Multiple sequence alignment - TraesCS5D01G230500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G230500 chr5D 100.000 3508 0 0 2652 6159 337526966 337530473 0.000000e+00 6479.0
1 TraesCS5D01G230500 chr5D 100.000 2165 0 0 1 2165 337524315 337526479 0.000000e+00 3999.0
2 TraesCS5D01G230500 chr5B 92.314 3461 140 48 2749 6151 396161914 396165306 0.000000e+00 4802.0
3 TraesCS5D01G230500 chr5B 89.234 1096 50 32 882 1926 396160247 396161325 0.000000e+00 1308.0
4 TraesCS5D01G230500 chr5B 87.293 543 39 13 193 724 396154146 396154669 1.480000e-165 593.0
5 TraesCS5D01G230500 chr5B 91.160 181 6 7 1985 2165 396161482 396161652 2.870000e-58 237.0
6 TraesCS5D01G230500 chr5B 100.000 39 0 0 2653 2691 396161786 396161824 8.560000e-09 73.1
7 TraesCS5D01G230500 chr5A 89.978 2295 104 51 3445 5646 438788888 438791149 0.000000e+00 2848.0
8 TraesCS5D01G230500 chr5A 83.922 1275 63 56 728 1901 438786628 438787861 0.000000e+00 1088.0
9 TraesCS5D01G230500 chr5A 88.618 492 25 12 2720 3189 438788265 438788747 2.490000e-158 569.0
10 TraesCS5D01G230500 chr5A 93.277 238 11 2 193 425 438786006 438786243 4.570000e-91 346.0
11 TraesCS5D01G230500 chr5A 85.714 308 23 14 430 724 438786283 438786582 7.760000e-79 305.0
12 TraesCS5D01G230500 chr5A 92.202 218 14 3 1949 2165 438787873 438788088 7.760000e-79 305.0
13 TraesCS5D01G230500 chr5A 81.683 202 33 3 5877 6076 379830071 379830270 1.370000e-36 165.0
14 TraesCS5D01G230500 chr7D 83.710 884 123 20 4289 5160 620251693 620252567 0.000000e+00 815.0
15 TraesCS5D01G230500 chr7D 79.775 445 73 15 1000 1431 620248524 620248964 2.160000e-79 307.0
16 TraesCS5D01G230500 chr7D 91.837 196 13 3 4 196 10011873 10012068 2.830000e-68 270.0
17 TraesCS5D01G230500 chr7D 82.237 152 24 3 5772 5921 79297682 79297832 1.800000e-25 128.0
18 TraesCS5D01G230500 chr7A 83.333 882 130 16 4289 5160 714673654 714672780 0.000000e+00 798.0
19 TraesCS5D01G230500 chr7A 80.813 443 69 13 1000 1431 714677913 714677476 3.560000e-87 333.0
20 TraesCS5D01G230500 chr7A 89.796 196 17 3 4 196 171285076 171285271 1.330000e-61 248.0
21 TraesCS5D01G230500 chr7A 80.833 120 13 9 5616 5734 492069969 492070079 1.100000e-12 86.1
22 TraesCS5D01G230500 chr7B 82.540 882 137 15 4289 5160 715999141 716000015 0.000000e+00 760.0
23 TraesCS5D01G230500 chr7B 80.952 441 63 17 1000 1431 715996608 715997036 4.600000e-86 329.0
24 TraesCS5D01G230500 chr1A 95.025 201 10 0 4703 4903 26844268 26844468 3.580000e-82 316.0
25 TraesCS5D01G230500 chr1A 89.394 198 17 4 4 198 476977172 476976976 4.770000e-61 246.0
26 TraesCS5D01G230500 chr6A 94.527 201 11 0 4703 4903 610327820 610328020 1.670000e-80 311.0
27 TraesCS5D01G230500 chr6A 89.950 199 17 3 5 200 600699286 600699088 2.850000e-63 254.0
28 TraesCS5D01G230500 chr6A 85.714 70 9 1 4965 5033 439295612 439295543 8.560000e-09 73.1
29 TraesCS5D01G230500 chr3D 94.949 198 10 0 4706 4903 18639031 18638834 1.670000e-80 311.0
30 TraesCS5D01G230500 chr2D 94.527 201 11 0 4703 4903 133790543 133790743 1.670000e-80 311.0
31 TraesCS5D01G230500 chr2D 84.314 306 43 4 5772 6076 645729034 645729335 1.680000e-75 294.0
32 TraesCS5D01G230500 chr2D 90.816 196 14 4 4 196 364977026 364977220 6.120000e-65 259.0
33 TraesCS5D01G230500 chr2D 90.816 196 15 3 4 196 391826996 391826801 6.120000e-65 259.0
34 TraesCS5D01G230500 chr4D 83.871 310 44 5 5769 6076 402524510 402524205 2.170000e-74 291.0
35 TraesCS5D01G230500 chr2B 83.557 298 44 4 5772 6068 737765736 737766029 2.190000e-69 274.0
36 TraesCS5D01G230500 chr2B 83.557 298 44 4 5772 6068 737787635 737787928 2.190000e-69 274.0
37 TraesCS5D01G230500 chr4A 89.447 199 17 4 4 199 537958410 537958213 1.330000e-61 248.0
38 TraesCS5D01G230500 chr4A 89.000 200 19 3 4 200 319198076 319197877 1.710000e-60 244.0
39 TraesCS5D01G230500 chr3A 89.394 198 18 3 4 199 642706872 642706676 4.770000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G230500 chr5D 337524315 337530473 6158 False 5239.000000 6479 100.000000 1 6159 2 chr5D.!!$F1 6158
1 TraesCS5D01G230500 chr5B 396160247 396165306 5059 False 1605.025000 4802 93.177000 882 6151 4 chr5B.!!$F2 5269
2 TraesCS5D01G230500 chr5B 396154146 396154669 523 False 593.000000 593 87.293000 193 724 1 chr5B.!!$F1 531
3 TraesCS5D01G230500 chr5A 438786006 438791149 5143 False 910.166667 2848 88.951833 193 5646 6 chr5A.!!$F2 5453
4 TraesCS5D01G230500 chr7D 620248524 620252567 4043 False 561.000000 815 81.742500 1000 5160 2 chr7D.!!$F3 4160
5 TraesCS5D01G230500 chr7A 714672780 714677913 5133 True 565.500000 798 82.073000 1000 5160 2 chr7A.!!$R1 4160
6 TraesCS5D01G230500 chr7B 715996608 716000015 3407 False 544.500000 760 81.746000 1000 5160 2 chr7B.!!$F1 4160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 1088 0.030638 CCGAACACACAAGCAAAGGG 59.969 55.0 0.00 0.00 0.0 3.95 F
983 1094 0.178990 ACACAAGCAAAGGGAGGGAC 60.179 55.0 0.00 0.00 0.0 4.46 F
2959 4233 0.106217 ATCAATTCCCCGGGCGAAAT 60.106 50.0 23.06 15.77 0.0 2.17 F
3536 4848 0.721718 GAGGCTTGTTTGATCGTCCG 59.278 55.0 0.00 0.00 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2959 4233 0.261991 AAGATCAGAGGCCCCGAGTA 59.738 55.000 0.00 0.0 0.00 2.59 R
2969 4243 2.479389 GGAGCGACAGTCAAGATCAGAG 60.479 54.545 0.41 0.0 0.00 3.35 R
3904 5229 0.179936 AGCTTCCAGGCAGCTATCAC 59.820 55.000 12.59 0.0 46.18 3.06 R
5418 9791 0.179119 GTGCAGATGATGGCAAAGGC 60.179 55.000 0.00 0.0 42.45 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.072088 GAGGCGCACGTCCGTTTG 62.072 66.667 10.83 0.00 0.00 2.93
31 32 4.659874 GCGCACGTCCGTTTGGTG 62.660 66.667 0.30 0.00 36.30 4.17
32 33 3.266376 CGCACGTCCGTTTGGTGT 61.266 61.111 0.00 0.00 36.30 4.16
33 34 2.629763 GCACGTCCGTTTGGTGTC 59.370 61.111 0.00 0.00 36.30 3.67
34 35 2.888998 GCACGTCCGTTTGGTGTCC 61.889 63.158 0.00 0.00 36.30 4.02
35 36 1.227438 CACGTCCGTTTGGTGTCCT 60.227 57.895 0.00 0.00 36.30 3.85
36 37 1.068585 ACGTCCGTTTGGTGTCCTC 59.931 57.895 0.00 0.00 36.30 3.71
37 38 2.019951 CGTCCGTTTGGTGTCCTCG 61.020 63.158 0.00 0.00 36.30 4.63
38 39 2.029964 TCCGTTTGGTGTCCTCGC 59.970 61.111 0.00 0.00 36.30 5.03
