Multiple sequence alignment - TraesCS5D01G231300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G231300 chr5D 100.000 7171 0 0 1 7171 338649861 338657031 0.000000e+00 13243.0
1 TraesCS5D01G231300 chr5D 96.226 53 2 0 5923 5975 338655753 338655805 3.560000e-13 87.9
2 TraesCS5D01G231300 chr5D 96.226 53 2 0 5893 5945 338655783 338655835 3.560000e-13 87.9
3 TraesCS5D01G231300 chr5B 94.312 3815 172 19 2682 6459 397830221 397834027 0.000000e+00 5801.0
4 TraesCS5D01G231300 chr5B 87.680 2224 110 56 433 2572 397828081 397830224 0.000000e+00 2438.0
5 TraesCS5D01G231300 chr5B 91.581 582 34 5 3168 3735 566408065 566407485 0.000000e+00 789.0
6 TraesCS5D01G231300 chr5B 87.017 724 28 22 6470 7161 397834188 397834877 0.000000e+00 756.0
7 TraesCS5D01G231300 chr5B 83.281 317 20 14 6 317 397827628 397827916 1.980000e-65 261.0
8 TraesCS5D01G231300 chr5A 93.988 3393 150 23 3112 6460 439548083 439551465 0.000000e+00 5086.0
9 TraesCS5D01G231300 chr5A 83.133 2407 155 93 149 2380 439545118 439547448 0.000000e+00 1964.0
10 TraesCS5D01G231300 chr5A 88.468 581 24 18 6595 7146 439551482 439552048 0.000000e+00 662.0
11 TraesCS5D01G231300 chr5A 88.571 385 30 7 2673 3052 439547682 439548057 8.480000e-124 455.0
12 TraesCS5D01G231300 chr5A 89.862 217 2 3 2372 2570 439547470 439547684 1.980000e-65 261.0
13 TraesCS5D01G231300 chr5A 91.667 132 5 5 1 127 439544995 439545125 2.060000e-40 178.0
14 TraesCS5D01G231300 chr5A 96.154 104 4 0 2569 2672 510559682 510559785 3.440000e-38 171.0
15 TraesCS5D01G231300 chr2B 92.784 582 27 5 3168 3735 247552121 247552701 0.000000e+00 828.0
16 TraesCS5D01G231300 chr2B 92.201 577 31 4 3168 3731 281533431 281532856 0.000000e+00 804.0
17 TraesCS5D01G231300 chr2B 91.237 582 36 5 3168 3735 269879481 269880061 0.000000e+00 778.0
18 TraesCS5D01G231300 chr2B 91.270 378 15 8 3372 3735 791291607 791291234 3.860000e-137 499.0
19 TraesCS5D01G231300 chr6B 92.535 576 29 4 3168 3730 154308809 154309383 0.000000e+00 813.0
20 TraesCS5D01G231300 chr6B 84.498 329 34 7 2896 3212 178023988 178023665 6.990000e-80 309.0
21 TraesCS5D01G231300 chr6B 97.059 102 2 1 2564 2665 95757264 95757364 3.440000e-38 171.0
22 TraesCS5D01G231300 chr6B 89.209 139 4 4 2441 2570 178026831 178026695 5.760000e-36 163.0
23 TraesCS5D01G231300 chr6B 87.879 132 5 4 2441 2563 559484698 559484827 2.080000e-30 145.0
24 TraesCS5D01G231300 chr3B 92.268 582 30 5 3168 3735 738243316 738243896 0.000000e+00 811.0
25 TraesCS5D01G231300 chr4A 92.096 582 30 6 3168 3735 552227360 552226781 0.000000e+00 806.0
26 TraesCS5D01G231300 chr2A 91.753 582 33 5 3168 3735 591091018 591091598 0.000000e+00 795.0
27 TraesCS5D01G231300 chr4B 92.363 419 16 10 3326 3730 569526700 569527116 3.730000e-162 582.0
28 TraesCS5D01G231300 chr7B 97.000 100 3 0 2569 2668 413721540 413721639 1.240000e-37 169.0
29 TraesCS5D01G231300 chr7B 96.040 101 4 0 2569 2669 159510602 159510702 1.600000e-36 165.0
30 TraesCS5D01G231300 chr7D 95.192 104 5 0 2564 2667 407716529 407716632 1.600000e-36 165.0
31 TraesCS5D01G231300 chr7D 95.918 98 4 0 2569 2666 13612717 13612620 7.450000e-35 159.0
32 TraesCS5D01G231300 chr3A 96.000 100 4 0 2566 2665 692869567 692869666 5.760000e-36 163.0
33 TraesCS5D01G231300 chr3D 93.458 107 7 0 2560 2666 585087281 585087387 7.450000e-35 159.0
34 TraesCS5D01G231300 chr1B 93.396 106 7 0 2560 2665 160464596 160464701 2.680000e-34 158.0
35 TraesCS5D01G231300 chr1D 80.000 105 21 0 6934 7038 291842220 291842116 2.140000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G231300 chr5D 338649861 338657031 7170 False 4472.933333 13243 97.4840 1 7171 3 chr5D.!!$F1 7170
1 TraesCS5D01G231300 chr5B 397827628 397834877 7249 False 2314.000000 5801 88.0725 6 7161 4 chr5B.!!$F1 7155
2 TraesCS5D01G231300 chr5B 566407485 566408065 580 True 789.000000 789 91.5810 3168 3735 1 chr5B.!!$R1 567
3 TraesCS5D01G231300 chr5A 439544995 439552048 7053 False 1434.333333 5086 89.2815 1 7146 6 chr5A.!!$F2 7145
4 TraesCS5D01G231300 chr2B 247552121 247552701 580 False 828.000000 828 92.7840 3168 3735 1 chr2B.!!$F1 567
5 TraesCS5D01G231300 chr2B 281532856 281533431 575 True 804.000000 804 92.2010 3168 3731 1 chr2B.!!$R1 563
6 TraesCS5D01G231300 chr2B 269879481 269880061 580 False 778.000000 778 91.2370 3168 3735 1 chr2B.!!$F2 567
7 TraesCS5D01G231300 chr6B 154308809 154309383 574 False 813.000000 813 92.5350 3168 3730 1 chr6B.!!$F2 562
8 TraesCS5D01G231300 chr6B 178023665 178026831 3166 True 236.000000 309 86.8535 2441 3212 2 chr6B.!!$R1 771
9 TraesCS5D01G231300 chr3B 738243316 738243896 580 False 811.000000 811 92.2680 3168 3735 1 chr3B.!!$F1 567
10 TraesCS5D01G231300 chr4A 552226781 552227360 579 True 806.000000 806 92.0960 3168 3735 1 chr4A.!!$R1 567
11 TraesCS5D01G231300 chr2A 591091018 591091598 580 False 795.000000 795 91.7530 3168 3735 1 chr2A.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 559 0.669318 TAGTGCGTTGAAGCGAAGGG 60.669 55.000 0.00 0.0 40.67 3.95 F
603 723 1.153588 GCCACAGAGAGCAGAGAGC 60.154 63.158 0.00 0.0 46.19 4.09 F
1475 1683 0.030101 CAATCTCTCCGTCTCCTCGC 59.970 60.000 0.00 0.0 0.00 5.03 F
1923 2158 0.250513 GACGGGCAGTCCTCTGATTT 59.749 55.000 6.50 0.0 43.95 2.17 F
2065 2332 0.255890 GGCTGCCTTTCACCCTCATA 59.744 55.000 12.43 0.0 0.00 2.15 F
2252 2524 0.520404 TACGTCCTGCTGTTCGTCTC 59.480 55.000 11.88 0.0 37.66 3.36 F
2959 5824 0.749091 ATGGGTGACGGTCGATACGA 60.749 55.000 17.51 0.0 34.93 3.43 F
4043 6952 2.384382 GCATTTTGTCACCGAGTGTTG 58.616 47.619 4.33 0.0 34.79 3.33 F
4877 7786 0.391130 TATGGTTGCTGCCGTCAGAC 60.391 55.000 0.00 0.0 42.95 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1511 0.036010 ATTCTCACCGGAAGCACCAG 60.036 55.000 9.46 0.0 38.90 4.00 R
1608 1839 0.110486 TCTGCACTTCCCAAGAACCC 59.890 55.000 0.00 0.0 0.00 4.11 R
2959 5824 0.179084 CGATTACACATGCCCGACCT 60.179 55.000 0.00 0.0 0.00 3.85 R
3085 5952 1.226018 GGCTTTCACCGCGAAATCG 60.226 57.895 8.23 0.0 42.69 3.34 R
3243 6129 1.639298 GAGACCACCAATCTGCACGC 61.639 60.000 0.00 0.0 0.00 5.34 R
4158 7067 2.009774 CAGAAGGGGAAACTGCATACG 58.990 52.381 0.00 0.0 0.00 3.06 R
4623 7532 0.250553 ACCGATGTTTTTCCTGCCGA 60.251 50.000 0.00 0.0 0.00 5.54 R
5213 8122 1.406898 TCTGGATCTGCAGCTACTTCG 59.593 52.381 9.47 0.0 0.00 3.79 R
6538 9616 0.606401 AGCCACTTTGGGTCACATCG 60.606 55.000 0.00 0.0 46.99 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 130 6.925165 CAGATAGATTGTTTGTTGCACCTTTT 59.075 34.615 0.00 0.00 0.00 2.27
122 131 7.115378 CAGATAGATTGTTTGTTGCACCTTTTC 59.885 37.037 0.00 0.00 0.00 2.29
123 132 5.343307 AGATTGTTTGTTGCACCTTTTCT 57.657 34.783 0.00 0.00 0.00 2.52
124 133 5.351458 AGATTGTTTGTTGCACCTTTTCTC 58.649 37.500 0.00 0.00 0.00 2.87
125 134 4.799564 TTGTTTGTTGCACCTTTTCTCT 57.200 36.364 0.00 0.00 0.00 3.10
126 135 4.370364 TGTTTGTTGCACCTTTTCTCTC 57.630 40.909 0.00 0.00 0.00 3.20
