Multiple sequence alignment - TraesCS5D01G230100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G230100 chr5D 100.000 4343 0 0 1 4343 337219717 337215375 0.000000e+00 8021.0
1 TraesCS5D01G230100 chr5D 89.008 1301 123 11 889 2176 337186126 337184833 0.000000e+00 1592.0
2 TraesCS5D01G230100 chr5D 91.565 1067 80 1 3287 4343 337184155 337183089 0.000000e+00 1463.0
3 TraesCS5D01G230100 chr5D 89.740 653 58 3 2633 3284 337184837 337184193 0.000000e+00 826.0
4 TraesCS5D01G230100 chr5D 85.797 345 19 11 57 377 337187093 337186755 5.380000e-89 339.0
5 TraesCS5D01G230100 chr5D 100.000 89 0 0 456 544 337186822 337186734 9.660000e-37 165.0
6 TraesCS5D01G230100 chr5D 96.203 79 3 0 375 453 464002640 464002718 3.520000e-26 130.0
7 TraesCS5D01G230100 chr5D 97.183 71 2 0 383 453 406478466 406478396 2.120000e-23 121.0
8 TraesCS5D01G230100 chr5D 98.214 56 1 0 322 377 337219250 337219195 9.940000e-17 99.0
9 TraesCS5D01G230100 chr5D 98.214 56 1 0 468 523 337219396 337219341 9.940000e-17 99.0
10 TraesCS5D01G230100 chr5B 91.680 2500 122 19 1155 3598 395709729 395707260 0.000000e+00 3386.0
11 TraesCS5D01G230100 chr5B 92.178 1304 86 8 889 2176 395684236 395682933 0.000000e+00 1829.0
12 TraesCS5D01G230100 chr5B 93.364 1070 55 9 3287 4343 395682255 395681189 0.000000e+00 1568.0
13 TraesCS5D01G230100 chr5B 95.593 658 20 3 2633 3289 395682937 395682288 0.000000e+00 1046.0
14 TraesCS5D01G230100 chr5B 95.050 303 11 2 3821 4119 395707262 395706960 1.410000e-129 473.0
15 TraesCS5D01G230100 chr5B 93.458 321 15 5 57 377 395710858 395710544 5.080000e-129 472.0
16 TraesCS5D01G230100 chr5B 85.507 345 20 11 57 377 395685079 395684741 2.500000e-87 333.0
17 TraesCS5D01G230100 chr5B 84.211 342 22 11 456 766 395684808 395684468 1.960000e-78 303.0
18 TraesCS5D01G230100 chr5B 82.831 332 31 12 811 1123 395710255 395709931 1.540000e-69 274.0
19 TraesCS5D01G230100 chr5B 85.882 255 15 5 468 704 395710599 395710348 7.210000e-63 252.0
20 TraesCS5D01G230100 chr5B 75.457 383 61 20 2256 2612 491973488 491973863 5.820000e-34 156.0
21 TraesCS5D01G230100 chr5B 75.354 353 58 22 2284 2612 37709463 37709810 4.530000e-30 143.0
22 TraesCS5D01G230100 chr5B 84.821 112 8 7 811 916 395684373 395684265 2.140000e-18 104.0
23 TraesCS5D01G230100 chr5B 96.364 55 1 1 1 54 395685180 395685126 5.980000e-14 89.8
24 TraesCS5D01G230100 chr5A 94.961 1151 46 1 1038 2176 438410848 438409698 0.000000e+00 1794.0
25 TraesCS5D01G230100 chr5A 90.710 1324 73 15 901 2175 438357885 438356563 0.000000e+00 1718.0
26 TraesCS5D01G230100 chr5A 93.744 1055 56 1 3287 4331 438355884 438354830 0.000000e+00 1574.0
27 TraesCS5D01G230100 chr5A 93.100 1058 60 2 3287 4343 438409020 438407975 0.000000e+00 1537.0
28 TraesCS5D01G230100 chr5A 95.137 658 23 3 2633 3289 438356566 438355917 0.000000e+00 1029.0
29 TraesCS5D01G230100 chr5A 90.122 658 56 3 2633 3289 438409702 438409053 0.000000e+00 846.0
30 TraesCS5D01G230100 chr5A 88.983 590 15 10 468 1015 438412342 438411761 0.000000e+00 684.0
31 TraesCS5D01G230100 chr5A 92.105 380 9 7 1 377 438412648 438412287 2.320000e-142 516.0
32 TraesCS5D01G230100 chr5A 86.087 345 18 9 57 377 438358749 438358411 1.160000e-90 344.0
33 TraesCS5D01G230100 chr5A 82.609 345 25 10 456 766 438358478 438358135 5.530000e-69 272.0
34 TraesCS5D01G230100 chr5A 85.714 112 8 6 811 916 438358040 438357931 1.280000e-20 111.0
35 TraesCS5D01G230100 chr7A 78.333 480 72 25 2177 2634 634306760 634307229 9.200000e-72 281.0
36 TraesCS5D01G230100 chr7A 77.664 488 76 18 2177 2634 658883987 658884471 2.570000e-67 267.0
37 TraesCS5D01G230100 chr7A 94.937 79 4 0 383 461 729579358 729579436 1.640000e-24 124.0
38 TraesCS5D01G230100 chr7A 94.737 76 4 0 378 453 43057370 43057295 7.630000e-23 119.0
39 TraesCS5D01G230100 chr7A 93.421 76 5 0 378 453 43059536 43059461 3.550000e-21 113.0
40 TraesCS5D01G230100 chr7B 75.855 497 74 30 2177 2634 626036834 626037323 1.220000e-50 211.0
41 TraesCS5D01G230100 chr7B 77.600 375 55 23 2256 2612 552134089 552134452 2.650000e-47 200.0
42 TraesCS5D01G230100 chr7B 76.702 382 56 26 2256 2612 552137809 552138182 9.590000e-42 182.0
43 TraesCS5D01G230100 chr7B 79.681 251 39 9 2369 2612 708570862 708570617 2.080000e-38 171.0
44 TraesCS5D01G230100 chr7B 75.654 382 59 27 2256 2612 552135944 552136316 4.500000e-35 159.0
45 TraesCS5D01G230100 chr3B 76.945 347 53 20 2289 2612 46583882 46584224 5.770000e-39 172.0
46 TraesCS5D01G230100 chr3B 95.714 70 3 0 375 444 284384782 284384851 3.550000e-21 113.0
47 TraesCS5D01G230100 chr4D 96.053 76 3 0 378 453 375385587 375385512 1.640000e-24 124.0
48 TraesCS5D01G230100 chr4B 92.500 80 5 1 378 456 389110861 389110782 3.550000e-21 113.0
49 TraesCS5D01G230100 chr1B 93.421 76 5 0 375 450 303227638 303227713 3.550000e-21 113.0
50 TraesCS5D01G230100 chr6B 86.047 86 9 2 2174 2256 565615378 565615293 5.980000e-14 89.8
51 TraesCS5D01G230100 chr6D 83.721 86 11 2 2174 2256 471797818 471797733 1.290000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G230100 chr5D 337215375 337219717 4342 True 2739.666667 8021 98.809333 1 4343 3 chr5D.!!$R3 4342
1 TraesCS5D01G230100 chr5D 337183089 337187093 4004 True 877.000000 1592 91.222000 57 4343 5 chr5D.!!$R2 4286
2 TraesCS5D01G230100 chr5B 395706960 395710858 3898 True 971.400000 3386 89.780200 57 4119 5 chr5B.!!$R2 4062
3 TraesCS5D01G230100 chr5B 395681189 395685180 3991 True 753.257143 1829 90.291143 1 4343 7 chr5B.!!$R1 4342
4 TraesCS5D01G230100 chr5A 438407975 438412648 4673 True 1075.400000 1794 91.854200 1 4343 5 chr5A.!!$R2 4342
5 TraesCS5D01G230100 chr5A 438354830 438358749 3919 True 841.333333 1718 89.000167 57 4331 6 chr5A.!!$R1 4274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 281 0.105401 TGATGGGGCCAGACCGTATA 60.105 55.0 4.39 0.0 40.62 1.47 F
448 512 0.106116 CCGGTAGAACCCTAGCTCCT 60.106 60.0 0.00 0.0 40.31 3.69 F
2288 4224 0.879839 TGTGTGCATGACCGAGTGTG 60.880 55.0 0.00 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 3357 0.766131 TGGGAGTTTTCCGGTTAGCA 59.234 50.0 0.0 0.0 45.04 3.49 R
2293 4229 0.108992 CTCGCTAACTAACCCACGCA 60.109 55.0 0.0 0.0 0.00 5.24 R
3826 5803 0.108567 GCTCTTGGTCGAGTTCCCTC 60.109 60.0 0.0 0.0 33.55 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.723942 ACTCATTTAATAACAGCCTTAGACTG 57.276 34.615 0.00 0.00 41.08 3.51
161 214 3.753294 AGGTCACACTTGTAGGTTGAG 57.247 47.619 0.00 0.00 0.00 3.02
220 279 1.383943 ATGATGGGGCCAGACCGTA 60.384 57.895 4.39 0.00 40.62 4.02
221 280 0.768221 ATGATGGGGCCAGACCGTAT 60.768 55.000 4.39 0.00 40.62 3.06
222 281 0.105401 TGATGGGGCCAGACCGTATA 60.105 55.000 4.39 0.00 40.62 1.47
281 340 3.904136 AATGTGGCTTTTCTCTGAACG 57.096 42.857 0.00 0.00 0.00 3.95
294 353 6.576662 TTCTCTGAACGTTTGAGAGATAGT 57.423 37.500 28.03 0.00 41.41 2.12
296 355 4.486090 TCTGAACGTTTGAGAGATAGTGC 58.514 43.478 0.46 0.00 0.00 4.40
321 385 3.900892 CACGATAGACGCCCCGCT 61.901 66.667 0.00 0.00 46.94 5.52
322 386 2.203252 ACGATAGACGCCCCGCTA 60.203 61.111 0.00 0.00 46.94 4.26
323 387 2.254651 CGATAGACGCCCCGCTAC 59.745 66.667 0.00 0.00 39.76 3.58
324 388 2.259439 CGATAGACGCCCCGCTACT 61.259 63.158 0.00 0.00 39.76 2.57
325 389 1.580437 GATAGACGCCCCGCTACTC 59.420 63.158 0.00 0.00 0.00 2.59
326 390 0.890090 GATAGACGCCCCGCTACTCT 60.890 60.000 0.00 0.00 0.00 3.24
327 391 1.173444 ATAGACGCCCCGCTACTCTG 61.173 60.000 0.00 0.00 0.00 3.35
328 392 4.874977 GACGCCCCGCTACTCTGC 62.875 72.222 0.00 0.00 0.00 4.26
330 394 3.217017 CGCCCCGCTACTCTGCTA 61.217 66.667 0.00 0.00 0.00 3.49
331 395 2.731374 GCCCCGCTACTCTGCTAG 59.269 66.667 0.00 0.00 0.00 3.42
332 396 2.128507 GCCCCGCTACTCTGCTAGT 61.129 63.158 0.00 0.00 42.62 2.57
333 397 2.034607 CCCCGCTACTCTGCTAGTC 58.965 63.158 0.00 0.00 39.80 2.59
334 398 0.466555 CCCCGCTACTCTGCTAGTCT 60.467 60.000 0.00 0.00 39.80 3.24