39 40 3.411351 CCGTTTGGTGTCCTCGCG 61.411 66.667 0.00 0.00 0.00 5.87
40 41 2.355363 CGTTTGGTGTCCTCGCGA 60.355 61.111 9.26 9.26 0.00 5.87
41 42 2.654912 CGTTTGGTGTCCTCGCGAC 61.655 63.158 3.71 0.00 42.33 5.19
42 43 2.029964 TTTGGTGTCCTCGCGACC 59.970 61.111 3.71 5.71 41.18 4.79
43 44 3.524648 TTTGGTGTCCTCGCGACCC 62.525 63.158 3.71 0.55 41.18 4.46
45 46 3.998672 GGTGTCCTCGCGACCCAA 61.999 66.667 3.71 0.00 41.18 4.12
46 47 2.029964 GTGTCCTCGCGACCCAAA 59.970 61.111 3.71 0.00 41.18 3.28
47 48 2.029964 TGTCCTCGCGACCCAAAC 59.970 61.111 3.71 0.00 41.18 2.93
48 49 2.741211 GTCCTCGCGACCCAAACC 60.741 66.667 3.71 0.00 35.23 3.27
49 50 4.011517 TCCTCGCGACCCAAACCC 62.012 66.667 3.71 0.00 0.00 4.11
51 52 4.675029 CTCGCGACCCAAACCCGT 62.675 66.667 3.71 0.00 0.00 5.28
52 53 4.668118 TCGCGACCCAAACCCGTC 62.668 66.667 3.71 0.00 0.00 4.79
55 56 4.973055 CGACCCAAACCCGTCGCA 62.973 66.667 0.00 0.00 44.54 5.10
56 57 2.592287 GACCCAAACCCGTCGCAA 60.592 61.111 0.00 0.00 0.00 4.85
57 58 2.593436 ACCCAAACCCGTCGCAAG 60.593 61.111 0.00 0.00 0.00 4.01
58 59 2.593436 CCCAAACCCGTCGCAAGT 60.593 61.111 0.00 0.00 39.48 3.16
59 60 2.190841 CCCAAACCCGTCGCAAGTT 61.191 57.895 0.00 0.00 39.48 2.66
60 61 1.730451 CCCAAACCCGTCGCAAGTTT 61.730 55.000 1.77 1.77 39.48 2.66
61 62 0.593773 CCAAACCCGTCGCAAGTTTG 60.594 55.000 18.94 18.94 46.28 2.93
70 71 4.607024 GCAAGTTTGCGCTCGAAA 57.393 50.000 9.73 0.00 45.11 3.46
71 72 3.092081 GCAAGTTTGCGCTCGAAAT 57.908 47.368 9.73 0.00 45.11 2.17
72 73 0.704551 GCAAGTTTGCGCTCGAAATG 59.295 50.000 9.73 1.98 45.11 2.32
73 74 1.330306 CAAGTTTGCGCTCGAAATGG 58.670 50.000 9.73 0.00 0.00 3.16
74 75 0.240945 AAGTTTGCGCTCGAAATGGG 59.759 50.000 9.73 0.00 0.00 4.00
75 76 0.889186 AGTTTGCGCTCGAAATGGGT 60.889 50.000 9.73 0.00 0.00 4.51
76 77 0.454452 GTTTGCGCTCGAAATGGGTC 60.454 55.000 9.73 0.00 0.00 4.46
77 78 1.906994 TTTGCGCTCGAAATGGGTCG 61.907 55.000 9.73 0.00 42.48 4.79
78 79 3.564027 GCGCTCGAAATGGGTCGG 61.564 66.667 0.00 0.00 41.43 4.79
79 80 3.564027 CGCTCGAAATGGGTCGGC 61.564 66.667 0.00 0.00 41.43 5.54
80 81 3.202706 GCTCGAAATGGGTCGGCC 61.203 66.667 0.00 0.00 41.43 6.13
90 91 4.629523 GGTCGGCCCGGACACAAA 62.630 66.667 0.73 0.00 38.70 2.83
91 92 2.592287 GTCGGCCCGGACACAAAA 60.592 61.111 0.73 0.00 36.91 2.44
92 93 2.592287 TCGGCCCGGACACAAAAC 60.592 61.111 0.73 0.00 0.00 2.43
93 94 2.902846 CGGCCCGGACACAAAACA 60.903 61.111 0.73 0.00 0.00 2.83
94 95 2.725641 GGCCCGGACACAAAACAC 59.274 61.111 0.73 0.00 0.00 3.32
95 96 2.122167 GGCCCGGACACAAAACACA 61.122 57.895 0.73 0.00 0.00 3.72
96 97 1.065109 GCCCGGACACAAAACACAC 59.935 57.895 0.73 0.00 0.00 3.82
97 98 1.731093 CCCGGACACAAAACACACC 59.269 57.895 0.73 0.00 0.00 4.16
98 99 1.032657 CCCGGACACAAAACACACCA 61.033 55.000 0.73 0.00 0.00 4.17
99 100 0.380378 CCGGACACAAAACACACCAG 59.620 55.000 0.00 0.00 0.00 4.00
100 101 1.374560 CGGACACAAAACACACCAGA 58.625 50.000 0.00 0.00 0.00 3.86
101 102 1.946768 CGGACACAAAACACACCAGAT 59.053 47.619 0.00 0.00 0.00 2.90
102 103 2.286950 CGGACACAAAACACACCAGATG 60.287 50.000 0.00 0.00 0.00 2.90
103 104 2.948979 GGACACAAAACACACCAGATGA 59.051 45.455 0.00 0.00 0.00 2.92
104 105 3.003689 GGACACAAAACACACCAGATGAG 59.996 47.826 0.00 0.00 0.00 2.90
105 106 3.620488 ACACAAAACACACCAGATGAGT 58.380 40.909 0.00 0.00 32.92 3.41
106 107 3.627577 ACACAAAACACACCAGATGAGTC 59.372 43.478 0.00 0.00 29.85 3.36
107 108 3.003689 CACAAAACACACCAGATGAGTCC 59.996 47.826 0.00 0.00 29.85 3.85
108 109 2.169832 AAACACACCAGATGAGTCCG 57.830 50.000 0.00 0.00 29.85 4.79
109 110 0.321671 AACACACCAGATGAGTCCGG 59.678 55.000 0.00 0.00 29.85 5.14
110 111 0.541998 ACACACCAGATGAGTCCGGA 60.542 55.000 0.00 0.00 0.00 5.14
111 112 0.108615 CACACCAGATGAGTCCGGAC 60.109 60.000 27.67 27.67 0.00 4.79
112 113 1.258445 ACACCAGATGAGTCCGGACC 61.258 60.000 30.82 21.56 0.00 4.46
113 114 2.052690 ACCAGATGAGTCCGGACCG 61.053 63.158 30.82 6.99 0.00 4.79
114 115 2.052690 CCAGATGAGTCCGGACCGT 61.053 63.158 30.82 22.08 0.00 4.83
115 116 1.433879 CAGATGAGTCCGGACCGTC 59.566 63.158 30.82 27.72 0.00 4.79
116 117 2.113433 AGATGAGTCCGGACCGTCG 61.113 63.158 30.82 0.00 0.00 5.12
117 118 3.753070 GATGAGTCCGGACCGTCGC 62.753 68.421 30.82 14.47 0.00 5.19
137 138 3.423154 GCTGGGCCGTCTCGTTTG 61.423 66.667 0.00 0.00 0.00 2.93
138 139 2.030562 CTGGGCCGTCTCGTTTGT 59.969 61.111 0.00 0.00 0.00 2.83
139 140 2.027625 CTGGGCCGTCTCGTTTGTC 61.028 63.158 0.00 0.00 0.00 3.18
140 141 2.741211 GGGCCGTCTCGTTTGTCC 60.741 66.667 0.00 0.00 0.00 4.02
141 142 3.110178 GGCCGTCTCGTTTGTCCG 61.110 66.667 0.00 0.00 0.00 4.79
142 143 2.355481 GCCGTCTCGTTTGTCCGT 60.355 61.111 0.00 0.00 0.00 4.69
143 144 1.952635 GCCGTCTCGTTTGTCCGTT 60.953 57.895 0.00 0.00 0.00 4.44
144 145 1.493134 GCCGTCTCGTTTGTCCGTTT 61.493 55.000 0.00 0.00 0.00 3.60
145 146 0.932399 CCGTCTCGTTTGTCCGTTTT 59.068 50.000 0.00 0.00 0.00 2.43
146 147 2.126467 CCGTCTCGTTTGTCCGTTTTA 58.874 47.619 0.00 0.00 0.00 1.52
147 148 2.097250 CCGTCTCGTTTGTCCGTTTTAC 60.097 50.000 0.00 0.00 0.00 2.01
148 149 2.097250 CGTCTCGTTTGTCCGTTTTACC 60.097 50.000 0.00 0.00 0.00 2.85
149 150 3.126073 GTCTCGTTTGTCCGTTTTACCT 58.874 45.455 0.00 0.00 0.00 3.08
150 151 4.298332 GTCTCGTTTGTCCGTTTTACCTA 58.702 43.478 0.00 0.00 0.00 3.08
151 152 4.744631 GTCTCGTTTGTCCGTTTTACCTAA 59.255 41.667 0.00 0.00 0.00 2.69
152 153 5.234116 GTCTCGTTTGTCCGTTTTACCTAAA 59.766 40.000 0.00 0.00 0.00 1.85
153 154 5.234116 TCTCGTTTGTCCGTTTTACCTAAAC 59.766 40.000 0.00 0.00 42.20 2.01
161 162 1.464608 GTTTTACCTAAACGGACGGGC 59.535 52.381 0.00 0.00 37.03 6.13
162 163 0.036483 TTTACCTAAACGGACGGGCC 60.036 55.000 0.00 0.00 36.31 5.80
172 173 2.203451 GACGGGCCGGAGAGGATA 60.203 66.667 31.78 0.00 45.00 2.59
173 174 1.831286 GACGGGCCGGAGAGGATAA 60.831 63.158 31.78 0.00 45.00 1.75
174 175 1.807495 GACGGGCCGGAGAGGATAAG 61.807 65.000 31.78 0.00 45.00 1.73
175 176 2.574955 CGGGCCGGAGAGGATAAGG 61.575 68.421 20.56 0.00 45.00 2.69
176 177 1.459730 GGGCCGGAGAGGATAAGGT 60.460 63.158 5.05 0.00 45.00 3.50
