37.037 27.95 25.80 42.66 3.60
6405 8644 5.521010 ACGACTCATGAGTAAAAACGTTTGA 59.479 36.000 27.95 4.58 42.66 2.69
6406 8645 6.036300 ACGACTCATGAGTAAAAACGTTTGAA 59.964 34.615 27.95 2.68 42.66 2.69
6407 8646 6.353582 CGACTCATGAGTAAAAACGTTTGAAC 59.646 38.462 27.95 15.11 42.66 3.18
6408 8647 7.079182 ACTCATGAGTAAAAACGTTTGAACA 57.921 32.000 26.87 10.96 40.43 3.18
6409 8648 6.964934 ACTCATGAGTAAAAACGTTTGAACAC 59.035 34.615 26.87 13.96 40.43 3.32
6410 8649 5.960683 TCATGAGTAAAAACGTTTGAACACG 59.039 36.000 15.46 4.31 46.04 4.49
6411 8650 4.090034 TGAGTAAAAACGTTTGAACACGC 58.910 39.130 15.46 11.73 44.37 5.34
6412 8651 4.142859 TGAGTAAAAACGTTTGAACACGCT 60.143 37.500 15.46 6.29 44.37 5.07
6413 8652 4.092816 AGTAAAAACGTTTGAACACGCTG 58.907 39.130 15.46 0.00 44.37 5.18
6446 8699 2.404789 CCATCATGCGTTGGCGTC 59.595 61.111 0.00 0.00 44.10 5.19
6466 8719 1.268032 CGCCATACCTTTTGACATCGC 60.268 52.381 0.00 0.00 0.00 4.58
6478 8731 1.893137 TGACATCGCCAGTACAAGACT 59.107 47.619 0.00 0.00 39.82 3.24
6479 8732 2.299013 TGACATCGCCAGTACAAGACTT 59.701 45.455 0.00 0.00 35.64 3.01
6523 8778 9.181805 ACAGATGTCGATTTTTACTCGTATATG 57.818 33.333 0.00 0.00 37.40 1.78
6524 8779 8.156553 CAGATGTCGATTTTTACTCGTATATGC 58.843 37.037 0.00 0.00 37.40 3.14
6542 8797 3.071206 GTCGCCTGCAGGAGAGGA 61.071 66.667 35.96 22.55 44.62 3.71
6543 8798 2.757508 TCGCCTGCAGGAGAGGAG 60.758 66.667 37.21 17.88 39.12 3.69
6544 8799 2.757508 CGCCTGCAGGAGAGGAGA 60.758 66.667 37.21 0.00 37.14 3.71
6545 8800 2.784356 CGCCTGCAGGAGAGGAGAG 61.784 68.421 37.21 11.60 37.14 3.20
6546 8801 2.433994 GCCTGCAGGAGAGGAGAGG 61.434 68.421 37.21 6.97 37.39 3.69
6547 8802 1.309347 CCTGCAGGAGAGGAGAGGA 59.691 63.158 29.88 0.00 37.39 3.71
6548 8803 0.325110 CCTGCAGGAGAGGAGAGGAA 60.325 60.000 29.88 0.00 37.39 3.36
6549 8804 0.823460 CTGCAGGAGAGGAGAGGAAC 59.177 60.000 5.57 0.00 0.00 3.62
6550 8805 4.887258 CCTGCAGGAGAGGAGAGGAACT 62.887 59.091 29.88 0.00 38.83 3.01
6551 8806 1.641192 TGCAGGAGAGGAGAGGAACTA 59.359 52.381 0.00 0.00 41.55 2.24
6552 8807 2.306847 GCAGGAGAGGAGAGGAACTAG 58.693 57.143 0.00 0.00 41.55 2.57
6553 8808 2.306847 CAGGAGAGGAGAGGAACTAGC 58.693 57.143 0.00 0.00 41.55 3.42
6554 8809 2.091885 CAGGAGAGGAGAGGAACTAGCT 60.092 54.545 0.00 0.00 41.55 3.32
6555 8810 3.137544 CAGGAGAGGAGAGGAACTAGCTA 59.862 52.174 0.00 0.00 41.55 3.32
6556 8811 3.394606 AGGAGAGGAGAGGAACTAGCTAG 59.605 52.174 19.44 19.44 41.55 3.42
6557 8812 3.497942 GGAGAGGAGAGGAACTAGCTAGG 60.498 56.522 24.35 7.13 41.55 3.02
6558 8813 3.393278 GAGAGGAGAGGAACTAGCTAGGA 59.607 52.174 24.35 0.00 41.55 2.94
6559 8814 3.394606 AGAGGAGAGGAACTAGCTAGGAG 59.605 52.174 24.35 2.78 41.55 3.69
6582 8837 0.324943 CCACGGACCAGGAGATTTGT 59.675 55.000 0.00 0.00 0.00 2.83
6589 8844 3.515901 GGACCAGGAGATTTGTAGTGACT 59.484 47.826 0.00 0.00 0.00 3.41
6643 8904 5.652452 AGCGCCAGGAGATATTTTTACTTTT 59.348 36.000 2.29 0.00 0.00 2.27
6644 8905 5.971792 GCGCCAGGAGATATTTTTACTTTTC 59.028 40.000 0.00 0.00 0.00 2.29
6645 8906 6.183360 GCGCCAGGAGATATTTTTACTTTTCT 60.183 38.462 0.00 0.00 0.00 2.52
6721 9001 4.037208 AGTTCGATCCGGTCAAATACGTAT 59.963 41.667 1.14 1.14 0.00 3.06
6725 9005 6.502652 TCGATCCGGTCAAATACGTATAAAA 58.497 36.000 8.83 0.00 0.00 1.52
6728 9008 8.368126 CGATCCGGTCAAATACGTATAAAATAC 58.632 37.037 8.83 3.59 0.00 1.89
6729 9009 7.621832 TCCGGTCAAATACGTATAAAATACG 57.378 36.000 8.83 15.77 45.44 3.06
6751 9031 7.478520 ACGTATTATACATCCTTTTGTCAGC 57.521 36.000 3.16 0.00 0.00 4.26
6756 9036 2.417719 ACATCCTTTTGTCAGCGAGTC 58.582 47.619 0.00 0.00 0.00 3.36
6767 9047 5.836821 TGTCAGCGAGTCTATTAGTTGAT 57.163 39.130 0.00 0.00 0.00 2.57
6780 9060 8.913656 GTCTATTAGTTGATCCGCTAATGTTAC 58.086 37.037 20.25 14.27 38.10 2.50
6781 9061 8.635328 TCTATTAGTTGATCCGCTAATGTTACA 58.365 33.333 20.25 0.00 38.10 2.41
6782 9062 7.715265 ATTAGTTGATCCGCTAATGTTACAG 57.285 36.000 14.35 0.00 36.77 2.74
6783 9063 3.871594 AGTTGATCCGCTAATGTTACAGC 59.128 43.478 0.00 0.00 0.00 4.40
6792 9072 5.914085 GCTAATGTTACAGCGATCTTGAT 57.086 39.130 0.00 0.00 0.00 2.57
6793 9073 6.292389 GCTAATGTTACAGCGATCTTGATT 57.708 37.500 0.00 0.00 0.00 2.57