335 399 0.948678 CCCGCTACTCTGCTAGTCTC 59.051 60.000 0.00 0.00 39.80 3.36
336 400 1.476110 CCCGCTACTCTGCTAGTCTCT 60.476 57.143 0.00 0.00 39.80 3.10
337 401 1.601903 CCGCTACTCTGCTAGTCTCTG 59.398 57.143 0.00 0.00 39.80 3.35
338 402 1.601903 CGCTACTCTGCTAGTCTCTGG 59.398 57.143 0.00 0.00 39.80 3.86
339 403 2.650322 GCTACTCTGCTAGTCTCTGGT 58.350 52.381 0.00 0.00 39.80 4.00
340 404 2.357637 GCTACTCTGCTAGTCTCTGGTG 59.642 54.545 0.00 0.00 39.80 4.17
341 405 1.846007 ACTCTGCTAGTCTCTGGTGG 58.154 55.000 0.00 0.00 30.33 4.61
342 406 1.356059 ACTCTGCTAGTCTCTGGTGGA 59.644 52.381 0.00 0.00 30.33 4.02
343 407 2.024464 ACTCTGCTAGTCTCTGGTGGAT 60.024 50.000 0.00 0.00 30.33 3.41
344 408 2.361757 CTCTGCTAGTCTCTGGTGGATG 59.638 54.545 0.00 0.00 0.00 3.51
345 409 2.106566 CTGCTAGTCTCTGGTGGATGT 58.893 52.381 0.00 0.00 0.00 3.06
346 410 2.499289 CTGCTAGTCTCTGGTGGATGTT 59.501 50.000 0.00 0.00 0.00 2.71
347 411 3.701542 CTGCTAGTCTCTGGTGGATGTTA 59.298 47.826 0.00 0.00 0.00 2.41
348 412 3.701542 TGCTAGTCTCTGGTGGATGTTAG 59.298 47.826 0.00 0.00 0.00 2.34
349 413 3.491792 GCTAGTCTCTGGTGGATGTTAGC 60.492 52.174 0.00 0.00 0.00 3.09
350 414 1.834263 AGTCTCTGGTGGATGTTAGCC 59.166 52.381 0.00 0.00 0.00 3.93
351 415 1.834263 GTCTCTGGTGGATGTTAGCCT 59.166 52.381 0.00 0.00 0.00 4.58
352 416 1.833630 TCTCTGGTGGATGTTAGCCTG 59.166 52.381 0.00 0.00 0.00 4.85
353 417 1.833630 CTCTGGTGGATGTTAGCCTGA 59.166 52.381 0.00 0.00 0.00 3.86
354 418 2.237143 CTCTGGTGGATGTTAGCCTGAA 59.763 50.000 0.00 0.00 0.00 3.02
355 419 2.642311 TCTGGTGGATGTTAGCCTGAAA 59.358 45.455 0.00 0.00 0.00 2.69
356 420 2.749621 CTGGTGGATGTTAGCCTGAAAC 59.250 50.000 0.00 0.00 0.00 2.78
357 421 2.092323 GGTGGATGTTAGCCTGAAACC 58.908 52.381 0.00 0.00 0.00 3.27
358 422 2.554344 GGTGGATGTTAGCCTGAAACCA 60.554 50.000 0.00 0.00 0.00 3.67
359 423 2.749621 GTGGATGTTAGCCTGAAACCAG 59.250 50.000 0.00 0.00 0.00 4.00
360 424 2.642311 TGGATGTTAGCCTGAAACCAGA 59.358 45.455 0.00 0.00 33.56 3.86
361 425 3.266772 TGGATGTTAGCCTGAAACCAGAT 59.733 43.478 0.00 0.00 33.56 2.90
362 426 4.473196 TGGATGTTAGCCTGAAACCAGATA 59.527 41.667 0.00 0.00 33.56 1.98
363 427 5.045213 TGGATGTTAGCCTGAAACCAGATAA 60.045 40.000 0.00 0.00 33.56 1.75
364 428 6.064717 GGATGTTAGCCTGAAACCAGATAAT 58.935 40.000 0.00 0.00 33.56 1.28
365 429 6.547510 GGATGTTAGCCTGAAACCAGATAATT 59.452 38.462 0.00 0.00 33.56 1.40
366 430 6.757897 TGTTAGCCTGAAACCAGATAATTG 57.242 37.500 0.00 0.00 33.56 2.32
367 431 6.480763 TGTTAGCCTGAAACCAGATAATTGA 58.519 36.000 0.00 0.00 33.56 2.57
368 432 6.599244 TGTTAGCCTGAAACCAGATAATTGAG 59.401 38.462 0.00 0.00 33.56 3.02
369 433 5.441718 AGCCTGAAACCAGATAATTGAGA 57.558 39.130 0.00 0.00 33.56 3.27
370 434 6.011122 AGCCTGAAACCAGATAATTGAGAT 57.989 37.500 0.00 0.00 33.56 2.75
371 435 5.826737 AGCCTGAAACCAGATAATTGAGATG 59.173 40.000 0.00 0.00 33.56 2.90
372 436 5.824624 GCCTGAAACCAGATAATTGAGATGA 59.175 40.000 0.00 0.00 33.56 2.92
373 437 6.238593 GCCTGAAACCAGATAATTGAGATGAC 60.239 42.308 0.00 0.00 33.56 3.06
374 438 6.261826 CCTGAAACCAGATAATTGAGATGACC 59.738 42.308 0.00 0.00 33.56 4.02
375 439 6.122277 TGAAACCAGATAATTGAGATGACCC 58.878 40.000 0.00 0.00 0.00 4.46
376 440 5.715439 AACCAGATAATTGAGATGACCCA 57.285 39.130 0.00 0.00 0.00 4.51
377 441 5.041191 ACCAGATAATTGAGATGACCCAC 57.959 43.478 0.00 0.00 0.00 4.61
378 442 4.060900 CCAGATAATTGAGATGACCCACG 58.939 47.826 0.00 0.00 0.00 4.94
379 443 4.202253 CCAGATAATTGAGATGACCCACGA 60.202 45.833 0.00 0.00 0.00 4.35
380 444 4.987285 CAGATAATTGAGATGACCCACGAG 59.013 45.833 0.00 0.00 0.00 4.18
381 445 4.895889 AGATAATTGAGATGACCCACGAGA 59.104 41.667 0.00 0.00 0.00 4.04
382 446 5.541868 AGATAATTGAGATGACCCACGAGAT 59.458 40.000 0.00 0.00 0.00 2.75
383 447 3.742433 ATTGAGATGACCCACGAGATC 57.258 47.619 0.00 0.00 0.00 2.75
384 448 1.025041 TGAGATGACCCACGAGATCG 58.975 55.000 0.00 0.00 46.33 3.69
399 463 3.371063 TCGTCCACGACCAGCTCC 61.371 66.667 0.00 0.00 44.22 4.70
400 464 4.436998 CGTCCACGACCAGCTCCC 62.437 72.222 0.00 0.00 43.02 4.30
401 465 2.997897 GTCCACGACCAGCTCCCT 60.998 66.667 0.00 0.00 0.00 4.20
402 466 2.997315 TCCACGACCAGCTCCCTG 60.997 66.667 0.00 0.00 38.85 4.45
403 467 4.767255 CCACGACCAGCTCCCTGC 62.767 72.222 0.00 0.00 43.29 4.85
412 476 2.911928 GCTCCCTGCTTCCCCTAC 59.088 66.667 0.00 0.00 38.95 3.18
413 477 1.995626 GCTCCCTGCTTCCCCTACA 60.996 63.158 0.00 0.00 38.95 2.74
414 478 1.562672 GCTCCCTGCTTCCCCTACAA 61.563 60.000 0.00 0.00 38.95 2.41
415 479 0.253327 CTCCCTGCTTCCCCTACAAC 59.747 60.000 0.00 0.00 0.00 3.32
416 480 1.205460 TCCCTGCTTCCCCTACAACC 61.205 60.000 0.00 0.00 0.00 3.77
417 481 1.208165 CCCTGCTTCCCCTACAACCT 61.208 60.000 0.00 0.00 0.00 3.50
418 482 0.253327 CCTGCTTCCCCTACAACCTC 59.747 60.000 0.00 0.00 0.00 3.85
419 483 0.253327 CTGCTTCCCCTACAACCTCC 59.747 60.000 0.00 0.00 0.00 4.30
420 484 1.221021 GCTTCCCCTACAACCTCCG 59.779 63.158 0.00 0.00 0.00 4.63
421 485 1.905512 CTTCCCCTACAACCTCCGG 59.094 63.158 0.00 0.00 0.00 5.14
422 486 2.253403 CTTCCCCTACAACCTCCGGC 62.253 65.000 0.00 0.00 0.00 6.13
423 487 3.793888 CCCCTACAACCTCCGGCC 61.794 72.222 0.00 0.00 0.00 6.13
424 488 2.687566 CCCTACAACCTCCGGCCT 60.688 66.667 0.00 0.00 0.00 5.19
425 489 1.382146 CCCTACAACCTCCGGCCTA 60.382 63.158 0.00 0.00 0.00 3.93
426 490 1.400530 CCCTACAACCTCCGGCCTAG 61.401 65.000 0.00 0.00 0.00 3.02
427 491 0.396695 CCTACAACCTCCGGCCTAGA 60.397 60.000 0.00 0.00 0.00 2.43
428 492 0.745468 CTACAACCTCCGGCCTAGAC 59.255 60.000 0.00 0.00 0.00 2.59
429 493 0.685458 TACAACCTCCGGCCTAGACC 60.685 60.000 0.00 0.00 0.00 3.85
430 494 2.365237 AACCTCCGGCCTAGACCC 60.365 66.667 0.00 0.00 0.00 4.46
431 495 4.835891 ACCTCCGGCCTAGACCCG 62.836 72.222 13.03 13.03 45.17 5.28
436 500 2.194056 CGGCCTAGACCCGGTAGA 59.806 66.667 12.37 0.00 41.99 2.59
437 501 1.454479 CGGCCTAGACCCGGTAGAA 60.454 63.158 12.37 0.00 41.99 2.10
438 502 1.732417 CGGCCTAGACCCGGTAGAAC 61.732 65.000 12.37 0.00 41.99 3.01
439 503 1.398174 GGCCTAGACCCGGTAGAACC 61.398 65.000 0.00 0.00 34.05 3.62
440 504 1.398174 GCCTAGACCCGGTAGAACCC 61.398 65.000 0.00 0.00 33.75 4.11
441 505 0.261109 CCTAGACCCGGTAGAACCCT 59.739 60.000 0.00 0.00 33.75 4.34
442 506 1.496429 CCTAGACCCGGTAGAACCCTA 59.504 57.143 0.00 0.00 33.75 3.53
443 507 2.488710 CCTAGACCCGGTAGAACCCTAG 60.489 59.091 0.00 0.00 33.75 3.02
444 508 0.396835 AGACCCGGTAGAACCCTAGC 60.397 60.000 0.00 0.00 39.38 3.42
445 509 0.396835 GACCCGGTAGAACCCTAGCT 60.397 60.000 0.00 0.00 40.31 3.32
446 510 0.396835 ACCCGGTAGAACCCTAGCTC 60.397 60.000 0.00 0.00 40.31 4.09
447 511 1.114119 CCCGGTAGAACCCTAGCTCC 61.114 65.000 0.00 0.00 40.31 4.70
448 512 0.106116 CCGGTAGAACCCTAGCTCCT 60.106 60.000 0.00 0.00 40.31 3.69
449 513 1.144503 CCGGTAGAACCCTAGCTCCTA 59.855 57.143 0.00 0.00 40.31 2.94
450 514 2.423947 CCGGTAGAACCCTAGCTCCTAA 60.424 54.545 0.00 0.00 40.31 2.69
451 515 2.622470 CGGTAGAACCCTAGCTCCTAAC 59.378 54.545 0.00 0.00 40.31 2.34
452 516 3.639952 GGTAGAACCCTAGCTCCTAACA 58.360 50.000 0.00 0.00 39.59 2.41
453 517 3.384146 GGTAGAACCCTAGCTCCTAACAC 59.616 52.174 0.00 0.00 39.59 3.32
454 518 2.468915 AGAACCCTAGCTCCTAACACC 58.531 52.381 0.00 0.00 0.00 4.16
621 811 1.474677 GCACATATGTGGAGCTGCTCT 60.475 52.381 31.63 11.56 45.72 4.09
641 847 6.070767 TGCTCTGCTTAAACTAACCAGATAGT 60.071 38.462 0.00 0.00 37.73 2.12
642 848 7.123697 TGCTCTGCTTAAACTAACCAGATAGTA 59.876 37.037 0.00 0.00 35.09 1.82
643 849 8.145122 GCTCTGCTTAAACTAACCAGATAGTAT 58.855 37.037 0.00 0.00 35.09 2.12
722 956 5.353394 TGGAGTCAATACATAACCAGGTC 57.647 43.478 0.00 0.00 0.00 3.85
884 1171 4.763355 AGACAGATAACCCCAGCCATATA 58.237 43.478 0.00 0.00 0.00 0.86
1142 2557 4.331443 CGATCCATCTCTAGTACATCGAGG 59.669 50.000 0.00 0.00 34.88 4.63
1143 2558 4.708576 TCCATCTCTAGTACATCGAGGT 57.291 45.455 8.21 8.21 0.00 3.85