177 178 1.473497 GGGCCGGAGAGGATAAGGTC 61.473 65.000 5.05 0.00 45.00 3.85
178 179 1.660917 GCCGGAGAGGATAAGGTCG 59.339 63.158 5.05 0.00 45.00 4.79
179 180 1.660917 CCGGAGAGGATAAGGTCGC 59.339 63.158 0.00 0.00 45.00 5.19
180 181 1.283181 CGGAGAGGATAAGGTCGCG 59.717 63.158 0.00 0.00 0.00 5.87
181 182 1.007154 GGAGAGGATAAGGTCGCGC 60.007 63.158 0.00 0.00 0.00 6.86
182 183 1.370657 GAGAGGATAAGGTCGCGCG 60.371 63.158 26.76 26.76 0.00 6.86
183 184 2.354773 GAGGATAAGGTCGCGCGG 60.355 66.667 31.69 11.75 0.00 6.46
184 185 3.135056 GAGGATAAGGTCGCGCGGT 62.135 63.158 31.69 15.28 0.00 5.68
185 186 2.960129 GGATAAGGTCGCGCGGTG 60.960 66.667 31.69 1.17 0.00 4.94
186 187 2.960129 GATAAGGTCGCGCGGTGG 60.960 66.667 31.69 0.71 0.00 4.61
187 188 3.420214 GATAAGGTCGCGCGGTGGA 62.420 63.158 31.69 7.56 0.00 4.02
188 189 3.426117 ATAAGGTCGCGCGGTGGAG 62.426 63.158 31.69 0.00 0.00 3.86
207 208 1.300620 TTGTCCTGAGCGACGGTTG 60.301 57.895 0.00 0.00 35.40 3.77
231 232 2.050168 GTACGCACGTCCGGTTCA 60.050 61.111 2.95 0.00 0.00 3.18
244 245 1.801178 CCGGTTCAGAAGCAGTTTCTC 59.199 52.381 12.77 0.00 44.34 2.87
345 346 1.142748 GCTCCATGTCCAGTCTCGG 59.857 63.158 0.00 0.00 0.00 4.63
425 430 2.531927 TTTATCGCGCCTCACGTCGT 62.532 55.000 0.00 0.00 46.11 4.34
426 431 2.908088 TTATCGCGCCTCACGTCGTC 62.908 60.000 0.00 0.00 46.11 4.20
431 436 2.562912 GCCTCACGTCGTCGGTAA 59.437 61.111 7.05 0.00 41.85 2.85
451 490 0.809385 TAAAGAGCGGACAGGACGAG 59.191 55.000 0.00 0.00 0.00 4.18
452 491 2.493907 AAAGAGCGGACAGGACGAGC 62.494 60.000 0.00 0.00 0.00 5.03
462 501 2.031163 GGACGAGCAGCCAGTTGT 59.969 61.111 0.00 0.00 0.00 3.32
558 601 2.842936 CGCCCCCGGTCTATTCCT 60.843 66.667 0.00 0.00 0.00 3.36
563 607 0.179045 CCCCGGTCTATTCCTGCAAG 60.179 60.000 0.00 0.00 0.00 4.01
574 618 7.600752 GGTCTATTCCTGCAAGATAATACAGAC 59.399 40.741 0.00 0.00 34.07 3.51
623 675 1.469079 GCGTGGAAGCAACACAAAAGT 60.469 47.619 6.32 0.00 38.74 2.66
680 732 2.688958 AGCTTAGCTACGGGACACTTAG 59.311 50.000 4.30 0.00 36.99 2.18
724 782 1.688197 ACTTCGACCGTCCCAAAGTTA 59.312 47.619 0.00 0.00 0.00 2.24
725 783 2.102925 ACTTCGACCGTCCCAAAGTTAA 59.897 45.455 0.00 0.00 0.00 2.01
726 784 2.153366 TCGACCGTCCCAAAGTTAAC 57.847 50.000 0.00 0.00 0.00 2.01
759 859 2.354188 CGTTCGCACGTGAGGACA 60.354 61.111 27.15 7.04 41.84 4.02
771 871 0.323302 TGAGGACACCAATTAGCGCA 59.677 50.000 11.47 0.00 0.00 6.09
773 873 0.392998 AGGACACCAATTAGCGCAGG 60.393 55.000 11.47 5.69 0.00 4.85
776 876 0.893270 ACACCAATTAGCGCAGGCAA 60.893 50.000 11.47 0.00 43.41 4.52
823 929 2.231693 CGTCTCGTCAGACTGTAAACG 58.768 52.381 8.47 8.47 46.31 3.60
826 932 2.983402 TCGTCAGACTGTAAACGAGG 57.017 50.000 12.37 0.00 39.04 4.63
827 933 2.497138 TCGTCAGACTGTAAACGAGGA 58.503 47.619 12.37 0.00 39.04 3.71
828 934 2.483106 TCGTCAGACTGTAAACGAGGAG 59.517 50.000 12.37 0.00 39.04 3.69
829 935 2.597520 GTCAGACTGTAAACGAGGAGC 58.402 52.381 1.59 0.00 0.00 4.70
853 959 3.387050 AGCTCCGGTAAAATATCCTCGTT 59.613 43.478 0.00 0.00 0.00 3.85
854 960 3.493503 GCTCCGGTAAAATATCCTCGTTG 59.506 47.826 0.00 0.00 0.00 4.10
855 961 4.690122 CTCCGGTAAAATATCCTCGTTGT 58.310 43.478 0.00 0.00 0.00 3.32
856 962 5.737063 GCTCCGGTAAAATATCCTCGTTGTA 60.737 44.000 0.00 0.00 0.00 2.41
857 963 5.835257 TCCGGTAAAATATCCTCGTTGTAG 58.165 41.667 0.00 0.00 0.00 2.74
859 965 5.461078 CCGGTAAAATATCCTCGTTGTAGTG 59.539 44.000 0.00 0.00 0.00 2.74
860 966 6.038356 CGGTAAAATATCCTCGTTGTAGTGT 58.962 40.000 0.00 0.00 0.00 3.55
862 968 7.037438 GGTAAAATATCCTCGTTGTAGTGTCA 58.963 38.462 0.00 0.00 0.00 3.58
863 969 7.222224 GGTAAAATATCCTCGTTGTAGTGTCAG 59.778 40.741 0.00 0.00 0.00 3.51
865 971 5.759506 ATATCCTCGTTGTAGTGTCAGAG 57.240 43.478 0.00 0.00 0.00 3.35
866 972 1.540267 TCCTCGTTGTAGTGTCAGAGC 59.460 52.381 0.00 0.00 0.00 4.09
867 973 1.269723 CCTCGTTGTAGTGTCAGAGCA 59.730 52.381 0.00 0.00 0.00 4.26
868 974 2.320367 CTCGTTGTAGTGTCAGAGCAC 58.680 52.381 0.00 0.00 39.51 4.40
870 976 2.031069 TCGTTGTAGTGTCAGAGCACTC 60.031 50.000 8.42 0.00 45.63 3.51
871 977 2.678324 GTTGTAGTGTCAGAGCACTCC 58.322 52.381 8.42 0.57 45.63 3.85
872 978 1.257743 TGTAGTGTCAGAGCACTCCC 58.742 55.000 8.42 3.68 45.63 4.30
873 979 0.533032 GTAGTGTCAGAGCACTCCCC 59.467 60.000 8.42 0.00 45.63 4.81
874 980 0.614979 TAGTGTCAGAGCACTCCCCC 60.615 60.000 8.42 0.00 45.63 5.40
875 981 1.915769 GTGTCAGAGCACTCCCCCT 60.916 63.158 0.00 0.00 36.51 4.79
876 982 1.610673 TGTCAGAGCACTCCCCCTC 60.611 63.158 0.00 0.00 0.00 4.30
877 983 2.363018 TCAGAGCACTCCCCCTCG 60.363 66.667 0.00 0.00 33.39 4.63
878 984 2.363018 CAGAGCACTCCCCCTCGA 60.363 66.667 0.00 0.00 33.39 4.04
879 985 2.043450 AGAGCACTCCCCCTCGAG 60.043 66.667 5.13 5.13 35.88 4.04
880 986 3.844090 GAGCACTCCCCCTCGAGC 61.844 72.222 6.99 0.00 32.79 5.03
960 1071 3.737172 CAAGAACCGCCCAAGCCG 61.737 66.667 0.00 0.00 34.57 5.52
962 1073 3.485346 AAGAACCGCCCAAGCCGAA 62.485 57.895 0.00 0.00 34.57 4.30
964 1075 4.572571 AACCGCCCAAGCCGAACA 62.573 61.111 0.00 0.00 34.57 3.18
974 1085 0.814457 AAGCCGAACACACAAGCAAA 59.186 45.000 0.00 0.00 0.00 3.68
975 1086 0.381801 AGCCGAACACACAAGCAAAG 59.618 50.000 0.00 0.00 0.00 2.77
976 1087 0.594796 GCCGAACACACAAGCAAAGG 60.595 55.000 0.00 0.00 0.00 3.11
977 1088 0.030638 CCGAACACACAAGCAAAGGG 59.969 55.000 0.00 0.00 0.00 3.95
978 1089 1.021202 CGAACACACAAGCAAAGGGA 58.979 50.000 0.00 0.00 0.00 4.20
979 1090 1.002468 CGAACACACAAGCAAAGGGAG 60.002 52.381 0.00 0.00 0.00 4.30
981 1092 0.468029 ACACACAAGCAAAGGGAGGG 60.468 55.000 0.00 0.00 0.00 4.30
983 1094 0.178990 ACACAAGCAAAGGGAGGGAC 60.179 55.000 0.00 0.00 0.00 4.46
984 1095 0.178992 CACAAGCAAAGGGAGGGACA 60.179 55.000 0.00 0.00 0.00 4.02
986 1097 1.075659 AAGCAAAGGGAGGGACAGC 59.924 57.895 0.00 0.00 0.00 4.40
987 1098 2.747855 GCAAAGGGAGGGACAGCG 60.748 66.667 0.00 0.00 0.00 5.18
1233 1381 4.077184 CCGTTCTACCCGCTGGCA 62.077 66.667 0.00 0.00 33.59 4.92
1588 2565 0.307146 GTGAGGCGTACTAGCTACCG 59.693 60.000 0.00 0.00 37.29 4.02
1600 2577 2.181021 CTACCGGACAGTCGTGCC 59.819 66.667 9.46 0.00 0.00 5.01
1604 2581 2.734723 CGGACAGTCGTGCCACAG 60.735 66.667 0.00 0.00 0.00 3.66