127 136 4.016444 TGTTTGTTGCACCTTTTCTCTCT 58.984 39.130 0.00 0.00 0.00 3.10
128 137 4.462483 TGTTTGTTGCACCTTTTCTCTCTT 59.538 37.500 0.00 0.00 0.00 2.85
129 138 5.047377 TGTTTGTTGCACCTTTTCTCTCTTT 60.047 36.000 0.00 0.00 0.00 2.52
130 139 5.659440 TTGTTGCACCTTTTCTCTCTTTT 57.341 34.783 0.00 0.00 0.00 2.27
131 140 5.248870 TGTTGCACCTTTTCTCTCTTTTC 57.751 39.130 0.00 0.00 0.00 2.29
132 141 4.949856 TGTTGCACCTTTTCTCTCTTTTCT 59.050 37.500 0.00 0.00 0.00 2.52
133 142 5.418840 TGTTGCACCTTTTCTCTCTTTTCTT 59.581 36.000 0.00 0.00 0.00 2.52
134 143 6.071391 TGTTGCACCTTTTCTCTCTTTTCTTT 60.071 34.615 0.00 0.00 0.00 2.52
135 144 6.530019 TGCACCTTTTCTCTCTTTTCTTTT 57.470 33.333 0.00 0.00 0.00 2.27
136 145 6.564328 TGCACCTTTTCTCTCTTTTCTTTTC 58.436 36.000 0.00 0.00 0.00 2.29
137 146 6.378280 TGCACCTTTTCTCTCTTTTCTTTTCT 59.622 34.615 0.00 0.00 0.00 2.52
138 147 7.093771 TGCACCTTTTCTCTCTTTTCTTTTCTT 60.094 33.333 0.00 0.00 0.00 2.52
139 148 7.761704 GCACCTTTTCTCTCTTTTCTTTTCTTT 59.238 33.333 0.00 0.00 0.00 2.52
140 149 9.645059 CACCTTTTCTCTCTTTTCTTTTCTTTT 57.355 29.630 0.00 0.00 0.00 2.27
141 150 9.862371 ACCTTTTCTCTCTTTTCTTTTCTTTTC 57.138 29.630 0.00 0.00 0.00 2.29
160 169 7.351166 TCTTTTCTTTTCTTTTCTACTCCCCA 58.649 34.615 0.00 0.00 0.00 4.96
161 170 6.954487 TTTCTTTTCTTTTCTACTCCCCAC 57.046 37.500 0.00 0.00 0.00 4.61
318 353 1.822990 CGGATAATTAGCCCGGCTAGA 59.177 52.381 18.59 10.76 42.34 2.43
330 365 1.550976 CCGGCTAGATAATCCTGGGAC 59.449 57.143 0.00 0.00 0.00 4.46
331 366 2.530701 CGGCTAGATAATCCTGGGACT 58.469 52.381 0.00 0.00 0.00 3.85
333 368 4.087182 CGGCTAGATAATCCTGGGACTAA 58.913 47.826 0.00 0.00 0.00 2.24
338 373 8.603304 GGCTAGATAATCCTGGGACTAAATTAA 58.397 37.037 0.00 0.00 0.00 1.40
339 374 9.438228 GCTAGATAATCCTGGGACTAAATTAAC 57.562 37.037 0.00 0.00 0.00 2.01
342 379 9.799106 AGATAATCCTGGGACTAAATTAACATG 57.201 33.333 0.00 0.00 0.00 3.21
354 391 9.959749 GACTAAATTAACATGAAACAGTGGAAA 57.040 29.630 0.00 0.00 0.00 3.13
376 421 6.894339 AATATTATGCCTTTTCCTAACCCG 57.106 37.500 0.00 0.00 0.00 5.28
439 541 3.495453 GGGGGCGAGTTAACATATTGCTA 60.495 47.826 8.61 0.00 0.00 3.49
457 559 0.669318 TAGTGCGTTGAAGCGAAGGG 60.669 55.000 0.00 0.00 40.67 3.95
512 623 6.014499 AGAGAGAGAGAGATACTGCTACTACC 60.014 46.154 0.00 0.00 0.00 3.18
526 637 3.310860 CTACCACGTCCTGCCCACC 62.311 68.421 0.00 0.00 0.00 4.61
599 719 2.661399 GCAGCCACAGAGAGCAGA 59.339 61.111 0.00 0.00 0.00 4.26
600 720 1.448189 GCAGCCACAGAGAGCAGAG 60.448 63.158 0.00 0.00 0.00 3.35
603 723 1.153588 GCCACAGAGAGCAGAGAGC 60.154 63.158 0.00 0.00 46.19 4.09
895 1055 4.473444 AGTGCATGGGAAGAAGAAGAAAA 58.527 39.130 0.00 0.00 0.00 2.29
989 1153 2.612251 GAGAGGGAGGGAGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
990 1154 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
991 1155 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
992 1156 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
993 1157 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
994 1158 3.369388 GGAGGGAGGGAGGGAGGT 61.369 72.222 0.00 0.00 0.00 3.85
995 1159 2.019272 GGAGGGAGGGAGGGAGGTA 61.019 68.421 0.00 0.00 0.00 3.08
996 1160 1.544703 GAGGGAGGGAGGGAGGTAG 59.455 68.421 0.00 0.00 0.00 3.18
1091 1255 4.895889 CACCCTCTTCCCTTCTTTTCTTTT 59.104 41.667 0.00 0.00 0.00 2.27
1124 1304 1.267121 TCTAGCGTTGCTTCCTTCCT 58.733 50.000 0.00 0.00 40.44 3.36
1152 1360 5.632244 AACTGTTTGGTGTCTTACGTTTT 57.368 34.783 0.00 0.00 0.00 2.43
1154 1362 5.633927 ACTGTTTGGTGTCTTACGTTTTTC 58.366 37.500 0.00 0.00 0.00 2.29
1155 1363 4.984205 TGTTTGGTGTCTTACGTTTTTCC 58.016 39.130 0.00 0.00 0.00 3.13
1156 1364 4.701171 TGTTTGGTGTCTTACGTTTTTCCT 59.299 37.500 0.00 0.00 0.00 3.36
1158 1366 4.886247 TGGTGTCTTACGTTTTTCCTTG 57.114 40.909 0.00 0.00 0.00 3.61
1160 1368 3.628942 GGTGTCTTACGTTTTTCCTTGGT 59.371 43.478 0.00 0.00 0.00 3.67
1161 1369 4.260907 GGTGTCTTACGTTTTTCCTTGGTC 60.261 45.833 0.00 0.00 0.00 4.02
1162 1370 3.556775 TGTCTTACGTTTTTCCTTGGTCG 59.443 43.478 0.00 0.00 0.00 4.79
1164 1372 1.950828 TACGTTTTTCCTTGGTCGCA 58.049 45.000 0.00 0.00 0.00 5.10
1278 1486 1.929836 GCTAGATTCTTGCCACAGACG 59.070 52.381 8.68 0.00 0.00 4.18
1284 1492 4.228567 TTGCCACAGACGCCGTCA 62.229 61.111 20.65 0.00 34.60 4.35
1303 1511 2.015587 CATCCTCTTTCTTCTGCTGGC 58.984 52.381 0.00 0.00 0.00 4.85
1311 1519 1.602888 CTTCTGCTGGCTGGTGCTT 60.603 57.895 0.00 0.00 39.59 3.91
1316 1524 4.335647 CTGGCTGGTGCTTCCGGT 62.336 66.667 0.00 0.00 44.16 5.28
1317 1525 4.641645 TGGCTGGTGCTTCCGGTG 62.642 66.667 0.00 0.00 44.16 4.94
1318 1526 4.329545 GGCTGGTGCTTCCGGTGA 62.330 66.667 0.00 0.00 44.16 4.02
1319 1527 2.743928 GCTGGTGCTTCCGGTGAG 60.744 66.667 0.00 1.83 44.16 3.51
1320 1528 3.059982 CTGGTGCTTCCGGTGAGA 58.940 61.111 0.00 0.00 39.52 3.27
1321 1529 1.371183 CTGGTGCTTCCGGTGAGAA 59.629 57.895 0.00 0.00 39.52 2.87
1352 1560 0.796312 CAAGCTTATTCGTGCCGTGT 59.204 50.000 0.00 0.00 0.00 4.49
1353 1561 0.796312 AAGCTTATTCGTGCCGTGTG 59.204 50.000 0.00 0.00 0.00 3.82
1369 1577 0.534203 TGTGCGTCCCTTTGGAAGAC 60.534 55.000 0.00 0.00 44.07 3.01
1448 1656 1.364626 CTCCGACTGTCATGCTTGCC 61.365 60.000 8.73 0.00 0.00 4.52
1450 1658 1.672030 CGACTGTCATGCTTGCCCA 60.672 57.895 8.73 0.00 0.00 5.36
1451 1659 1.642037 CGACTGTCATGCTTGCCCAG 61.642 60.000 8.73 13.81 0.00 4.45
1452 1660 0.607489 GACTGTCATGCTTGCCCAGT 60.607 55.000 18.30 18.30 37.43 4.00
1453 1661 0.692476 ACTGTCATGCTTGCCCAGTA 59.308 50.000 17.37 0.00 34.80 2.74
1454 1662 1.073763 ACTGTCATGCTTGCCCAGTAA 59.926 47.619 17.37 0.00 34.80 2.24
1455 1663 1.470098 CTGTCATGCTTGCCCAGTAAC 59.530 52.381 9.52 0.00 0.00 2.50
1457 1665 0.403655 TCATGCTTGCCCAGTAACCA 59.596 50.000 0.00 0.00 0.00 3.67
1458 1666 1.202989 TCATGCTTGCCCAGTAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
1459 1667 1.826720 CATGCTTGCCCAGTAACCAAT 59.173 47.619 0.00 0.00 0.00 3.16
1460 1668 1.544724 TGCTTGCCCAGTAACCAATC 58.455 50.000 0.00 0.00 0.00 2.67
1461 1669 1.075374 TGCTTGCCCAGTAACCAATCT 59.925 47.619 0.00 0.00 0.00 2.40
1462 1670 1.745653 GCTTGCCCAGTAACCAATCTC 59.254 52.381 0.00 0.00 0.00 2.75
1463 1671 2.619074 GCTTGCCCAGTAACCAATCTCT 60.619 50.000 0.00 0.00 0.00 3.10
1464 1672 3.274288 CTTGCCCAGTAACCAATCTCTC 58.726 50.000 0.00 0.00 0.00 3.20
1465 1673 1.559682 TGCCCAGTAACCAATCTCTCC 59.440 52.381 0.00 0.00 0.00 3.71
1466 1674 1.473434 GCCCAGTAACCAATCTCTCCG 60.473 57.143 0.00 0.00 0.00 4.63
1467 1675 1.831736 CCCAGTAACCAATCTCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
1468 1676 2.159085 CCCAGTAACCAATCTCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
1469 1677 2.761208 CCAGTAACCAATCTCTCCGTCT 59.239 50.000 0.00 0.00 0.00 4.18
1470 1678 3.181485 CCAGTAACCAATCTCTCCGTCTC 60.181 52.174 0.00 0.00 0.00 3.36
1471 1679 3.025262 AGTAACCAATCTCTCCGTCTCC 58.975 50.000 0.00 0.00 0.00 3.71
1472 1680 2.239681 AACCAATCTCTCCGTCTCCT 57.760 50.000 0.00 0.00 0.00 3.69