1144 2559 4.643463 TCCATCTCTAGTACATCGAGGTC 58.357 47.826 5.75 0.00 0.00 3.85
1145 2560 3.433957 CCATCTCTAGTACATCGAGGTCG 59.566 52.174 5.75 0.00 41.45 4.79
1358 2801 3.148279 GGGCTGGGACGATCGTCT 61.148 66.667 38.48 13.13 44.04 4.18
1430 2879 1.959226 TTGAAACGCTCGCTCACCC 60.959 57.895 0.00 0.00 0.00 4.61
1548 2997 4.356979 CCTCTCCCTAGGCGACAA 57.643 61.111 2.05 0.00 0.00 3.18
1737 3186 2.354401 CCCTCTCTGAGCTGGCGAA 61.354 63.158 0.00 0.00 0.00 4.70
1908 3357 2.906389 TGCTCAACCTCTACTCCAACAT 59.094 45.455 0.00 0.00 0.00 2.71
2022 3471 2.941333 CATCATAGCGGGCAAGCG 59.059 61.111 0.00 0.00 43.00 4.68
2178 4114 4.988598 CGGTCGGCTGCCAAGTGT 62.989 66.667 20.29 0.00 0.00 3.55
2179 4115 2.345991 GGTCGGCTGCCAAGTGTA 59.654 61.111 20.29 0.00 0.00 2.90
2180 4116 1.741770 GGTCGGCTGCCAAGTGTAG 60.742 63.158 20.29 0.00 0.00 2.74
2181 4117 1.741770 GTCGGCTGCCAAGTGTAGG 60.742 63.158 20.29 0.00 0.00 3.18
2182 4118 2.436646 CGGCTGCCAAGTGTAGGG 60.437 66.667 20.29 0.00 0.00 3.53
2282 4218 4.428922 CGCGTGTGTGCATGACCG 62.429 66.667 0.00 0.00 33.58 4.79
2283 4219 3.041351 GCGTGTGTGCATGACCGA 61.041 61.111 0.00 0.00 33.58 4.69
2284 4220 3.015293 GCGTGTGTGCATGACCGAG 62.015 63.158 0.00 0.00 33.58 4.63
2285 4221 1.664649 CGTGTGTGCATGACCGAGT 60.665 57.895 0.00 0.00 33.58 4.18
2286 4222 1.862123 GTGTGTGCATGACCGAGTG 59.138 57.895 0.00 0.00 0.00 3.51
2287 4223 0.880278 GTGTGTGCATGACCGAGTGT 60.880 55.000 0.00 0.00 0.00 3.55
2288 4224 0.879839 TGTGTGCATGACCGAGTGTG 60.880 55.000 0.00 0.00 0.00 3.82
2289 4225 0.880278 GTGTGCATGACCGAGTGTGT 60.880 55.000 0.00 0.00 0.00 3.72
2290 4226 0.879839 TGTGCATGACCGAGTGTGTG 60.880 55.000 0.00 0.00 0.00 3.82
2291 4227 1.960763 TGCATGACCGAGTGTGTGC 60.961 57.895 0.00 0.00 36.32 4.57
2292 4228 3.015293 GCATGACCGAGTGTGTGCG 62.015 63.158 0.00 0.00 0.00 5.34
2293 4229 1.664649 CATGACCGAGTGTGTGCGT 60.665 57.895 0.00 0.00 0.00 5.24
2294 4230 1.664649 ATGACCGAGTGTGTGCGTG 60.665 57.895 0.00 0.00 0.00 5.34
2295 4231 3.702555 GACCGAGTGTGTGCGTGC 61.703 66.667 0.00 0.00 0.00 5.34
2298 4234 4.339809 CGAGTGTGTGCGTGCGTG 62.340 66.667 0.00 0.00 0.00 5.34
2299 4235 4.000557 GAGTGTGTGCGTGCGTGG 62.001 66.667 0.00 0.00 0.00 4.94
2303 4239 2.968156 GTGTGCGTGCGTGGGTTA 60.968 61.111 0.00 0.00 0.00 2.85
2304 4240 2.663520 TGTGCGTGCGTGGGTTAG 60.664 61.111 0.00 0.00 0.00 2.34
2305 4241 2.663852 GTGCGTGCGTGGGTTAGT 60.664 61.111 0.00 0.00 0.00 2.24
2306 4242 2.109387 TGCGTGCGTGGGTTAGTT 59.891 55.556 0.00 0.00 0.00 2.24
2307 4243 0.945265 GTGCGTGCGTGGGTTAGTTA 60.945 55.000 0.00 0.00 0.00 2.24
2308 4244 0.668096 TGCGTGCGTGGGTTAGTTAG 60.668 55.000 0.00 0.00 0.00 2.34
2309 4245 1.963190 GCGTGCGTGGGTTAGTTAGC 61.963 60.000 0.00 0.00 0.00 3.09
2310 4246 1.680105 CGTGCGTGGGTTAGTTAGCG 61.680 60.000 0.00 0.00 0.00 4.26
2311 4247 0.388907 GTGCGTGGGTTAGTTAGCGA 60.389 55.000 0.00 0.00 0.00 4.93
2312 4248 0.108992 TGCGTGGGTTAGTTAGCGAG 60.109 55.000 0.00 0.00 0.00 5.03
2313 4249 0.804933 GCGTGGGTTAGTTAGCGAGG 60.805 60.000 0.00 0.00 0.00 4.63
2314 4250 0.179119 CGTGGGTTAGTTAGCGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
2315 4251 0.900421 GTGGGTTAGTTAGCGAGGGT 59.100 55.000 0.00 0.00 0.00 4.34
2316 4252 1.277273 GTGGGTTAGTTAGCGAGGGTT 59.723 52.381 0.00 0.00 0.00 4.11
2317 4253 1.551883 TGGGTTAGTTAGCGAGGGTTC 59.448 52.381 0.00 0.00 0.00 3.62
2318 4254 1.551883 GGGTTAGTTAGCGAGGGTTCA 59.448 52.381 0.00 0.00 0.00 3.18
2319 4255 2.418334 GGGTTAGTTAGCGAGGGTTCAG 60.418 54.545 0.00 0.00 0.00 3.02
2320 4256 2.418334 GGTTAGTTAGCGAGGGTTCAGG 60.418 54.545 0.00 0.00 0.00 3.86
2321 4257 1.481871 TAGTTAGCGAGGGTTCAGGG 58.518 55.000 0.00 0.00 0.00 4.45
2322 4258 1.221021 GTTAGCGAGGGTTCAGGGG 59.779 63.158 0.00 0.00 0.00 4.79
2323 4259 1.229400 TTAGCGAGGGTTCAGGGGT 60.229 57.895 0.00 0.00 0.00 4.95
2324 4260 1.550130 TTAGCGAGGGTTCAGGGGTG 61.550 60.000 0.00 0.00 0.00 4.61
2325 4261 2.741878 TAGCGAGGGTTCAGGGGTGT 62.742 60.000 0.00 0.00 0.00 4.16
2326 4262 2.288025 GCGAGGGTTCAGGGGTGTA 61.288 63.158 0.00 0.00 0.00 2.90
2327 4263 1.898154 CGAGGGTTCAGGGGTGTAG 59.102 63.158 0.00 0.00 0.00 2.74
2328 4264 0.613853 CGAGGGTTCAGGGGTGTAGA 60.614 60.000 0.00 0.00 0.00 2.59
2329 4265 0.903236 GAGGGTTCAGGGGTGTAGAC 59.097 60.000 0.00 0.00 0.00 2.59
2330 4266 0.546988 AGGGTTCAGGGGTGTAGACC 60.547 60.000 0.00 0.00 42.27 3.85
2331 4267 1.595357 GGTTCAGGGGTGTAGACCG 59.405 63.158 2.45 0.00 44.23 4.79
2336 4272 4.487412 GGGGTGTAGACCGCGTCG 62.487 72.222 10.49 0.00 44.61 5.12
2374 4310 4.794439 TGATCGTGGGTGCGCGAG 62.794 66.667 12.10 0.00 40.56 5.03
2403 4339 2.987547 GGGACGTGACGAGTGGGA 60.988 66.667 13.70 0.00 0.00 4.37
2404 4340 2.567049 GGACGTGACGAGTGGGAG 59.433 66.667 13.70 0.00 0.00 4.30
2405 4341 2.567049 GACGTGACGAGTGGGAGG 59.433 66.667 13.70 0.00 0.00 4.30
2406 4342 2.203451 ACGTGACGAGTGGGAGGT 60.203 61.111 13.70 0.00 0.00 3.85
2407 4343 2.258591 CGTGACGAGTGGGAGGTG 59.741 66.667 0.00 0.00 0.00 4.00
2408 4344 2.657237 GTGACGAGTGGGAGGTGG 59.343 66.667 0.00 0.00 0.00 4.61
2409 4345 2.603473 TGACGAGTGGGAGGTGGG 60.603 66.667 0.00 0.00 0.00 4.61
2410 4346 2.603776 GACGAGTGGGAGGTGGGT 60.604 66.667 0.00 0.00 0.00 4.51
2411 4347 2.923035 ACGAGTGGGAGGTGGGTG 60.923 66.667 0.00 0.00 0.00 4.61
2412 4348 4.394712 CGAGTGGGAGGTGGGTGC 62.395 72.222 0.00 0.00 0.00 5.01
2413 4349 4.394712 GAGTGGGAGGTGGGTGCG 62.395 72.222 0.00 0.00 0.00 5.34
2415 4351 4.699522 GTGGGAGGTGGGTGCGTC 62.700 72.222 0.00 0.00 0.00 5.19
2417 4353 4.394712 GGGAGGTGGGTGCGTCAG 62.395 72.222 0.00 0.00 0.00 3.51
2418 4354 3.311110 GGAGGTGGGTGCGTCAGA 61.311 66.667 0.00 0.00 0.00 3.27
2419 4355 2.262915 GAGGTGGGTGCGTCAGAG 59.737 66.667 0.00 0.00 0.00 3.35
2420 4356 3.941657 GAGGTGGGTGCGTCAGAGC 62.942 68.421 0.00 0.00 37.71 4.09
2422 4358 4.357947 GTGGGTGCGTCAGAGCGA 62.358 66.667 0.00 0.00 40.67 4.93
2423 4359 4.056125 TGGGTGCGTCAGAGCGAG 62.056 66.667 0.00 0.00 40.67 5.03
2424 4360 3.749064 GGGTGCGTCAGAGCGAGA 61.749 66.667 0.00 0.00 40.67 4.04
2425 4361 2.505118 GGTGCGTCAGAGCGAGAC 60.505 66.667 0.00 0.00 40.67 3.36
2426 4362 2.505118 GTGCGTCAGAGCGAGACC 60.505 66.667 0.00 0.00 40.67 3.85
2427 4363 3.749064 TGCGTCAGAGCGAGACCC 61.749 66.667 0.00 0.00 40.67 4.46
2428 4364 4.838486 GCGTCAGAGCGAGACCCG 62.838 72.222 0.00 0.00 42.21 5.28
2429 4365 4.180946 CGTCAGAGCGAGACCCGG 62.181 72.222 0.00 0.00 39.04 5.73
2430 4366 4.500116 GTCAGAGCGAGACCCGGC 62.500 72.222 0.00 0.00 39.04 6.13
2436 4372 4.424566 GCGAGACCCGGCGTGTTA 62.425 66.667 6.01 0.00 39.04 2.41
2437 4373 2.202570 CGAGACCCGGCGTGTTAG 60.203 66.667 6.01 0.00 33.91 2.34
2438 4374 2.693762 CGAGACCCGGCGTGTTAGA 61.694 63.158 6.01 0.00 33.91 2.10
2439 4375 1.139095 GAGACCCGGCGTGTTAGAG 59.861 63.158 6.01 0.00 0.00 2.43
2440 4376 2.508663 GACCCGGCGTGTTAGAGC 60.509 66.667 6.01 0.00 0.00 4.09
2441 4377 3.291101 GACCCGGCGTGTTAGAGCA 62.291 63.158 6.01 0.00 34.54 4.26
2442 4378 2.813908 CCCGGCGTGTTAGAGCAC 60.814 66.667 6.01 0.00 36.12 4.40
2448 4384 2.048503 GTGTTAGAGCACGCGGGT 60.049 61.111 11.45 4.29 0.00 5.28
2449 4385 1.213537 GTGTTAGAGCACGCGGGTA 59.786 57.895 11.45 0.00 0.00 3.69
2450 4386 0.179119 GTGTTAGAGCACGCGGGTAT 60.179 55.000 11.45 4.59 0.00 2.73
2451 4387 1.066002 GTGTTAGAGCACGCGGGTATA 59.934 52.381 11.45 3.50 0.00 1.47
2452 4388 1.750206 TGTTAGAGCACGCGGGTATAA 59.250 47.619 11.45 9.82 0.00 0.98
2453 4389 2.223641 TGTTAGAGCACGCGGGTATAAG 60.224 50.000 11.45 0.00 31.93 1.73
2454 4390 1.971481 TAGAGCACGCGGGTATAAGA 58.029 50.000 11.45 0.00 0.00 2.10
2455 4391 0.384669 AGAGCACGCGGGTATAAGAC 59.615 55.000 11.45 0.00 0.00 3.01
2466 4402 2.327373 GGTATAAGACCCTCTCCACCC 58.673 57.143 0.00 0.00 43.25 4.61
2467 4403 2.090663 GGTATAAGACCCTCTCCACCCT 60.091 54.545 0.00 0.00 43.25 4.34
2468 4404 2.182516 ATAAGACCCTCTCCACCCTG 57.817 55.000 0.00 0.00 0.00 4.45