1621 2598 3.435671 CCACAGAGTTACCGGATGTTTTC 59.564 47.826 9.46 0.00 0.00 2.29
1623 2600 4.755123 CACAGAGTTACCGGATGTTTTCTT 59.245 41.667 9.46 0.00 0.00 2.52
1629 2606 8.101419 AGAGTTACCGGATGTTTTCTTTTATCT 58.899 33.333 9.46 0.00 0.00 1.98
1684 2755 5.811100 GCGAGGTTTAAGAAATGCTAGTAGT 59.189 40.000 0.00 0.00 0.00 2.73
1699 2770 6.256912 GCTAGTAGTAGCGTGGAATCTATT 57.743 41.667 13.69 0.00 42.41 1.73
1790 2885 1.873591 CTTTCTTGGACGGACTGTTGG 59.126 52.381 0.00 0.00 0.00 3.77
1791 2886 0.834612 TTCTTGGACGGACTGTTGGT 59.165 50.000 0.00 0.00 0.00 3.67
1860 2973 3.979495 GTGCGTTCTATAATCGGGTAGTG 59.021 47.826 0.00 0.00 0.00 2.74
1926 3039 1.667724 CGGTATTTCTGCTTCTGCTGG 59.332 52.381 0.00 0.00 40.48 4.85
1927 3040 1.403323 GGTATTTCTGCTTCTGCTGGC 59.597 52.381 0.00 0.00 40.48 4.85
1928 3041 1.063174 GTATTTCTGCTTCTGCTGGCG 59.937 52.381 0.00 0.00 40.48 5.69
1929 3042 1.930908 ATTTCTGCTTCTGCTGGCGC 61.931 55.000 0.00 0.00 40.48 6.53
1931 3044 3.497932 CTGCTTCTGCTGGCGCTC 61.498 66.667 7.64 0.00 40.48 5.03
1935 3048 4.765449 TTCTGCTGGCGCTCGCAT 62.765 61.111 20.84 0.00 44.11 4.73
1956 3069 2.804931 CGTGCGCGATCACTGTGA 60.805 61.111 16.08 13.60 41.33 3.58
1958 3071 2.432456 TGCGCGATCACTGTGACC 60.432 61.111 12.10 1.43 0.00 4.02
1959 3072 3.545481 GCGCGATCACTGTGACCG 61.545 66.667 19.96 19.96 0.00 4.79
1960 3073 2.126463 CGCGATCACTGTGACCGT 60.126 61.111 24.16 4.21 0.00 4.83
1961 3074 1.135939 CGCGATCACTGTGACCGTA 59.864 57.895 24.16 0.00 0.00 4.02
2010 3221 0.749454 GAGCGATGAATGCTTGGGGT 60.749 55.000 0.00 0.00 44.18 4.95
2127 3338 0.395036 TCAATTATGGGTGGGTGGCG 60.395 55.000 0.00 0.00 0.00 5.69
2160 3371 2.202797 AAGCAGATGACGCGCGAT 60.203 55.556 39.36 21.55 0.00 4.58
2692 3904 6.652062 GCCATTTCCAGTGATGAAATTTCTTT 59.348 34.615 18.64 6.81 39.71 2.52
2694 3906 9.059260 CCATTTCCAGTGATGAAATTTCTTTTT 57.941 29.630 18.64 2.01 39.71 1.94
2758 4028 4.556233 GTGTCATGTGCTGTAGTTGACTA 58.444 43.478 8.64 0.00 38.00 2.59
2783 4053 3.479489 GACCGAACCCAACCTTTTCTTA 58.521 45.455 0.00 0.00 0.00 2.10
2784 4054 3.483421 ACCGAACCCAACCTTTTCTTAG 58.517 45.455 0.00 0.00 0.00 2.18
2785 4055 2.228103 CCGAACCCAACCTTTTCTTAGC 59.772 50.000 0.00 0.00 0.00 3.09
2786 4056 2.228103 CGAACCCAACCTTTTCTTAGCC 59.772 50.000 0.00 0.00 0.00 3.93
2893 4163 4.096682 GGTGAGATGACTAGTGACCAGTAC 59.903 50.000 0.00 0.00 0.00 2.73
2900 4170 2.746362 ACTAGTGACCAGTACTACACGC 59.254 50.000 15.98 8.68 38.15 5.34
2952 4226 2.305928 TGTGCATAATCAATTCCCCGG 58.694 47.619 0.00 0.00 0.00 5.73
2959 4233 0.106217 ATCAATTCCCCGGGCGAAAT 60.106 50.000 23.06 15.77 0.00 2.17
3006 4285 2.125912 CCTCCGCTCGTCCTTGTG 60.126 66.667 0.00 0.00 0.00 3.33
3228 4531 7.255381 CCTGTTTCACAAGATGAATGAAGAAGT 60.255 37.037 0.00 0.00 46.80 3.01
3247 4550 6.840075 AGAAGTAGTCATGAACGTGTACTAC 58.160 40.000 17.97 17.97 41.71 2.73
3259 4562 6.749578 TGAACGTGTACTACTAAAAACGTGAA 59.250 34.615 4.77 0.00 42.82 3.18
3260 4563 7.434897 TGAACGTGTACTACTAAAAACGTGAAT 59.565 33.333 4.77 0.00 42.82 2.57
3269 4572 5.705902 ACTAAAAACGTGAATGGCCAATAC 58.294 37.500 10.96 8.52 0.00 1.89
3276 4579 3.253188 CGTGAATGGCCAATACCTAATGG 59.747 47.826 10.96 0.00 39.80 3.16
3290 4593 2.016393 TAATGGGGCAGAGAGTCGCG 62.016 60.000 0.00 0.00 37.65 5.87
3497 4802 1.146263 GATCCATCCACGACCCCAC 59.854 63.158 0.00 0.00 0.00 4.61
3508 4813 3.995506 GACCCCACCATTCAGCCCG 62.996 68.421 0.00 0.00 0.00 6.13
3536 4848 0.721718 GAGGCTTGTTTGATCGTCCG 59.278 55.000 0.00 0.00 0.00 4.79
3564 4876 1.062121 TCTTTCTCCGGATCTGGGGAT 60.062 52.381 24.28 0.00 38.62 3.85
3569 4881 2.111878 CGGATCTGGGGATGTGCC 59.888 66.667 0.00 0.00 31.46 5.01
3598 4911 1.408969 TGTGCCTATCCGCATACAGA 58.591 50.000 0.00 0.00 41.70 3.41
3599 4912 1.970640 TGTGCCTATCCGCATACAGAT 59.029 47.619 0.00 0.00 41.70 2.90
3600 4913 3.161866 TGTGCCTATCCGCATACAGATA 58.838 45.455 0.00 0.00 41.70 1.98
3601 4914 3.056821 TGTGCCTATCCGCATACAGATAC 60.057 47.826 0.00 0.00 41.70 2.24
3602 4915 3.056821 GTGCCTATCCGCATACAGATACA 60.057 47.826 0.00 0.00 41.70 2.29
3603 4916 3.193479 TGCCTATCCGCATACAGATACAG 59.807 47.826 0.00 0.00 32.62 2.74
3685 4998 2.076863 TCTGCTTTCGGCTTTAGCTTC 58.923 47.619 0.00 0.00 42.39 3.86
3690 5003 1.493854 TTCGGCTTTAGCTTCCCCCA 61.494 55.000 0.00 0.00 41.70 4.96
3694 5007 1.550524 GGCTTTAGCTTCCCCCAAAAG 59.449 52.381 0.00 0.00 41.70 2.27
3838 5155 6.093495 CCAGACGGTGACATGTAACATTAATT 59.907 38.462 15.45 0.00 0.00 1.40
3868 5191 2.749076 GTTATCAGTTGCCTGCATGACA 59.251 45.455 0.00 0.00 38.66 3.58
3869 5192 1.913778 ATCAGTTGCCTGCATGACAA 58.086 45.000 0.00 0.00 38.66 3.18
3870 5193 1.689984 TCAGTTGCCTGCATGACAAA 58.310 45.000 0.00 0.00 38.66 2.83
3896 5221 3.793144 CTGCAACGAAGCTCCGCC 61.793 66.667 0.00 0.00 34.99 6.13
4008 5337 1.153784 GTCGTGAATACCGCCGGAA 60.154 57.895 11.71 0.00 0.00 4.30
4020 5350 4.421479 CCGGAAGCTGCTCGTCGT 62.421 66.667 1.00 0.00 0.00 4.34
4038 5368 2.285756 TCGTCGTTGACAATTTGGACAC 59.714 45.455 0.78 0.00 32.09 3.67
4039 5369 2.601266 CGTCGTTGACAATTTGGACACC 60.601 50.000 0.78 0.00 32.09 4.16
4066 5401 2.682952 AGCCATCGTCGTCGTATTAG 57.317 50.000 1.33 0.00 38.33 1.73
4103 5438 2.661566 CGTGTGTCAAGCAGGCGAG 61.662 63.158 0.00 0.00 0.00 5.03
4139 5933 3.119424 TGAGTATGGTTATCGCGTGACAA 60.119 43.478 5.77 0.00 0.00 3.18
4194 6756 4.081531 AGAGCAGGAGAACAAAGAGATCAG 60.082 45.833 0.00 0.00 0.00 2.90
4274 7902 0.450184 ATGCGAAATGTAACCCGTGC 59.550 50.000 0.00 0.00 0.00 5.34
4275 7903 0.885150 TGCGAAATGTAACCCGTGCA 60.885 50.000 0.00 0.00 0.00 4.57
4283 7911 2.032620 TGTAACCCGTGCATTTGGTTT 58.967 42.857 18.72 6.69 42.24 3.27
5173 9524 0.250338 AGTGACCGACCAAAGCCTTC 60.250 55.000 0.00 0.00 0.00 3.46
5267 9634 5.462068 TGTATCATAACGCAACAGATACTGC 59.538 40.000 0.00 0.00 40.84 4.40
5312 9679 0.667487 TCTCGCGCCTTTCTTCACTG 60.667 55.000 0.00 0.00 0.00 3.66
5328 9695 6.101997 TCTTCACTGCTACTATGTGACATTG 58.898 40.000 2.29 4.14 39.95 2.82
5379 9746 6.951198 TCTAAATGAAAATGGCCTCAGGTTTA 59.049 34.615 3.32 1.76 0.00 2.01
5387 9754 1.134551 GGCCTCAGGTTTAGCTCTCTG 60.135 57.143 0.00 0.00 0.00 3.35