1473 1681 1.770294 ACCAATCTCTCCGTCTCCTC 58.230 55.000 0.00 0.00 0.00 3.71
1474 1682 0.665835 CCAATCTCTCCGTCTCCTCG 59.334 60.000 0.00 0.00 0.00 4.63
1475 1683 0.030101 CAATCTCTCCGTCTCCTCGC 59.970 60.000 0.00 0.00 0.00 5.03
1476 1684 1.440938 AATCTCTCCGTCTCCTCGCG 61.441 60.000 0.00 0.00 0.00 5.87
1477 1685 4.244802 CTCTCCGTCTCCTCGCGC 62.245 72.222 0.00 0.00 0.00 6.86
1486 1694 3.132481 CTCCTCGCGCCTCTTCCTC 62.132 68.421 0.00 0.00 0.00 3.71
1500 1708 5.682730 GCCTCTTCCTCTACCAGTTTATGTC 60.683 48.000 0.00 0.00 0.00 3.06
1522 1730 2.145399 TTTTGGGCCTGGCATTGCA 61.145 52.632 22.05 0.00 0.00 4.08
1538 1746 4.676196 GCATTGCACTTGGATCTTGGTTAG 60.676 45.833 3.15 0.00 0.00 2.34
1543 1754 3.264450 CACTTGGATCTTGGTTAGTCCCT 59.736 47.826 0.00 0.00 34.77 4.20
1608 1839 0.992072 CACGGCGTGAGTTGACTATG 59.008 55.000 34.85 2.32 35.23 2.23
1770 2005 5.645201 ACTGGATCTAGCACTATGATACCA 58.355 41.667 5.91 0.00 0.00 3.25
1771 2006 5.478679 ACTGGATCTAGCACTATGATACCAC 59.521 44.000 5.91 0.00 0.00 4.16
1772 2007 5.645201 TGGATCTAGCACTATGATACCACT 58.355 41.667 0.00 0.00 0.00 4.00
1851 2086 2.610976 CGGGATTAGTTGTTCGTGTCCA 60.611 50.000 0.00 0.00 0.00 4.02
1862 2097 1.275666 TCGTGTCCATCCCATTGTCT 58.724 50.000 0.00 0.00 0.00 3.41
1863 2098 1.628340 TCGTGTCCATCCCATTGTCTT 59.372 47.619 0.00 0.00 0.00 3.01
1870 2105 3.117776 TCCATCCCATTGTCTTCATCCTG 60.118 47.826 0.00 0.00 0.00 3.86
1872 2107 1.634973 TCCCATTGTCTTCATCCTGCA 59.365 47.619 0.00 0.00 0.00 4.41
1874 2109 1.399440 CCATTGTCTTCATCCTGCACG 59.601 52.381 0.00 0.00 0.00 5.34
1894 2129 2.391879 GCTAGCCTGTTATACGGTTCG 58.608 52.381 2.29 0.00 0.00 3.95
1906 2141 1.856802 ACGGTTCGGTTTACAGTGAC 58.143 50.000 0.00 0.00 0.00 3.67
1908 2143 1.142474 GGTTCGGTTTACAGTGACGG 58.858 55.000 0.00 0.00 0.00 4.79
1923 2158 0.250513 GACGGGCAGTCCTCTGATTT 59.749 55.000 6.50 0.00 43.95 2.17
1957 2206 6.350103 TCTTGTTGTAATGTACTGTGGTTCA 58.650 36.000 0.00 0.00 0.00 3.18
1958 2207 6.995686 TCTTGTTGTAATGTACTGTGGTTCAT 59.004 34.615 0.00 0.00 35.48 2.57
1959 2208 7.500892 TCTTGTTGTAATGTACTGTGGTTCATT 59.499 33.333 0.00 6.33 42.88 2.57
1960 2209 7.575414 TGTTGTAATGTACTGTGGTTCATTT 57.425 32.000 6.38 0.00 41.42 2.32
1982 2240 7.408756 TTTATTCATCCTTGGGTCTCATTTG 57.591 36.000 0.00 0.00 0.00 2.32
1983 2241 4.656100 TTCATCCTTGGGTCTCATTTGA 57.344 40.909 0.00 0.00 0.00 2.69
1984 2242 4.226427 TCATCCTTGGGTCTCATTTGAG 57.774 45.455 0.97 0.97 43.36 3.02
1985 2243 2.496899 TCCTTGGGTCTCATTTGAGC 57.503 50.000 2.60 0.00 41.80 4.26
1986 2244 1.988107 TCCTTGGGTCTCATTTGAGCT 59.012 47.619 2.60 0.00 41.80 4.09
1987 2245 2.089980 CCTTGGGTCTCATTTGAGCTG 58.910 52.381 0.00 0.00 41.80 4.24
1988 2246 1.471684 CTTGGGTCTCATTTGAGCTGC 59.528 52.381 0.00 0.00 41.80 5.25
1989 2247 0.401356 TGGGTCTCATTTGAGCTGCA 59.599 50.000 1.02 0.00 41.80 4.41
1990 2248 1.005097 TGGGTCTCATTTGAGCTGCAT 59.995 47.619 1.02 0.00 41.80 3.96
1991 2249 1.674962 GGGTCTCATTTGAGCTGCATC 59.325 52.381 1.02 0.00 41.80 3.91
1992 2250 1.674962 GGTCTCATTTGAGCTGCATCC 59.325 52.381 1.02 0.00 41.80 3.51
1993 2251 2.362736 GTCTCATTTGAGCTGCATCCA 58.637 47.619 1.02 0.00 41.80 3.41
1994 2252 2.355132 GTCTCATTTGAGCTGCATCCAG 59.645 50.000 1.02 0.00 41.80 3.86
2016 2274 6.425721 CCAGCATTCATTTGAAATGTTCTTGT 59.574 34.615 16.62 0.00 37.61 3.16
2030 2288 4.721132 TGTTCTTGTATCTTTTTCCCGGT 58.279 39.130 0.00 0.00 0.00 5.28
2036 2294 0.958876 ATCTTTTTCCCGGTGTCCGC 60.959 55.000 0.00 0.00 46.86 5.54
2045 2312 4.626081 GGTGTCCGCCAGTGCTGT 62.626 66.667 0.00 0.00 34.43 4.40
2046 2313 3.349006 GTGTCCGCCAGTGCTGTG 61.349 66.667 0.00 0.00 34.43 3.66
2047 2314 4.624364 TGTCCGCCAGTGCTGTGG 62.624 66.667 0.78 0.78 41.01 4.17
2065 2332 0.255890 GGCTGCCTTTCACCCTCATA 59.744 55.000 12.43 0.00 0.00 2.15
2066 2333 1.383523 GCTGCCTTTCACCCTCATAC 58.616 55.000 0.00 0.00 0.00 2.39
2074 2341 3.998913 TTCACCCTCATACAGATTGCA 57.001 42.857 0.00 0.00 0.00 4.08
2075 2342 3.998913 TCACCCTCATACAGATTGCAA 57.001 42.857 0.00 0.00 0.00 4.08
2076 2343 3.877559 TCACCCTCATACAGATTGCAAG 58.122 45.455 4.94 0.00 0.00 4.01
2133 2400 8.135529 ACTTCCTTTTGTCTTTTAAATCCGAAG 58.864 33.333 0.00 0.00 0.00 3.79
2153 2423 3.484407 AGATGCAGCACTTGTTTTCTCT 58.516 40.909 4.07 0.00 0.00 3.10
2237 2509 6.912951 AATATAAGGTAGATGCCACTACGT 57.087 37.500 0.00 0.00 42.30 3.57
2252 2524 0.520404 TACGTCCTGCTGTTCGTCTC 59.480 55.000 11.88 0.00 37.66 3.36
2253 2525 1.285950 CGTCCTGCTGTTCGTCTCA 59.714 57.895 0.00 0.00 0.00 3.27
2301 2577 5.417894 GGGTTAAGTTATTGTCAAGGAAGGG 59.582 44.000 0.00 0.00 0.00 3.95
2324 2600 3.758554 AGAAAACAATTGTCATCTCCCCG 59.241 43.478 12.39 0.00 0.00 5.73
2345 2621 5.221322 CCCGTCTCACTAATCATTGATCAGA 60.221 44.000 3.72 0.00 0.00 3.27
2359 2635 3.251484 TGATCAGACCTCACTTTCCCTT 58.749 45.455 0.00 0.00 0.00 3.95
2408 2715 3.701205 TTCTCTGAATGCCAAGTGCTA 57.299 42.857 0.00 0.00 42.00 3.49
2570 5405 6.661805 TGGGATTTCTGGACCTTGTTAATTAC 59.338 38.462 0.00 0.00 0.00 1.89
2572 5407 7.067129 GGGATTTCTGGACCTTGTTAATTACTC 59.933 40.741 0.00 0.00 0.00 2.59
2573 5408 7.067129 GGATTTCTGGACCTTGTTAATTACTCC 59.933 40.741 0.00 0.00 0.00 3.85
2574 5409 5.431179 TCTGGACCTTGTTAATTACTCCC 57.569 43.478 0.00 0.00 0.00 4.30
2576 5411 5.189145 TCTGGACCTTGTTAATTACTCCCTC 59.811 44.000 0.00 0.00 0.00 4.30
2577 5412 4.226620 TGGACCTTGTTAATTACTCCCTCC 59.773 45.833 0.00 0.00 0.00 4.30
2578 5413 4.439968 GACCTTGTTAATTACTCCCTCCG 58.560 47.826 0.00 0.00 0.00 4.63
2579 5414 3.842436 ACCTTGTTAATTACTCCCTCCGT 59.158 43.478 0.00 0.00 0.00 4.69
2580 5415 4.287845 ACCTTGTTAATTACTCCCTCCGTT 59.712 41.667 0.00 0.00 0.00 4.44
2581 5416 4.874396 CCTTGTTAATTACTCCCTCCGTTC 59.126 45.833 0.00 0.00 0.00 3.95
2582 5417 4.476628 TGTTAATTACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
2583 5418 3.839490 TGTTAATTACTCCCTCCGTTCCA 59.161 43.478 0.00 0.00 0.00 3.53
2584 5419 4.286549 TGTTAATTACTCCCTCCGTTCCAA 59.713 41.667 0.00 0.00 0.00 3.53
2585 5420 5.221884 TGTTAATTACTCCCTCCGTTCCAAA 60.222 40.000 0.00 0.00 0.00 3.28
2586 5421 4.376225 AATTACTCCCTCCGTTCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
2587 5422 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2588 5423 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2589 5424 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2590 5425 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2591 5426 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2592 5427 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2593 5428 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2594 5429 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2595 5430 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2596 5431 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2597 5432 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2598 5433 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2599 5434 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2600 5435 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2601 5436 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2602 5437 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2603 5438 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2604 5439 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2605 5440 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2606 5441 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2607 5442 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2641 5476 7.648039 ACAAAATTAGTACAAAGTTGGGTCA 57.352 32.000 0.00 0.00 0.00 4.02
