Multiple sequence alignment - TraesCS5D01G232700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G232700 chr5D 100.000 3127 0 0 1 3127 339967158 339970284 0.000000e+00 5775.0
1 TraesCS5D01G232700 chr5A 91.401 2256 139 24 99 2310 441111090 441113334 0.000000e+00 3040.0
2 TraesCS5D01G232700 chr5A 94.274 489 16 7 2642 3127 441113514 441113993 0.000000e+00 737.0
3 TraesCS5D01G232700 chr5A 90.385 104 10 0 1 104 441110456 441110559 1.510000e-28 137.0
4 TraesCS5D01G232700 chr5A 94.643 56 2 1 2304 2359 441113463 441113517 5.560000e-13 86.1
5 TraesCS5D01G232700 chr5B 91.962 2090 126 27 48 2124 399021762 399023822 0.000000e+00 2891.0
6 TraesCS5D01G232700 chr5B 91.598 488 26 4 2502 2987 399024548 399025022 0.000000e+00 660.0
7 TraesCS5D01G232700 chr5B 92.929 198 12 1 2296 2493 399023856 399024051 1.420000e-73 287.0
8 TraesCS5D01G232700 chr5B 95.031 161 7 1 2957 3116 399025028 399025188 5.180000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G232700 chr5D 339967158 339970284 3126 False 5775.000 5775 100.00000 1 3127 1 chr5D.!!$F1 3126
1 TraesCS5D01G232700 chr5A 441110456 441113993 3537 False 1000.025 3040 92.67575 1 3127 4 chr5A.!!$F1 3126
2 TraesCS5D01G232700 chr5B 399021762 399025188 3426 False 1022.500 2891 92.88000 48 3116 4 chr5B.!!$F1 3068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.385974 GTCTCATGTTGCAACGCACC 60.386 55.0 23.79 6.57 38.71 5.01 F
1461 2035 0.458889 ACAATGCATTGCCATCACGC 60.459 50.0 33.94 0.00 41.38 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 2070 0.517316 GGAAGCACCGTTCATGTCAC 59.483 55.0 0.0 0.0 0.0 3.67 R
2588 3824 0.976641 TCGCTGATGGGAACTTGTCT 59.023 50.0 0.0 0.0 32.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.385974 GTCTCATGTTGCAACGCACC 60.386 55.000 23.79 6.57 38.71 5.01
33 34 1.440850 CTCATGTTGCAACGCACCG 60.441 57.895 23.79 10.51 38.71 4.94
39 40 4.927782 TGCAACGCACCGGCTCTT 62.928 61.111 0.00 0.00 38.10 2.85
40 41 4.090057 GCAACGCACCGGCTCTTC 62.090 66.667 0.00 0.00 38.10 2.87
43 44 3.165160 AACGCACCGGCTCTTCTGT 62.165 57.895 0.00 0.00 38.10 3.41
46 47 1.352156 CGCACCGGCTCTTCTGTTAC 61.352 60.000 0.00 0.00 38.10 2.50
120 657 8.883302 AGTTACAAGTAACATAAACTTCCCCTA 58.117 33.333 21.26 0.00 45.79 3.53
124 661 9.423964 ACAAGTAACATAAACTTCCCCTAAAAA 57.576 29.630 0.00 0.00 34.99 1.94
202 742 5.831997 ACGGGAAAATGTGAGAAAGAAAAG 58.168 37.500 0.00 0.00 0.00 2.27