6794 9074 6.132056 GCTAATGTTACAGCGATCTTGATTG 58.868 40.000 0.00 0.00 0.00 2.67
6795 9075 6.238211 GCTAATGTTACAGCGATCTTGATTGT 60.238 38.462 0.00 0.00 0.00 2.71
6796 9076 4.926860 TGTTACAGCGATCTTGATTGTG 57.073 40.909 0.00 1.13 0.00 3.33
6797 9077 4.565022 TGTTACAGCGATCTTGATTGTGA 58.435 39.130 0.00 0.00 0.00 3.58
6798 9078 4.627035 TGTTACAGCGATCTTGATTGTGAG 59.373 41.667 0.00 0.00 0.00 3.51
6799 9079 3.599730 ACAGCGATCTTGATTGTGAGA 57.400 42.857 0.00 0.00 0.00 3.27
6800 9080 4.134379 ACAGCGATCTTGATTGTGAGAT 57.866 40.909 0.00 0.00 35.41 2.75
6801 9081 4.118410 ACAGCGATCTTGATTGTGAGATC 58.882 43.478 3.81 3.81 43.01 2.75
6802 9082 4.117685 CAGCGATCTTGATTGTGAGATCA 58.882 43.478 12.29 0.00 45.43 2.92
6803 9083 4.209495 CAGCGATCTTGATTGTGAGATCAG 59.791 45.833 12.29 7.22 45.43 2.90
6804 9084 4.118410 GCGATCTTGATTGTGAGATCAGT 58.882 43.478 12.29 0.00 45.43 3.41
6805 9085 4.569966 GCGATCTTGATTGTGAGATCAGTT 59.430 41.667 12.29 0.00 45.43 3.16
6806 9086 5.502058 GCGATCTTGATTGTGAGATCAGTTG 60.502 44.000 12.29 0.00 45.43 3.16
6807 9087 5.809051 CGATCTTGATTGTGAGATCAGTTGA 59.191 40.000 12.29 0.00 45.43 3.18
6808 9088 6.237781 CGATCTTGATTGTGAGATCAGTTGAC 60.238 42.308 12.29 0.00 45.43 3.18
6809 9089 6.106648 TCTTGATTGTGAGATCAGTTGACT 57.893 37.500 0.00 0.00 37.35 3.41
6810 9090 7.232118 TCTTGATTGTGAGATCAGTTGACTA 57.768 36.000 0.00 0.00 37.35 2.59
6811 9091 7.318893 TCTTGATTGTGAGATCAGTTGACTAG 58.681 38.462 0.00 0.00 37.35 2.57
6812 9092 6.596309 TGATTGTGAGATCAGTTGACTAGT 57.404 37.500 0.00 0.00 32.50 2.57
6813 9093 6.625362 TGATTGTGAGATCAGTTGACTAGTC 58.375 40.000 16.32 16.32 32.50 2.59
6814 9094 6.435591 TGATTGTGAGATCAGTTGACTAGTCT 59.564 38.462 23.01 1.93 32.50 3.24
6815 9095 5.635417 TGTGAGATCAGTTGACTAGTCTG 57.365 43.478 23.01 13.49 0.00 3.51
6816 9096 5.073428 TGTGAGATCAGTTGACTAGTCTGT 58.927 41.667 23.01 5.50 0.00 3.41
6817 9097 6.238648 TGTGAGATCAGTTGACTAGTCTGTA 58.761 40.000 23.01 6.63 0.00 2.74
6818 9098 6.715264 TGTGAGATCAGTTGACTAGTCTGTAA 59.285 38.462 23.01 7.21 0.00 2.41
6819 9099 7.024768 GTGAGATCAGTTGACTAGTCTGTAAC 58.975 42.308 23.01 17.97 0.00 2.50
6820 9100 6.715264 TGAGATCAGTTGACTAGTCTGTAACA 59.285 38.462 23.01 5.89 0.00 2.41
6821 9101 7.394641 TGAGATCAGTTGACTAGTCTGTAACAT 59.605 37.037 23.01 9.92 0.00 2.71
6822 9102 8.128322 AGATCAGTTGACTAGTCTGTAACATT 57.872 34.615 23.01 8.49 0.00 2.71
6823 9103 8.247562 AGATCAGTTGACTAGTCTGTAACATTC 58.752 37.037 23.01 15.07 0.00 2.67
6824 9104 6.688578 TCAGTTGACTAGTCTGTAACATTCC 58.311 40.000 23.01 0.00 0.00 3.01
6825 9105 6.266786 TCAGTTGACTAGTCTGTAACATTCCA 59.733 38.462 23.01 0.00 0.00 3.53
6826 9106 6.929049 CAGTTGACTAGTCTGTAACATTCCAA 59.071 38.462 23.01 3.03 0.00 3.53
6827 9107 7.441157 CAGTTGACTAGTCTGTAACATTCCAAA 59.559 37.037 23.01 2.19 0.00 3.28
6828 9108 8.157476 AGTTGACTAGTCTGTAACATTCCAAAT 58.843 33.333 23.01 2.43 0.00 2.32
6829 9109 8.784043 GTTGACTAGTCTGTAACATTCCAAATT 58.216 33.333 23.01 0.00 0.00 1.82
6830 9110 8.918202 TGACTAGTCTGTAACATTCCAAATTT 57.082 30.769 23.01 0.00 0.00 1.82
6831 9111 9.349713 TGACTAGTCTGTAACATTCCAAATTTT 57.650 29.630 23.01 0.00 0.00 1.82
6832 9112 9.612620 GACTAGTCTGTAACATTCCAAATTTTG 57.387 33.333 15.91 1.99 0.00 2.44
6854 9134 8.964420 TTTGGCTTGATTTTAGAAATTCTACG 57.036 30.769 1.61 0.00 0.00 3.51
6855 9135 6.551736 TGGCTTGATTTTAGAAATTCTACGC 58.448 36.000 1.61 0.00 0.00 4.42
6856 9136 6.150307 TGGCTTGATTTTAGAAATTCTACGCA 59.850 34.615 1.61 0.00 0.00 5.24
6857 9137 7.027161 GGCTTGATTTTAGAAATTCTACGCAA 58.973 34.615 1.61 4.55 0.00 4.85
6858 9138 7.008357 GGCTTGATTTTAGAAATTCTACGCAAC 59.992 37.037 1.61 0.00 0.00 4.17
6859 9139 7.750903 GCTTGATTTTAGAAATTCTACGCAACT 59.249 33.333 1.61 0.00 0.00 3.16
6860 9140 9.267096 CTTGATTTTAGAAATTCTACGCAACTC 57.733 33.333 1.61 0.33 0.00 3.01
6861 9141 8.317891 TGATTTTAGAAATTCTACGCAACTCA 57.682 30.769 1.61 2.74 0.00 3.41
6862 9142 8.779303 TGATTTTAGAAATTCTACGCAACTCAA 58.221 29.630 1.61 0.00 0.00 3.02
6863 9143 9.267096 GATTTTAGAAATTCTACGCAACTCAAG 57.733 33.333 1.61 0.00 0.00 3.02
6864 9144 6.721571 TTAGAAATTCTACGCAACTCAAGG 57.278 37.500 1.61 0.00 0.00 3.61