2642 5477 8.245195 ACAAAATTAGTACAAAGTTGGGTCAT 57.755 30.769 0.00 0.00 0.00 3.06
2643 5478 8.357402 ACAAAATTAGTACAAAGTTGGGTCATC 58.643 33.333 0.00 0.00 0.00 2.92
2644 5479 8.576442 CAAAATTAGTACAAAGTTGGGTCATCT 58.424 33.333 0.00 0.00 0.00 2.90
2645 5480 9.802039 AAAATTAGTACAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
2646 5481 9.975218 AAATTAGTACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
2647 5482 9.975218 AATTAGTACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
2648 5483 9.975218 ATTAGTACAAAGTTGGGTCATCTATTT 57.025 29.630 0.00 0.00 0.00 1.40
2649 5484 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2651 5486 9.449719 AGTACAAAGTTGGGTCATCTATTTTAG 57.550 33.333 0.00 0.00 0.00 1.85
2652 5487 9.444600 GTACAAAGTTGGGTCATCTATTTTAGA 57.555 33.333 0.00 0.00 39.50 2.10
2653 5488 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
2654 5489 9.533831 ACAAAGTTGGGTCATCTATTTTAGAAT 57.466 29.630 0.00 0.00 38.50 2.40
2655 5490 9.793252 CAAAGTTGGGTCATCTATTTTAGAATG 57.207 33.333 0.00 0.00 38.50 2.67
2656 5491 8.525290 AAGTTGGGTCATCTATTTTAGAATGG 57.475 34.615 0.00 0.00 38.50 3.16
2657 5492 7.872138 AGTTGGGTCATCTATTTTAGAATGGA 58.128 34.615 0.00 0.00 38.50 3.41
2658 5493 7.995488 AGTTGGGTCATCTATTTTAGAATGGAG 59.005 37.037 0.00 0.00 36.39 3.86
2659 5494 6.841601 TGGGTCATCTATTTTAGAATGGAGG 58.158 40.000 0.00 0.00 36.39 4.30
2660 5495 6.183361 TGGGTCATCTATTTTAGAATGGAGGG 60.183 42.308 4.57 0.00 36.39 4.30
2661 5496 6.044404 GGGTCATCTATTTTAGAATGGAGGGA 59.956 42.308 4.57 0.04 36.39 4.20
2662 5497 7.164803 GGTCATCTATTTTAGAATGGAGGGAG 58.835 42.308 4.57 0.00 36.39 4.30
2663 5498 7.202139 GGTCATCTATTTTAGAATGGAGGGAGT 60.202 40.741 4.57 0.00 36.39 3.85
2664 5499 8.871125 GTCATCTATTTTAGAATGGAGGGAGTA 58.129 37.037 4.57 0.00 36.39 2.59
2665 5500 8.871125 TCATCTATTTTAGAATGGAGGGAGTAC 58.129 37.037 4.57 0.00 36.39 2.73
2666 5501 8.875168 CATCTATTTTAGAATGGAGGGAGTACT 58.125 37.037 0.00 0.00 36.39 2.73
2668 5503 9.947189 TCTATTTTAGAATGGAGGGAGTACTAA 57.053 33.333 0.00 0.00 30.37 2.24
2671 5506 8.618240 TTTTAGAATGGAGGGAGTACTAATGA 57.382 34.615 0.00 0.00 0.00 2.57
2672 5507 8.798975 TTTAGAATGGAGGGAGTACTAATGAT 57.201 34.615 0.00 0.00 0.00 2.45
2673 5508 8.798975 TTAGAATGGAGGGAGTACTAATGATT 57.201 34.615 0.00 0.00 0.00 2.57
2674 5509 9.892444 TTAGAATGGAGGGAGTACTAATGATTA 57.108 33.333 0.00 0.00 0.00 1.75
2675 5510 8.980832 AGAATGGAGGGAGTACTAATGATTAT 57.019 34.615 0.00 0.00 0.00 1.28
2676 5511 9.398921 AGAATGGAGGGAGTACTAATGATTATT 57.601 33.333 0.00 0.00 0.00 1.40
2752 5592 1.645710 CAACTCCAGACCCCTAGTGT 58.354 55.000 0.00 0.00 0.00 3.55
2852 5717 7.537596 TTTCCTCCATTATTGATGTGTTGTT 57.462 32.000 0.00 0.00 33.71 2.83
2915 5780 3.874543 TCTACGCTGTTGTCATGTGTTTT 59.125 39.130 0.00 0.00 0.00 2.43
2959 5824 0.749091 ATGGGTGACGGTCGATACGA 60.749 55.000 17.51 0.00 34.93 3.43
3003 5869 6.100004 ACTGTGTTAACGTAATCTCAGATGG 58.900 40.000 16.64 0.00 0.00 3.51
3040 5907 7.391554 TCAGATAGTTTTGACATTTTCCTGAGG 59.608 37.037 0.00 0.00 0.00 3.86
3052 5919 3.703001 TTCCTGAGGTTCTCCACAATC 57.297 47.619 0.00 0.00 34.19 2.67
3083 5950 6.273825 TGTTGCGTAAACAAAATTGGTATGT 58.726 32.000 3.70 0.00 45.85 2.29
3085 5952 4.681942 TGCGTAAACAAAATTGGTATGTGC 59.318 37.500 0.00 0.00 0.00 4.57
3203 6089 4.101898 TGGCTACCAAAGAGTGTTTCTGTA 59.898 41.667 0.00 0.00 35.91 2.74
3214 6100 6.281405 AGAGTGTTTCTGTATTCTGTTTCGT 58.719 36.000 0.00 0.00 33.93 3.85
3243 6129 6.614160 TGATATGCTCACAAGTTTGTTGATG 58.386 36.000 0.00 0.00 39.91 3.07
3592 6478 9.612066 ATCCTGTTTCACACACAAATTATTTTT 57.388 25.926 0.00 0.00 0.00 1.94
3639 6525 6.667414 ACCACCTTAAAATATTTCTGATGGCA 59.333 34.615 0.10 0.00 0.00 4.92
3745 6645 6.420638 ACCCTATGCCGTTTATTTCTTAACT 58.579 36.000 0.00 0.00 0.00 2.24
3778 6686 9.989869 GCTTATAGCTTAAAGTAAAGAAAGTGG 57.010 33.333 0.00 0.00 38.45 4.00
3785 6693 7.114953 GCTTAAAGTAAAGAAAGTGGATTGTGC 59.885 37.037 0.00 0.00 0.00 4.57
3787 6695 7.817418 AAAGTAAAGAAAGTGGATTGTGCTA 57.183 32.000 0.00 0.00 0.00 3.49
3793 6701 6.506500 AGAAAGTGGATTGTGCTATCAAAG 57.493 37.500 0.00 0.00 0.00 2.77
3827 6735 4.222124 AGTAAAACCTACCTGCATGGAG 57.778 45.455 7.35 7.35 39.71 3.86
3975 6883 4.783227 ACTGCTGAAGGAAAGAATACCCTA 59.217 41.667 0.00 0.00 0.00 3.53
3980 6888 7.347222 TGCTGAAGGAAAGAATACCCTAATAGA 59.653 37.037 0.00 0.00 0.00 1.98
4043 6952 2.384382 GCATTTTGTCACCGAGTGTTG 58.616 47.619 4.33 0.00 34.79 3.33
4073 6982 5.163622 ACCAGTGCTGCATTATGTAAATGAC 60.164 40.000 5.27 0.00 0.00 3.06
4107 7016 5.059161 GCTGGTGATAACTCATATGCAGAA 58.941 41.667 0.00 0.00 32.98 3.02
4468 7377 5.819901 GGAAAGATTCGATCATTGTTCTCCT 59.180 40.000 0.00 0.00 0.00 3.69
4526 7435 5.221185 GCTGAAGGTTGTCGGTAGATGTATA 60.221 44.000 0.00 0.00 0.00 1.47
4529 7438 6.776116 TGAAGGTTGTCGGTAGATGTATAGAT 59.224 38.462 0.00 0.00 0.00 1.98
4547 7456 3.159472 AGATGCCATTGCTTCAAAGACA 58.841 40.909 7.32 0.00 42.51 3.41
4623 7532 5.909621 AGCATGCACTGAAATAATTGAGT 57.090 34.783 21.98 0.00 32.87 3.41
4652 7561 2.871096 AAACATCGGTAGCTCCCAAA 57.129 45.000 0.00 0.00 0.00 3.28
4877 7786 0.391130 TATGGTTGCTGCCGTCAGAC 60.391 55.000 0.00 0.00 42.95 3.51
4961 7870 2.239654 GTCTGGGGATCATGTGAAGGAA 59.760 50.000 0.00 0.00 0.00 3.36
4979 7888 4.039339 AGGAAGAGCTCATGAGAAGGATT 58.961 43.478 27.04 12.08 0.00 3.01
5006 7915 1.360192 GCTGCACAAAGCTTCGGTT 59.640 52.632 0.00 0.00 45.94 4.44
5033 7942 1.174712 TCTTGTTGCCTGCTGCTTCC 61.175 55.000 0.00 0.00 42.00 3.46
5078 7987 3.869065 TCGGTTGGTCCATAATCTTGTC 58.131 45.455 0.00 0.00 35.57 3.18
5090 7999 7.011857 GTCCATAATCTTGTCCAGAGATTTGTC 59.988 40.741 4.86 0.00 42.30 3.18
5123 8032 4.201950 GCACTATCTCACAATGGCGATTTT 60.202 41.667 0.00 0.00 0.00 1.82
5248 8157 4.537688 AGATCCAGACCTTGAATTCTCCAA 59.462 41.667 7.05 0.00 0.00 3.53
5304 8213 0.535335 TAGACCTGTTCATGACGGCC 59.465 55.000 0.00 0.00 33.01 6.13
5306 8215 0.535335 GACCTGTTCATGACGGCCTA 59.465 55.000 0.00 0.00 33.01 3.93
5391 8300 4.887071 TCAATGGTTGCTGTCAGTACTTTT 59.113 37.500 0.93 0.00 0.00 2.27
5400 8309 5.347635 TGCTGTCAGTACTTTTTGCTATACG 59.652 40.000 0.93 0.00 0.00 3.06
5408 8317 8.817100 CAGTACTTTTTGCTATACGATGAATGA 58.183 33.333 0.00 0.00 0.00 2.57
5437 8348 9.988350 ACTTGATGCTAATAAACTTACAAATCG 57.012 29.630 0.00 0.00 0.00 3.34
5852 8765 1.291877 AAGTGACAAGCCTAAGCGCG 61.292 55.000 0.00 0.00 46.67 6.86