242 782 1.522355 CCCATCGATGCGTGCTTCT 60.522 57.895 20.25 0.00 0.00 2.85
304 848 6.655425 GGATTTACCATAGCATCTACTTTCCC 59.345 42.308 0.00 0.00 38.79 3.97
328 872 8.520351 CCCTTTTCTTTTTGAAATCTACCGTAT 58.480 33.333 0.00 0.00 43.34 3.06
368 912 4.636206 CACATGGGCTCTAGTTTTAGTTCC 59.364 45.833 0.00 0.00 0.00 3.62
381 925 6.610830 AGTTTTAGTTCCCAAATCTTCTCCA 58.389 36.000 0.00 0.00 0.00 3.86
704 1269 2.220615 TATGACGTGGTCACCCGCAG 62.221 60.000 0.00 0.00 45.65 5.18
726 1291 1.024046 TGCGTGTGTGTGCAGTTCTT 61.024 50.000 0.00 0.00 35.90 2.52
728 1293 1.332904 GCGTGTGTGTGCAGTTCTTAC 60.333 52.381 0.00 0.00 0.00 2.34
737 1305 5.473162 TGTGTGCAGTTCTTACATATTGCTT 59.527 36.000 0.00 0.00 33.00 3.91
744 1312 6.092122 CAGTTCTTACATATTGCTTTCGGTCA 59.908 38.462 0.00 0.00 0.00 4.02
752 1320 2.386661 TGCTTTCGGTCATCCTCTTC 57.613 50.000 0.00 0.00 0.00 2.87
801 1369 1.182667 CGTGAGGGGATGACACACTA 58.817 55.000 0.00 0.00 34.69 2.74
848 1417 1.606994 CGTCGGTCAAGTCAATGGGAA 60.607 52.381 0.00 0.00 0.00 3.97
1206 1780 4.719369 GTGCGCGAGGAGAACCGT 62.719 66.667 12.10 0.00 41.83 4.83
1263 1837 4.803426 CCCGACCTGCGTGCTCTC 62.803 72.222 0.00 0.00 38.67 3.20
1294 1868 4.063967 CGTCAGCCGTAGCCACCA 62.064 66.667 0.00 0.00 41.25 4.17
1422 1996 2.737376 GACACCGACGCCAACCTC 60.737 66.667 0.00 0.00 0.00 3.85
1440 2014 1.530323 TCGTGAGTCGAACATCCTGA 58.470 50.000 0.00 0.00 45.98 3.86
1446 2020 3.511540 TGAGTCGAACATCCTGAGACAAT 59.488 43.478 0.00 0.00 34.56 2.71
1453 2027 2.426024 ACATCCTGAGACAATGCATTGC 59.574 45.455 33.94 26.14 41.38 3.56
1457 2031 2.223735 CCTGAGACAATGCATTGCCATC 60.224 50.000 33.94 27.48 41.38 3.51
1458 2032 2.425668 CTGAGACAATGCATTGCCATCA 59.574 45.455 33.94 29.77 41.38 3.07
1460 2034 1.133598 AGACAATGCATTGCCATCACG 59.866 47.619 33.94 12.70 41.38 4.35
1461 2035 0.458889 ACAATGCATTGCCATCACGC 60.459 50.000 33.94 0.00 41.38 5.34
1483 2057 2.785105 CGCACGCCGTGTAGCTTAC 61.785 63.158 19.57 0.00 35.75 2.34
1496 2070 2.240500 GCTTACCTCGAGCCATGCG 61.241 63.158 6.99 0.00 34.06 4.73
1514 2088 0.163788 CGTGACATGAACGGTGCTTC 59.836 55.000 15.01 0.00 37.39 3.86
1589 2163 4.681978 GGGCAGAAGGTGACGCGT 62.682 66.667 13.85 13.85 33.17 6.01
1659 2233 1.675116 GCCCCGTGAAGAAGAAGGTAC 60.675 57.143 0.00 0.00 0.00 3.34
1661 2235 1.900486 CCCGTGAAGAAGAAGGTACCT 59.100 52.381 9.21 9.21 0.00 3.08
1685 2263 8.642432 CCTATGTGTTCTAAATAGTCATCTCCA 58.358 37.037 0.00 0.00 0.00 3.86