6865 9145 4.894784 AGAAATTCTACGCAACTCAAGGA 58.105 39.130 0.00 0.00 0.00 3.36
6866 9146 4.691216 AGAAATTCTACGCAACTCAAGGAC 59.309 41.667 0.00 0.00 0.00 3.85
6867 9147 2.450609 TTCTACGCAACTCAAGGACC 57.549 50.000 0.00 0.00 0.00 4.46
6868 9148 0.606604 TCTACGCAACTCAAGGACCC 59.393 55.000 0.00 0.00 0.00 4.46
6869 9149 0.320374 CTACGCAACTCAAGGACCCA 59.680 55.000 0.00 0.00 0.00 4.51
6870 9150 0.034337 TACGCAACTCAAGGACCCAC 59.966 55.000 0.00 0.00 0.00 4.61
6871 9151 2.317609 CGCAACTCAAGGACCCACG 61.318 63.158 0.00 0.00 0.00 4.94
6872 9152 1.966451 GCAACTCAAGGACCCACGG 60.966 63.158 0.00 0.00 0.00 4.94
6873 9153 1.752198 CAACTCAAGGACCCACGGA 59.248 57.895 0.00 0.00 0.00 4.69
6874 9154 0.320771 CAACTCAAGGACCCACGGAG 60.321 60.000 0.00 0.00 0.00 4.63
6875 9155 0.471211 AACTCAAGGACCCACGGAGA 60.471 55.000 6.37 0.00 0.00 3.71
6876 9156 0.900647 ACTCAAGGACCCACGGAGAG 60.901 60.000 6.37 0.00 0.00 3.20
6877 9157 0.612174 CTCAAGGACCCACGGAGAGA 60.612 60.000 0.00 0.00 0.00 3.10
6878 9158 0.612174 TCAAGGACCCACGGAGAGAG 60.612 60.000 0.00 0.00 0.00 3.20
6879 9159 0.900647 CAAGGACCCACGGAGAGAGT 60.901 60.000 0.00 0.00 0.00 3.24
6880 9160 0.178929 AAGGACCCACGGAGAGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
6881 9161 0.900647 AGGACCCACGGAGAGAGTTG 60.901 60.000 0.00 0.00 0.00 3.16
6882 9162 1.592223 GACCCACGGAGAGAGTTGG 59.408 63.158 0.00 0.00 0.00 3.77
6883 9163 1.889530 GACCCACGGAGAGAGTTGGG 61.890 65.000 3.87 3.87 42.05 4.12
6884 9164 2.660064 CCCACGGAGAGAGTTGGGG 61.660 68.421 0.00 0.00 33.17 4.96
6885 9165 1.609501 CCACGGAGAGAGTTGGGGA 60.610 63.158 0.00 0.00 0.00 4.81
6886 9166 0.978146 CCACGGAGAGAGTTGGGGAT 60.978 60.000 0.00 0.00 0.00 3.85
6887 9167 0.905357 CACGGAGAGAGTTGGGGATT 59.095 55.000 0.00 0.00 0.00 3.01
6888 9168 1.279271 CACGGAGAGAGTTGGGGATTT 59.721 52.381 0.00 0.00 0.00 2.17
6889 9169 1.555533 ACGGAGAGAGTTGGGGATTTC 59.444 52.381 0.00 0.00 0.00 2.17
6890 9170 1.555075 CGGAGAGAGTTGGGGATTTCA 59.445 52.381 0.00 0.00 0.00 2.69
6891 9171 2.171448 CGGAGAGAGTTGGGGATTTCAT 59.829 50.000 0.00 0.00 0.00 2.57
6892 9172 3.370953 CGGAGAGAGTTGGGGATTTCATT 60.371 47.826 0.00 0.00 0.00 2.57
6893 9173 4.141711 CGGAGAGAGTTGGGGATTTCATTA 60.142 45.833 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.744940 AGGGAAAAATCATGCTCCTGA 57.255 42.857 0.00 0.00 0.00 3.86
14 16 5.010719 GTCCTCTTTTCGGAAAGGGAAAAAT 59.989 40.000 18.17 0.00 44.58 1.82
25 28 2.660802 GGGCGTCCTCTTTTCGGA 59.339 61.111 0.00 0.00 0.00 4.55
27 30 2.048503 ACGGGCGTCCTCTTTTCG 60.049 61.111 3.66 0.00 0.00 3.46
70 73 1.329599 ACGGTTTTGCTTTCACGAGAC 59.670 47.619 0.00 0.00 0.00 3.36
186 202 0.784778 CGAGAGTCACGGTTTTGCTC 59.215 55.000 1.62 0.00 0.00 4.26
285 309 1.134220 AGAGTCACGGTTTTGCTTCCA 60.134 47.619 0.00 0.00 0.00 3.53
341 370 1.292223 CGTGCCTCTCGAAAAGGGA 59.708 57.895 13.81 9.19 34.26 4.20
369 398 2.174969 ACGGTTGTGCTTTCGCGAA 61.175 52.632 19.38 19.38 39.65 4.70
473 509 2.996621 GTTGTGCTTTAGCGAGAGTCAT 59.003 45.455 0.00 0.00 45.83 3.06
589 647 5.437060 TCCCCCGATCTTTCTTATCTTTTG 58.563 41.667 0.00 0.00 0.00 2.44
595 653 4.229812 AGGTTTTCCCCCGATCTTTCTTAT 59.770 41.667 0.00 0.00 41.86 1.73
605 663 0.321346 GACGTTAGGTTTTCCCCCGA 59.679 55.000 0.00 0.00 41.86 5.14
641 706 3.241091 CGCGTTTTCGGCTTTTTAAACTT 59.759 39.130 0.00 0.00 44.29 2.66
642 707 2.784928 CGCGTTTTCGGCTTTTTAAACT 59.215 40.909 0.00 0.00 44.29 2.66
681 746 6.134535 TCTGGGTGCTTCCTTTAGATTTTA 57.865 37.500 0.00 0.00 36.25 1.52
682 747 4.998051 TCTGGGTGCTTCCTTTAGATTTT 58.002 39.130 0.00 0.00 36.25 1.82
683 748 4.043435 ACTCTGGGTGCTTCCTTTAGATTT 59.957 41.667 0.00 0.00 36.25 2.17
712 789 3.869272 CTCAGCCATTCGCCACGC 61.869 66.667 0.00 0.00 38.78 5.34
733 810 3.750373 AACCAGCGCCACTTGACGT 62.750 57.895 2.29 0.00 0.00 4.34
736 813 1.453015 AACAACCAGCGCCACTTGA 60.453 52.632 2.29 0.00 0.00 3.02
749 826 1.264288 CTTCGCAAGTCTCCCAACAAC 59.736 52.381 0.00 0.00 39.48 3.32
756 833 1.807573 CGCTCCTTCGCAAGTCTCC 60.808 63.158 0.00 0.00 39.48 3.71
808 885 1.593196 CCGTCACAGGAAGCAAAAGA 58.407 50.000 0.00 0.00 0.00 2.52
857 941 0.034186 CCTGGCCCAGCAATAACAGA 60.034 55.000 4.81 0.00 0.00 3.41