5388 9755 1.134551 GCCTCAGGTTTAGCTCTCTGG 60.135 57.143 0.00 0.00 0.00 3.86
5418 9791 4.396166 ACTCATTTGCAATCCTAGAAACGG 59.604 41.667 0.00 0.00 0.00 4.44
5421 9794 0.618458 TGCAATCCTAGAAACGGCCT 59.382 50.000 0.00 0.00 0.00 5.19
5423 9796 2.092323 GCAATCCTAGAAACGGCCTTT 58.908 47.619 0.00 0.00 0.00 3.11
5424 9797 2.159379 GCAATCCTAGAAACGGCCTTTG 60.159 50.000 0.00 0.00 0.00 2.77
5450 9823 3.575256 TCATCTGCACAAAAGGAGCAATT 59.425 39.130 0.00 0.00 42.63 2.32
5525 9928 6.413892 TGTTATCTGCACTACCAATTGATCA 58.586 36.000 7.12 0.00 0.00 2.92
5625 10036 4.617959 TGTAAAGGTCTCGTTTCACTCTG 58.382 43.478 0.00 0.00 0.00 3.35
5652 10063 1.682323 GTCGAACCTCTCTATGACCCC 59.318 57.143 0.00 0.00 0.00 4.95
5696 10107 7.660030 TGTTTTCCCTTCTCTGATTTTTCTT 57.340 32.000 0.00 0.00 0.00 2.52
5861 10273 3.763897 CCCCAAAACTACTGATTTCCCTG 59.236 47.826 0.00 0.00 0.00 4.45
5882 10294 7.669722 TCCCTGCTAATTTTCTCAATAAACACT 59.330 33.333 0.00 0.00 0.00 3.55
5883 10295 7.756722 CCCTGCTAATTTTCTCAATAAACACTG 59.243 37.037 0.00 0.00 0.00 3.66
5934 10346 0.752743 CCGACATACCGGGTCCACTA 60.753 60.000 6.32 0.00 45.43 2.74
5938 10350 2.036862 GACATACCGGGTCCACTATTCC 59.963 54.545 6.32 0.00 0.00 3.01
5985 10397 2.352342 CACCGTTTGTTGACCGTTAAGT 59.648 45.455 0.00 0.00 0.00 2.24
6029 10441 4.094590 CAGCATTGTCATCTCTCTCAAACC 59.905 45.833 0.00 0.00 0.00 3.27
6037 10449 6.042552 TGTCATCTCTCTCAAACCTTCTTCTT 59.957 38.462 0.00 0.00 0.00 2.52
6110 10522 2.924290 GAGGTAAGATCAGTCGTGTTGC 59.076 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.072088 CAAACGGACGTGCGCCTC 62.072 66.667 29.80 0.00 0.00 4.70
14 15 4.659874 CACCAAACGGACGTGCGC 62.660 66.667 29.80 0.00 0.00 6.09
15 16 3.218209 GACACCAAACGGACGTGCG 62.218 63.158 28.33 28.33 0.00 5.34
16 17 2.629763 GACACCAAACGGACGTGC 59.370 61.111 0.00 0.00 0.00 5.34
17 18 1.219522 GAGGACACCAAACGGACGTG 61.220 60.000 0.00 0.00 0.00 4.49
18 19 1.068585 GAGGACACCAAACGGACGT 59.931 57.895 0.00 0.00 0.00 4.34
19 20 2.019951 CGAGGACACCAAACGGACG 61.020 63.158 0.00 0.00 0.00 4.79
20 21 2.315386 GCGAGGACACCAAACGGAC 61.315 63.158 0.00 0.00 0.00 4.79
21 22 2.029964 GCGAGGACACCAAACGGA 59.970 61.111 0.00 0.00 0.00 4.69
22 23 3.411351 CGCGAGGACACCAAACGG 61.411 66.667 0.00 0.00 0.00 4.44
23 24 2.355363 TCGCGAGGACACCAAACG 60.355 61.111 3.71 0.00 0.00 3.60
24 25 3.241177 GTCGCGAGGACACCAAAC 58.759 61.111 10.24 0.00 45.36 2.93
31 32 2.741211 GGTTTGGGTCGCGAGGAC 60.741 66.667 10.24 2.88 45.31 3.85
32 33 4.011517 GGGTTTGGGTCGCGAGGA 62.012 66.667 10.24 0.00 0.00 3.71
34 35 4.675029 ACGGGTTTGGGTCGCGAG 62.675 66.667 10.24 0.00 42.30 5.03
35 36 4.668118 GACGGGTTTGGGTCGCGA 62.668 66.667 3.71 3.71 42.30 5.87
39 40 2.592287 TTGCGACGGGTTTGGGTC 60.592 61.111 0.00 0.00 0.00 4.46
40 41 2.593436 CTTGCGACGGGTTTGGGT 60.593 61.111 0.00 0.00 0.00 4.51
41 42 1.730451 AAACTTGCGACGGGTTTGGG 61.730 55.000 0.00 0.00 32.84 4.12
42 43 0.593773 CAAACTTGCGACGGGTTTGG 60.594 55.000 8.69 0.00 43.19 3.28
43 44 1.206115 GCAAACTTGCGACGGGTTTG 61.206 55.000 11.24 11.24 46.97 2.93
44 45 1.065109 GCAAACTTGCGACGGGTTT 59.935 52.632 0.00 0.00 45.11 3.27
45 46 2.719354 GCAAACTTGCGACGGGTT 59.281 55.556 0.00 0.00 45.11 4.11
54 55 1.330306 CCATTTCGAGCGCAAACTTG 58.670 50.000 11.47 0.00 0.00 3.16
55 56 0.240945 CCCATTTCGAGCGCAAACTT 59.759 50.000 11.47 0.00 0.00 2.66
56 57 0.889186 ACCCATTTCGAGCGCAAACT 60.889 50.000 11.47 0.00 0.00 2.66
57 58 0.454452 GACCCATTTCGAGCGCAAAC 60.454 55.000 11.47 0.00 0.00 2.93
58 59 1.873165 GACCCATTTCGAGCGCAAA 59.127 52.632 11.47 1.09 0.00 3.68
59 60 2.387445 CGACCCATTTCGAGCGCAA 61.387 57.895 11.47 0.00 41.78 4.85
60 61 2.813474 CGACCCATTTCGAGCGCA 60.813 61.111 11.47 0.00 41.78 6.09
61 62 3.564027 CCGACCCATTTCGAGCGC 61.564 66.667 0.00 0.00 41.78 5.92
62 63 3.564027 GCCGACCCATTTCGAGCG 61.564 66.667 0.00 0.00 41.78 5.03
63 64 3.202706 GGCCGACCCATTTCGAGC 61.203 66.667 0.00 0.00 41.78 5.03
73 74 4.629523 TTTGTGTCCGGGCCGACC 62.630 66.667 30.79 17.72 31.35 4.79
74 75 2.592287 TTTTGTGTCCGGGCCGAC 60.592 61.111 30.79 22.88 0.00 4.79
75 76 2.592287 GTTTTGTGTCCGGGCCGA 60.592 61.111 30.79 11.12 0.00 5.54
76 77 2.902846 TGTTTTGTGTCCGGGCCG 60.903 61.111 21.46 21.46 0.00 6.13
77 78 2.122167 TGTGTTTTGTGTCCGGGCC 61.122 57.895 2.12 0.00 0.00 5.80
78 79 1.065109 GTGTGTTTTGTGTCCGGGC 59.935 57.895 0.00 0.00 0.00 6.13
79 80 1.032657 TGGTGTGTTTTGTGTCCGGG 61.033 55.000 0.00 0.00 0.00 5.73
80 81 0.380378 CTGGTGTGTTTTGTGTCCGG 59.620 55.000 0.00 0.00 0.00 5.14
81 82 1.374560 TCTGGTGTGTTTTGTGTCCG 58.625 50.000 0.00 0.00 0.00 4.79
82 83 2.948979 TCATCTGGTGTGTTTTGTGTCC 59.051 45.455 0.00 0.00 0.00 4.02
83 84 3.627577 ACTCATCTGGTGTGTTTTGTGTC 59.372 43.478 0.00 0.00 30.75 3.67
84 85 3.620488 ACTCATCTGGTGTGTTTTGTGT 58.380 40.909 0.00 0.00 30.75 3.72
85 86 3.003689 GGACTCATCTGGTGTGTTTTGTG 59.996 47.826 0.00 0.00 34.86 3.33
86 87 3.214328 GGACTCATCTGGTGTGTTTTGT 58.786 45.455 0.00 0.00 34.86 2.83
87 88 2.224079 CGGACTCATCTGGTGTGTTTTG 59.776 50.000 0.00 0.00 34.86 2.44
88 89 2.494059 CGGACTCATCTGGTGTGTTTT 58.506 47.619 0.00 0.00 34.86 2.43
89 90 1.270839 CCGGACTCATCTGGTGTGTTT 60.271 52.381 0.00 0.00 45.41 2.83
90 91 0.321671 CCGGACTCATCTGGTGTGTT 59.678 55.000 0.00 0.00 45.41 3.32
91 92 1.975327 CCGGACTCATCTGGTGTGT 59.025 57.895 0.00 0.00 45.41 3.72
92 93 4.919653 CCGGACTCATCTGGTGTG 57.080 61.111 0.00 0.00 45.41 3.82
97 98 1.433879 GACGGTCCGGACTCATCTG 59.566 63.158 32.52 15.02 0.00 2.90
98 99 2.113433 CGACGGTCCGGACTCATCT 61.113 63.158 32.52 11.61 0.00 2.90
99 100 2.408022 CGACGGTCCGGACTCATC 59.592 66.667 32.52 24.11 0.00 2.92
100 101 3.823330 GCGACGGTCCGGACTCAT 61.823 66.667 32.52 18.77 0.00 2.90
120 121 3.423154 CAAACGAGACGGCCCAGC 61.423 66.667 0.00 0.00 0.00 4.85
121 122 2.027625 GACAAACGAGACGGCCCAG 61.028 63.158 0.00 0.00 0.00 4.45
122 123 2.029964 GACAAACGAGACGGCCCA 59.970 61.111 0.00 0.00 0.00 5.36
123 124 2.741211 GGACAAACGAGACGGCCC 60.741 66.667 0.00 0.00 0.00 5.80
124 125 3.110178 CGGACAAACGAGACGGCC 61.110 66.667 0.00 0.00 35.47 6.13
125 126 1.493134 AAACGGACAAACGAGACGGC 61.493 55.000 0.00 0.00 37.61 5.68