1706 2284 3.904339 CAGTTCTACCCCATGCTACCTAT 59.096 47.826 0.00 0.00 0.00 2.57
1749 2359 6.958193 CGTACTCTGAGATTTTGCTGAATTTC 59.042 38.462 12.44 0.00 0.00 2.17
1914 2524 1.968050 CTCCATTAACCCGTCCGGCT 61.968 60.000 0.00 0.00 33.26 5.52
1916 2526 2.124860 ATTAACCCGTCCGGCTGC 60.125 61.111 0.00 0.00 33.26 5.25
2076 2686 5.507482 GCAGATTTCATGCATGCTCTAACAT 60.507 40.000 22.25 2.75 43.31 2.71
2151 2761 3.268334 TGCCCAAGTATTTAGGTGTGGAT 59.732 43.478 0.00 0.00 0.00 3.41
2194 2804 7.397476 TGGTGGTTTCTTATGGTATAATTTGCA 59.603 33.333 0.00 0.00 0.00 4.08
2263 2873 1.375268 GCACAGTGGAGTCAGGAGC 60.375 63.158 1.84 0.00 0.00 4.70
2264 2874 2.052779 CACAGTGGAGTCAGGAGCA 58.947 57.895 0.00 0.00 0.00 4.26
2279 2891 2.959071 GCAGATCTGACGCCGAGC 60.959 66.667 27.04 4.16 0.00 5.03
2444 3191 5.011125 CGAGGAAAGAGGAAAGATAGCCATA 59.989 44.000 0.00 0.00 0.00 2.74
2445 3192 6.295575 CGAGGAAAGAGGAAAGATAGCCATAT 60.296 42.308 0.00 0.00 0.00 1.78
2453 3200 7.017950 AGAGGAAAGATAGCCATATTGGATTGA 59.982 37.037 0.00 0.00 40.96 2.57
2462 3209 7.206981 AGCCATATTGGATTGAAATCTAACG 57.793 36.000 4.22 0.00 40.96 3.18
2486 3233 3.325870 TCACGCAAATCGACTGAAAGAT 58.674 40.909 0.56 0.00 41.67 2.40
2489 3236 3.123621 ACGCAAATCGACTGAAAGATGAC 59.876 43.478 0.56 0.00 41.67 3.06
2493 3240 5.445673 GCAAATCGACTGAAAGATGACTCAG 60.446 44.000 0.56 0.00 43.90 3.35
2494 3241 3.223423 TCGACTGAAAGATGACTCAGC 57.777 47.619 0.00 0.00 42.39 4.26
2495 3242 2.558359 TCGACTGAAAGATGACTCAGCA 59.442 45.455 0.00 0.00 42.39 4.41
2496 3243 3.005791 TCGACTGAAAGATGACTCAGCAA 59.994 43.478 0.00 0.00 42.39 3.91
2497 3244 3.122613 CGACTGAAAGATGACTCAGCAAC 59.877 47.826 0.00 0.00 42.39 4.17
2498 3245 4.314121 GACTGAAAGATGACTCAGCAACT 58.686 43.478 0.00 0.00 42.39 3.16
2500 3247 4.202295 ACTGAAAGATGACTCAGCAACTGA 60.202 41.667 0.00 0.00 42.39 3.41
2538 3773 0.326264 ATTTTGAGCTGAGGACCGCT 59.674 50.000 0.00 0.00 39.61 5.52
2554 3789 2.409870 GCTAGCCGCCATGTGCTTT 61.410 57.895 2.29 0.00 39.00 3.51
2580 3816 2.359531 GGTGAGAAGAGGTGTATCTCCG 59.640 54.545 0.00 0.00 39.04 4.63
2588 3824 3.704566 AGAGGTGTATCTCCGTTAATGCA 59.295 43.478 0.00 0.00 34.46 3.96
2602 3838 4.437390 CGTTAATGCAGACAAGTTCCCATC 60.437 45.833 0.00 0.00 0.00 3.51
2624 3860 8.509690 CCATCAGCGAGACAAAATTTCATATAT 58.490 33.333 0.00 0.00 0.00 0.86
2705 3942 4.641989 TCAGAAGCATAAGATTTTCAGCCC 59.358 41.667 0.00 0.00 0.00 5.19