1001 1108 3.636764 GAGGAAGAAGACAAGGGCAAAAA 59.363 43.478 0.00 0.00 0.00 1.94
1234 1344 0.328258 TAGTTCTCTTTGGGGCTGCC 59.672 55.000 11.05 11.05 0.00 4.85
1436 1549 5.051891 CACAGAAAGTGGATGATTGTTCC 57.948 43.478 0.00 0.00 44.69 3.62
1491 1605 6.540189 AGATACTGAACTATCAATTGTGGCAC 59.460 38.462 11.55 11.55 34.49 5.01
1526 1640 0.599558 AGTCGCCAACACTAACGCTA 59.400 50.000 0.00 0.00 0.00 4.26
1561 1675 7.285629 CACTTTTCCCCTAAGAAAAAGAAGACT 59.714 37.037 12.32 0.00 43.27 3.24
1623 1742 6.325028 CCTCCTAGTCTAAAGACCATCAATCA 59.675 42.308 6.50 0.00 45.85 2.57
1702 1823 4.640364 GCTTCAAGCAGGCTCTAGAATAT 58.360 43.478 3.89 0.00 41.89 1.28
1723 1844 1.201921 CGAGTCGCCAATGTTACTTGC 60.202 52.381 0.00 0.00 0.00 4.01
1762 1883 8.360325 TCTTATGTGCTTGTAAATACATACCG 57.640 34.615 0.00 0.00 36.29 4.02
1792 1913 6.375377 GTCGCCAATGTAAAAGTTTATCACA 58.625 36.000 0.00 0.00 0.00 3.58
1794 1915 5.708230 AGGTCGCCAATGTAAAAGTTTATCA 59.292 36.000 0.00 0.00 0.00 2.15
1796 1917 5.124936 GGAGGTCGCCAATGTAAAAGTTTAT 59.875 40.000 0.00 0.00 0.00 1.40
1798 1919 3.254903 GGAGGTCGCCAATGTAAAAGTTT 59.745 43.478 0.00 0.00 0.00 2.66
1799 1920 2.817844 GGAGGTCGCCAATGTAAAAGTT 59.182 45.455 0.00 0.00 0.00 2.66
1800 1921 2.224670 TGGAGGTCGCCAATGTAAAAGT 60.225 45.455 0.00 0.00 34.31 2.66
1801 1922 2.161609 GTGGAGGTCGCCAATGTAAAAG 59.838 50.000 0.00 0.00 40.20 2.27
1802 1923 2.156098 GTGGAGGTCGCCAATGTAAAA 58.844 47.619 0.00 0.00 40.20 1.52
1804 1925 0.035820 GGTGGAGGTCGCCAATGTAA 60.036 55.000 0.00 0.00 45.19 2.41
1805 1926 1.600107 GGTGGAGGTCGCCAATGTA 59.400 57.895 0.00 0.00 45.19 2.29
1811 1932 0.035739 TGTAAAAGGTGGAGGTCGCC 59.964 55.000 0.00 0.00 46.19 5.54
1812 1933 2.007608 GATGTAAAAGGTGGAGGTCGC 58.992 52.381 0.00 0.00 0.00 5.19
1813 1934 3.611766 AGATGTAAAAGGTGGAGGTCG 57.388 47.619 0.00 0.00 0.00 4.79
1817 1938 6.633500 TGAACAAAGATGTAAAAGGTGGAG 57.367 37.500 0.00 0.00 39.40 3.86
1818 1939 6.378564 TGTTGAACAAAGATGTAAAAGGTGGA 59.621 34.615 0.00 0.00 39.40 4.02
1819 1940 6.568869 TGTTGAACAAAGATGTAAAAGGTGG 58.431 36.000 0.00 0.00 39.40 4.61
1820 1941 8.472683 TTTGTTGAACAAAGATGTAAAAGGTG 57.527 30.769 18.60 0.00 42.55 4.00
1904 2025 7.978975 TGCCCTAACATTAAATAGCAAAATGAC 59.021 33.333 1.59 0.00 35.18 3.06
1949 2070 2.231478 GAGCTGTGGACAACTAGTAGCA 59.769 50.000 12.73 0.00 32.42 3.49
1950 2071 2.494073 AGAGCTGTGGACAACTAGTAGC 59.506 50.000 0.00 0.00 0.00 3.58
1971 2092 9.431690 TGAAAATGGGATGATATCAAAATGGTA 57.568 29.630 9.99 0.00 0.00 3.25
1978 2099 6.264970 TGCGAATGAAAATGGGATGATATCAA 59.735 34.615 9.99 0.00 0.00 2.57
1991 2112 5.107375 GCTCACAAAACATGCGAATGAAAAT 60.107 36.000 11.32 0.00 0.00 1.82
1994 2115 3.004629 AGCTCACAAAACATGCGAATGAA 59.995 39.130 11.32 0.00 0.00 2.57
2004 2125 5.526111 GGTGTTAGAGTAAGCTCACAAAACA 59.474 40.000 0.00 0.00 44.00 2.83
2035 2156 6.269315 TCAAACAGCGAAAATAGAAGCAAAA 58.731 32.000 0.00 0.00 0.00 2.44
2036 2157 5.826586 TCAAACAGCGAAAATAGAAGCAAA 58.173 33.333 0.00 0.00 0.00 3.68
2039 2160 6.934561 AAATCAAACAGCGAAAATAGAAGC 57.065 33.333 0.00 0.00 0.00 3.86
2084 2207 2.166254 GGTGGCATGTTATGTTGGGAAG 59.834 50.000 0.00 0.00 0.00 3.46
2104 2227 3.181476 CCCTATGGAAATTTTGGCGAAGG 60.181 47.826 0.00 0.00 0.00 3.46
2892 3015 6.139679 AGAAAGAAACCCAAGATATCACCA 57.860 37.500 5.32 0.00 0.00 4.17
2978 3101 8.906238 TCCTACAAGTAAAACTATTAGGACCT 57.094 34.615 0.00 0.00 37.14 3.85
3054 3177 1.536766 CGAGTTCAATTTCCTGCTGCA 59.463 47.619 0.88 0.88 0.00 4.41
3335 3458 9.550406 CATTGATATCTAAATTTTGGCCAACAT 57.450 29.630 20.35 15.50 0.00 2.71
3408 3531 6.328672 AGCAGGTTATAAGATCATCCAGTCTT 59.671 38.462 0.00 0.00 38.22 3.01
3468 3591 1.029947 CGCCCAGAAAATTACGCCCT 61.030 55.000 0.00 0.00 0.00 5.19
3733 3861 5.972935 TCTGTCCGTAAAAAGATCATGCTA 58.027 37.500 0.00 0.00 0.00 3.49
3742 3870 3.006537 TCACTCCCTCTGTCCGTAAAAAG 59.993 47.826 0.00 0.00 0.00 2.27
3887 4373 4.339814 AGAAGCCAGAGAAGTTAGTATCCG 59.660 45.833 0.00 0.00 0.00 4.18
4127 4615 2.158841 CGTACACCATGCAACAGGTAAC 59.841 50.000 8.32 8.88 36.07 2.50
4148 4636 5.692204 CCAAGGTATACATCATCACGAGAAC 59.308 44.000 5.01 0.00 0.00 3.01