6185 9098 2.376109 TCGTAGGGGCTCTTCTTACTG 58.624 52.381 0.00 0.00 0.00 2.74
6193 9109 1.279271 GCTCTTCTTACTGCTTCCCCA 59.721 52.381 0.00 0.00 0.00 4.96
6275 9191 4.039488 TGCTCATCATTTTTGTTTGCTCCT 59.961 37.500 0.00 0.00 0.00 3.69
6279 9195 3.465871 TCATTTTTGTTTGCTCCTTGCC 58.534 40.909 0.00 0.00 42.00 4.52
6282 9198 1.494960 TTTGTTTGCTCCTTGCCCTT 58.505 45.000 0.00 0.00 42.00 3.95
6346 9262 4.891260 TCAATATGCTGCTCTCTGTATGG 58.109 43.478 0.00 0.00 0.00 2.74
6347 9263 4.346127 TCAATATGCTGCTCTCTGTATGGT 59.654 41.667 0.00 0.00 0.00 3.55
6348 9264 2.616634 ATGCTGCTCTCTGTATGGTG 57.383 50.000 0.00 0.00 0.00 4.17
6359 9275 6.517529 GCTCTCTGTATGGTGGTTATCTAAGG 60.518 46.154 0.00 0.00 0.00 2.69
6379 9295 1.605712 GCATAGGCCTGTAGCTTACCG 60.606 57.143 17.99 0.00 43.05 4.02
6395 9323 4.737055 GCTTACCGGTGAGGAAAGATCTAC 60.737 50.000 26.04 3.30 45.00 2.59
6403 9332 5.425862 GGTGAGGAAAGATCTACTAGGGTTT 59.574 44.000 0.00 0.00 0.00 3.27
6451 9380 7.039313 AGAACAAGATAAAAGGGTTTGTGTC 57.961 36.000 0.00 0.00 32.75 3.67
6454 9383 7.176589 ACAAGATAAAAGGGTTTGTGTCAAA 57.823 32.000 0.00 0.00 31.34 2.69
6455 9384 7.039270 ACAAGATAAAAGGGTTTGTGTCAAAC 58.961 34.615 14.50 14.50 31.34 2.93
6456 9385 6.783708 AGATAAAAGGGTTTGTGTCAAACA 57.216 33.333 21.32 0.00 36.85 2.83
6470 9399 6.856494 GTGTCAAACACTCTCGAATACTAG 57.144 41.667 3.03 0.00 45.27 2.57
6471 9400 5.286558 GTGTCAAACACTCTCGAATACTAGC 59.713 44.000 3.03 0.00 45.27 3.42
6515 9593 6.802608 AGAACATGGATTACAATGATTGCAG 58.197 36.000 4.84 0.00 0.00 4.41
6516 9594 6.379133 AGAACATGGATTACAATGATTGCAGT 59.621 34.615 4.84 0.00 0.00 4.40
6518 9596 7.031226 ACATGGATTACAATGATTGCAGTAC 57.969 36.000 4.84 0.00 0.00 2.73
6538 9616 9.937175 GCAGTACTATATTTTTCATTTGAGGTC 57.063 33.333 0.00 0.00 0.00 3.85
6544 9622 9.655769 CTATATTTTTCATTTGAGGTCGATGTG 57.344 33.333 0.00 0.00 0.00 3.21
6555 9633 1.156736 GTCGATGTGACCCAAAGTGG 58.843 55.000 0.00 0.00 42.04 4.00
6556 9634 0.605319 TCGATGTGACCCAAAGTGGC 60.605 55.000 0.00 0.00 35.79 5.01
6558 9636 1.620822 GATGTGACCCAAAGTGGCTT 58.379 50.000 0.00 0.00 35.79 4.35
6559 9637 1.541588 GATGTGACCCAAAGTGGCTTC 59.458 52.381 0.00 0.00 35.79 3.86
6560 9638 0.550914 TGTGACCCAAAGTGGCTTCT 59.449 50.000 0.00 0.00 35.79 2.85
6562 9640 2.375174 TGTGACCCAAAGTGGCTTCTAT 59.625 45.455 0.00 0.00 35.79 1.98
6564 9642 2.912956 TGACCCAAAGTGGCTTCTATCT 59.087 45.455 0.00 0.00 35.79 1.98
6566 9644 4.534500 TGACCCAAAGTGGCTTCTATCTAA 59.466 41.667 0.00 0.00 35.79 2.10
6568 9646 5.254115 ACCCAAAGTGGCTTCTATCTAAAC 58.746 41.667 0.00 0.00 35.79 2.01
6569 9647 4.640647 CCCAAAGTGGCTTCTATCTAAACC 59.359 45.833 0.00 0.00 35.79 3.27
6570 9648 5.253330 CCAAAGTGGCTTCTATCTAAACCA 58.747 41.667 0.00 0.00 0.00 3.67
6571 9649 5.888161 CCAAAGTGGCTTCTATCTAAACCAT 59.112 40.000 0.00 0.00 0.00 3.55
6572 9650 6.378280 CCAAAGTGGCTTCTATCTAAACCATT 59.622 38.462 0.00 0.00 0.00 3.16
6591 9669 5.128205 CCATTACTGATTCTGCCATCTCAA 58.872 41.667 0.00 0.00 0.00 3.02
6624 9702 3.564027 GGATTCGGCGAACCAGCG 61.564 66.667 26.22 0.00 38.18 5.18
6637 9715 3.309682 CGAACCAGCGTCACATGAATATT 59.690 43.478 0.00 0.00 0.00 1.28
6638 9716 4.591202 GAACCAGCGTCACATGAATATTG 58.409 43.478 0.00 0.00 0.00 1.90
6712 9793 5.928976 TCTTGAATTCAGGAAAGAGTGACA 58.071 37.500 17.14 0.00 0.00 3.58
6715 9796 5.545588 TGAATTCAGGAAAGAGTGACAGAG 58.454 41.667 3.38 0.00 0.00 3.35
6764 9859 2.158900 GGCAGAGCTAATAACAGAGGCA 60.159 50.000 0.00 0.00 0.00 4.75
6902 10003 3.594134 CAATGGTCACTTCTCTCAGGAC 58.406 50.000 0.00 0.00 0.00 3.85
7059 10164 6.019318 GCCTGCAAGCAGAAAATAATTACATG 60.019 38.462 22.76 2.66 46.30 3.21
7089 10201 2.159057 GGGCCATCCAAATGCTTACAAG 60.159 50.000 4.39 0.00 35.00 3.16
7110 10222 0.107081 TATCCCCCGCCATTGTTACG 59.893 55.000 0.00 0.00 0.00 3.18
7131 10244 2.882137 GGATACGAGGAACAGAGAGAGG 59.118 54.545 0.00 0.00 0.00 3.69
7132 10245 3.433882 GGATACGAGGAACAGAGAGAGGA 60.434 52.174 0.00 0.00 0.00 3.71
7133 10246 2.122783 ACGAGGAACAGAGAGAGGAG 57.877 55.000 0.00 0.00 0.00 3.69
7146 10259 2.828520 AGAGAGGAGTTCATTCGAGCAA 59.171 45.455 0.00 0.00 0.00 3.91
7152 10265 4.520492 AGGAGTTCATTCGAGCAAAACATT 59.480 37.500 0.00 0.00 0.00 2.71
7153 10266 5.705441 AGGAGTTCATTCGAGCAAAACATTA 59.295 36.000 0.00 0.00 0.00 1.90
7154 10267 5.795441 GGAGTTCATTCGAGCAAAACATTAC 59.205 40.000 0.00 0.00 0.00 1.89
7155 10268 6.312399 AGTTCATTCGAGCAAAACATTACA 57.688 33.333 0.00 0.00 0.00 2.41
7156 10269 6.913170 AGTTCATTCGAGCAAAACATTACAT 58.087 32.000 0.00 0.00 0.00 2.29
7157 10270 8.039603 AGTTCATTCGAGCAAAACATTACATA 57.960 30.769 0.00 0.00 0.00 2.29
7158 10271 8.677300 AGTTCATTCGAGCAAAACATTACATAT 58.323 29.630 0.00 0.00 0.00 1.78
7159 10272 9.929722 GTTCATTCGAGCAAAACATTACATATA 57.070 29.630 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 3.423154 CGGCACAGGTCGCTTTCC 61.423 66.667 0.00 0.00 34.18 3.13
133 142 8.692710 GGGGAGTAGAAAAGAAAAGAAAAGAAA 58.307 33.333 0.00 0.00 0.00 2.52
134 143 7.837187 TGGGGAGTAGAAAAGAAAAGAAAAGAA 59.163 33.333 0.00 0.00 0.00 2.52
135 144 7.284716 GTGGGGAGTAGAAAAGAAAAGAAAAGA 59.715 37.037 0.00 0.00 0.00 2.52
136 145 7.426410 GTGGGGAGTAGAAAAGAAAAGAAAAG 58.574 38.462 0.00 0.00 0.00 2.27
137 146 6.322969 GGTGGGGAGTAGAAAAGAAAAGAAAA 59.677 38.462 0.00 0.00 0.00 2.29
138 147 5.831525 GGTGGGGAGTAGAAAAGAAAAGAAA 59.168 40.000 0.00 0.00 0.00 2.52
139 148 5.103855 TGGTGGGGAGTAGAAAAGAAAAGAA 60.104 40.000 0.00 0.00 0.00 2.52
140 149 4.414182 TGGTGGGGAGTAGAAAAGAAAAGA 59.586 41.667 0.00 0.00 0.00 2.52
141 150 4.519350 GTGGTGGGGAGTAGAAAAGAAAAG 59.481 45.833 0.00 0.00 0.00 2.27
142 151 4.079672 TGTGGTGGGGAGTAGAAAAGAAAA 60.080 41.667 0.00 0.00 0.00 2.29
143 152 3.460340 TGTGGTGGGGAGTAGAAAAGAAA 59.540 43.478 0.00 0.00 0.00 2.52
144 153 3.050089 TGTGGTGGGGAGTAGAAAAGAA 58.950 45.455 0.00 0.00 0.00 2.52
145 154 2.637872 CTGTGGTGGGGAGTAGAAAAGA 59.362 50.000 0.00 0.00 0.00 2.52
146 155 2.290323 CCTGTGGTGGGGAGTAGAAAAG 60.290 54.545 0.00 0.00 0.00 2.27
147 156 1.702957 CCTGTGGTGGGGAGTAGAAAA 59.297 52.381 0.00 0.00 0.00 2.29
148 157 1.358152 CCTGTGGTGGGGAGTAGAAA 58.642 55.000 0.00 0.00 0.00 2.52
149 158 0.546747 CCCTGTGGTGGGGAGTAGAA 60.547 60.000 0.00 0.00 46.50 2.10
150 159 1.080354 CCCTGTGGTGGGGAGTAGA 59.920 63.158 0.00 0.00 46.50 2.59
151 160 1.080354 TCCCTGTGGTGGGGAGTAG 59.920 63.158 0.00 0.00 46.99 2.57
152 161 3.289408 TCCCTGTGGTGGGGAGTA 58.711 61.111 0.00 0.00 46.99 2.59
158 167 3.072476 CCTCTGTCCCTGTGGTGG 58.928 66.667 0.00 0.00 0.00 4.61
160 169 2.122413 TGCCTCTGTCCCTGTGGT 60.122 61.111 0.00 0.00 0.00 4.16
161 170 2.348998 GTGCCTCTGTCCCTGTGG 59.651 66.667 0.00 0.00 0.00 4.17
168 177 2.740055 CGCCTGTGTGCCTCTGTC 60.740 66.667 0.00 0.00 0.00 3.51
338 373 7.342799 AGGCATAATATTTCCACTGTTTCATGT 59.657 33.333 0.00 0.00 0.00 3.21
339 374 7.719483 AGGCATAATATTTCCACTGTTTCATG 58.281 34.615 0.00 0.00 0.00 3.07
342 379 9.087424 GAAAAGGCATAATATTTCCACTGTTTC 57.913 33.333 0.00 0.50 0.00 2.78