2723 3960 3.983410 AGCCCTGAACCAACATATCCTAT 59.017 43.478 0.00 0.00 0.00 2.57
2736 3973 7.257016 CCAACATATCCTATAATCTGGGGTCAA 60.257 40.741 0.00 0.00 0.00 3.18
2737 3974 7.502060 ACATATCCTATAATCTGGGGTCAAG 57.498 40.000 0.00 0.00 0.00 3.02
2738 3975 6.445139 ACATATCCTATAATCTGGGGTCAAGG 59.555 42.308 0.00 0.00 0.00 3.61
2739 3976 3.598264 TCCTATAATCTGGGGTCAAGGG 58.402 50.000 0.00 0.00 0.00 3.95
2740 3977 2.040412 CCTATAATCTGGGGTCAAGGGC 59.960 54.545 0.00 0.00 0.00 5.19
2741 3978 1.912862 ATAATCTGGGGTCAAGGGCT 58.087 50.000 0.00 0.00 0.00 5.19
2742 3979 1.213296 TAATCTGGGGTCAAGGGCTC 58.787 55.000 0.00 0.00 0.00 4.70
2743 3980 0.846427 AATCTGGGGTCAAGGGCTCA 60.846 55.000 0.00 0.00 0.00 4.26
2784 4021 7.839907 TGCATGTTCTTAAGGAATAATTTGCT 58.160 30.769 1.85 0.00 36.24 3.91
2820 4057 3.304911 TGTGGTCTTCATGGAAAACCA 57.695 42.857 4.14 4.14 37.66 3.67
2959 4228 8.338259 AGAGAGCATAACGTTTTAGCATATTTG 58.662 33.333 5.91 0.00 0.00 2.32
3118 4389 7.480810 ACCTCATTGTTCTTTGTTTTAGACAC 58.519 34.615 0.00 0.00 38.18 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.321745 GCGTTGCAACATGAGACAAAATAG 59.678 41.667 28.01 8.47 0.00 1.73
32 33 9.745880 TTTTTATAGATAGTAACAGAAGAGCCG 57.254 33.333 0.00 0.00 0.00 5.52
168 708 8.852135 TCTCACATTTTCCCGTATTTTAGTTTT 58.148 29.630 0.00 0.00 0.00 2.43
169 709 8.398878 TCTCACATTTTCCCGTATTTTAGTTT 57.601 30.769 0.00 0.00 0.00 2.66
172 712 8.726988 TCTTTCTCACATTTTCCCGTATTTTAG 58.273 33.333 0.00 0.00 0.00 1.85
202 742 2.888834 TGCCTTTTCTTTCTGTTGCC 57.111 45.000 0.00 0.00 0.00 4.52
242 782 1.843851 AGAATAGACCCCATTTCGCCA 59.156 47.619 0.00 0.00 0.00 5.69
328 872 4.383444 CCATGTGCAGAGAACCTTAGATGA 60.383 45.833 0.00 0.00 0.00 2.92
368 912 1.337823 ACGACGGTGGAGAAGATTTGG 60.338 52.381 0.00 0.00 0.00 3.28
381 925 1.371389 GCGAAGACTTGACGACGGT 60.371 57.895 0.00 0.00 0.00 4.83
489 1048 8.088365 CCATCTCAACATAATTATGTCCGTAGA 58.912 37.037 27.07 23.82 45.55 2.59
570 1129 2.431430 TGCAGCACGCGAGAGAAG 60.431 61.111 15.93 0.00 46.97 2.85
644 1208 0.958822 AAGTGGTCATTCCGTTTGGC 59.041 50.000 0.00 0.00 39.52 4.52
656 1220 3.113260 ACTAGCTTGTGTCAAGTGGTC 57.887 47.619 0.00 0.00 0.00 4.02
704 1269 2.427905 CTGCACACACACGCATGC 60.428 61.111 7.91 7.91 37.54 4.06
726 1291 5.070446 AGAGGATGACCGAAAGCAATATGTA 59.930 40.000 0.00 0.00 41.83 2.29
728 1293 4.384056 AGAGGATGACCGAAAGCAATATG 58.616 43.478 0.00 0.00 41.83 1.78