126 127 0.932399 AAAACGGACAAACGAGACGG 59.068 50.000 0.00 0.00 37.61 4.79
127 128 2.097250 GGTAAAACGGACAAACGAGACG 60.097 50.000 0.00 0.00 37.61 4.18
128 129 3.126073 AGGTAAAACGGACAAACGAGAC 58.874 45.455 0.00 0.00 37.61 3.36
129 130 3.457610 AGGTAAAACGGACAAACGAGA 57.542 42.857 0.00 0.00 37.61 4.04
130 131 5.434706 GTTTAGGTAAAACGGACAAACGAG 58.565 41.667 0.00 0.00 38.27 4.18
131 132 5.402464 GTTTAGGTAAAACGGACAAACGA 57.598 39.130 0.00 0.00 38.27 3.85
141 142 1.464608 GCCCGTCCGTTTAGGTAAAAC 59.535 52.381 0.00 0.00 43.44 2.43
142 143 1.610363 GGCCCGTCCGTTTAGGTAAAA 60.610 52.381 0.00 0.00 41.99 1.52
143 144 0.036483 GGCCCGTCCGTTTAGGTAAA 60.036 55.000 0.00 0.00 41.99 2.01
144 145 1.596408 GGCCCGTCCGTTTAGGTAA 59.404 57.895 0.00 0.00 41.99 2.85
145 146 3.297904 GGCCCGTCCGTTTAGGTA 58.702 61.111 0.00 0.00 41.99 3.08
154 155 3.804638 TATCCTCTCCGGCCCGTCC 62.805 68.421 0.85 0.00 0.00 4.79
155 156 1.807495 CTTATCCTCTCCGGCCCGTC 61.807 65.000 0.85 0.00 0.00 4.79
156 157 1.833049 CTTATCCTCTCCGGCCCGT 60.833 63.158 0.85 0.00 0.00 5.28
157 158 2.574955 CCTTATCCTCTCCGGCCCG 61.575 68.421 0.00 0.00 0.00 6.13
158 159 1.459730 ACCTTATCCTCTCCGGCCC 60.460 63.158 0.00 0.00 0.00 5.80
159 160 1.807495 CGACCTTATCCTCTCCGGCC 61.807 65.000 0.00 0.00 0.00 6.13
160 161 1.660917 CGACCTTATCCTCTCCGGC 59.339 63.158 0.00 0.00 0.00 6.13
161 162 1.660917 GCGACCTTATCCTCTCCGG 59.339 63.158 0.00 0.00 0.00 5.14
162 163 1.283181 CGCGACCTTATCCTCTCCG 59.717 63.158 0.00 0.00 0.00 4.63
163 164 1.007154 GCGCGACCTTATCCTCTCC 60.007 63.158 12.10 0.00 0.00 3.71
164 165 1.370657 CGCGCGACCTTATCCTCTC 60.371 63.158 28.94 0.00 0.00 3.20
165 166 2.722487 CGCGCGACCTTATCCTCT 59.278 61.111 28.94 0.00 0.00 3.69
166 167 2.354773 CCGCGCGACCTTATCCTC 60.355 66.667 34.63 0.00 0.00 3.71
167 168 3.145551 ACCGCGCGACCTTATCCT 61.146 61.111 34.63 0.00 0.00 3.24
168 169 2.960129 CACCGCGCGACCTTATCC 60.960 66.667 34.63 0.00 0.00 2.59
169 170 2.960129 CCACCGCGCGACCTTATC 60.960 66.667 34.63 0.00 0.00 1.75
170 171 3.426117 CTCCACCGCGCGACCTTAT 62.426 63.158 34.63 6.07 0.00 1.73
171 172 4.124351 CTCCACCGCGCGACCTTA 62.124 66.667 34.63 11.52 0.00 2.69
178 179 4.681978 AGGACAACTCCACCGCGC 62.682 66.667 0.00 0.00 39.39 6.86
179 180 2.738521 CAGGACAACTCCACCGCG 60.739 66.667 0.00 0.00 39.39 6.46
180 181 1.374758 CTCAGGACAACTCCACCGC 60.375 63.158 0.00 0.00 39.39 5.68
181 182 1.374758 GCTCAGGACAACTCCACCG 60.375 63.158 0.00 0.00 39.39 4.94
182 183 1.374758 CGCTCAGGACAACTCCACC 60.375 63.158 0.00 0.00 39.39 4.61
183 184 0.667792 GTCGCTCAGGACAACTCCAC 60.668 60.000 0.00 0.00 39.39 4.02
184 185 1.666011 GTCGCTCAGGACAACTCCA 59.334 57.895 0.00 0.00 39.39 3.86
185 186 1.444553 CGTCGCTCAGGACAACTCC 60.445 63.158 0.00 0.00 36.73 3.85
186 187 1.444553 CCGTCGCTCAGGACAACTC 60.445 63.158 0.00 0.00 36.73 3.01
187 188 1.745320 AACCGTCGCTCAGGACAACT 61.745 55.000 0.00 0.00 36.73 3.16
188 189 1.300697 AACCGTCGCTCAGGACAAC 60.301 57.895 0.00 0.00 36.73 3.32
189 190 1.300620 CAACCGTCGCTCAGGACAA 60.301 57.895 0.00 0.00 36.73 3.18
190 191 2.338620 CAACCGTCGCTCAGGACA 59.661 61.111 0.00 0.00 36.73 4.02
191 192 2.022129 CACAACCGTCGCTCAGGAC 61.022 63.158 0.00 0.00 0.00 3.85
194 195 3.414700 GGCACAACCGTCGCTCAG 61.415 66.667 0.00 0.00 0.00 3.35
224 225 1.801178 GAGAAACTGCTTCTGAACCGG 59.199 52.381 0.00 0.00 44.82 5.28
244 245 0.668401 GGTACTGTTTCCCCGTGTCG 60.668 60.000 0.00 0.00 0.00 4.35
345 346 3.857854 CCGTGCATGCAGAGCGAC 61.858 66.667 23.41 7.18 33.85 5.19
425 430 2.100252 CCTGTCCGCTCTTTATTACCGA 59.900 50.000 0.00 0.00 0.00 4.69
426 431 2.100252 TCCTGTCCGCTCTTTATTACCG 59.900 50.000 0.00 0.00 0.00 4.02
427 432 3.455327 GTCCTGTCCGCTCTTTATTACC 58.545 50.000 0.00 0.00 0.00 2.85
428 433 3.114065 CGTCCTGTCCGCTCTTTATTAC 58.886 50.000 0.00 0.00 0.00 1.89
431 436 1.405821 CTCGTCCTGTCCGCTCTTTAT 59.594 52.381 0.00 0.00 0.00 1.40
451 490 0.537371 ACAGGGTAACAACTGGCTGC 60.537 55.000 0.00 0.00 39.00 5.25
452 491 1.880027 GAACAGGGTAACAACTGGCTG 59.120 52.381 0.00 0.00 39.00 4.85
462 501 5.954153 TTATTACCATCCGAACAGGGTAA 57.046 39.130 4.76 4.76 46.53 2.85
558 601 4.976116 CGATCGTGTCTGTATTATCTTGCA 59.024 41.667 7.03 0.00 0.00 4.08
563 607 5.505100 CGTGATCGATCGTGTCTGTATTATC 59.495 44.000 20.03 7.05 39.71 1.75
574 618 0.380733 TTCCCTCGTGATCGATCGTG 59.619 55.000 20.03 14.54 45.21 4.35
592 636 0.745845 CTTCCACGCTGCTGCCTATT 60.746 55.000 10.24 0.00 35.36 1.73
623 675 4.081697 TGTGCAATCTCTTTATCTCGTCCA 60.082 41.667 0.00 0.00 0.00 4.02
671 723 3.094572 TGTAGTACTGGCCTAAGTGTCC 58.905 50.000 5.39 0.00 0.00 4.02
680 732 2.766828 ACCTGATCTTGTAGTACTGGCC 59.233 50.000 5.39 0.00 0.00 5.36
689 746 5.620654 CGGTCGAAGTTAACCTGATCTTGTA 60.621 44.000 0.88 0.00 33.14 2.41
755 855 1.993369 GCCTGCGCTAATTGGTGTCC 61.993 60.000 9.73 0.00 0.00 4.02
757 857 0.893270 TTGCCTGCGCTAATTGGTGT 60.893 50.000 9.73 0.00 35.36 4.16
759 859 1.595093 GGTTGCCTGCGCTAATTGGT 61.595 55.000 9.73 0.00 35.36 3.67
776 876 5.587388 TTAGTCGATTAATCAACGGAGGT 57.413 39.130 15.57 0.00 0.00 3.85
826 932 2.503920 TATTTTACCGGAGCTCGCTC 57.496 50.000 9.46 10.36 42.04 5.03
827 933 2.288886 GGATATTTTACCGGAGCTCGCT 60.289 50.000 9.46 0.00 37.59 4.93
828 934 2.067013 GGATATTTTACCGGAGCTCGC 58.933 52.381 9.46 0.00 37.59 5.03
829 935 3.576648 GAGGATATTTTACCGGAGCTCG 58.423 50.000 9.46 3.03 38.88 5.03
857 963 1.893919 GAGGGGGAGTGCTCTGACAC 61.894 65.000 0.00 3.25 41.02 3.67
859 965 2.716017 CGAGGGGGAGTGCTCTGAC 61.716 68.421 0.00 0.00 0.00 3.51
860 966 2.363018 CGAGGGGGAGTGCTCTGA 60.363 66.667 0.00 0.00 0.00 3.27
862 968 2.043450 CTCGAGGGGGAGTGCTCT 60.043 66.667 3.91 0.00 0.00 4.09
863 969 3.844090 GCTCGAGGGGGAGTGCTC 61.844 72.222 15.58 0.00 36.41 4.26
873 979 3.811807 ATAGGGGGTCGGCTCGAGG 62.812 68.421 15.58 0.00 36.23 4.63
874 980 0.538977 TAATAGGGGGTCGGCTCGAG 60.539 60.000 8.45 8.45 36.23 4.04
875 981 0.106066 TTAATAGGGGGTCGGCTCGA 60.106 55.000 0.00 0.00 0.00 4.04
876 982 0.974383 ATTAATAGGGGGTCGGCTCG 59.026 55.000 0.00 0.00 0.00 5.03
877 983 4.321718 GTTTATTAATAGGGGGTCGGCTC 58.678 47.826 0.00 0.00 0.00 4.70