2469 4405 0.790993 TAAGACCCTCTCCACCCTGT 59.209 55.000 0.00 0.00 0.00 4.00
2470 4406 0.838122 AAGACCCTCTCCACCCTGTG 60.838 60.000 0.00 0.00 0.00 3.66
2471 4407 1.536662 GACCCTCTCCACCCTGTGT 60.537 63.158 0.00 0.00 0.00 3.72
2472 4408 0.252103 GACCCTCTCCACCCTGTGTA 60.252 60.000 0.00 0.00 0.00 2.90
2473 4409 0.544595 ACCCTCTCCACCCTGTGTAC 60.545 60.000 0.00 0.00 0.00 2.90
2474 4410 0.252284 CCCTCTCCACCCTGTGTACT 60.252 60.000 0.00 0.00 0.00 2.73
2475 4411 1.645710 CCTCTCCACCCTGTGTACTT 58.354 55.000 0.00 0.00 0.00 2.24
2476 4412 1.276421 CCTCTCCACCCTGTGTACTTG 59.724 57.143 0.00 0.00 0.00 3.16
2477 4413 1.971357 CTCTCCACCCTGTGTACTTGT 59.029 52.381 0.00 0.00 0.00 3.16
2478 4414 2.368875 CTCTCCACCCTGTGTACTTGTT 59.631 50.000 0.00 0.00 0.00 2.83
2479 4415 2.104111 TCTCCACCCTGTGTACTTGTTG 59.896 50.000 0.00 0.00 0.00 3.33
2480 4416 0.951558 CCACCCTGTGTACTTGTTGC 59.048 55.000 0.00 0.00 0.00 4.17
2481 4417 0.951558 CACCCTGTGTACTTGTTGCC 59.048 55.000 0.00 0.00 0.00 4.52
2482 4418 0.179001 ACCCTGTGTACTTGTTGCCC 60.179 55.000 0.00 0.00 0.00 5.36
2483 4419 1.234615 CCCTGTGTACTTGTTGCCCG 61.235 60.000 0.00 0.00 0.00 6.13
2484 4420 0.250124 CCTGTGTACTTGTTGCCCGA 60.250 55.000 0.00 0.00 0.00 5.14
2485 4421 1.610624 CCTGTGTACTTGTTGCCCGAT 60.611 52.381 0.00 0.00 0.00 4.18
2486 4422 1.732259 CTGTGTACTTGTTGCCCGATC 59.268 52.381 0.00 0.00 0.00 3.69
2487 4423 0.719465 GTGTACTTGTTGCCCGATCG 59.281 55.000 8.51 8.51 0.00 3.69
2488 4424 0.390603 TGTACTTGTTGCCCGATCGG 60.391 55.000 27.65 27.65 0.00 4.18
2498 4434 2.025727 CCGATCGGGTACGTGCTC 59.974 66.667 26.95 0.00 41.85 4.26
2499 4435 2.352001 CGATCGGGTACGTGCTCG 60.352 66.667 20.57 20.57 41.85 5.03
2500 4436 2.816360 CGATCGGGTACGTGCTCGA 61.816 63.158 30.22 30.22 45.99 4.04
2501 4437 1.009900 GATCGGGTACGTGCTCGAG 60.010 63.158 31.15 8.45 45.09 4.04
2502 4438 2.389866 GATCGGGTACGTGCTCGAGG 62.390 65.000 31.15 2.52 45.09 4.63
2503 4439 3.437795 CGGGTACGTGCTCGAGGT 61.438 66.667 22.10 6.30 40.62 3.85
2504 4440 2.181021 GGGTACGTGCTCGAGGTG 59.819 66.667 15.58 0.00 40.62 4.00
2505 4441 2.338015 GGGTACGTGCTCGAGGTGA 61.338 63.158 15.58 0.00 40.62 4.02
2506 4442 1.582968 GGTACGTGCTCGAGGTGAA 59.417 57.895 15.58 0.00 40.62 3.18
2507 4443 0.038892 GGTACGTGCTCGAGGTGAAA 60.039 55.000 15.58 0.00 40.62 2.69
2508 4444 1.603678 GGTACGTGCTCGAGGTGAAAA 60.604 52.381 15.58 0.00 40.62 2.29
2509 4445 1.719780 GTACGTGCTCGAGGTGAAAAG 59.280 52.381 15.58 0.00 40.62 2.27
2510 4446 0.387929 ACGTGCTCGAGGTGAAAAGA 59.612 50.000 15.58 0.00 40.62 2.52
2511 4447 1.202486 ACGTGCTCGAGGTGAAAAGAA 60.202 47.619 15.58 0.00 40.62 2.52
2512 4448 1.192534 CGTGCTCGAGGTGAAAAGAAC 59.807 52.381 15.58 0.00 39.71 3.01
2513 4449 2.210116 GTGCTCGAGGTGAAAAGAACA 58.790 47.619 15.58 0.00 0.00 3.18
2514 4450 2.221981 GTGCTCGAGGTGAAAAGAACAG 59.778 50.000 15.58 0.00 0.00 3.16
2515 4451 2.102420 TGCTCGAGGTGAAAAGAACAGA 59.898 45.455 15.58 0.00 0.00 3.41
2516 4452 3.131396 GCTCGAGGTGAAAAGAACAGAA 58.869 45.455 15.58 0.00 0.00 3.02
2517 4453 3.560068 GCTCGAGGTGAAAAGAACAGAAA 59.440 43.478 15.58 0.00 0.00 2.52
2518 4454 4.035208 GCTCGAGGTGAAAAGAACAGAAAA 59.965 41.667 15.58 0.00 0.00 2.29
2519 4455 5.734855 TCGAGGTGAAAAGAACAGAAAAG 57.265 39.130 0.00 0.00 0.00 2.27
2520 4456 5.183228 TCGAGGTGAAAAGAACAGAAAAGT 58.817 37.500 0.00 0.00 0.00 2.66
2521 4457 5.064707 TCGAGGTGAAAAGAACAGAAAAGTG 59.935 40.000 0.00 0.00 0.00 3.16
2522 4458 4.998788 AGGTGAAAAGAACAGAAAAGTGC 58.001 39.130 0.00 0.00 0.00 4.40
2523 4459 4.112634 GGTGAAAAGAACAGAAAAGTGCC 58.887 43.478 0.00 0.00 0.00 5.01
2524 4460 3.791353 GTGAAAAGAACAGAAAAGTGCCG 59.209 43.478 0.00 0.00 0.00 5.69
2525 4461 3.442273 TGAAAAGAACAGAAAAGTGCCGT 59.558 39.130 0.00 0.00 0.00 5.68
2526 4462 3.692791 AAAGAACAGAAAAGTGCCGTC 57.307 42.857 0.00 0.00 0.00 4.79
2527 4463 1.594331 AGAACAGAAAAGTGCCGTCC 58.406 50.000 0.00 0.00 0.00 4.79
2528 4464 0.234884 GAACAGAAAAGTGCCGTCCG 59.765 55.000 0.00 0.00 0.00 4.79
2529 4465 0.463116 AACAGAAAAGTGCCGTCCGT 60.463 50.000 0.00 0.00 0.00 4.69
2530 4466 1.157870 ACAGAAAAGTGCCGTCCGTG 61.158 55.000 0.00 0.00 0.00 4.94
2531 4467 2.251371 GAAAAGTGCCGTCCGTGC 59.749 61.111 0.00 0.00 0.00 5.34
2532 4468 3.573489 GAAAAGTGCCGTCCGTGCG 62.573 63.158 0.00 0.00 0.00 5.34
2544 4480 4.326766 CGTGCGGCAGGGTGTTTG 62.327 66.667 14.53 0.00 0.00 2.93
2545 4481 2.904866 GTGCGGCAGGGTGTTTGA 60.905 61.111 1.18 0.00 0.00 2.69
2546 4482 2.594303 TGCGGCAGGGTGTTTGAG 60.594 61.111 0.00 0.00 0.00 3.02
2547 4483 4.043200 GCGGCAGGGTGTTTGAGC 62.043 66.667 0.00 0.00 0.00 4.26
2548 4484 3.726517 CGGCAGGGTGTTTGAGCG 61.727 66.667 0.00 0.00 0.00 5.03
2549 4485 4.043200 GGCAGGGTGTTTGAGCGC 62.043 66.667 0.00 0.00 0.00 5.92
2550 4486 4.043200 GCAGGGTGTTTGAGCGCC 62.043 66.667 2.29 0.00 38.26 6.53
2555 4491 2.975799 GTGTTTGAGCGCCCGGAA 60.976 61.111 0.73 0.00 0.00 4.30
2556 4492 2.203224 TGTTTGAGCGCCCGGAAA 60.203 55.556 0.73 0.00 0.00 3.13
2557 4493 1.602323 TGTTTGAGCGCCCGGAAAT 60.602 52.632 0.73 0.00 0.00 2.17
2558 4494 1.136774 GTTTGAGCGCCCGGAAATC 59.863 57.895 0.73 0.00 0.00 2.17
2559 4495 2.043980 TTTGAGCGCCCGGAAATCC 61.044 57.895 0.73 0.00 0.00 3.01
2560 4496 2.478335 TTTGAGCGCCCGGAAATCCT 62.478 55.000 0.73 0.00 0.00 3.24
2561 4497 2.589159 GAGCGCCCGGAAATCCTC 60.589 66.667 0.73 0.00 0.00 3.71
2562 4498 3.083997 AGCGCCCGGAAATCCTCT 61.084 61.111 0.73 0.00 0.00 3.69
2563 4499 2.897350 GCGCCCGGAAATCCTCTG 60.897 66.667 0.73 0.00 0.00 3.35
2564 4500 2.584608 CGCCCGGAAATCCTCTGT 59.415 61.111 0.73 0.00 0.00 3.41
2565 4501 1.815421 CGCCCGGAAATCCTCTGTG 60.815 63.158 0.73 0.00 0.00 3.66
2566 4502 1.299976 GCCCGGAAATCCTCTGTGT 59.700 57.895 0.73 0.00 0.00 3.72
2567 4503 0.322546 GCCCGGAAATCCTCTGTGTT 60.323 55.000 0.73 0.00 0.00 3.32
2568 4504 1.739067 CCCGGAAATCCTCTGTGTTC 58.261 55.000 0.73 0.00 0.00 3.18
2569 4505 1.279271 CCCGGAAATCCTCTGTGTTCT 59.721 52.381 0.73 0.00 0.00 3.01
2570 4506 2.290323 CCCGGAAATCCTCTGTGTTCTT 60.290 50.000 0.73 0.00 0.00 2.52
2571 4507 3.412386 CCGGAAATCCTCTGTGTTCTTT 58.588 45.455 0.00 0.00 0.00 2.52
2572 4508 3.821033 CCGGAAATCCTCTGTGTTCTTTT 59.179 43.478 0.00 0.00 0.00 2.27
2573 4509 4.278419 CCGGAAATCCTCTGTGTTCTTTTT 59.722 41.667 0.00 0.00 0.00 1.94
2574 4510 5.452777 CGGAAATCCTCTGTGTTCTTTTTC 58.547 41.667 0.00 0.00 0.00 2.29
2575 4511 5.562890 CGGAAATCCTCTGTGTTCTTTTTCC 60.563 44.000 0.00 0.00 38.19 3.13
2576 4512 5.279006 GGAAATCCTCTGTGTTCTTTTTCCC 60.279 44.000 0.00 0.00 36.47 3.97
2577 4513 3.223674 TCCTCTGTGTTCTTTTTCCCC 57.776 47.619 0.00 0.00 0.00 4.81
2578 4514 2.783510 TCCTCTGTGTTCTTTTTCCCCT 59.216 45.455 0.00 0.00 0.00 4.79
2579 4515 3.149981 CCTCTGTGTTCTTTTTCCCCTC 58.850 50.000 0.00 0.00 0.00 4.30
2580 4516 3.149981 CTCTGTGTTCTTTTTCCCCTCC 58.850 50.000 0.00 0.00 0.00 4.30
2581 4517 1.880027 CTGTGTTCTTTTTCCCCTCCG 59.120 52.381 0.00 0.00 0.00 4.63
2582 4518 1.491332 TGTGTTCTTTTTCCCCTCCGA 59.509 47.619 0.00 0.00 0.00 4.55
2583 4519 1.878088 GTGTTCTTTTTCCCCTCCGAC 59.122 52.381 0.00 0.00 0.00 4.79
2584 4520 1.202842 TGTTCTTTTTCCCCTCCGACC 60.203 52.381 0.00 0.00 0.00 4.79
2585 4521 0.035739 TTCTTTTTCCCCTCCGACCG 59.964 55.000 0.00 0.00 0.00 4.79
2586 4522 1.123246 TCTTTTTCCCCTCCGACCGT 61.123 55.000 0.00 0.00 0.00 4.83
2587 4523 0.953960 CTTTTTCCCCTCCGACCGTG 60.954 60.000 0.00 0.00 0.00 4.94
2588 4524 1.698067 TTTTTCCCCTCCGACCGTGT 61.698 55.000 0.00 0.00 0.00 4.49
2589 4525 2.103339 TTTTCCCCTCCGACCGTGTC 62.103 60.000 0.00 0.00 0.00 3.67
2590 4526 3.518552 TTCCCCTCCGACCGTGTCT 62.519 63.158 3.15 0.00 0.00 3.41
2591 4527 3.450115 CCCCTCCGACCGTGTCTC 61.450 72.222 3.15 0.00 0.00 3.36
2592 4528 3.450115 CCCTCCGACCGTGTCTCC 61.450 72.222 3.15 0.00 0.00 3.71
2593 4529 3.812019 CCTCCGACCGTGTCTCCG 61.812 72.222 3.15 0.00 0.00 4.63
2600 4536 3.284336 CCGTGTCTCCGGTGATCA 58.716 61.111 9.83 7.05 43.07 2.92