737 1305 1.825474 GTCAGGAAGAGGATGACCGAA 59.175 52.381 0.00 0.00 41.83 4.30
744 1312 4.237976 TCTTCTACGTCAGGAAGAGGAT 57.762 45.455 18.28 0.00 41.72 3.24
752 1320 3.627732 ACGCATATCTTCTACGTCAGG 57.372 47.619 0.00 0.00 29.64 3.86
785 1353 2.457598 TCACTAGTGTGTCATCCCCTC 58.542 52.381 21.99 0.00 44.14 4.30
801 1369 3.057969 TCGACCAATTTGCTCATCACT 57.942 42.857 0.00 0.00 0.00 3.41
805 1373 1.064505 CGCATCGACCAATTTGCTCAT 59.935 47.619 5.04 0.00 32.97 2.90
867 1441 2.202932 ATGCAGGTCCGTGATCGC 60.203 61.111 0.00 0.00 35.54 4.58
1364 1938 3.322466 CCGTCCTGACCTTGGGCT 61.322 66.667 0.00 0.00 0.00 5.19
1422 1996 1.468914 TCTCAGGATGTTCGACTCACG 59.531 52.381 0.00 0.00 39.63 4.35
1440 2014 1.133598 CGTGATGGCAATGCATTGTCT 59.866 47.619 36.19 24.82 42.60 3.41
1446 2020 1.674980 TGAGCGTGATGGCAATGCA 60.675 52.632 7.79 0.00 34.64 3.96
1461 2035 3.172575 CTACACGGCGTGCGTGAG 61.173 66.667 37.21 24.60 40.22 3.51
1477 2051 1.144936 GCATGGCTCGAGGTAAGCT 59.855 57.895 15.58 0.00 39.75 3.74
1479 2053 1.141881 ACGCATGGCTCGAGGTAAG 59.858 57.895 15.58 0.00 0.00 2.34
1483 2057 2.887568 GTCACGCATGGCTCGAGG 60.888 66.667 15.58 0.00 0.00 4.63
1496 2070 0.517316 GGAAGCACCGTTCATGTCAC 59.483 55.000 0.00 0.00 0.00 3.67
1589 2163 4.263572 CTGGGGTGCGGGTTGTCA 62.264 66.667 0.00 0.00 0.00 3.58
1659 2233 8.642432 TGGAGATGACTATTTAGAACACATAGG 58.358 37.037 0.00 0.00 0.00 2.57
1661 2235 9.201989 ACTGGAGATGACTATTTAGAACACATA 57.798 33.333 0.00 0.00 0.00 2.29
1685 2263 2.570386 AGGTAGCATGGGGTAGAACT 57.430 50.000 0.00 0.00 0.00 3.01
1706 2284 1.018752 CGTGATCATGGGTGCGAACA 61.019 55.000 7.06 0.00 0.00 3.18
1772 2382 1.371183 CTTTGACCTGTCCTCCGCA 59.629 57.895 0.00 0.00 0.00 5.69
1914 2524 1.474330 TCTTCTAGCCTGATCGTGCA 58.526 50.000 8.74 0.00 0.00 4.57
1916 2526 5.398169 GTCATATCTTCTAGCCTGATCGTG 58.602 45.833 0.00 0.00 0.00 4.35
2018 2628 3.866651 CGAATTCACCATCTTCTCCACT 58.133 45.455 6.22 0.00 0.00 4.00
2076 2686 1.123077 ATTCTCTCAGCCACCGCATA 58.877 50.000 0.00 0.00 37.52 3.14
2151 2761 4.000325 CCACCATTGTGTCGACATTTCTA 59.000 43.478 23.12 6.39 41.09 2.10
2194 2804 4.627467 CAGCTGACTAGAAATAGCAAACGT 59.373 41.667 8.42 0.00 38.59 3.99
2209 2819 4.199310 TGCTTACAAAGTTTCAGCTGACT 58.801 39.130 18.03 9.31 0.00 3.41
2263 2873 1.588403 CAGCTCGGCGTCAGATCTG 60.588 63.158 17.07 17.07 0.00 2.90
2264 2874 2.780094 CCAGCTCGGCGTCAGATCT 61.780 63.158 6.85 0.00 0.00 2.75