4179 4667 4.393834 TGTCTTCGGAATTTGGACATGAA 58.606 39.130 0.00 0.00 32.91 2.57
4330 4834 1.637553 AGTGATGCATCCCTTGTTCCT 59.362 47.619 23.67 4.23 0.00 3.36
4331 4835 2.019984 GAGTGATGCATCCCTTGTTCC 58.980 52.381 23.67 1.74 0.00 3.62
4332 4836 2.996631 AGAGTGATGCATCCCTTGTTC 58.003 47.619 23.67 11.50 0.00 3.18
4333 4837 3.683847 GCTAGAGTGATGCATCCCTTGTT 60.684 47.826 23.67 9.98 0.00 2.83
4334 4838 2.158842 GCTAGAGTGATGCATCCCTTGT 60.159 50.000 23.67 11.47 0.00 3.16
4335 4839 2.158856 TGCTAGAGTGATGCATCCCTTG 60.159 50.000 23.67 17.55 0.00 3.61
4336 4840 2.121948 TGCTAGAGTGATGCATCCCTT 58.878 47.619 23.67 9.18 0.00 3.95
4337 4841 1.798626 TGCTAGAGTGATGCATCCCT 58.201 50.000 23.67 18.07 0.00 4.20
4338 4842 2.627515 TTGCTAGAGTGATGCATCCC 57.372 50.000 23.67 12.96 36.55 3.85
4339 4843 7.479897 CATATATTGCTAGAGTGATGCATCC 57.520 40.000 23.67 14.63 36.55 3.51
4409 4913 5.118510 CACCGCCTATGAATTCAAACAAAAC 59.881 40.000 13.09 0.00 0.00 2.43
4440 4944 2.551459 CTCAACCTTGCTTCTGGTTCTG 59.449 50.000 0.00 0.00 43.88 3.02
4514 5018 1.838112 TGGCCATGTCCATGTTCTTC 58.162 50.000 0.00 0.00 37.11 2.87
4876 5381 3.380004 TCACCATTCCATTATTGCCGTTC 59.620 43.478 0.00 0.00 0.00 3.95
4994 5499 8.043113 AGACATCAGAGTTGTTATTCATTAGCA 58.957 33.333 0.00 0.00 0.00 3.49
5022 5527 2.161609 CACCGCCCAGAATAGAAAACAC 59.838 50.000 0.00 0.00 0.00 3.32
5048 5554 3.770933 AGCAAATTACCAACCAGATGCAT 59.229 39.130 0.00 0.00 35.11 3.96
5061 5567 9.262358 CTCTACCTACCATCTTAAGCAAATTAC 57.738 37.037 0.00 0.00 0.00 1.89
5091 5597 8.716674 ACATCAGATATGCCCATTTCTATTTT 57.283 30.769 1.76 0.00 29.87 1.82
5224 5730 1.202818 ACCTTCAGCACCTTGTTCCTC 60.203 52.381 0.00 0.00 0.00 3.71
5263 5769 2.754552 GCTATTTCACATGACCAAGGCA 59.245 45.455 0.00 0.00 0.00 4.75
5336 5852 0.107703 TCTTGTGGTGGATCGGATGC 60.108 55.000 2.14 2.14 0.00 3.91
5458 5978 4.343814 AGGATCCTAGAGAGCTAAAGCAAC 59.656 45.833 14.27 0.00 45.16 4.17
5468 5990 4.993705 ACTGGACTAGGATCCTAGAGAG 57.006 50.000 42.62 33.79 46.56 3.20
5478 6000 4.401519 CGACTGGAAATAACTGGACTAGGA 59.598 45.833 0.00 0.00 0.00 2.94
5485 6007 2.009774 CAGCCGACTGGAAATAACTGG 58.990 52.381 0.00 0.00 40.48 4.00
5519 6043 7.801716 AGCAGAACTTGAACACAAAGTAATA 57.198 32.000 0.00 0.00 0.00 0.98
5661 7123 1.217916 TCCAGGTTTCAGAACACCCA 58.782 50.000 9.62 0.00 37.51 4.51
5728 7190 2.884639 CCACCAAACGAACTGAATCCTT 59.115 45.455 0.00 0.00 0.00 3.36
5749 7211 0.676782 ATAAACACGCAGGCTCACCC 60.677 55.000 0.00 0.00 36.11 4.61
5875 7337 7.657761 GGGTGTTCCATTCATCTACTTATACAG 59.342 40.741 0.00 0.00 35.00 2.74
5876 7338 7.506114 GGGTGTTCCATTCATCTACTTATACA 58.494 38.462 0.00 0.00 35.00 2.29
5877 7339 6.645415 CGGGTGTTCCATTCATCTACTTATAC 59.355 42.308 0.00 0.00 34.36 1.47
5878 7340 6.551975 TCGGGTGTTCCATTCATCTACTTATA 59.448 38.462 0.00 0.00 34.36 0.98
5879 7341 5.365605 TCGGGTGTTCCATTCATCTACTTAT 59.634 40.000 0.00 0.00 34.36 1.73
5880 7342 4.712829 TCGGGTGTTCCATTCATCTACTTA 59.287 41.667 0.00 0.00 34.36 2.24
5913 7375 1.632422 GTGCCATATTGTGCAAGTGC 58.368 50.000 0.00 0.00 39.57 4.40
6010 7472 1.076332 CCAAGCTCGTTTACCTTCCG 58.924 55.000 0.00 0.00 0.00 4.30
6021 7483 1.002468 CTCAAACACCAACCAAGCTCG 60.002 52.381 0.00 0.00 0.00 5.03
6031 7493 3.072330 TCATACTGCTTCCTCAAACACCA 59.928 43.478 0.00 0.00 0.00 4.17
6032 7494 3.674997 TCATACTGCTTCCTCAAACACC 58.325 45.455 0.00 0.00 0.00 4.16
6045 7507 6.590292 TGTTAGCTTTCAGTTACTCATACTGC 59.410 38.462 0.00 0.00 42.12 4.40
6101 7563 8.208903 AGTGGTTAATCTTGTACAGTAAGTTGT 58.791 33.333 0.00 0.00 35.09 3.32
6102 7564 8.603242 AGTGGTTAATCTTGTACAGTAAGTTG 57.397 34.615 0.00 0.00 0.00 3.16
6124 7590 6.578020 TTTTCGCCGTTACAGATAATAGTG 57.422 37.500 0.00 0.00 0.00 2.74
6134 7600 2.726373 CGCATCATTTTTCGCCGTTACA 60.726 45.455 0.00 0.00 0.00 2.41
6136 7602 1.792273 GCGCATCATTTTTCGCCGTTA 60.792 47.619 0.30 0.00 41.53 3.18
6142 7608 1.141591 GCTGGGCGCATCATTTTTCG 61.142 55.000 10.83 0.00 38.92 3.46
6188 7654 7.208777 TCAATAGTGTTTGATGCAACAATGTT 58.791 30.769 10.44 1.71 30.82 2.71
6201 7667 9.569167 TCTTACTCGACTAATCAATAGTGTTTG 57.431 33.333 0.00 0.00 45.00 2.93
6209 7675 7.997482 TGCTAGTTCTTACTCGACTAATCAAT 58.003 34.615 0.00 0.00 35.78 2.57