2601 4537 1.153823 CCGTGTCTCCGGTGATCAC 60.154 63.158 17.91 17.91 43.07 3.06
2610 4546 4.478195 GGTGATCACCGTCGAGTG 57.522 61.111 28.52 0.30 42.29 3.51
2611 4547 1.805945 GGTGATCACCGTCGAGTGC 60.806 63.158 28.52 3.16 42.29 4.40
2612 4548 1.213013 GTGATCACCGTCGAGTGCT 59.787 57.895 15.31 0.66 37.68 4.40
2613 4549 0.450583 GTGATCACCGTCGAGTGCTA 59.549 55.000 15.31 0.00 37.68 3.49
2614 4550 0.733150 TGATCACCGTCGAGTGCTAG 59.267 55.000 8.46 0.00 37.68 3.42
2615 4551 0.029567 GATCACCGTCGAGTGCTAGG 59.970 60.000 8.46 0.00 37.68 3.02
2616 4552 0.680280 ATCACCGTCGAGTGCTAGGT 60.680 55.000 8.46 0.00 37.68 3.08
2617 4553 1.136984 CACCGTCGAGTGCTAGGTC 59.863 63.158 0.00 0.00 32.04 3.85
2618 4554 1.303074 ACCGTCGAGTGCTAGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
2619 4555 1.306642 ACCGTCGAGTGCTAGGTCAG 61.307 60.000 0.00 0.00 0.00 3.51
2620 4556 1.429825 CGTCGAGTGCTAGGTCAGG 59.570 63.158 0.00 0.00 0.00 3.86
2621 4557 1.139947 GTCGAGTGCTAGGTCAGGC 59.860 63.158 0.00 0.00 0.00 4.85
2622 4558 1.000771 TCGAGTGCTAGGTCAGGCT 60.001 57.895 0.00 0.00 0.00 4.58
2623 4559 1.140589 CGAGTGCTAGGTCAGGCTG 59.859 63.158 8.58 8.58 0.00 4.85
2624 4560 1.153469 GAGTGCTAGGTCAGGCTGC 60.153 63.158 10.34 4.94 0.00 5.25
2625 4561 2.510238 GTGCTAGGTCAGGCTGCG 60.510 66.667 10.34 0.00 0.00 5.18
2626 4562 4.457496 TGCTAGGTCAGGCTGCGC 62.457 66.667 10.34 0.00 0.00 6.09
2676 4612 3.904965 TCCCACCAAATATATCGCACCTA 59.095 43.478 0.00 0.00 0.00 3.08
2711 4647 0.695803 AAGATCGAGGGCCCAATCCT 60.696 55.000 27.56 10.74 37.33 3.24
2901 4842 1.219124 GGCGAGCTGGATCTGTCAA 59.781 57.895 0.00 0.00 0.00 3.18
3014 4955 1.901464 AAACCGCCTTGCCGAATGT 60.901 52.632 0.00 0.00 0.00 2.71
3059 5000 1.841663 CGAACAACAGCTTGACCGGG 61.842 60.000 6.32 0.00 0.00 5.73
3060 5001 1.515521 GAACAACAGCTTGACCGGGG 61.516 60.000 6.32 0.00 0.00 5.73
3061 5002 1.990160 AACAACAGCTTGACCGGGGA 61.990 55.000 6.32 0.00 0.00 4.81
3062 5003 1.672356 CAACAGCTTGACCGGGGAG 60.672 63.158 6.32 0.90 0.00 4.30
3063 5004 3.553095 AACAGCTTGACCGGGGAGC 62.553 63.158 15.59 15.59 36.68 4.70
3064 5005 4.785453 CAGCTTGACCGGGGAGCC 62.785 72.222 18.57 5.28 37.11 4.70
3067 5008 4.148825 CTTGACCGGGGAGCCGAG 62.149 72.222 6.32 0.00 34.88 4.63
3305 5281 1.056660 ACCTGGACGTCTCCAACAAT 58.943 50.000 16.46 0.00 46.63 2.71
3526 5503 0.108041 TCCCGGAAGTATTTGGTCGC 60.108 55.000 0.73 0.00 0.00 5.19
3532 5509 2.676342 GGAAGTATTTGGTCGCGATGTT 59.324 45.455 14.06 0.00 0.00 2.71
3686 5663 0.388907 TGAAGTACAAGTACCCGCGC 60.389 55.000 0.00 0.00 36.75 6.86
3720 5697 1.668294 CTGGTTGAGGCGACAGAGT 59.332 57.895 0.00 0.00 32.86 3.24
3752 5729 4.052229 CGGCTCGTCGGAACAGGT 62.052 66.667 0.00 0.00 0.00 4.00
3898 5875 2.350895 CCACCGGAACCTCATGCA 59.649 61.111 9.46 0.00 0.00 3.96
3955 5936 1.852157 TGGTCCTGCCCTTCATGGT 60.852 57.895 0.00 0.00 36.04 3.55
4138 6119 0.242825 ATCAACGACGACATGACCGT 59.757 50.000 15.34 15.34 43.56 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.010213 GGTAGCCCAAAAACAATGTCTAACA 59.990 40.000 0.00 0.00 0.00 2.41
52 53 5.243060 AGGTAGCCCAAAAACAATGTCTAAC 59.757 40.000 0.00 0.00 0.00 2.34
281 340 2.337583 TGCACGCACTATCTCTCAAAC 58.662 47.619 0.00 0.00 0.00 2.93
306 370 2.185103 GAGTAGCGGGGCGTCTATCG 62.185 65.000 0.00 0.00 43.12 2.92
320 384 2.948979 CCACCAGAGACTAGCAGAGTAG 59.051 54.545 0.00 0.00 39.06 2.57
321 385 2.576648 TCCACCAGAGACTAGCAGAGTA 59.423 50.000 0.00 0.00 39.06 2.59
322 386 1.356059 TCCACCAGAGACTAGCAGAGT 59.644 52.381 0.00 0.00 42.90 3.24
323 387 2.136298 TCCACCAGAGACTAGCAGAG 57.864 55.000 0.00 0.00 0.00 3.35
324 388 2.291865 ACATCCACCAGAGACTAGCAGA 60.292 50.000 0.00 0.00 0.00 4.26
325 389 2.106566 ACATCCACCAGAGACTAGCAG 58.893 52.381 0.00 0.00 0.00 4.24
326 390 2.238084 ACATCCACCAGAGACTAGCA 57.762 50.000 0.00 0.00 0.00 3.49
327 391 3.491792 GCTAACATCCACCAGAGACTAGC 60.492 52.174 0.00 0.00 0.00 3.42
328 392 3.068873 GGCTAACATCCACCAGAGACTAG 59.931 52.174 0.00 0.00 0.00 2.57
329 393 3.031736 GGCTAACATCCACCAGAGACTA 58.968 50.000 0.00 0.00 0.00 2.59
330 394 1.834263 GGCTAACATCCACCAGAGACT 59.166 52.381 0.00 0.00 0.00 3.24
331 395 1.834263 AGGCTAACATCCACCAGAGAC 59.166 52.381 0.00 0.00 0.00 3.36
332 396 1.833630 CAGGCTAACATCCACCAGAGA 59.166 52.381 0.00 0.00 0.00 3.10
333 397 1.833630 TCAGGCTAACATCCACCAGAG 59.166 52.381 0.00 0.00 0.00 3.35
334 398 1.951209 TCAGGCTAACATCCACCAGA 58.049 50.000 0.00 0.00 0.00 3.86
335 399 2.749621 GTTTCAGGCTAACATCCACCAG 59.250 50.000 0.00 0.00 0.00 4.00
336 400 2.554344 GGTTTCAGGCTAACATCCACCA 60.554 50.000 2.82 0.00 0.00 4.17
337 401 2.092323 GGTTTCAGGCTAACATCCACC 58.908 52.381 2.82 0.00 0.00 4.61
338 402 2.749621 CTGGTTTCAGGCTAACATCCAC 59.250 50.000 2.82 0.00 37.36 4.02
339 403 2.642311 TCTGGTTTCAGGCTAACATCCA 59.358 45.455 2.82 1.04 41.23 3.41
340 404 3.350219 TCTGGTTTCAGGCTAACATCC 57.650 47.619 2.82 0.00 41.23 3.51
341 405 7.283127 TCAATTATCTGGTTTCAGGCTAACATC 59.717 37.037 2.82 0.00 41.23 3.06
342 406 7.118723 TCAATTATCTGGTTTCAGGCTAACAT 58.881 34.615 2.82 0.00 41.23 2.71
343 407 6.480763 TCAATTATCTGGTTTCAGGCTAACA 58.519 36.000 2.82 0.00 41.23 2.41
344 408 6.823689 TCTCAATTATCTGGTTTCAGGCTAAC 59.176 38.462 0.00 0.00 41.23 2.34
345 409 6.957631 TCTCAATTATCTGGTTTCAGGCTAA 58.042 36.000 0.00 0.00 41.23 3.09
346 410 6.560003 TCTCAATTATCTGGTTTCAGGCTA 57.440 37.500 0.00 0.00 41.23 3.93
347 411 5.441718 TCTCAATTATCTGGTTTCAGGCT 57.558 39.130 0.00 0.00 41.23 4.58
348 412 5.824624 TCATCTCAATTATCTGGTTTCAGGC 59.175 40.000 0.00 0.00 41.23 4.85
349 413 6.261826 GGTCATCTCAATTATCTGGTTTCAGG 59.738 42.308 0.00 0.00 41.23 3.86
350 414 6.261826 GGGTCATCTCAATTATCTGGTTTCAG 59.738 42.308 0.00 0.00 42.21 3.02
351 415 6.122277 GGGTCATCTCAATTATCTGGTTTCA 58.878 40.000 0.00 0.00 0.00 2.69
352 416 6.038714 GTGGGTCATCTCAATTATCTGGTTTC 59.961 42.308 0.00 0.00 0.00 2.78
353 417 5.888161 GTGGGTCATCTCAATTATCTGGTTT 59.112 40.000 0.00 0.00 0.00 3.27
354 418 5.440610 GTGGGTCATCTCAATTATCTGGTT 58.559 41.667 0.00 0.00 0.00 3.67
355 419 4.443457 CGTGGGTCATCTCAATTATCTGGT 60.443 45.833 0.00 0.00 0.00 4.00
356 420 4.060900 CGTGGGTCATCTCAATTATCTGG 58.939 47.826 0.00 0.00 0.00 3.86
357 421 4.948847 TCGTGGGTCATCTCAATTATCTG 58.051 43.478 0.00 0.00 0.00 2.90
358 422 4.895889 TCTCGTGGGTCATCTCAATTATCT 59.104 41.667 0.00 0.00 0.00 1.98
359 423 5.201713 TCTCGTGGGTCATCTCAATTATC 57.798 43.478 0.00 0.00 0.00 1.75
360 424 5.565637 CGATCTCGTGGGTCATCTCAATTAT 60.566 44.000 0.00 0.00 34.11 1.28
361 425 4.261614 CGATCTCGTGGGTCATCTCAATTA 60.262 45.833 0.00 0.00 34.11 1.40
362 426 3.491619 CGATCTCGTGGGTCATCTCAATT 60.492 47.826 0.00 0.00 34.11 2.32
363 427 2.035193 CGATCTCGTGGGTCATCTCAAT 59.965 50.000 0.00 0.00 34.11 2.57
364 428 1.405463 CGATCTCGTGGGTCATCTCAA 59.595 52.381 0.00 0.00 34.11 3.02
365 429 1.025041 CGATCTCGTGGGTCATCTCA 58.975 55.000 0.00 0.00 34.11 3.27
366 430 3.855630 CGATCTCGTGGGTCATCTC 57.144 57.895 0.00 0.00 34.11 2.75
383 447 4.436998 GGGAGCTGGTCGTGGACG 62.437 72.222 0.00 0.00 41.45 4.79
384 448 2.997897 AGGGAGCTGGTCGTGGAC 60.998 66.667 0.00 0.00 0.00 4.02
385 449 2.997315 CAGGGAGCTGGTCGTGGA 60.997 66.667 0.00 0.00 0.00 4.02
386 450 4.767255 GCAGGGAGCTGGTCGTGG 62.767 72.222 0.00 0.00 41.15 4.94
395 459 1.562672 TTGTAGGGGAAGCAGGGAGC 61.563 60.000 0.00 0.00 46.19 4.70
396 460 0.253327 GTTGTAGGGGAAGCAGGGAG 59.747 60.000 0.00 0.00 0.00 4.30
397 461 1.205460 GGTTGTAGGGGAAGCAGGGA 61.205 60.000 0.00 0.00 0.00 4.20
398 462 1.208165 AGGTTGTAGGGGAAGCAGGG 61.208 60.000 0.00 0.00 0.00 4.45
399 463 0.253327 GAGGTTGTAGGGGAAGCAGG 59.747 60.000 0.00 0.00 0.00 4.85
400 464 0.253327 GGAGGTTGTAGGGGAAGCAG 59.747 60.000 0.00 0.00 0.00 4.24
401 465 1.550130 CGGAGGTTGTAGGGGAAGCA 61.550 60.000 0.00 0.00 0.00 3.91
402 466 1.221021 CGGAGGTTGTAGGGGAAGC 59.779 63.158 0.00 0.00 0.00 3.86
419 483 1.454479 TTCTACCGGGTCTAGGCCG 60.454 63.158 7.43 2.63 0.00 6.13