2295 2907 2.281761 AAGTCCTTGCCTGCACCG 60.282 61.111 0.00 0.00 0.00 4.94
2354 3101 1.224039 CTCCCCGTCTCTCCTACGT 59.776 63.158 0.00 0.00 38.67 3.57
2444 3191 7.518370 GCGTGATACGTTAGATTTCAATCCAAT 60.518 37.037 0.00 0.00 44.73 3.16
2445 3192 6.237996 GCGTGATACGTTAGATTTCAATCCAA 60.238 38.462 0.00 0.00 44.73 3.53
2453 3200 5.517411 TCGATTTGCGTGATACGTTAGATTT 59.483 36.000 0.00 0.00 44.73 2.17
2462 3209 4.326278 TCTTTCAGTCGATTTGCGTGATAC 59.674 41.667 0.00 0.00 41.80 2.24
2476 3223 4.152045 CAGTTGCTGAGTCATCTTTCAGTC 59.848 45.833 0.00 0.00 42.17 3.51
2486 3233 4.772624 ACCTATAAGTCAGTTGCTGAGTCA 59.227 41.667 6.91 0.00 42.55 3.41
2489 3236 3.868077 GCACCTATAAGTCAGTTGCTGAG 59.132 47.826 0.00 0.00 41.46 3.35
2493 3240 4.116238 GAGAGCACCTATAAGTCAGTTGC 58.884 47.826 0.00 0.00 0.00 4.17
2494 3241 5.330455 TGAGAGCACCTATAAGTCAGTTG 57.670 43.478 0.00 0.00 0.00 3.16
2495 3242 7.661536 TTATGAGAGCACCTATAAGTCAGTT 57.338 36.000 0.00 0.00 0.00 3.16
2496 3243 7.847711 ATTATGAGAGCACCTATAAGTCAGT 57.152 36.000 0.00 0.00 0.00 3.41
2497 3244 9.553064 AAAATTATGAGAGCACCTATAAGTCAG 57.447 33.333 0.00 0.00 0.00 3.51
2498 3245 9.330063 CAAAATTATGAGAGCACCTATAAGTCA 57.670 33.333 0.00 0.00 0.00 3.41
2548 3783 3.251972 CCTCTTCTCACCAAGAAAAGCAC 59.748 47.826 0.00 0.00 43.39 4.40
2554 3789 5.087323 AGATACACCTCTTCTCACCAAGAA 58.913 41.667 0.00 0.00 41.81 2.52
2580 3816 4.458989 TGATGGGAACTTGTCTGCATTAAC 59.541 41.667 0.00 0.00 0.00 2.01
2588 3824 0.976641 TCGCTGATGGGAACTTGTCT 59.023 50.000 0.00 0.00 32.00 3.41
2602 3838 9.720667 TTTGATATATGAAATTTTGTCTCGCTG 57.279 29.630 0.00 0.00 0.00 5.18
2624 3860 9.684448 CTAGCATACGAGAAGATAGATTTTTGA 57.316 33.333 0.00 0.00 0.00 2.69
2705 3942 7.826252 CCCAGATTATAGGATATGTTGGTTCAG 59.174 40.741 0.00 0.00 0.00 3.02
2723 3960 1.213296 GAGCCCTTGACCCCAGATTA 58.787 55.000 0.00 0.00 0.00 1.75
2740 3977 2.416431 GCAACATGCTTAAGGCCTTGAG 60.416 50.000 28.49 28.49 40.96 3.02
2741 3978 1.545582 GCAACATGCTTAAGGCCTTGA 59.454 47.619 28.77 19.48 40.96 3.02
2742 3979 1.273048 TGCAACATGCTTAAGGCCTTG 59.727 47.619 28.77 13.48 45.31 3.61
2743 3980 1.631405 TGCAACATGCTTAAGGCCTT 58.369 45.000 24.18 24.18 45.31 4.35
2771 4008 6.019108 AGAAGGTTTGGAGCAAATTATTCCT 58.981 36.000 0.00 0.00 35.74 3.36
2784 4021 2.174639 ACCACATGTGAGAAGGTTTGGA 59.825 45.455 27.46 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.