354 391 6.195600 TCGGGTTAGGAAAAGGCATAATAT 57.804 37.500 0.00 0.00 0.00 1.28
355 392 5.633655 TCGGGTTAGGAAAAGGCATAATA 57.366 39.130 0.00 0.00 0.00 0.98
357 394 4.304048 TTCGGGTTAGGAAAAGGCATAA 57.696 40.909 0.00 0.00 0.00 1.90
360 397 2.660670 TTTCGGGTTAGGAAAAGGCA 57.339 45.000 0.00 0.00 30.91 4.75
376 421 2.030457 CCACACGGCGATGATACTTTTC 59.970 50.000 16.62 0.00 0.00 2.29
416 494 2.925724 CAATATGTTAACTCGCCCCCA 58.074 47.619 7.22 0.00 0.00 4.96
418 496 2.572290 AGCAATATGTTAACTCGCCCC 58.428 47.619 7.22 0.00 0.00 5.80
419 497 4.211374 CACTAGCAATATGTTAACTCGCCC 59.789 45.833 7.22 0.00 0.00 6.13
421 499 4.606232 CGCACTAGCAATATGTTAACTCGC 60.606 45.833 7.22 2.59 42.27 5.03
424 502 5.872617 TCAACGCACTAGCAATATGTTAACT 59.127 36.000 7.22 0.00 42.27 2.24
425 503 6.102006 TCAACGCACTAGCAATATGTTAAC 57.898 37.500 0.00 0.00 42.27 2.01
439 541 1.961277 CCCTTCGCTTCAACGCACT 60.961 57.895 0.00 0.00 0.00 4.40
457 559 1.991965 CTCTGCGTCTGCTCTTCTTTC 59.008 52.381 0.00 0.00 43.34 2.62
526 637 1.877637 TGTCAATGACTCAACGTGGG 58.122 50.000 14.97 0.00 33.15 4.61
588 708 1.466856 CTCTGCTCTCTGCTCTCTGT 58.533 55.000 0.00 0.00 43.37 3.41
590 710 0.323633 TGCTCTGCTCTCTGCTCTCT 60.324 55.000 0.00 0.00 43.37 3.10
599 719 2.580276 GCTGCTCTGCTCTGCTCT 59.420 61.111 0.00 0.00 0.00 4.09
600 720 2.886604 CGCTGCTCTGCTCTGCTC 60.887 66.667 0.00 0.00 0.00 4.26
895 1055 3.699894 CTCGCTCAGGCTGGGTGT 61.700 66.667 26.01 0.00 36.09 4.16
966 1130 2.038975 TCCCTCCCTCTCCGTTGG 59.961 66.667 0.00 0.00 0.00 3.77
967 1131 2.060980 CCTCCCTCCCTCTCCGTTG 61.061 68.421 0.00 0.00 0.00 4.10
968 1132 2.364961 CCTCCCTCCCTCTCCGTT 59.635 66.667 0.00 0.00 0.00 4.44
969 1133 3.756783 CCCTCCCTCCCTCTCCGT 61.757 72.222 0.00 0.00 0.00 4.69
989 1153 6.227298 TCATGAACTTCATCTTCTACCTCC 57.773 41.667 0.92 0.00 34.28 4.30
990 1154 6.257630 GCTTCATGAACTTCATCTTCTACCTC 59.742 42.308 3.38 0.00 34.28 3.85
991 1155 6.070309 AGCTTCATGAACTTCATCTTCTACCT 60.070 38.462 3.38 0.00 34.28 3.08
992 1156 6.036953 CAGCTTCATGAACTTCATCTTCTACC 59.963 42.308 3.38 0.00 34.28 3.18
993 1157 6.036953 CCAGCTTCATGAACTTCATCTTCTAC 59.963 42.308 3.38 0.00 34.28 2.59
994 1158 6.111382 CCAGCTTCATGAACTTCATCTTCTA 58.889 40.000 3.38 0.00 34.28 2.10
995 1159 4.942483 CCAGCTTCATGAACTTCATCTTCT 59.058 41.667 3.38 0.00 34.28 2.85
996 1160 4.096081 CCCAGCTTCATGAACTTCATCTTC 59.904 45.833 3.38 0.00 34.28 2.87
1101 1265 2.517650 AGGAAGCAACGCTAGATAGC 57.482 50.000 1.59 1.59 45.62 2.97
1104 1268 1.834263 AGGAAGGAAGCAACGCTAGAT 59.166 47.619 0.00 0.00 38.25 1.98
1124 1304 2.722094 AGACACCAAACAGTTTGAGCA 58.278 42.857 25.08 0.00 43.26 4.26
1278 1486 2.275318 CAGAAGAAAGAGGATGACGGC 58.725 52.381 0.00 0.00 0.00 5.68
1284 1492 1.914798 AGCCAGCAGAAGAAAGAGGAT 59.085 47.619 0.00 0.00 0.00 3.24
1303 1511 0.036010 ATTCTCACCGGAAGCACCAG 60.036 55.000 9.46 0.00 38.90 4.00
1319 1527 6.632035 CGAATAAGCTTGCAAGAATCTCATTC 59.368 38.462 30.39 20.50 39.56 2.67
1320 1528 6.094603 ACGAATAAGCTTGCAAGAATCTCATT 59.905 34.615 30.39 14.69 0.00 2.57
1321 1529 5.587844 ACGAATAAGCTTGCAAGAATCTCAT 59.412 36.000 30.39 6.51 0.00 2.90
1352 1560 1.072505 GGTCTTCCAAAGGGACGCA 59.927 57.895 0.00 0.00 44.89 5.24
1353 1561 0.955919 CTGGTCTTCCAAAGGGACGC 60.956 60.000 0.00 0.00 44.89 5.19
1369 1577 1.539929 CCGCCATTCTAGAAGCTCTGG 60.540 57.143 15.68 15.68 0.00 3.86
1448 1656 2.761208 AGACGGAGAGATTGGTTACTGG 59.239 50.000 0.00 0.00 0.00 4.00
1450 1658 3.025262 GGAGACGGAGAGATTGGTTACT 58.975 50.000 0.00 0.00 0.00 2.24
1451 1659 3.025262 AGGAGACGGAGAGATTGGTTAC 58.975 50.000 0.00 0.00 0.00 2.50
1452 1660 3.288964 GAGGAGACGGAGAGATTGGTTA 58.711 50.000 0.00 0.00 0.00 2.85
1453 1661 2.104170 GAGGAGACGGAGAGATTGGTT 58.896 52.381 0.00 0.00 0.00 3.67
1454 1662 1.770294 GAGGAGACGGAGAGATTGGT 58.230 55.000 0.00 0.00 0.00 3.67
1455 1663 0.665835 CGAGGAGACGGAGAGATTGG 59.334 60.000 0.00 0.00 0.00 3.16
1457 1665 1.440938 CGCGAGGAGACGGAGAGATT 61.441 60.000 0.00 0.00 0.00 2.40
1458 1666 1.890041 CGCGAGGAGACGGAGAGAT 60.890 63.158 0.00 0.00 0.00 2.75
1459 1667 2.511829 CGCGAGGAGACGGAGAGA 60.512 66.667 0.00 0.00 0.00 3.10
1460 1668 4.244802 GCGCGAGGAGACGGAGAG 62.245 72.222 12.10 0.00 0.00 3.20
1465 1673 3.743091 GAAGAGGCGCGAGGAGACG 62.743 68.421 12.10 0.00 0.00 4.18
1466 1674 2.103340 GAAGAGGCGCGAGGAGAC 59.897 66.667 12.10 0.00 0.00 3.36
1467 1675 3.141488 GGAAGAGGCGCGAGGAGA 61.141 66.667 12.10 0.00 0.00 3.71
1468 1676 3.132481 GAGGAAGAGGCGCGAGGAG 62.132 68.421 12.10 0.00 0.00 3.69
1469 1677 2.266816 TAGAGGAAGAGGCGCGAGGA 62.267 60.000 12.10 0.00 0.00 3.71
1470 1678 1.824329 TAGAGGAAGAGGCGCGAGG 60.824 63.158 12.10 0.00 0.00 4.63
1471 1679 1.357334 GTAGAGGAAGAGGCGCGAG 59.643 63.158 12.10 0.00 0.00 5.03
1472 1680 2.119655 GGTAGAGGAAGAGGCGCGA 61.120 63.158 12.10 0.00 0.00 5.87
1473 1681 2.343163 CTGGTAGAGGAAGAGGCGCG 62.343 65.000 0.00 0.00 0.00 6.86
1474 1682 1.324005 ACTGGTAGAGGAAGAGGCGC 61.324 60.000 0.00 0.00 0.00 6.53
1475 1683 1.187087 AACTGGTAGAGGAAGAGGCG 58.813 55.000 0.00 0.00 0.00 5.52
1476 1684 4.162509 ACATAAACTGGTAGAGGAAGAGGC 59.837 45.833 0.00 0.00 0.00 4.70
1477 1685 5.450688 CGACATAAACTGGTAGAGGAAGAGG 60.451 48.000 0.00 0.00 0.00 3.69
1478 1686 5.357314 TCGACATAAACTGGTAGAGGAAGAG 59.643 44.000 0.00 0.00 0.00 2.85
1481 1689 5.014858 ACTCGACATAAACTGGTAGAGGAA 58.985 41.667 0.00 0.00 39.94 3.36
1486 1694 5.121768 CCCAAAACTCGACATAAACTGGTAG 59.878 44.000 0.00 0.00 0.00 3.18
1500 1708 1.535204 AATGCCAGGCCCAAAACTCG 61.535 55.000 9.64 0.00 0.00 4.18
1522 1730 3.532102 AGGGACTAACCAAGATCCAAGT 58.468 45.455 0.00 0.00 41.20 3.16
1538 1746 3.487544 GCATTAGCAATCGAACAAGGGAC 60.488 47.826 0.00 0.00 41.58 4.46
1567 1778 7.148705 CCGTGACTCGAAATGAAACAGTTATTA 60.149 37.037 0.00 0.00 42.86 0.98
1570 1781 4.446385 CCGTGACTCGAAATGAAACAGTTA 59.554 41.667 0.00 0.00 42.86 2.24
1572 1783 2.800544 CCGTGACTCGAAATGAAACAGT 59.199 45.455 0.00 0.00 42.86 3.55
1608 1839 0.110486 TCTGCACTTCCCAAGAACCC 59.890 55.000 0.00 0.00 0.00 4.11
1770 2005 4.080687 AGAAACTCCGTTCTGCTACTAGT 58.919 43.478 0.00 0.00 36.48 2.57
1771 2006 4.439016 GGAGAAACTCCGTTCTGCTACTAG 60.439 50.000 1.97 0.00 41.08 2.57
1772 2007 3.442977 GGAGAAACTCCGTTCTGCTACTA 59.557 47.826 1.97 0.00 41.08 1.82
1851 2086 2.242965 TGCAGGATGAAGACAATGGGAT 59.757 45.455 0.00 0.00 39.69 3.85
1862 2097 1.153369 GGCTAGCGTGCAGGATGAA 60.153 57.895 11.29 0.00 39.69 2.57
1863 2098 2.060383 AGGCTAGCGTGCAGGATGA 61.060 57.895 9.56 0.00 39.69 2.92
1870 2105 1.129326 CGTATAACAGGCTAGCGTGC 58.871 55.000 31.67 17.01 35.48 5.34
1872 2107 1.396653 ACCGTATAACAGGCTAGCGT 58.603 50.000 9.00 6.32 0.00 5.07
1874 2109 2.391879 CGAACCGTATAACAGGCTAGC 58.608 52.381 6.04 6.04 0.00 3.42
1894 2129 0.250166 ACTGCCCGTCACTGTAAACC 60.250 55.000 0.00 0.00 0.00 3.27
1906 2141 2.691409 TTAAATCAGAGGACTGCCCG 57.309 50.000 0.00 0.00 43.17 6.13