6211 7677 6.997239 TGCTAGTTCTTACTCGACTAATCA 57.003 37.500 0.00 0.00 35.78 2.57
6212 7678 8.585436 GTTTTGCTAGTTCTTACTCGACTAATC 58.415 37.037 0.00 0.00 35.78 1.75
6213 7679 7.544915 GGTTTTGCTAGTTCTTACTCGACTAAT 59.455 37.037 0.00 0.00 35.78 1.73
6214 7680 6.865205 GGTTTTGCTAGTTCTTACTCGACTAA 59.135 38.462 0.00 0.00 35.78 2.24
6215 7681 6.385033 GGTTTTGCTAGTTCTTACTCGACTA 58.615 40.000 0.00 0.00 35.78 2.59
6216 7682 5.228665 GGTTTTGCTAGTTCTTACTCGACT 58.771 41.667 0.00 0.00 35.78 4.18
6218 7684 4.232221 CGGTTTTGCTAGTTCTTACTCGA 58.768 43.478 0.00 0.00 35.78 4.04
6219 7685 3.985925 ACGGTTTTGCTAGTTCTTACTCG 59.014 43.478 0.00 0.00 35.78 4.18
6220 7686 4.089636 CGACGGTTTTGCTAGTTCTTACTC 59.910 45.833 0.00 0.00 35.78 2.59
6221 7687 3.985925 CGACGGTTTTGCTAGTTCTTACT 59.014 43.478 0.00 0.00 38.44 2.24
6222 7688 3.983344 TCGACGGTTTTGCTAGTTCTTAC 59.017 43.478 0.00 0.00 0.00 2.34
6223 7689 4.241590 TCGACGGTTTTGCTAGTTCTTA 57.758 40.909 0.00 0.00 0.00 2.10
6224 7690 3.102052 TCGACGGTTTTGCTAGTTCTT 57.898 42.857 0.00 0.00 0.00 2.52
6225 7691 2.806608 TCGACGGTTTTGCTAGTTCT 57.193 45.000 0.00 0.00 0.00 3.01
6226 7692 2.027688 CGATCGACGGTTTTGCTAGTTC 59.972 50.000 10.26 0.00 38.46 3.01
6228 7694 1.625616 CGATCGACGGTTTTGCTAGT 58.374 50.000 10.26 0.00 38.46 2.57
6241 8161 3.669824 GCAGTGAGTTAGAACACGATCGA 60.670 47.826 24.34 0.00 41.22 3.59
6242 8162 2.594654 GCAGTGAGTTAGAACACGATCG 59.405 50.000 14.88 14.88 41.22 3.69
6243 8163 3.575630 TGCAGTGAGTTAGAACACGATC 58.424 45.455 0.00 0.00 41.22 3.69
6266 8186 3.676291 AATCAAAAATCACCAACCCGG 57.324 42.857 0.00 0.00 42.50 5.73
6267 8187 7.665561 ATTAAAATCAAAAATCACCAACCCG 57.334 32.000 0.00 0.00 0.00 5.28
6281 8202 3.438781 ACTGCGGCGAGAATTAAAATCAA 59.561 39.130 12.98 0.00 0.00 2.57
6287 8208 2.087501 TTGACTGCGGCGAGAATTAA 57.912 45.000 12.98 0.00 0.00 1.40
6298 8219 7.576750 TCTAGTTTAATAGTGTTTGACTGCG 57.423 36.000 0.00 0.00 35.96 5.18
6322 8243 9.692325 ACAAGAATTTTAGATTAGAGCTGGATT 57.308 29.630 0.00 0.00 0.00 3.01
6323 8244 9.336171 GACAAGAATTTTAGATTAGAGCTGGAT 57.664 33.333 0.00 0.00 0.00 3.41
6324 8245 8.543774 AGACAAGAATTTTAGATTAGAGCTGGA 58.456 33.333 0.00 0.00 0.00 3.86
6325 8246 8.610896 CAGACAAGAATTTTAGATTAGAGCTGG 58.389 37.037 0.00 0.00 0.00 4.85
6326 8247 9.376075 TCAGACAAGAATTTTAGATTAGAGCTG 57.624 33.333 0.00 0.00 0.00 4.24
6327 8248 9.950496 TTCAGACAAGAATTTTAGATTAGAGCT 57.050 29.630 0.00 0.00 0.00 4.09
6349 8559 7.137490 TCTTGTTTGCATCTCACTAATTCAG 57.863 36.000 0.00 0.00 0.00 3.02
6354 8564 5.997129 TCACATCTTGTTTGCATCTCACTAA 59.003 36.000 0.00 0.00 0.00 2.24
6363 8573 4.754618 AGTCGTATTCACATCTTGTTTGCA 59.245 37.500 0.00 0.00 0.00 4.08
6400 8627 1.522258 CAAATGGCAGCGTGTTCAAAC 59.478 47.619 0.00 0.00 0.00 2.93
6405 8644 1.300080 GCACAAATGGCAGCGTGTT 60.300 52.632 13.22 0.00 0.00 3.32
6406 8645 2.336088 GCACAAATGGCAGCGTGT 59.664 55.556 13.22 5.38 0.00 4.49
6407 8646 2.017783 GTGCACAAATGGCAGCGTG 61.018 57.895 13.17 8.81 42.85 5.34
6408 8647 2.336088 GTGCACAAATGGCAGCGT 59.664 55.556 13.17 0.00 42.85 5.07
6411 8650 1.005867 GGTGGTGCACAAATGGCAG 60.006 57.895 20.43 0.00 42.85 4.85
6412 8651 2.506061 GGGTGGTGCACAAATGGCA 61.506 57.895 20.43 2.82 39.32 4.92
6413 8652 1.829523 ATGGGTGGTGCACAAATGGC 61.830 55.000 20.43 0.00 35.86 4.40
6446 8699 1.268032 GCGATGTCAAAAGGTATGGCG 60.268 52.381 0.00 0.00 0.00 5.69
6466 8719 3.617263 GTGCGGATAAAGTCTTGTACTGG 59.383 47.826 0.00 0.00 38.88 4.00
6524 8779 4.504916 CCTCTCCTGCAGGCGACG 62.505 72.222 28.91 17.07 34.44 5.12
6542 8797 4.169068 TGGATTCTCCTAGCTAGTTCCTCT 59.831 45.833 19.31 0.00 37.46 3.69
6543 8798 4.279922 GTGGATTCTCCTAGCTAGTTCCTC 59.720 50.000 19.31 12.80 37.46 3.71
6544 8799 4.219919 GTGGATTCTCCTAGCTAGTTCCT 58.780 47.826 19.31 0.26 37.46 3.36
6545 8800 3.004944 CGTGGATTCTCCTAGCTAGTTCC 59.995 52.174 19.31 15.56 37.46 3.62
6546 8801 3.004944 CCGTGGATTCTCCTAGCTAGTTC 59.995 52.174 19.31 7.88 37.46 3.01
6547 8802 2.959707 CCGTGGATTCTCCTAGCTAGTT 59.040 50.000 19.31 0.00 37.46 2.24
6548 8803 2.175069 TCCGTGGATTCTCCTAGCTAGT 59.825 50.000 19.31 0.00 37.46 2.57