420 484 1.398174 GGTTCTACCGGGTCTAGGCC 61.398 65.000 4.21 4.21 0.00 5.19
421 485 1.398174 GGGTTCTACCGGGTCTAGGC 61.398 65.000 6.32 0.00 39.83 3.93
422 486 0.261109 AGGGTTCTACCGGGTCTAGG 59.739 60.000 6.32 0.00 39.83 3.02
423 487 2.861274 CTAGGGTTCTACCGGGTCTAG 58.139 57.143 6.32 3.35 39.83 2.43
424 488 1.133668 GCTAGGGTTCTACCGGGTCTA 60.134 57.143 6.32 0.00 39.83 2.59
425 489 0.396835 GCTAGGGTTCTACCGGGTCT 60.397 60.000 6.32 0.00 39.83 3.85
426 490 0.396835 AGCTAGGGTTCTACCGGGTC 60.397 60.000 6.32 0.00 39.83 4.46
427 491 0.396835 GAGCTAGGGTTCTACCGGGT 60.397 60.000 6.32 4.46 39.83 5.28
428 492 1.114119 GGAGCTAGGGTTCTACCGGG 61.114 65.000 6.32 0.00 39.83 5.73
429 493 0.106116 AGGAGCTAGGGTTCTACCGG 60.106 60.000 0.00 0.00 39.83 5.28
430 494 2.622470 GTTAGGAGCTAGGGTTCTACCG 59.378 54.545 0.00 0.00 39.83 4.02
431 495 3.384146 GTGTTAGGAGCTAGGGTTCTACC 59.616 52.174 0.00 0.00 37.60 3.18
432 496 3.384146 GGTGTTAGGAGCTAGGGTTCTAC 59.616 52.174 0.00 0.00 0.00 2.59
433 497 3.271490 AGGTGTTAGGAGCTAGGGTTCTA 59.729 47.826 0.00 0.00 0.00 2.10
434 498 2.044630 AGGTGTTAGGAGCTAGGGTTCT 59.955 50.000 0.00 0.00 0.00 3.01
435 499 2.468915 AGGTGTTAGGAGCTAGGGTTC 58.531 52.381 0.00 0.00 0.00 3.62
436 500 2.644060 AGGTGTTAGGAGCTAGGGTT 57.356 50.000 0.00 0.00 0.00 4.11
437 501 3.771071 TTAGGTGTTAGGAGCTAGGGT 57.229 47.619 0.00 0.00 0.00 4.34
438 502 3.773119 TGTTTAGGTGTTAGGAGCTAGGG 59.227 47.826 0.00 0.00 0.00 3.53
439 503 4.382793 GGTGTTTAGGTGTTAGGAGCTAGG 60.383 50.000 0.00 0.00 0.00 3.02
440 504 4.382793 GGGTGTTTAGGTGTTAGGAGCTAG 60.383 50.000 0.00 0.00 0.00 3.42
441 505 3.516700 GGGTGTTTAGGTGTTAGGAGCTA 59.483 47.826 0.00 0.00 0.00 3.32
442 506 2.305052 GGGTGTTTAGGTGTTAGGAGCT 59.695 50.000 0.00 0.00 0.00 4.09
443 507 2.305052 AGGGTGTTTAGGTGTTAGGAGC 59.695 50.000 0.00 0.00 0.00 4.70
444 508 3.581332 TCAGGGTGTTTAGGTGTTAGGAG 59.419 47.826 0.00 0.00 0.00 3.69
445 509 3.589641 TCAGGGTGTTTAGGTGTTAGGA 58.410 45.455 0.00 0.00 0.00 2.94
446 510 4.569719 ATCAGGGTGTTTAGGTGTTAGG 57.430 45.455 0.00 0.00 0.00 2.69
447 511 6.154706 AGAGTATCAGGGTGTTTAGGTGTTAG 59.845 42.308 0.00 0.00 37.82 2.34
448 512 6.021030 AGAGTATCAGGGTGTTTAGGTGTTA 58.979 40.000 0.00 0.00 37.82 2.41
449 513 4.844655 AGAGTATCAGGGTGTTTAGGTGTT 59.155 41.667 0.00 0.00 37.82 3.32
450 514 4.223032 CAGAGTATCAGGGTGTTTAGGTGT 59.777 45.833 0.00 0.00 37.82 4.16
451 515 4.759782 CAGAGTATCAGGGTGTTTAGGTG 58.240 47.826 0.00 0.00 37.82 4.00
452 516 3.197983 GCAGAGTATCAGGGTGTTTAGGT 59.802 47.826 0.00 0.00 37.82 3.08
453 517 3.452627 AGCAGAGTATCAGGGTGTTTAGG 59.547 47.826 0.00 0.00 37.82 2.69
454 518 4.744795 AGCAGAGTATCAGGGTGTTTAG 57.255 45.455 0.00 0.00 37.82 1.85
722 956 4.210120 GCATGATAAAGCTAGAGTGAACCG 59.790 45.833 0.00 0.00 0.00 4.44
808 1071 2.041206 GAGGATCCCCTTGCGTACCC 62.041 65.000 8.55 0.00 44.53 3.69
904 1253 1.961277 ACTTCAACTTCGGCAGCGG 60.961 57.895 0.00 0.00 0.00 5.52
1117 2362 3.181505 CGATGTACTAGAGATGGATCGGC 60.182 52.174 0.00 0.00 0.00 5.54
1142 2557 3.375922 GGTAGCATCTCTATAGGCTCGAC 59.624 52.174 4.71 0.33 37.79 4.20
1143 2558 3.611970 GGTAGCATCTCTATAGGCTCGA 58.388 50.000 4.71 0.00 37.79 4.04
1144 2559 2.353269 CGGTAGCATCTCTATAGGCTCG 59.647 54.545 4.71 1.29 37.79 5.03
1145 2560 2.098443 GCGGTAGCATCTCTATAGGCTC 59.902 54.545 4.71 0.00 44.35 4.70
1146 2561 2.096248 GCGGTAGCATCTCTATAGGCT 58.904 52.381 0.00 3.28 44.35 4.58
1147 2562 2.570442 GCGGTAGCATCTCTATAGGC 57.430 55.000 0.00 0.00 44.35 3.93
1548 2997 1.613630 ACGGGGCCAGAGATGTTCT 60.614 57.895 11.67 0.00 36.25 3.01
1648 3097 3.382832 CCGCGGAGGTTGGAGAGT 61.383 66.667 24.07 0.00 34.51 3.24
1737 3186 3.101643 TGAGGCTGAGGTAGTACATGT 57.898 47.619 2.69 2.69 0.00 3.21
1837 3286 4.098044 GGAATCTCGCCGGATAGATCATTA 59.902 45.833 16.65 0.00 31.20 1.90
1908 3357 0.766131 TGGGAGTTTTCCGGTTAGCA 59.234 50.000 0.00 0.00 45.04 3.49
2182 4118 2.709475 CTCGCCGTGGCTTATTGC 59.291 61.111 9.55 0.00 39.32 3.56
2183 4119 1.766143 GAGCTCGCCGTGGCTTATTG 61.766 60.000 9.55 0.00 39.05 1.90
2184 4120 1.521681 GAGCTCGCCGTGGCTTATT 60.522 57.895 9.55 0.00 39.05 1.40
2185 4121 2.107141 GAGCTCGCCGTGGCTTAT 59.893 61.111 9.55 0.00 39.05 1.73
2186 4122 4.492160 CGAGCTCGCCGTGGCTTA 62.492 66.667 25.07 0.00 39.05 3.09
2218 4154 3.636043 CGTCCACCGTGCACACAC 61.636 66.667 18.64 4.23 43.76 3.82
2263 4199 4.741781 GTCATGCACACACGCGCC 62.742 66.667 5.73 0.00 33.35 6.53
2264 4200 4.741781 GGTCATGCACACACGCGC 62.742 66.667 5.73 0.00 33.35 6.86
2265 4201 4.428922 CGGTCATGCACACACGCG 62.429 66.667 3.53 3.53 33.35 6.01
2266 4202 3.015293 CTCGGTCATGCACACACGC 62.015 63.158 0.00 0.00 0.00 5.34
2267 4203 1.664649 ACTCGGTCATGCACACACG 60.665 57.895 0.00 0.00 0.00 4.49
2268 4204 0.880278 ACACTCGGTCATGCACACAC 60.880 55.000 0.00 0.00 0.00 3.82
2269 4205 0.879839 CACACTCGGTCATGCACACA 60.880 55.000 0.00 0.00 0.00 3.72
2270 4206 0.880278 ACACACTCGGTCATGCACAC 60.880 55.000 0.00 0.00 0.00 3.82
2271 4207 0.879839 CACACACTCGGTCATGCACA 60.880 55.000 0.00 0.00 0.00 4.57
2272 4208 1.862123 CACACACTCGGTCATGCAC 59.138 57.895 0.00 0.00 0.00 4.57
2273 4209 1.960763 GCACACACTCGGTCATGCA 60.961 57.895 0.00 0.00 38.15 3.96
2274 4210 2.863153 GCACACACTCGGTCATGC 59.137 61.111 0.00 0.00 33.01 4.06
2275 4211 1.664649 ACGCACACACTCGGTCATG 60.665 57.895 0.00 0.00 0.00 3.07
2276 4212 1.664649 CACGCACACACTCGGTCAT 60.665 57.895 0.00 0.00 0.00 3.06
2277 4213 2.279186 CACGCACACACTCGGTCA 60.279 61.111 0.00 0.00 0.00 4.02
2278 4214 3.702555 GCACGCACACACTCGGTC 61.703 66.667 0.00 0.00 0.00 4.79
2281 4217 4.339809 CACGCACGCACACACTCG 62.340 66.667 0.00 0.00 0.00 4.18
2282 4218 4.000557 CCACGCACGCACACACTC 62.001 66.667 0.00 0.00 0.00 3.51
2285 4221 3.735037 TAACCCACGCACGCACACA 62.735 57.895 0.00 0.00 0.00 3.72
2286 4222 2.950172 CTAACCCACGCACGCACAC 61.950 63.158 0.00 0.00 0.00 3.82
2287 4223 2.663520 CTAACCCACGCACGCACA 60.664 61.111 0.00 0.00 0.00 4.57
2288 4224 0.945265 TAACTAACCCACGCACGCAC 60.945 55.000 0.00 0.00 0.00 5.34
2289 4225 0.668096 CTAACTAACCCACGCACGCA 60.668 55.000 0.00 0.00 0.00 5.24
2290 4226 1.963190 GCTAACTAACCCACGCACGC 61.963 60.000 0.00 0.00 0.00 5.34
2291 4227 1.680105 CGCTAACTAACCCACGCACG 61.680 60.000 0.00 0.00 0.00 5.34
2292 4228 0.388907 TCGCTAACTAACCCACGCAC 60.389 55.000 0.00 0.00 0.00 5.34
2293 4229 0.108992 CTCGCTAACTAACCCACGCA 60.109 55.000 0.00 0.00 0.00 5.24
2294 4230 0.804933 CCTCGCTAACTAACCCACGC 60.805 60.000 0.00 0.00 0.00 5.34
2295 4231 0.179119 CCCTCGCTAACTAACCCACG 60.179 60.000 0.00 0.00 0.00 4.94
2296 4232 0.900421 ACCCTCGCTAACTAACCCAC 59.100 55.000 0.00 0.00 0.00 4.61
2297 4233 1.551883 GAACCCTCGCTAACTAACCCA 59.448 52.381 0.00 0.00 0.00 4.51
2298 4234 1.551883 TGAACCCTCGCTAACTAACCC 59.448 52.381 0.00 0.00 0.00 4.11
2299 4235 2.418334 CCTGAACCCTCGCTAACTAACC 60.418 54.545 0.00 0.00 0.00 2.85
2300 4236 2.418334 CCCTGAACCCTCGCTAACTAAC 60.418 54.545 0.00 0.00 0.00 2.34
2301 4237 1.829222 CCCTGAACCCTCGCTAACTAA 59.171 52.381 0.00 0.00 0.00 2.24
2302 4238 1.481871 CCCTGAACCCTCGCTAACTA 58.518 55.000 0.00 0.00 0.00 2.24
2303 4239 1.265454 CCCCTGAACCCTCGCTAACT 61.265 60.000 0.00 0.00 0.00 2.24
2304 4240 1.221021 CCCCTGAACCCTCGCTAAC 59.779 63.158 0.00 0.00 0.00 2.34
2305 4241 1.229400 ACCCCTGAACCCTCGCTAA 60.229 57.895 0.00 0.00 0.00 3.09
2306 4242 1.987855 CACCCCTGAACCCTCGCTA 60.988 63.158 0.00 0.00 0.00 4.26
2307 4243 2.741878 TACACCCCTGAACCCTCGCT 62.742 60.000 0.00 0.00 0.00 4.93
2308 4244 2.240162 CTACACCCCTGAACCCTCGC 62.240 65.000 0.00 0.00 0.00 5.03
2309 4245 0.613853 TCTACACCCCTGAACCCTCG 60.614 60.000 0.00 0.00 0.00 4.63
2310 4246 0.903236 GTCTACACCCCTGAACCCTC 59.097 60.000 0.00 0.00 0.00 4.30
2311 4247 0.546988 GGTCTACACCCCTGAACCCT 60.547 60.000 0.00 0.00 36.54 4.34
2312 4248 1.896122 CGGTCTACACCCCTGAACCC 61.896 65.000 0.00 0.00 40.01 4.11