878 984 3.073503 GGTTTATTAATAGGGGGTCGGCT 59.926 47.826 0.00 0.00 0.00 5.52
879 985 3.415212 GGTTTATTAATAGGGGGTCGGC 58.585 50.000 0.00 0.00 0.00 5.54
880 986 3.654321 AGGGTTTATTAATAGGGGGTCGG 59.346 47.826 0.00 0.00 0.00 4.79
881 987 4.348754 TGAGGGTTTATTAATAGGGGGTCG 59.651 45.833 0.00 0.00 0.00 4.79
882 988 5.133153 TGTGAGGGTTTATTAATAGGGGGTC 59.867 44.000 0.00 0.00 0.00 4.46
883 989 5.047906 TGTGAGGGTTTATTAATAGGGGGT 58.952 41.667 0.00 0.00 0.00 4.95
960 1071 1.338020 CCTCCCTTTGCTTGTGTGTTC 59.662 52.381 0.00 0.00 0.00 3.18
962 1073 0.468029 CCCTCCCTTTGCTTGTGTGT 60.468 55.000 0.00 0.00 0.00 3.72
964 1075 0.178990 GTCCCTCCCTTTGCTTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
981 1092 4.888741 TCGATCTCGCGCGCTGTC 62.889 66.667 30.48 20.04 39.60 3.51
983 1094 3.870679 ATCTCGATCTCGCGCGCTG 62.871 63.158 30.48 22.06 39.60 5.18
984 1095 3.655031 ATCTCGATCTCGCGCGCT 61.655 61.111 30.48 10.53 39.60 5.92
986 1097 1.326598 CTTCATCTCGATCTCGCGCG 61.327 60.000 26.76 26.76 39.60 6.86
987 1098 1.001240 CCTTCATCTCGATCTCGCGC 61.001 60.000 0.00 0.00 39.60 6.86
1164 1312 3.343788 CTCCGGCGCGAAGAACTCT 62.344 63.158 12.10 0.00 0.00 3.24
1505 1689 2.395690 CGAACAGTCAATCGGCGC 59.604 61.111 0.00 0.00 35.49 6.53
1588 2565 1.373497 CTCTGTGGCACGACTGTCC 60.373 63.158 13.77 0.00 0.00 4.02
1600 2577 4.315803 AGAAAACATCCGGTAACTCTGTG 58.684 43.478 0.00 0.00 0.00 3.66
1604 2581 8.265165 AGATAAAAGAAAACATCCGGTAACTC 57.735 34.615 0.00 0.00 0.00 3.01
1640 2617 6.961554 CCTCGCAGATAAAACAAAACATCTAC 59.038 38.462 0.00 0.00 33.89 2.59
1642 2619 5.473504 ACCTCGCAGATAAAACAAAACATCT 59.526 36.000 0.00 0.00 33.89 2.90
1644 2621 5.705609 ACCTCGCAGATAAAACAAAACAT 57.294 34.783 0.00 0.00 33.89 2.71
1647 2624 7.932335 TCTTAAACCTCGCAGATAAAACAAAA 58.068 30.769 0.00 0.00 33.89 2.44
1648 2625 7.499321 TCTTAAACCTCGCAGATAAAACAAA 57.501 32.000 0.00 0.00 33.89 2.83
1684 2755 8.904834 GGAGATAGATAAATAGATTCCACGCTA 58.095 37.037 0.00 0.00 0.00 4.26
1790 2885 1.139947 GCTCGCCTACCAGACTGAC 59.860 63.158 3.32 0.00 0.00 3.51
1791 2886 0.684479 ATGCTCGCCTACCAGACTGA 60.684 55.000 3.32 0.00 0.00 3.41
1802 2897 1.153086 ATGTCCAAGGATGCTCGCC 60.153 57.895 0.00 0.00 0.00 5.54
1844 2939 4.090761 ACGACCACTACCCGATTATAGA 57.909 45.455 0.00 0.00 0.00 1.98
1845 2940 4.276678 TCAACGACCACTACCCGATTATAG 59.723 45.833 0.00 0.00 0.00 1.31
1849 2944 1.259609 TCAACGACCACTACCCGATT 58.740 50.000 0.00 0.00 0.00 3.34
1860 2973 2.163815 TCTTTCTCTCCGATCAACGACC 59.836 50.000 0.00 0.00 45.77 4.79
1939 3052 2.804931 TCACAGTGATCGCGCACG 60.805 61.111 8.75 4.34 43.42 5.34
1941 3054 2.432456 GGTCACAGTGATCGCGCA 60.432 61.111 8.75 0.00 0.00 6.09
1946 3059 2.223525 GCTACCTACGGTCACAGTGATC 60.224 54.545 6.51 4.89 37.09 2.92
1947 3060 1.749634 GCTACCTACGGTCACAGTGAT 59.250 52.381 6.51 0.00 37.09 3.06
1956 3069 1.784358 TATTGGCAGCTACCTACGGT 58.216 50.000 4.19 0.00 40.16 4.83
1958 3071 5.751243 AAAATTATTGGCAGCTACCTACG 57.249 39.130 4.19 0.00 0.00 3.51
1959 3072 6.321435 AGGAAAAATTATTGGCAGCTACCTAC 59.679 38.462 4.19 0.00 0.00 3.18
1960 3073 6.431722 AGGAAAAATTATTGGCAGCTACCTA 58.568 36.000 4.19 0.00 0.00 3.08
1961 3074 5.272402 AGGAAAAATTATTGGCAGCTACCT 58.728 37.500 4.19 0.00 0.00 3.08
1963 3076 7.706607 CCTTTAGGAAAAATTATTGGCAGCTAC 59.293 37.037 0.00 0.00 37.39 3.58
1967 3080 7.610865 TCACCTTTAGGAAAAATTATTGGCAG 58.389 34.615 2.06 0.00 38.94 4.85
2023 3234 2.248135 CCAAGCCAACACGTACGCA 61.248 57.895 16.72 0.00 0.00 5.24
2127 3338 1.521681 CTTCATCGGTTCCGGGAGC 60.522 63.158 11.37 0.31 0.00 4.70
2138 3349 1.556958 CGCGTCATCTGCTTCATCG 59.443 57.895 0.00 0.00 0.00 3.84
2651 3862 2.407428 GGCCTAGAACGCCAAAGCC 61.407 63.158 0.00 0.00 46.27 4.35
2694 3906 9.273016 AGAAATTTCATCACTACTCTCGAAAAA 57.727 29.630 19.99 0.00 0.00 1.94
2695 3907 8.833231 AGAAATTTCATCACTACTCTCGAAAA 57.167 30.769 19.99 0.00 0.00 2.29
2696 3908 9.574458 CTAGAAATTTCATCACTACTCTCGAAA 57.426 33.333 19.99 0.00 0.00 3.46
2697 3909 7.702772 GCTAGAAATTTCATCACTACTCTCGAA 59.297 37.037 19.99 0.00 0.00 3.71
2698 3910 7.067615 AGCTAGAAATTTCATCACTACTCTCGA 59.932 37.037 19.99 0.00 0.00 4.04
2699 3911 7.199766 AGCTAGAAATTTCATCACTACTCTCG 58.800 38.462 19.99 0.00 0.00 4.04
2700 3912 9.677567 CTAGCTAGAAATTTCATCACTACTCTC 57.322 37.037 16.15 0.00 0.00 3.20
2701 3913 8.141268 GCTAGCTAGAAATTTCATCACTACTCT 58.859 37.037 25.15 6.30 0.00 3.24
2702 3914 8.141268 AGCTAGCTAGAAATTTCATCACTACTC 58.859 37.037 25.15 0.00 0.00 2.59
2703 3915 8.017418 AGCTAGCTAGAAATTTCATCACTACT 57.983 34.615 25.15 7.09 0.00 2.57
2704 3916 9.405587 CTAGCTAGCTAGAAATTTCATCACTAC 57.594 37.037 37.99 5.02 46.56 2.73
2758 4028 1.974973 AAGGTTGGGTTCGGTCGTGT 61.975 55.000 0.00 0.00 0.00 4.49
2764 4034 2.228103 GCTAAGAAAAGGTTGGGTTCGG 59.772 50.000 0.00 0.00 0.00 4.30
2783 4053 1.913762 AGTGCACTCCCTAACGGCT 60.914 57.895 15.25 0.00 0.00 5.52
2784 4054 1.741770 CAGTGCACTCCCTAACGGC 60.742 63.158 18.64 0.00 0.00 5.68
2785 4055 0.670546 CACAGTGCACTCCCTAACGG 60.671 60.000 18.64 5.64 0.00 4.44
2786 4056 0.670546 CCACAGTGCACTCCCTAACG 60.671 60.000 18.64 6.46 0.00 3.18
2813 4083 2.109126 GCAATCAGTGAGCCGTCCC 61.109 63.158 0.00 0.00 0.00 4.46
2893 4163 2.607187 CACTACTTCCAAGGCGTGTAG 58.393 52.381 0.00 0.00 37.29 2.74
2900 4170 3.170717 TGGAGTACCACTACTTCCAAGG 58.829 50.000 0.00 0.00 41.77 3.61
2959 4233 0.261991 AAGATCAGAGGCCCCGAGTA 59.738 55.000 0.00 0.00 0.00 2.59
2969 4243 2.479389 GGAGCGACAGTCAAGATCAGAG 60.479 54.545 0.41 0.00 0.00 3.35
3006 4285 1.518903 GGACTGGAGTGCTTGGCAAC 61.519 60.000 0.00 0.00 41.47 4.17
3122 4422 2.584608 GCTAGGCCACCACGACAT 59.415 61.111 5.01 0.00 0.00 3.06
3228 4531 9.398170 GTTTTTAGTAGTACACGTTCATGACTA 57.602 33.333 2.52 0.00 0.00 2.59
3247 4550 5.099575 GGTATTGGCCATTCACGTTTTTAG 58.900 41.667 6.09 0.00 0.00 1.85
3248 4551 4.767928 AGGTATTGGCCATTCACGTTTTTA 59.232 37.500 6.09 0.00 0.00 1.52
3249 4552 3.576550 AGGTATTGGCCATTCACGTTTTT 59.423 39.130 6.09 0.00 0.00 1.94
3259 4562 1.203174 GCCCCATTAGGTATTGGCCAT 60.203 52.381 6.09 0.00 32.74 4.40