6549 8804 2.554893 GTCCGTGGATTCTCCTAGCTAG 59.445 54.545 14.20 14.20 37.46 3.42
6550 8805 2.584236 GTCCGTGGATTCTCCTAGCTA 58.416 52.381 0.00 0.00 37.46 3.32
6551 8806 1.404843 GTCCGTGGATTCTCCTAGCT 58.595 55.000 0.00 0.00 37.46 3.32
6552 8807 0.389757 GGTCCGTGGATTCTCCTAGC 59.610 60.000 0.00 0.00 37.46 3.42
6553 8808 1.683917 CTGGTCCGTGGATTCTCCTAG 59.316 57.143 0.00 0.00 37.46 3.02
6554 8809 1.688311 CCTGGTCCGTGGATTCTCCTA 60.688 57.143 0.00 0.00 37.46 2.94
6555 8810 0.978146 CCTGGTCCGTGGATTCTCCT 60.978 60.000 0.00 0.00 37.46 3.69
6556 8811 0.976073 TCCTGGTCCGTGGATTCTCC 60.976 60.000 0.00 0.00 36.96 3.71
6557 8812 0.461961 CTCCTGGTCCGTGGATTCTC 59.538 60.000 4.15 0.00 0.00 2.87
6558 8813 0.041238 TCTCCTGGTCCGTGGATTCT 59.959 55.000 4.15 0.00 0.00 2.40
6559 8814 1.123928 ATCTCCTGGTCCGTGGATTC 58.876 55.000 4.15 0.00 0.00 2.52
6567 8822 3.515901 AGTCACTACAAATCTCCTGGTCC 59.484 47.826 0.00 0.00 0.00 4.46
6582 8837 4.546570 CAGATCACACGTTTGAGTCACTA 58.453 43.478 10.56 0.00 0.00 2.74
6589 8844 1.565156 GCGGCAGATCACACGTTTGA 61.565 55.000 6.89 6.89 0.00 2.69
6643 8904 1.148310 CTTCGCCGAGCAGAAAAAGA 58.852 50.000 0.00 0.00 0.00 2.52
6644 8905 1.148310 TCTTCGCCGAGCAGAAAAAG 58.852 50.000 0.00 0.00 0.00 2.27
6645 8906 1.531149 CTTCTTCGCCGAGCAGAAAAA 59.469 47.619 3.16 0.00 0.00 1.94
6653 8914 1.518133 CCTGCTCTTCTTCGCCGAG 60.518 63.158 0.00 0.00 0.00 4.63
6655 8916 1.807573 GTCCTGCTCTTCTTCGCCG 60.808 63.158 0.00 0.00 0.00 6.46
6725 9005 9.204570 GCTGACAAAAGGATGTATAATACGTAT 57.795 33.333 1.14 1.14 32.57 3.06
6728 9008 6.419710 TCGCTGACAAAAGGATGTATAATACG 59.580 38.462 0.00 0.00 32.57 3.06
6729 9009 7.438459 ACTCGCTGACAAAAGGATGTATAATAC 59.562 37.037 0.00 0.00 32.57 1.89
6730 9010 7.497595 ACTCGCTGACAAAAGGATGTATAATA 58.502 34.615 0.00 0.00 32.57 0.98
6731 9011 6.349300 ACTCGCTGACAAAAGGATGTATAAT 58.651 36.000 0.00 0.00 32.57 1.28
6732 9012 5.730550 ACTCGCTGACAAAAGGATGTATAA 58.269 37.500 0.00 0.00 32.57 0.98
6733 9013 5.127194 AGACTCGCTGACAAAAGGATGTATA 59.873 40.000 0.00 0.00 32.57 1.47
6736 9016 2.037772 AGACTCGCTGACAAAAGGATGT 59.962 45.455 0.00 0.00 35.90 3.06
6738 9018 4.744795 ATAGACTCGCTGACAAAAGGAT 57.255 40.909 0.00 0.00 0.00 3.24
6739 9019 4.537135 AATAGACTCGCTGACAAAAGGA 57.463 40.909 0.00 0.00 0.00 3.36
6740 9020 5.411781 ACTAATAGACTCGCTGACAAAAGG 58.588 41.667 0.00 0.00 0.00 3.11
6741 9021 6.586463 TCAACTAATAGACTCGCTGACAAAAG 59.414 38.462 0.00 0.00 0.00 2.27
6742 9022 6.452242 TCAACTAATAGACTCGCTGACAAAA 58.548 36.000 0.00 0.00 0.00 2.44
6747 9027 4.023963 CGGATCAACTAATAGACTCGCTGA 60.024 45.833 0.00 0.00 0.00 4.26
6751 9031 4.491234 AGCGGATCAACTAATAGACTCG 57.509 45.455 0.00 0.00 0.00 4.18
6756 9036 8.812147 TGTAACATTAGCGGATCAACTAATAG 57.188 34.615 15.33 12.84 37.05 1.73
6780 9060 4.712191 GATCTCACAATCAAGATCGCTG 57.288 45.455 0.00 0.00 38.77 5.18
6784 9064 6.817641 AGTCAACTGATCTCACAATCAAGATC 59.182 38.462 5.60 5.60 45.33 2.75
6785 9065 6.709281 AGTCAACTGATCTCACAATCAAGAT 58.291 36.000 0.00 0.00 35.32 2.40
6786 9066 6.106648 AGTCAACTGATCTCACAATCAAGA 57.893 37.500 0.00 0.00 35.32 3.02
6787 9067 7.095910 ACTAGTCAACTGATCTCACAATCAAG 58.904 38.462 0.00 0.00 35.32 3.02
6788 9068 6.997655 ACTAGTCAACTGATCTCACAATCAA 58.002 36.000 0.00 0.00 35.32 2.57
6789 9069 6.435591 AGACTAGTCAACTGATCTCACAATCA 59.564 38.462 24.44 0.00 34.55 2.57
6790 9070 6.751425 CAGACTAGTCAACTGATCTCACAATC 59.249 42.308 24.44 0.00 34.07 2.67
6791 9071 6.210385 ACAGACTAGTCAACTGATCTCACAAT 59.790 38.462 24.44 0.00 35.85 2.71
6792 9072 5.536538 ACAGACTAGTCAACTGATCTCACAA 59.463 40.000 24.44 0.00 35.85 3.33
6793 9073 5.073428 ACAGACTAGTCAACTGATCTCACA 58.927 41.667 24.44 0.00 35.85 3.58
6794 9074 5.637006 ACAGACTAGTCAACTGATCTCAC 57.363 43.478 24.44 0.00 35.85 3.51
6795 9075 6.715264 TGTTACAGACTAGTCAACTGATCTCA 59.285 38.462 24.44 10.51 35.85 3.27
6796 9076 7.147143 TGTTACAGACTAGTCAACTGATCTC 57.853 40.000 24.44 8.53 35.85 2.75
6797 9077 7.710676 ATGTTACAGACTAGTCAACTGATCT 57.289 36.000 24.44 0.00 35.85 2.75
6798 9078 7.489757 GGAATGTTACAGACTAGTCAACTGATC 59.510 40.741 24.44 16.34 35.85 2.92
6799 9079 7.039011 TGGAATGTTACAGACTAGTCAACTGAT 60.039 37.037 24.44 8.23 35.85 2.90