2313 4249 1.595357 CGGTCTACACCCCTGAACC 59.405 63.158 0.00 0.00 40.01 3.62
2314 4250 1.079336 GCGGTCTACACCCCTGAAC 60.079 63.158 0.00 0.00 40.01 3.18
2315 4251 2.642254 CGCGGTCTACACCCCTGAA 61.642 63.158 0.00 0.00 40.01 3.02
2316 4252 3.066190 CGCGGTCTACACCCCTGA 61.066 66.667 0.00 0.00 40.01 3.86
2317 4253 3.352338 GACGCGGTCTACACCCCTG 62.352 68.421 12.47 0.00 40.01 4.45
2318 4254 3.066814 GACGCGGTCTACACCCCT 61.067 66.667 12.47 0.00 40.01 4.79
2319 4255 4.487412 CGACGCGGTCTACACCCC 62.487 72.222 12.47 0.00 40.01 4.95
2320 4256 4.487412 CCGACGCGGTCTACACCC 62.487 72.222 12.47 0.00 42.73 4.61
2321 4257 4.487412 CCCGACGCGGTCTACACC 62.487 72.222 12.47 0.00 46.80 4.16
2357 4293 4.794439 CTCGCGCACCCACGATCA 62.794 66.667 8.75 0.00 37.72 2.92
2385 4321 4.415332 CCCACTCGTCACGTCCCG 62.415 72.222 0.00 0.00 0.00 5.14
2386 4322 2.987547 TCCCACTCGTCACGTCCC 60.988 66.667 0.00 0.00 0.00 4.46
2387 4323 2.567049 CTCCCACTCGTCACGTCC 59.433 66.667 0.00 0.00 0.00 4.79
2388 4324 2.266627 ACCTCCCACTCGTCACGTC 61.267 63.158 0.00 0.00 0.00 4.34
2389 4325 2.203451 ACCTCCCACTCGTCACGT 60.203 61.111 0.00 0.00 0.00 4.49
2390 4326 2.258591 CACCTCCCACTCGTCACG 59.741 66.667 0.00 0.00 0.00 4.35
2391 4327 2.657237 CCACCTCCCACTCGTCAC 59.343 66.667 0.00 0.00 0.00 3.67
2392 4328 2.603473 CCCACCTCCCACTCGTCA 60.603 66.667 0.00 0.00 0.00 4.35
2393 4329 2.603776 ACCCACCTCCCACTCGTC 60.604 66.667 0.00 0.00 0.00 4.20
2394 4330 2.923035 CACCCACCTCCCACTCGT 60.923 66.667 0.00 0.00 0.00 4.18
2395 4331 4.394712 GCACCCACCTCCCACTCG 62.395 72.222 0.00 0.00 0.00 4.18
2396 4332 4.394712 CGCACCCACCTCCCACTC 62.395 72.222 0.00 0.00 0.00 3.51
2398 4334 4.699522 GACGCACCCACCTCCCAC 62.700 72.222 0.00 0.00 0.00 4.61
2400 4336 4.394712 CTGACGCACCCACCTCCC 62.395 72.222 0.00 0.00 0.00 4.30
2401 4337 3.302347 CTCTGACGCACCCACCTCC 62.302 68.421 0.00 0.00 0.00 4.30
2402 4338 2.262915 CTCTGACGCACCCACCTC 59.737 66.667 0.00 0.00 0.00 3.85
2403 4339 4.008933 GCTCTGACGCACCCACCT 62.009 66.667 0.00 0.00 0.00 4.00
2405 4341 4.357947 TCGCTCTGACGCACCCAC 62.358 66.667 0.00 0.00 0.00 4.61
2406 4342 4.056125 CTCGCTCTGACGCACCCA 62.056 66.667 0.00 0.00 0.00 4.51
2407 4343 3.749064 TCTCGCTCTGACGCACCC 61.749 66.667 0.00 0.00 0.00 4.61
2408 4344 2.505118 GTCTCGCTCTGACGCACC 60.505 66.667 0.00 0.00 0.00 5.01
2409 4345 2.505118 GGTCTCGCTCTGACGCAC 60.505 66.667 0.00 0.00 35.45 5.34
2410 4346 3.749064 GGGTCTCGCTCTGACGCA 61.749 66.667 10.91 0.00 43.77 5.24
2411 4347 4.838486 CGGGTCTCGCTCTGACGC 62.838 72.222 0.00 0.00 41.83 5.19
2412 4348 4.180946 CCGGGTCTCGCTCTGACG 62.181 72.222 0.00 0.00 37.59 4.35
2413 4349 4.500116 GCCGGGTCTCGCTCTGAC 62.500 72.222 2.18 0.00 37.59 3.51
2419 4355 4.424566 TAACACGCCGGGTCTCGC 62.425 66.667 2.18 0.00 37.59 5.03
2420 4356 2.202570 CTAACACGCCGGGTCTCG 60.203 66.667 2.18 0.00 38.88 4.04
2421 4357 1.139095 CTCTAACACGCCGGGTCTC 59.861 63.158 2.18 0.00 0.00 3.36
2422 4358 3.003113 GCTCTAACACGCCGGGTCT 62.003 63.158 2.18 0.00 0.00 3.85
2423 4359 2.508663 GCTCTAACACGCCGGGTC 60.509 66.667 2.18 0.00 0.00 4.46
2424 4360 3.307906 TGCTCTAACACGCCGGGT 61.308 61.111 2.18 0.00 0.00 5.28
2425 4361 2.813908 GTGCTCTAACACGCCGGG 60.814 66.667 2.18 0.00 0.00 5.73
2431 4367 0.179119 ATACCCGCGTGCTCTAACAC 60.179 55.000 4.92 0.00 37.19 3.32
2432 4368 1.391577 TATACCCGCGTGCTCTAACA 58.608 50.000 4.92 0.00 0.00 2.41
2433 4369 2.033801 TCTTATACCCGCGTGCTCTAAC 59.966 50.000 4.92 0.00 0.00 2.34
2434 4370 2.033801 GTCTTATACCCGCGTGCTCTAA 59.966 50.000 4.92 0.00 0.00 2.10
2435 4371 1.605710 GTCTTATACCCGCGTGCTCTA 59.394 52.381 4.92 0.00 0.00 2.43
2436 4372 0.384669 GTCTTATACCCGCGTGCTCT 59.615 55.000 4.92 0.00 0.00 4.09
2437 4373 0.596859 GGTCTTATACCCGCGTGCTC 60.597 60.000 4.92 0.00 43.16 4.26
2438 4374 1.440476 GGTCTTATACCCGCGTGCT 59.560 57.895 4.92 0.00 43.16 4.40
2439 4375 4.023173 GGTCTTATACCCGCGTGC 57.977 61.111 4.92 0.00 43.16 5.34
2447 4383 2.966516 CAGGGTGGAGAGGGTCTTATAC 59.033 54.545 0.00 0.00 0.00 1.47
2448 4384 2.590611 ACAGGGTGGAGAGGGTCTTATA 59.409 50.000 0.00 0.00 0.00 0.98
2449 4385 1.366435 ACAGGGTGGAGAGGGTCTTAT 59.634 52.381 0.00 0.00 0.00 1.73
2450 4386 0.790993 ACAGGGTGGAGAGGGTCTTA 59.209 55.000 0.00 0.00 0.00 2.10
2451 4387 0.838122 CACAGGGTGGAGAGGGTCTT 60.838 60.000 0.00 0.00 0.00 3.01
2452 4388 1.229336 CACAGGGTGGAGAGGGTCT 60.229 63.158 0.00 0.00 0.00 3.85
2453 4389 0.252103 TACACAGGGTGGAGAGGGTC 60.252 60.000 1.07 0.00 37.94 4.46
2454 4390 0.544595 GTACACAGGGTGGAGAGGGT 60.545 60.000 1.07 0.00 37.94 4.34
2455 4391 0.252284 AGTACACAGGGTGGAGAGGG 60.252 60.000 0.00 0.00 37.94 4.30
2456 4392 1.276421 CAAGTACACAGGGTGGAGAGG 59.724 57.143 0.00 0.00 37.94 3.69
2457 4393 1.971357 ACAAGTACACAGGGTGGAGAG 59.029 52.381 0.00 0.00 37.94 3.20
2458 4394 2.097110 ACAAGTACACAGGGTGGAGA 57.903 50.000 0.00 0.00 37.94 3.71
2459 4395 2.494059 CAACAAGTACACAGGGTGGAG 58.506 52.381 0.00 0.00 37.94 3.86
2460 4396 1.476110 GCAACAAGTACACAGGGTGGA 60.476 52.381 0.00 0.00 37.94 4.02
2461 4397 0.951558 GCAACAAGTACACAGGGTGG 59.048 55.000 0.00 0.00 37.94 4.61
2462 4398 0.951558 GGCAACAAGTACACAGGGTG 59.048 55.000 0.00 0.00 39.75 4.61
2463 4399 0.179001 GGGCAACAAGTACACAGGGT 60.179 55.000 0.00 0.00 39.74 4.34
2464 4400 1.234615 CGGGCAACAAGTACACAGGG 61.235 60.000 0.00 0.00 39.74 4.45
2465 4401 0.250124 TCGGGCAACAAGTACACAGG 60.250 55.000 0.00 0.00 39.74 4.00
2466 4402 1.732259 GATCGGGCAACAAGTACACAG 59.268 52.381 0.00 0.00 39.74 3.66
2467 4403 1.803334 GATCGGGCAACAAGTACACA 58.197 50.000 0.00 0.00 39.74 3.72
2468 4404 0.719465 CGATCGGGCAACAAGTACAC 59.281 55.000 7.38 0.00 39.74 2.90
2469 4405 0.390603 CCGATCGGGCAACAAGTACA 60.391 55.000 26.95 0.00 39.74 2.90
2470 4406 2.380081 CCGATCGGGCAACAAGTAC 58.620 57.895 26.95 0.00 39.74 2.73
2471 4407 4.924019 CCGATCGGGCAACAAGTA 57.076 55.556 26.95 0.00 39.74 2.24
2481 4417 2.025727 GAGCACGTACCCGATCGG 59.974 66.667 27.65 27.65 37.88 4.18
2482 4418 2.352001 CGAGCACGTACCCGATCG 60.352 66.667 8.51 8.51 37.88 3.69
2483 4419 1.009900 CTCGAGCACGTACCCGATC 60.010 63.158 0.00 0.00 40.69 3.69
2484 4420 2.478890 CCTCGAGCACGTACCCGAT 61.479 63.158 6.99 0.00 40.69 4.18
2485 4421 3.129502 CCTCGAGCACGTACCCGA 61.130 66.667 6.99 0.00 40.69 5.14
2486 4422 3.437795 ACCTCGAGCACGTACCCG 61.438 66.667 6.99 0.00 40.69 5.28
2487 4423 1.870055 TTCACCTCGAGCACGTACCC 61.870 60.000 6.99 0.00 40.69 3.69
2488 4424 0.038892 TTTCACCTCGAGCACGTACC 60.039 55.000 6.99 0.00 40.69 3.34
2489 4425 1.719780 CTTTTCACCTCGAGCACGTAC 59.280 52.381 6.99 0.00 40.69 3.67
2490 4426 1.610038 TCTTTTCACCTCGAGCACGTA 59.390 47.619 6.99 0.00 40.69 3.57
2491 4427 0.387929 TCTTTTCACCTCGAGCACGT 59.612 50.000 6.99 0.00 40.69 4.49
2492 4428 1.192534 GTTCTTTTCACCTCGAGCACG 59.807 52.381 6.99 0.00 41.26 5.34
2493 4429 2.210116 TGTTCTTTTCACCTCGAGCAC 58.790 47.619 6.99 0.00 0.00 4.40
2494 4430 2.102420 TCTGTTCTTTTCACCTCGAGCA 59.898 45.455 6.99 0.00 0.00 4.26
2495 4431 2.755650 TCTGTTCTTTTCACCTCGAGC 58.244 47.619 6.99 0.00 0.00 5.03
2496 4432 5.294552 ACTTTTCTGTTCTTTTCACCTCGAG 59.705 40.000 5.13 5.13 0.00 4.04
2497 4433 5.064707 CACTTTTCTGTTCTTTTCACCTCGA 59.935 40.000 0.00 0.00 0.00 4.04
2498 4434 5.266242 CACTTTTCTGTTCTTTTCACCTCG 58.734 41.667 0.00 0.00 0.00 4.63
2499 4435 5.037385 GCACTTTTCTGTTCTTTTCACCTC 58.963 41.667 0.00 0.00 0.00 3.85
2500 4436 4.142160 GGCACTTTTCTGTTCTTTTCACCT 60.142 41.667 0.00 0.00 0.00 4.00
2501 4437 4.112634 GGCACTTTTCTGTTCTTTTCACC 58.887 43.478 0.00 0.00 0.00 4.02
2502 4438 3.791353 CGGCACTTTTCTGTTCTTTTCAC 59.209 43.478 0.00 0.00 0.00 3.18
2503 4439 3.442273 ACGGCACTTTTCTGTTCTTTTCA 59.558 39.130 0.00 0.00 0.00 2.69
2504 4440 4.028852 ACGGCACTTTTCTGTTCTTTTC 57.971 40.909 0.00 0.00 0.00 2.29
2505 4441 3.181490 GGACGGCACTTTTCTGTTCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