1930 2165 7.058023 ACCACAGTACATTACAACAAGAGTA 57.942 36.000 0.00 0.00 0.00 2.59
1952 2201 5.893824 AGACCCAAGGATGAATAAATGAACC 59.106 40.000 0.00 0.00 0.00 3.62
1957 2206 7.840716 TCAAATGAGACCCAAGGATGAATAAAT 59.159 33.333 0.00 0.00 0.00 1.40
1958 2207 7.181361 TCAAATGAGACCCAAGGATGAATAAA 58.819 34.615 0.00 0.00 0.00 1.40
1959 2208 6.730447 TCAAATGAGACCCAAGGATGAATAA 58.270 36.000 0.00 0.00 0.00 1.40
1960 2209 6.325993 TCAAATGAGACCCAAGGATGAATA 57.674 37.500 0.00 0.00 0.00 1.75
1987 2245 4.873827 ACATTTCAAATGAATGCTGGATGC 59.126 37.500 17.30 0.00 43.25 3.91
1988 2246 6.816640 AGAACATTTCAAATGAATGCTGGATG 59.183 34.615 17.30 0.05 33.54 3.51
1989 2247 6.942976 AGAACATTTCAAATGAATGCTGGAT 58.057 32.000 17.30 0.00 33.54 3.41
1990 2248 6.349243 AGAACATTTCAAATGAATGCTGGA 57.651 33.333 17.30 0.00 33.54 3.86
1991 2249 6.425721 ACAAGAACATTTCAAATGAATGCTGG 59.574 34.615 17.30 7.82 33.54 4.85
1992 2250 7.416154 ACAAGAACATTTCAAATGAATGCTG 57.584 32.000 17.30 9.14 33.54 4.41
1993 2251 9.362539 GATACAAGAACATTTCAAATGAATGCT 57.637 29.630 17.30 5.27 33.54 3.79
1994 2252 9.362539 AGATACAAGAACATTTCAAATGAATGC 57.637 29.630 17.30 3.16 33.54 3.56
2001 2259 9.541143 GGGAAAAAGATACAAGAACATTTCAAA 57.459 29.630 0.00 0.00 0.00 2.69
2016 2274 2.389962 CGGACACCGGGAAAAAGATA 57.610 50.000 6.32 0.00 44.15 1.98
2036 2294 4.655647 AGGCAGCCACAGCACTGG 62.656 66.667 15.80 0.00 43.56 4.00
2042 2309 3.359002 GGTGAAAGGCAGCCACAG 58.641 61.111 15.80 0.00 39.07 3.66
2047 2314 1.340017 TGTATGAGGGTGAAAGGCAGC 60.340 52.381 0.00 0.00 44.17 5.25
2048 2315 2.237143 TCTGTATGAGGGTGAAAGGCAG 59.763 50.000 0.00 0.00 0.00 4.85
2049 2316 2.265367 TCTGTATGAGGGTGAAAGGCA 58.735 47.619 0.00 0.00 0.00 4.75
2050 2317 3.567478 ATCTGTATGAGGGTGAAAGGC 57.433 47.619 0.00 0.00 0.00 4.35
2065 2332 3.857052 CAAATGATGCCTTGCAATCTGT 58.143 40.909 0.00 0.00 43.62 3.41
2133 2400 3.365767 GGAGAGAAAACAAGTGCTGCATC 60.366 47.826 5.27 0.00 0.00 3.91
2153 2423 0.973632 TTCCGCACTAGCAAAGAGGA 59.026 50.000 0.00 0.00 42.27 3.71
2301 2577 4.142600 CGGGGAGATGACAATTGTTTTCTC 60.143 45.833 27.39 27.39 36.47 2.87
2324 2600 6.815089 AGGTCTGATCAATGATTAGTGAGAC 58.185 40.000 13.60 11.32 34.00 3.36
2359 2635 5.984725 TGCTGGATTCTTTAGATTAACCGA 58.015 37.500 0.00 0.00 0.00 4.69
2570 5405 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2572 5407 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2573 5408 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2574 5409 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2576 5411 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2577 5412 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2578 5413 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2579 5414 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2580 5415 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2581 5416 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2615 5450 9.357161 TGACCCAACTTTGTACTAATTTTGTAT 57.643 29.630 0.00 0.00 0.00 2.29
2616 5451 8.749026 TGACCCAACTTTGTACTAATTTTGTA 57.251 30.769 0.00 0.00 0.00 2.41
2617 5452 7.648039 TGACCCAACTTTGTACTAATTTTGT 57.352 32.000 0.00 0.00 0.00 2.83
2618 5453 8.576442 AGATGACCCAACTTTGTACTAATTTTG 58.424 33.333 0.00 0.11 0.00 2.44
2619 5454 8.706322 AGATGACCCAACTTTGTACTAATTTT 57.294 30.769 0.00 0.00 0.00 1.82
2620 5455 9.975218 ATAGATGACCCAACTTTGTACTAATTT 57.025 29.630 0.00 0.00 0.00 1.82
2621 5456 9.975218 AATAGATGACCCAACTTTGTACTAATT 57.025 29.630 0.00 0.00 0.00 1.40
2622 5457 9.975218 AAATAGATGACCCAACTTTGTACTAAT 57.025 29.630 0.00 0.00 0.00 1.73
2623 5458 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2625 5460 9.449719 CTAAAATAGATGACCCAACTTTGTACT 57.550 33.333 0.00 0.00 0.00 2.73
2626 5461 9.444600 TCTAAAATAGATGACCCAACTTTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
2628 5463 8.934023 TTCTAAAATAGATGACCCAACTTTGT 57.066 30.769 0.00 0.00 34.22 2.83
2629 5464 9.793252 CATTCTAAAATAGATGACCCAACTTTG 57.207 33.333 0.00 0.00 34.22 2.77
2630 5465 8.971073 CCATTCTAAAATAGATGACCCAACTTT 58.029 33.333 0.00 0.00 34.22 2.66
2631 5466 8.336235 TCCATTCTAAAATAGATGACCCAACTT 58.664 33.333 0.00 0.00 34.22 2.66
2632 5467 7.872138 TCCATTCTAAAATAGATGACCCAACT 58.128 34.615 0.00 0.00 34.22 3.16
2633 5468 7.229506 CCTCCATTCTAAAATAGATGACCCAAC 59.770 40.741 0.00 0.00 34.22 3.77
2634 5469 7.290061 CCTCCATTCTAAAATAGATGACCCAA 58.710 38.462 0.00 0.00 34.22 4.12
2635 5470 6.183361 CCCTCCATTCTAAAATAGATGACCCA 60.183 42.308 0.00 0.00 34.22 4.51
2636 5471 6.044404 TCCCTCCATTCTAAAATAGATGACCC 59.956 42.308 0.00 0.00 34.22 4.46
2637 5472 7.079451 TCCCTCCATTCTAAAATAGATGACC 57.921 40.000 0.00 0.00 34.22 4.02
2638 5473 7.740805 ACTCCCTCCATTCTAAAATAGATGAC 58.259 38.462 0.00 0.00 34.22 3.06
2639 5474 7.937700 ACTCCCTCCATTCTAAAATAGATGA 57.062 36.000 0.00 0.00 34.22 2.92
2640 5475 8.875168 AGTACTCCCTCCATTCTAAAATAGATG 58.125 37.037 0.00 0.00 34.22 2.90
2642 5477 9.947189 TTAGTACTCCCTCCATTCTAAAATAGA 57.053 33.333 0.00 0.00 0.00 1.98
2645 5480 9.225682 TCATTAGTACTCCCTCCATTCTAAAAT 57.774 33.333 0.00 0.00 0.00 1.82
2646 5481 8.618240 TCATTAGTACTCCCTCCATTCTAAAA 57.382 34.615 0.00 0.00 0.00 1.52
2647 5482 8.798975 ATCATTAGTACTCCCTCCATTCTAAA 57.201 34.615 0.00 0.00 0.00 1.85
2648 5483 8.798975 AATCATTAGTACTCCCTCCATTCTAA 57.201 34.615 0.00 0.00 0.00 2.10
2650 5485 8.980832 ATAATCATTAGTACTCCCTCCATTCT 57.019 34.615 0.00 0.00 0.00 2.40
2752 5592 2.158623 TCAGCAAAGGGAAGAAGCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
2852 5717 4.081642 GCTGTAAAGACCTCCACTACATCA 60.082 45.833 0.00 0.00 0.00 3.07
2915 5780 2.685388 CCATTGACTAGTCGCTCTCTCA 59.315 50.000 17.85 0.00 0.00 3.27
2959 5824 0.179084 CGATTACACATGCCCGACCT 60.179 55.000 0.00 0.00 0.00 3.85
3040 5907 5.727791 GCAACATGTATCGATTGTGGAGAAC 60.728 44.000 1.71 0.00 0.00 3.01
3052 5919 6.846870 ATTTTGTTTACGCAACATGTATCG 57.153 33.333 15.37 15.37 45.17 2.92
3085 5952 1.226018 GGCTTTCACCGCGAAATCG 60.226 57.895 8.23 0.00 42.69 3.34
3101 5968 3.240302 TCCTACAAGGCTCCTATAAGGC 58.760 50.000 0.00 0.00 41.92 4.35
3203 6089 9.710900 TGAGCATATCATATTACGAAACAGAAT 57.289 29.630 0.00 0.00 31.12 2.40
3243 6129 1.639298 GAGACCACCAATCTGCACGC 61.639 60.000 0.00 0.00 0.00 5.34
3592 6478 4.635765 GTGTTGATAATCAGCTTGGCAGTA 59.364 41.667 0.00 0.00 0.00 2.74
3631 6517 3.755378 GGTTAGATTGCCTATGCCATCAG 59.245 47.826 6.80 0.00 41.03 2.90
3639 6525 7.716799 TGATTTGTTTGGTTAGATTGCCTAT 57.283 32.000 0.00 0.00 0.00 2.57
3778 6686 6.000891 TCAACACACTTTGATAGCACAATC 57.999 37.500 0.00 0.00 30.29 2.67
3779 6687 6.389830 TTCAACACACTTTGATAGCACAAT 57.610 33.333 0.00 0.00 35.42 2.71
3787 6695 9.301153 GTTTTACTTGATTCAACACACTTTGAT 57.699 29.630 0.00 0.00 35.42 2.57
3793 6701 7.012989 AGGTAGGTTTTACTTGATTCAACACAC 59.987 37.037 0.00 0.00 0.00 3.82
3827 6735 5.503520 GCACCAATATTAAGTACCGAAGTGC 60.504 44.000 0.00 0.00 38.91 4.40
3834 6742 7.555195 AGTTTACCAGCACCAATATTAAGTACC 59.445 37.037 0.00 0.00 0.00 3.34