3260 4563 0.187361 GCCCCATTAGGTATTGGCCA 59.813 55.000 0.00 0.00 32.74 5.36
3269 4572 0.390860 CGACTCTCTGCCCCATTAGG 59.609 60.000 0.00 0.00 0.00 2.69
3290 4593 1.291272 CAAAAGCAAGGCCTCCTGC 59.709 57.895 19.92 19.92 40.16 4.85
3291 4594 1.291272 GCAAAAGCAAGGCCTCCTG 59.709 57.895 5.23 1.88 32.13 3.86
3304 4607 8.128582 GGAGAATATGATCGTAAATGTGCAAAA 58.871 33.333 0.00 0.00 0.00 2.44
3443 4748 3.932710 TGCAAGGACAACGAATCATCTAC 59.067 43.478 0.00 0.00 0.00 2.59
3444 4749 4.200838 TGCAAGGACAACGAATCATCTA 57.799 40.909 0.00 0.00 0.00 1.98
3445 4750 3.057969 TGCAAGGACAACGAATCATCT 57.942 42.857 0.00 0.00 0.00 2.90
3446 4751 3.189287 ACTTGCAAGGACAACGAATCATC 59.811 43.478 29.18 0.00 0.00 2.92
3447 4752 3.149196 ACTTGCAAGGACAACGAATCAT 58.851 40.909 29.18 1.39 0.00 2.45
3452 4757 0.878523 CGGACTTGCAAGGACAACGA 60.879 55.000 29.18 0.00 0.00 3.85
3494 4799 4.431131 AGCCGGGCTGAATGGTGG 62.431 66.667 23.19 0.00 37.57 4.61
3497 4802 1.039233 AAATGAGCCGGGCTGAATGG 61.039 55.000 29.31 0.00 39.88 3.16
3508 4813 2.297033 TCAAACAAGCCTCAAATGAGCC 59.703 45.455 4.87 0.00 40.75 4.70
3524 4836 2.660189 TAAGACCCGGACGATCAAAC 57.340 50.000 0.73 0.00 0.00 2.93
3536 4848 3.898741 AGATCCGGAGAAAGATAAGACCC 59.101 47.826 11.34 0.00 0.00 4.46
3564 4876 1.529010 CACAAAGGAGGCAGGCACA 60.529 57.895 0.00 0.00 0.00 4.57
3569 4881 1.673168 GATAGGCACAAAGGAGGCAG 58.327 55.000 0.00 0.00 32.54 4.85
3598 4911 1.447838 CGGCAAGTGGTCGCTGTAT 60.448 57.895 0.00 0.00 38.05 2.29
3599 4912 2.048597 CGGCAAGTGGTCGCTGTA 60.049 61.111 0.00 0.00 38.05 2.74
3690 5003 1.683938 GGTAACTATGCGGCCCCTTTT 60.684 52.381 0.00 0.00 0.00 2.27
3694 5007 1.525306 GTGGTAACTATGCGGCCCC 60.525 63.158 0.00 0.00 37.61 5.80
3868 5191 3.600388 CTTCGTTGCAGTCCCTATCTTT 58.400 45.455 0.00 0.00 0.00 2.52
3869 5192 2.678190 GCTTCGTTGCAGTCCCTATCTT 60.678 50.000 0.00 0.00 0.00 2.40
3870 5193 1.134670 GCTTCGTTGCAGTCCCTATCT 60.135 52.381 0.00 0.00 0.00 1.98
3899 5224 4.227134 AGGCAGCTATCACGGGCG 62.227 66.667 0.00 0.00 0.00 6.13
3900 5225 2.590007 CAGGCAGCTATCACGGGC 60.590 66.667 0.00 0.00 0.00 6.13
3901 5226 1.971505 TTCCAGGCAGCTATCACGGG 61.972 60.000 0.00 0.00 0.00 5.28
3902 5227 0.531532 CTTCCAGGCAGCTATCACGG 60.532 60.000 0.00 0.00 0.00 4.94
3903 5228 1.156645 GCTTCCAGGCAGCTATCACG 61.157 60.000 3.42 0.00 34.15 4.35
3904 5229 0.179936 AGCTTCCAGGCAGCTATCAC 59.820 55.000 12.59 0.00 46.18 3.06
3905 5230 1.690893 CTAGCTTCCAGGCAGCTATCA 59.309 52.381 19.89 1.71 46.46 2.15
4008 5337 2.429236 CAACGACGACGAGCAGCT 60.429 61.111 15.32 0.00 42.66 4.24
4020 5350 1.600013 CGGTGTCCAAATTGTCAACGA 59.400 47.619 16.39 0.00 42.49 3.85
4038 5368 1.065928 GACGATGGCTACCACTCGG 59.934 63.158 16.91 0.00 38.16 4.63
4039 5369 1.298413 CGACGATGGCTACCACTCG 60.298 63.158 13.32 13.32 39.00 4.18
4066 5401 3.669122 CACGAGGCAATAATAGCGTACTC 59.331 47.826 0.00 0.00 0.00 2.59
4103 5438 5.308825 ACCATACTCAAATACTAGCATGGC 58.691 41.667 0.00 0.00 39.38 4.40
4194 6756 1.535462 CCTTGTTCCCATTCACGTCAC 59.465 52.381 0.00 0.00 0.00 3.67
4274 7902 3.803778 GTCACCTGCAAGAAAACCAAATG 59.196 43.478 0.00 0.00 34.07 2.32
4275 7903 3.490761 CGTCACCTGCAAGAAAACCAAAT 60.491 43.478 0.00 0.00 34.07 2.32
4283 7911 0.468226 AGGAACGTCACCTGCAAGAA 59.532 50.000 12.45 0.00 36.30 2.52
4480 8828 4.329545 GGGTGCTCGAAGGTGGCA 62.330 66.667 0.00 0.00 0.00 4.92
5173 9524 0.739462 TGAAAGGCGCATCACCGTAG 60.739 55.000 10.83 0.00 0.00 3.51
5229 9589 6.516718 GTTATGATACAGCACTCCACACTAT 58.483 40.000 0.00 0.00 0.00 2.12
5230 9590 5.449999 CGTTATGATACAGCACTCCACACTA 60.450 44.000 0.00 0.00 0.00 2.74
5231 9591 4.678044 CGTTATGATACAGCACTCCACACT 60.678 45.833 0.00 0.00 0.00 3.55
5267 9634 1.006102 AGCAACCTCGACACTTCCG 60.006 57.895 0.00 0.00 0.00 4.30
5312 9679 2.614057 GCCCACAATGTCACATAGTAGC 59.386 50.000 0.00 0.00 0.00 3.58
5379 9746 4.906747 ATGAGTTCTTTTCCAGAGAGCT 57.093 40.909 0.00 0.00 37.40 4.09
5387 9754 5.787380 AGGATTGCAAATGAGTTCTTTTCC 58.213 37.500 1.71 0.71 0.00 3.13
5388 9755 7.820648 TCTAGGATTGCAAATGAGTTCTTTTC 58.179 34.615 1.71 0.00 0.00 2.29
5418 9791 0.179119 GTGCAGATGATGGCAAAGGC 60.179 55.000 0.00 0.00 42.45 4.35
5421 9794 3.555377 CCTTTTGTGCAGATGATGGCAAA 60.555 43.478 0.00 0.00 42.45 3.68
5423 9796 1.546923 CCTTTTGTGCAGATGATGGCA 59.453 47.619 0.00 0.00 37.77 4.92
5424 9797 1.820519 TCCTTTTGTGCAGATGATGGC 59.179 47.619 0.00 0.00 0.00 4.40
5430 9803 3.863400 GCAATTGCTCCTTTTGTGCAGAT 60.863 43.478 23.21 0.00 38.01 2.90
5450 9823 5.565592 CACTTCTGTGCCAAATAATAGCA 57.434 39.130 0.00 0.00 37.38 3.49
5481 9884 6.803154 AACAGAAATGCTAAACCTACTCAC 57.197 37.500 0.00 0.00 0.00 3.51
5652 10063 4.841422 ACATCAAACATGAGAAGGGAGAG 58.159 43.478 0.00 0.00 0.00 3.20
5787 10198 2.586425 CTGGACTTCAAATGTGGTGGT 58.414 47.619 0.00 0.00 0.00 4.16
5842 10253 6.817765 TTAGCAGGGAAATCAGTAGTTTTG 57.182 37.500 0.00 0.00 0.00 2.44
5861 10273 9.294030 CCATCAGTGTTTATTGAGAAAATTAGC 57.706 33.333 0.00 0.00 0.00 3.09
5882 10294 2.869101 TCGTCCCAAATTGACCATCA 57.131 45.000 0.00 0.00 0.00 3.07
5883 10295 4.718940 AATTCGTCCCAAATTGACCATC 57.281 40.909 0.00 0.00 0.00 3.51
5928 10340 1.484653 CATGTGGACCGGAATAGTGGA 59.515 52.381 9.46 0.00 0.00 4.02
5934 10346 1.378514 GTGCCATGTGGACCGGAAT 60.379 57.895 9.46 0.00 37.39 3.01
5938 10350 1.401552 CATTTAGTGCCATGTGGACCG 59.598 52.381 2.55 0.00 37.39 4.79
5964 10376 2.352342 ACTTAACGGTCAACAAACGGTG 59.648 45.455 0.00 0.00 33.54 4.94
5985 10397 2.851045 GGTGGGCCCTCCTTTCAA 59.149 61.111 31.98 2.37 36.20 2.69
6005 10417 4.813750 TTGAGAGAGATGACAATGCTGA 57.186 40.909 0.00 0.00 0.00 4.26
6006 10418 4.094590 GGTTTGAGAGAGATGACAATGCTG 59.905 45.833 0.00 0.00 0.00 4.41
6007 10419 4.019501 AGGTTTGAGAGAGATGACAATGCT 60.020 41.667 0.00 0.00 0.00 3.79
6008 10420 4.260170 AGGTTTGAGAGAGATGACAATGC 58.740 43.478 0.00 0.00 0.00 3.56
6029 10441 1.340502 GCCCCCAAGGAGAAGAAGAAG 60.341 57.143 0.00 0.00 38.24 2.85
6037 10449 1.145900 TTGGAATGCCCCCAAGGAGA 61.146 55.000 0.00 0.00 38.64 3.71
6119 10531 2.047274 TCCTACTGTTGCCAGCGC 60.047 61.111 0.00 0.00 42.81 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.