2506 4442 2.357952 GGACGGCACTTTTCTGTTCTTT 59.642 45.455 0.00 0.00 0.00 2.52
2507 4443 1.947456 GGACGGCACTTTTCTGTTCTT 59.053 47.619 0.00 0.00 0.00 2.52
2508 4444 1.594331 GGACGGCACTTTTCTGTTCT 58.406 50.000 0.00 0.00 0.00 3.01
2509 4445 0.234884 CGGACGGCACTTTTCTGTTC 59.765 55.000 0.00 0.00 0.00 3.18
2510 4446 0.463116 ACGGACGGCACTTTTCTGTT 60.463 50.000 0.00 0.00 0.00 3.16
2511 4447 1.145377 ACGGACGGCACTTTTCTGT 59.855 52.632 0.00 0.00 0.00 3.41
2512 4448 1.569493 CACGGACGGCACTTTTCTG 59.431 57.895 0.00 0.00 0.00 3.02
2513 4449 2.251642 GCACGGACGGCACTTTTCT 61.252 57.895 0.00 0.00 0.00 2.52
2514 4450 2.251371 GCACGGACGGCACTTTTC 59.749 61.111 0.00 0.00 0.00 2.29
2515 4451 3.645975 CGCACGGACGGCACTTTT 61.646 61.111 0.00 0.00 0.00 2.27
2527 4463 4.326766 CAAACACCCTGCCGCACG 62.327 66.667 0.00 0.00 0.00 5.34
2528 4464 2.904866 TCAAACACCCTGCCGCAC 60.905 61.111 0.00 0.00 0.00 5.34
2529 4465 2.594303 CTCAAACACCCTGCCGCA 60.594 61.111 0.00 0.00 0.00 5.69
2530 4466 4.043200 GCTCAAACACCCTGCCGC 62.043 66.667 0.00 0.00 0.00 6.53
2531 4467 3.726517 CGCTCAAACACCCTGCCG 61.727 66.667 0.00 0.00 0.00 5.69
2532 4468 4.043200 GCGCTCAAACACCCTGCC 62.043 66.667 0.00 0.00 0.00 4.85
2533 4469 4.043200 GGCGCTCAAACACCCTGC 62.043 66.667 7.64 0.00 0.00 4.85
2534 4470 3.365265 GGGCGCTCAAACACCCTG 61.365 66.667 7.64 0.00 39.42 4.45
2538 4474 1.862602 ATTTCCGGGCGCTCAAACAC 61.863 55.000 8.62 0.00 0.00 3.32
2539 4475 1.582610 GATTTCCGGGCGCTCAAACA 61.583 55.000 8.62 0.00 0.00 2.83
2540 4476 1.136774 GATTTCCGGGCGCTCAAAC 59.863 57.895 8.62 0.00 0.00 2.93
2541 4477 2.043980 GGATTTCCGGGCGCTCAAA 61.044 57.895 8.62 0.60 0.00 2.69
2542 4478 2.437716 GGATTTCCGGGCGCTCAA 60.438 61.111 8.62 0.00 0.00 3.02
2543 4479 3.385749 GAGGATTTCCGGGCGCTCA 62.386 63.158 8.62 0.00 42.08 4.26
2544 4480 2.589159 GAGGATTTCCGGGCGCTC 60.589 66.667 7.64 0.06 42.08 5.03
2545 4481 3.083997 AGAGGATTTCCGGGCGCT 61.084 61.111 7.64 0.00 42.08 5.92
2546 4482 2.897350 CAGAGGATTTCCGGGCGC 60.897 66.667 0.00 0.00 42.08 6.53
2547 4483 1.815421 CACAGAGGATTTCCGGGCG 60.815 63.158 0.00 0.00 42.08 6.13
2548 4484 0.322546 AACACAGAGGATTTCCGGGC 60.323 55.000 0.00 0.00 42.08 6.13
2549 4485 1.279271 AGAACACAGAGGATTTCCGGG 59.721 52.381 0.00 0.00 42.08 5.73
2550 4486 2.770164 AGAACACAGAGGATTTCCGG 57.230 50.000 0.00 0.00 42.08 5.14
2551 4487 5.438761 AAAAAGAACACAGAGGATTTCCG 57.561 39.130 0.00 0.00 42.08 4.30
2552 4488 5.279006 GGGAAAAAGAACACAGAGGATTTCC 60.279 44.000 0.00 0.00 42.29 3.13
2553 4489 5.279006 GGGGAAAAAGAACACAGAGGATTTC 60.279 44.000 0.00 0.00 0.00 2.17
2554 4490 4.588951 GGGGAAAAAGAACACAGAGGATTT 59.411 41.667 0.00 0.00 0.00 2.17
2555 4491 4.140924 AGGGGAAAAAGAACACAGAGGATT 60.141 41.667 0.00 0.00 0.00 3.01
2556 4492 3.399305 AGGGGAAAAAGAACACAGAGGAT 59.601 43.478 0.00 0.00 0.00 3.24
2557 4493 2.783510 AGGGGAAAAAGAACACAGAGGA 59.216 45.455 0.00 0.00 0.00 3.71
2558 4494 3.149981 GAGGGGAAAAAGAACACAGAGG 58.850 50.000 0.00 0.00 0.00 3.69
2559 4495 3.149981 GGAGGGGAAAAAGAACACAGAG 58.850 50.000 0.00 0.00 0.00 3.35
2560 4496 2.486548 CGGAGGGGAAAAAGAACACAGA 60.487 50.000 0.00 0.00 0.00 3.41
2561 4497 1.880027 CGGAGGGGAAAAAGAACACAG 59.120 52.381 0.00 0.00 0.00 3.66
2562 4498 1.491332 TCGGAGGGGAAAAAGAACACA 59.509 47.619 0.00 0.00 0.00 3.72
2563 4499 1.878088 GTCGGAGGGGAAAAAGAACAC 59.122 52.381 0.00 0.00 0.00 3.32
2564 4500 1.202842 GGTCGGAGGGGAAAAAGAACA 60.203 52.381 0.00 0.00 0.00 3.18
2565 4501 1.531423 GGTCGGAGGGGAAAAAGAAC 58.469 55.000 0.00 0.00 0.00 3.01
2566 4502 0.035739 CGGTCGGAGGGGAAAAAGAA 59.964 55.000 0.00 0.00 0.00 2.52
2567 4503 1.123246 ACGGTCGGAGGGGAAAAAGA 61.123 55.000 0.00 0.00 0.00 2.52
2568 4504 0.953960 CACGGTCGGAGGGGAAAAAG 60.954 60.000 0.00 0.00 0.00 2.27
2569 4505 1.071814 CACGGTCGGAGGGGAAAAA 59.928 57.895 0.00 0.00 0.00 1.94
2570 4506 2.103339 GACACGGTCGGAGGGGAAAA 62.103 60.000 0.00 0.00 0.00 2.29
2571 4507 2.524887 ACACGGTCGGAGGGGAAA 60.525 61.111 0.00 0.00 0.00 3.13
2572 4508 2.993264 GACACGGTCGGAGGGGAA 60.993 66.667 0.00 0.00 0.00 3.97
2573 4509 3.933048 GAGACACGGTCGGAGGGGA 62.933 68.421 0.00 0.00 37.67 4.81
2574 4510 3.450115 GAGACACGGTCGGAGGGG 61.450 72.222 0.00 0.00 37.67 4.79
2575 4511 3.450115 GGAGACACGGTCGGAGGG 61.450 72.222 0.00 0.00 37.67 4.30
2576 4512 3.812019 CGGAGACACGGTCGGAGG 61.812 72.222 0.00 0.00 37.67 4.30
2584 4520 1.153823 GGTGATCACCGGAGACACG 60.154 63.158 28.52 0.00 42.29 4.49
2585 4521 4.913126 GGTGATCACCGGAGACAC 57.087 61.111 28.52 16.18 42.29 3.67
2594 4530 0.450583 TAGCACTCGACGGTGATCAC 59.549 55.000 17.91 17.91 39.34 3.06
2595 4531 0.733150 CTAGCACTCGACGGTGATCA 59.267 55.000 17.18 0.00 39.34 2.92
2596 4532 0.029567 CCTAGCACTCGACGGTGATC 59.970 60.000 17.18 4.14 39.34 2.92
2597 4533 0.680280 ACCTAGCACTCGACGGTGAT 60.680 55.000 17.18 14.12 39.34 3.06
2598 4534 1.303074 ACCTAGCACTCGACGGTGA 60.303 57.895 17.18 0.85 39.34 4.02
2599 4535 1.136984 GACCTAGCACTCGACGGTG 59.863 63.158 10.85 10.85 39.91 4.94
2600 4536 1.303074 TGACCTAGCACTCGACGGT 60.303 57.895 0.00 0.00 0.00 4.83
2601 4537 1.429825 CTGACCTAGCACTCGACGG 59.570 63.158 0.00 0.00 0.00 4.79
2602 4538 1.429825 CCTGACCTAGCACTCGACG 59.570 63.158 0.00 0.00 0.00 5.12
2603 4539 1.139947 GCCTGACCTAGCACTCGAC 59.860 63.158 0.00 0.00 0.00 4.20
2604 4540 1.000771 AGCCTGACCTAGCACTCGA 60.001 57.895 0.00 0.00 0.00 4.04
2605 4541 1.140589 CAGCCTGACCTAGCACTCG 59.859 63.158 0.00 0.00 0.00 4.18
2606 4542 1.153469 GCAGCCTGACCTAGCACTC 60.153 63.158 0.00 0.00 0.00 3.51
2607 4543 2.985456 GCAGCCTGACCTAGCACT 59.015 61.111 0.00 0.00 0.00 4.40
2608 4544 2.510238 CGCAGCCTGACCTAGCAC 60.510 66.667 0.00 0.00 0.00 4.40
2621 4557 3.289834 AGCTTGGTGTTGGCGCAG 61.290 61.111 10.83 0.00 0.00 5.18
2622 4558 3.594775 CAGCTTGGTGTTGGCGCA 61.595 61.111 10.83 0.00 0.00 6.09
2623 4559 4.347453 CCAGCTTGGTGTTGGCGC 62.347 66.667 0.00 0.00 40.11 6.53
2626 4562 1.364901 CAAGCCAGCTTGGTGTTGG 59.635 57.895 21.98 0.00 46.88 3.77
2634 4570 2.113986 AACGAGCCAAGCCAGCTT 59.886 55.556 0.00 0.00 41.75 3.74
2676 4612 3.416156 GATCTTGTTGAGCTCCAGGTTT 58.584 45.455 12.15 0.00 0.00 3.27
2786 4722 2.475466 CGCAAGCCGCAGATGGAAT 61.475 57.895 0.00 0.00 42.60 3.01
2815 4752 1.543429 CGTTGTTGGAAAGGGAGAGCT 60.543 52.381 0.00 0.00 0.00 4.09
3059 5000 3.217743 CGGTACCTCCTCGGCTCC 61.218 72.222 10.90 0.00 35.61 4.70
3060 5001 3.217743 CCGGTACCTCCTCGGCTC 61.218 72.222 10.90 0.00 37.25 4.70
3061 5002 3.736224 TCCGGTACCTCCTCGGCT 61.736 66.667 10.90 0.00 43.10 5.52
3062 5003 3.525545 GTCCGGTACCTCCTCGGC 61.526 72.222 10.90 0.00 43.10 5.54
3063 5004 1.455217 ATGTCCGGTACCTCCTCGG 60.455 63.158 10.90 5.72 44.59 4.63
3064 5005 1.734137 CATGTCCGGTACCTCCTCG 59.266 63.158 10.90 0.00 0.00 4.63
3065 5006 0.686769 ACCATGTCCGGTACCTCCTC 60.687 60.000 10.90 0.00 37.57 3.71
3066 5007 0.686769 GACCATGTCCGGTACCTCCT 60.687 60.000 10.90 0.00 40.22 3.69
3067 5008 0.686769 AGACCATGTCCGGTACCTCC 60.687 60.000 10.90 0.00 40.22 4.30
3305 5281 0.976073 GGATCTCACCGGTCAGGGAA 60.976 60.000 5.35 0.00 46.96 3.97
3399 5375 2.551270 CGCAAAGACGCCAGTGTC 59.449 61.111 3.11 3.11 39.21 3.67
3656 5633 0.821517 TGTACTTCATCACCGGCGAT 59.178 50.000 9.30 0.00 0.00 4.58
3686 5663 0.179100 CCAGCTCCTGGTACGTGATG 60.179 60.000 0.00 0.00 45.82 3.07
3720 5697 1.185618 AGCCGGTCTGCACTGAACTA 61.186 55.000 1.90 0.00 0.00 2.24
3790 5767 0.888736 CTTCACGGCAACCATGGTGA 60.889 55.000 20.60 7.32 37.61 4.02
3826 5803 0.108567 GCTCTTGGTCGAGTTCCCTC 60.109 60.000 0.00 0.00 33.55 4.30
3898 5875 1.270518 GGCTGCATACGGTGATGATCT 60.271 52.381 0.50 0.00 0.00 2.75
3955 5936 4.087892 GCTCGAGGCTGCCCTTCA 62.088 66.667 16.57 0.00 43.12 3.02
4138 6119 1.285950 CCGAAGTCAGACACGAGCA 59.714 57.895 17.71 0.00 0.00 4.26
4210 6191 3.286694 ATGTTGGCGGTGGAGGCAT 62.287 57.895 0.00 0.00 46.15 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.