3864 6772 3.954258 GCTAACTGATGCCCTGGTAAAAT 59.046 43.478 0.00 0.00 0.00 1.82
4013 6921 4.318689 CGGTGACAAAATGCCAAACAATTC 60.319 41.667 0.00 0.00 0.00 2.17
4016 6924 2.166459 TCGGTGACAAAATGCCAAACAA 59.834 40.909 0.00 0.00 0.00 2.83
4043 6952 4.336433 ACATAATGCAGCACTGGTGATTAC 59.664 41.667 12.50 0.00 32.22 1.89
4073 6982 8.948631 TGAGTTATCACCAGCTAGAAAATAAG 57.051 34.615 0.00 0.00 0.00 1.73
4145 7054 3.812609 ACTGCATACGACAATCAACACAA 59.187 39.130 0.00 0.00 0.00 3.33
4158 7067 2.009774 CAGAAGGGGAAACTGCATACG 58.990 52.381 0.00 0.00 0.00 3.06
4468 7377 2.418197 GGTAATAGTGCCTTCGTGCTCA 60.418 50.000 0.00 0.00 0.00 4.26
4526 7435 3.159472 TGTCTTTGAAGCAATGGCATCT 58.841 40.909 0.00 0.00 44.61 2.90
4529 7438 3.057104 CAGATGTCTTTGAAGCAATGGCA 60.057 43.478 0.00 0.00 44.61 4.92
4547 7456 3.377253 ACATTTGCAGGATCCACAGAT 57.623 42.857 15.82 9.60 34.57 2.90
4604 7513 4.201950 GCCGACTCAATTATTTCAGTGCAT 60.202 41.667 0.00 0.00 0.00 3.96
4623 7532 0.250553 ACCGATGTTTTTCCTGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
4652 7561 1.606889 GTCCTCGACCCACCAGTCT 60.607 63.158 0.00 0.00 34.46 3.24
4664 7573 2.766313 TCCAATTCACACAAGTCCTCG 58.234 47.619 0.00 0.00 0.00 4.63
4961 7870 6.407979 GGAAACTAATCCTTCTCATGAGCTCT 60.408 42.308 18.36 0.00 36.50 4.09
4979 7888 1.608590 GCTTTGTGCAGCTGGAAACTA 59.391 47.619 17.12 0.00 42.31 2.24
5006 7915 2.573462 AGCAGGCAACAAGAGATCCTTA 59.427 45.455 0.00 0.00 41.41 2.69
5045 7954 2.164219 GACCAACCGAACATCATGCATT 59.836 45.455 0.00 0.00 0.00 3.56
5078 7987 2.807967 TGTTCTTGCGACAAATCTCTGG 59.192 45.455 0.00 0.00 0.00 3.86
5090 7999 2.346847 GTGAGATAGTGCTGTTCTTGCG 59.653 50.000 0.00 0.00 0.00 4.85
5103 8012 5.490139 ACAAAATCGCCATTGTGAGATAG 57.510 39.130 0.77 0.00 38.29 2.08
5105 8014 3.181507 CGACAAAATCGCCATTGTGAGAT 60.182 43.478 0.77 0.00 45.52 2.75
5123 8032 7.099120 TCATTTTCTCATCAGATTTCTCGACA 58.901 34.615 0.00 0.00 0.00 4.35
5213 8122 1.406898 TCTGGATCTGCAGCTACTTCG 59.593 52.381 9.47 0.00 0.00 3.79
5248 8157 3.427233 CGCCGTAGCTAGTTCTACAAAGT 60.427 47.826 0.00 0.00 39.01 2.66
5391 8300 6.816140 TCAAGTGTTCATTCATCGTATAGCAA 59.184 34.615 0.00 0.00 0.00 3.91
5852 8765 1.826487 GTCCTCGCCCTCTCCTCTC 60.826 68.421 0.00 0.00 0.00 3.20
6167 9080 2.112190 AGCAGTAAGAAGAGCCCCTAC 58.888 52.381 0.00 0.00 0.00 3.18
6185 9098 5.468540 AAACTAAAACAAGATGGGGAAGC 57.531 39.130 0.00 0.00 0.00 3.86
6193 9109 7.597288 ACCCAAAGCTAAACTAAAACAAGAT 57.403 32.000 0.00 0.00 0.00 2.40
6275 9191 3.507162 TCTCTTCATTGACAAGGGCAA 57.493 42.857 0.00 0.00 0.00 4.52
6279 9195 8.733458 TCACATATTTTCTCTTCATTGACAAGG 58.267 33.333 0.00 0.00 0.00 3.61
6282 9198 7.337689 CCCTCACATATTTTCTCTTCATTGACA 59.662 37.037 0.00 0.00 0.00 3.58
6359 9275 1.605712 CGGTAAGCTACAGGCCTATGC 60.606 57.143 3.98 10.54 43.05 3.14
6368 9284 1.927487 TTCCTCACCGGTAAGCTACA 58.073 50.000 6.87 0.00 0.00 2.74
6379 9295 4.548669 ACCCTAGTAGATCTTTCCTCACC 58.451 47.826 0.00 0.00 0.00 4.02
6395 9323 6.712547 ACATTTCAGAGAAGAACAAACCCTAG 59.287 38.462 0.00 0.00 0.00 3.02
6403 9332 9.559732 TCTTCATAAACATTTCAGAGAAGAACA 57.440 29.630 0.00 0.00 37.77 3.18
6451 9380 6.036470 TGATGCTAGTATTCGAGAGTGTTTG 58.964 40.000 0.00 0.00 0.00 2.93
6454 9383 5.126779 TCTGATGCTAGTATTCGAGAGTGT 58.873 41.667 0.00 0.00 0.00 3.55
6455 9384 5.681337 TCTGATGCTAGTATTCGAGAGTG 57.319 43.478 0.00 0.00 0.00 3.51
6456 9385 6.676950 CAATCTGATGCTAGTATTCGAGAGT 58.323 40.000 0.00 0.00 0.00 3.24
6457 9386 5.572511 GCAATCTGATGCTAGTATTCGAGAG 59.427 44.000 0.00 0.00 43.06 3.20
6458 9387 5.010012 TGCAATCTGATGCTAGTATTCGAGA 59.990 40.000 11.45 0.00 46.54 4.04
6459 9388 5.225642 TGCAATCTGATGCTAGTATTCGAG 58.774 41.667 11.45 0.00 46.54 4.04
6461 9390 4.388165 CCTGCAATCTGATGCTAGTATTCG 59.612 45.833 11.45 0.00 46.54 3.34
6462 9391 5.407995 GTCCTGCAATCTGATGCTAGTATTC 59.592 44.000 11.45 0.00 46.54 1.75
6463 9392 5.163269 TGTCCTGCAATCTGATGCTAGTATT 60.163 40.000 11.45 0.00 46.54 1.89
6464 9393 4.346127 TGTCCTGCAATCTGATGCTAGTAT 59.654 41.667 0.00 0.00 46.54 2.12
6465 9394 3.706086 TGTCCTGCAATCTGATGCTAGTA 59.294 43.478 11.45 0.00 46.54 1.82
6466 9395 2.502947 TGTCCTGCAATCTGATGCTAGT 59.497 45.455 11.45 0.00 46.54 2.57
6467 9396 2.871022 GTGTCCTGCAATCTGATGCTAG 59.129 50.000 11.45 0.00 46.54 3.42
6469 9398 1.003928 TGTGTCCTGCAATCTGATGCT 59.996 47.619 11.45 0.00 46.54 3.79
6470 9399 1.456296 TGTGTCCTGCAATCTGATGC 58.544 50.000 0.00 0.00 46.58 3.91
6471 9400 3.754850 TCTTTGTGTCCTGCAATCTGATG 59.245 43.478 0.00 0.00 0.00 3.07
6518 9596 9.655769 CACATCGACCTCAAATGAAAAATATAG 57.344 33.333 0.00 0.00 0.00 1.31
6538 9616 0.606401 AGCCACTTTGGGTCACATCG 60.606 55.000 0.00 0.00 46.99 3.84
6551 9629 7.125811 TCAGTAATGGTTTAGATAGAAGCCACT 59.874 37.037 0.00 0.00 41.78 4.00
6552 9630 7.272978 TCAGTAATGGTTTAGATAGAAGCCAC 58.727 38.462 0.00 0.00 41.78 5.01
6553 9631 7.432148 TCAGTAATGGTTTAGATAGAAGCCA 57.568 36.000 0.00 0.00 42.95 4.75
6555 9633 9.771534 AGAATCAGTAATGGTTTAGATAGAAGC 57.228 33.333 0.00 0.00 0.00 3.86
6558 9636 8.150945 GGCAGAATCAGTAATGGTTTAGATAGA 58.849 37.037 0.00 0.00 0.00 1.98
6559 9637 7.933577 TGGCAGAATCAGTAATGGTTTAGATAG 59.066 37.037 0.00 0.00 0.00 2.08
6560 9638 7.801104 TGGCAGAATCAGTAATGGTTTAGATA 58.199 34.615 0.00 0.00 0.00 1.98
6562 9640 6.061022 TGGCAGAATCAGTAATGGTTTAGA 57.939 37.500 0.00 0.00 0.00 2.10
6564 9642 6.662755 AGATGGCAGAATCAGTAATGGTTTA 58.337 36.000 0.00 0.00 0.00 2.01
6566 9644 5.121380 AGATGGCAGAATCAGTAATGGTT 57.879 39.130 0.00 0.00 0.00 3.67
6568 9646 4.711399 TGAGATGGCAGAATCAGTAATGG 58.289 43.478 0.00 0.00 0.00 3.16
6569 9647 6.688637 TTTGAGATGGCAGAATCAGTAATG 57.311 37.500 0.00 0.00 0.00 1.90
6570 9648 7.058525 TGATTTGAGATGGCAGAATCAGTAAT 58.941 34.615 0.00 0.00 33.26 1.89
6571 9649 6.417258 TGATTTGAGATGGCAGAATCAGTAA 58.583 36.000 0.00 0.00 33.26 2.24
6572 9650 5.993055 TGATTTGAGATGGCAGAATCAGTA 58.007 37.500 0.00 0.00 33.26 2.74
6591 9669 5.393461 GCCGAATCCTGAAAACATTCTGATT 60.393 40.000 0.00 6.61 0.00 2.57
6637 9715 8.366401 TGCAGAAAGATTGATTGGAAAATAACA 58.634 29.630 0.00 0.00 0.00 2.41
6638 9716 8.761575 TGCAGAAAGATTGATTGGAAAATAAC 57.238 30.769 0.00 0.00 0.00 1.89
6712 9793 4.792068 TCTGAATTTTGGGTTGTGTCTCT 58.208 39.130 0.00 0.00 0.00 3.10
6715 9796 5.452078 TCATCTGAATTTTGGGTTGTGTC 57.548 39.130 0.00 0.00 0.00 3.67
6764 9859 6.704493 TGACAAAACTACTCGCAAGTTTATCT 59.296 34.615 9.15 0.00 44.35 1.98
6902 10003 1.882198 CTGTAATGGAAACGCTTGCG 58.118 50.000 13.70 13.70 0.00 4.85
7059 10164 2.307153 TGGATGGCCCAGACTAACC 58.693 57.895 0.00 0.00 40.82 2.85
7110 10222 2.882137 CCTCTCTCTGTTCCTCGTATCC 59.118 54.545 0.00 0.00 0.00 2.59
7131 10244 6.370593 TGTAATGTTTTGCTCGAATGAACTC 58.629 36.000 0.00 0.00 0.00 3.01
7132 10245 6.312399 TGTAATGTTTTGCTCGAATGAACT 57.688 33.333 0.00 0.00 0.00 3.01
7133 10246 8.841444 ATATGTAATGTTTTGCTCGAATGAAC 57.159 30.769 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.