6800 9080 6.266786 TGGAATGTTACAGACTAGTCAACTGA 59.733 38.462 24.44 6.40 35.85 3.41
6801 9081 6.455647 TGGAATGTTACAGACTAGTCAACTG 58.544 40.000 24.44 16.01 37.62 3.16
6802 9082 6.665992 TGGAATGTTACAGACTAGTCAACT 57.334 37.500 24.44 8.68 0.00 3.16
6803 9083 7.724305 TTTGGAATGTTACAGACTAGTCAAC 57.276 36.000 24.44 18.88 0.00 3.18
6804 9084 8.918202 AATTTGGAATGTTACAGACTAGTCAA 57.082 30.769 24.44 7.80 0.00 3.18
6805 9085 8.918202 AAATTTGGAATGTTACAGACTAGTCA 57.082 30.769 24.44 3.85 0.00 3.41
6806 9086 9.612620 CAAAATTTGGAATGTTACAGACTAGTC 57.387 33.333 15.41 15.41 0.00 2.59
6828 9108 9.405587 CGTAGAATTTCTAAAATCAAGCCAAAA 57.594 29.630 7.70 0.00 29.58 2.44
6829 9109 7.540745 GCGTAGAATTTCTAAAATCAAGCCAAA 59.459 33.333 7.70 0.00 29.58 3.28
6830 9110 7.027161 GCGTAGAATTTCTAAAATCAAGCCAA 58.973 34.615 7.70 0.00 29.58 4.52
6831 9111 6.150307 TGCGTAGAATTTCTAAAATCAAGCCA 59.850 34.615 7.70 0.00 29.58 4.75
6832 9112 6.551736 TGCGTAGAATTTCTAAAATCAAGCC 58.448 36.000 7.70 0.00 29.58 4.35
6833 9113 7.750903 AGTTGCGTAGAATTTCTAAAATCAAGC 59.249 33.333 7.70 2.29 29.58 4.01
6834 9114 9.267096 GAGTTGCGTAGAATTTCTAAAATCAAG 57.733 33.333 7.70 0.00 29.58 3.02
6835 9115 8.779303 TGAGTTGCGTAGAATTTCTAAAATCAA 58.221 29.630 13.18 9.89 29.58 2.57
6836 9116 8.317891 TGAGTTGCGTAGAATTTCTAAAATCA 57.682 30.769 7.70 10.43 29.58 2.57
6837 9117 9.267096 CTTGAGTTGCGTAGAATTTCTAAAATC 57.733 33.333 7.70 8.30 29.58 2.17
6838 9118 8.237267 CCTTGAGTTGCGTAGAATTTCTAAAAT 58.763 33.333 7.70 0.00 29.58 1.82
6839 9119 7.442969 TCCTTGAGTTGCGTAGAATTTCTAAAA 59.557 33.333 7.70 1.50 29.58 1.52
6840 9120 6.932400 TCCTTGAGTTGCGTAGAATTTCTAAA 59.068 34.615 7.70 0.00 29.58 1.85
6841 9121 6.367969 GTCCTTGAGTTGCGTAGAATTTCTAA 59.632 38.462 7.70 0.00 29.58 2.10
6842 9122 5.867716 GTCCTTGAGTTGCGTAGAATTTCTA 59.132 40.000 1.90 1.90 0.00 2.10
6843 9123 4.691216 GTCCTTGAGTTGCGTAGAATTTCT 59.309 41.667 4.03 4.03 0.00 2.52
6844 9124 4.142881 GGTCCTTGAGTTGCGTAGAATTTC 60.143 45.833 0.00 0.00 0.00 2.17
6845 9125 3.751698 GGTCCTTGAGTTGCGTAGAATTT 59.248 43.478 0.00 0.00 0.00 1.82
6846 9126 3.335579 GGTCCTTGAGTTGCGTAGAATT 58.664 45.455 0.00 0.00 0.00 2.17
6847 9127 2.354805 GGGTCCTTGAGTTGCGTAGAAT 60.355 50.000 0.00 0.00 0.00 2.40
6848 9128 1.001633 GGGTCCTTGAGTTGCGTAGAA 59.998 52.381 0.00 0.00 0.00 2.10
6849 9129 0.606604 GGGTCCTTGAGTTGCGTAGA 59.393 55.000 0.00 0.00 0.00 2.59
6850 9130 0.320374 TGGGTCCTTGAGTTGCGTAG 59.680 55.000 0.00 0.00 0.00 3.51
6851 9131 0.034337 GTGGGTCCTTGAGTTGCGTA 59.966 55.000 0.00 0.00 0.00 4.42
6852 9132 1.227853 GTGGGTCCTTGAGTTGCGT 60.228 57.895 0.00 0.00 0.00 5.24
6853 9133 2.317609 CGTGGGTCCTTGAGTTGCG 61.318 63.158 0.00 0.00 0.00 4.85
6854 9134 1.966451 CCGTGGGTCCTTGAGTTGC 60.966 63.158 0.00 0.00 0.00 4.17
6855 9135 0.320771 CTCCGTGGGTCCTTGAGTTG 60.321 60.000 0.00 0.00 0.00 3.16
6856 9136 0.471211 TCTCCGTGGGTCCTTGAGTT 60.471 55.000 0.00 0.00 0.00 3.01
6857 9137 0.900647 CTCTCCGTGGGTCCTTGAGT 60.901 60.000 0.00 0.00 0.00 3.41
6858 9138 0.612174 TCTCTCCGTGGGTCCTTGAG 60.612 60.000 0.00 0.00 0.00 3.02
6859 9139 0.612174 CTCTCTCCGTGGGTCCTTGA 60.612 60.000 0.00 0.00 0.00 3.02
6860 9140 0.900647 ACTCTCTCCGTGGGTCCTTG 60.901 60.000 0.00 0.00 0.00 3.61
6861 9141 0.178929 AACTCTCTCCGTGGGTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
6862 9142 0.900647 CAACTCTCTCCGTGGGTCCT 60.901 60.000 0.00 0.00 0.00 3.85
6863 9143 1.592223 CAACTCTCTCCGTGGGTCC 59.408 63.158 0.00 0.00 0.00 4.46
6864 9144 1.592223 CCAACTCTCTCCGTGGGTC 59.408 63.158 0.00 0.00 0.00 4.46
6865 9145 1.913762 CCCAACTCTCTCCGTGGGT 60.914 63.158 0.00 0.00 32.22 4.51
6866 9146 2.660064 CCCCAACTCTCTCCGTGGG 61.660 68.421 0.30 0.30 36.40 4.61
6867 9147 0.978146 ATCCCCAACTCTCTCCGTGG 60.978 60.000 0.00 0.00 0.00 4.94
6868 9148 0.905357 AATCCCCAACTCTCTCCGTG 59.095 55.000 0.00 0.00 0.00 4.94
6869 9149 1.555533 GAAATCCCCAACTCTCTCCGT 59.444 52.381 0.00 0.00 0.00 4.69
6870 9150 1.555075 TGAAATCCCCAACTCTCTCCG 59.445 52.381 0.00 0.00 0.00 4.63
6871 9151 3.941704 ATGAAATCCCCAACTCTCTCC 57.058 47.619 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.