Multiple sequence alignment - TraesCS5D01G230000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G230000 chr5D 100.000 5122 0 0 1 5122 337186767 337181646 0.000000e+00 9459.0
1 TraesCS5D01G230000 chr5D 91.976 1346 90 4 2613 3958 337216431 337215104 0.000000e+00 1871.0
2 TraesCS5D01G230000 chr5D 89.025 1303 119 14 642 1935 337218829 337217542 0.000000e+00 1592.0
3 TraesCS5D01G230000 chr5D 89.740 653 58 3 1931 2575 337217085 337216434 0.000000e+00 826.0
4 TraesCS5D01G230000 chr5D 86.235 247 20 6 4647 4880 337154408 337154653 6.580000e-64 255.0
5 TraesCS5D01G230000 chr5D 93.496 123 8 0 3954 4076 337209677 337209555 3.150000e-42 183.0
6 TraesCS5D01G230000 chr5D 82.258 124 18 4 4278 4399 337182369 337182490 2.520000e-18 104.0
7 TraesCS5D01G230000 chr5D 89.873 79 6 2 4400 4476 337207531 337207453 3.260000e-17 100.0
8 TraesCS5D01G230000 chr5D 100.000 34 0 0 1 34 337219207 337219174 4.280000e-06 63.9
9 TraesCS5D01G230000 chr5B 93.625 4141 242 12 154 4279 395684724 395680591 0.000000e+00 6165.0
10 TraesCS5D01G230000 chr5B 88.075 1065 107 7 885 1935 395709766 395708708 0.000000e+00 1245.0
11 TraesCS5D01G230000 chr5B 89.100 1000 69 12 1931 2924 395708225 395707260 0.000000e+00 1206.0
12 TraesCS5D01G230000 chr5B 89.892 554 28 16 4585 5122 395680443 395679902 0.000000e+00 688.0
13 TraesCS5D01G230000 chr5B 92.409 303 19 1 3147 3445 395707262 395706960 3.660000e-116 429.0
14 TraesCS5D01G230000 chr5B 94.444 180 10 0 702 881 395710110 395709931 1.400000e-70 278.0
15 TraesCS5D01G230000 chr5B 86.475 244 23 4 154 391 395710525 395710286 5.090000e-65 259.0
16 TraesCS5D01G230000 chr5B 93.168 161 11 0 4397 4557 395680593 395680433 2.380000e-58 237.0
17 TraesCS5D01G230000 chr5B 94.074 135 5 3 32 163 581144514 581144380 8.700000e-48 202.0
18 TraesCS5D01G230000 chr5B 92.241 116 6 2 3961 4076 395706960 395706848 1.480000e-35 161.0
19 TraesCS5D01G230000 chr5B 82.482 137 13 5 4155 4280 395706796 395706660 5.420000e-20 110.0
20 TraesCS5D01G230000 chr5A 92.336 4149 240 25 154 4244 438358394 438354266 0.000000e+00 5829.0
21 TraesCS5D01G230000 chr5A 89.973 3301 274 20 796 4076 438410848 438407585 0.000000e+00 4209.0
22 TraesCS5D01G230000 chr5A 91.598 488 32 8 4571 5049 438353945 438353458 0.000000e+00 665.0
23 TraesCS5D01G230000 chr5A 88.593 263 19 3 154 411 438412269 438412013 4.980000e-80 309.0
24 TraesCS5D01G230000 chr5A 93.750 160 8 1 4401 4560 438354200 438354043 6.630000e-59 239.0
25 TraesCS5D01G230000 chr5A 88.372 129 13 2 642 770 438411887 438411761 2.470000e-33 154.0
26 TraesCS5D01G230000 chr5A 82.014 139 12 7 4155 4280 438407532 438407394 7.010000e-19 106.0
27 TraesCS5D01G230000 chr5A 92.308 52 4 0 4229 4280 438354249 438354198 1.980000e-09 75.0
28 TraesCS5D01G230000 chr5A 100.000 34 0 0 1 34 438358423 438358390 4.280000e-06 63.9
29 TraesCS5D01G230000 chrUn 96.899 129 3 1 31 158 11031658 11031786 1.120000e-51 215.0
30 TraesCS5D01G230000 chr1B 94.776 134 5 2 26 158 71638877 71639009 1.870000e-49 207.0
31 TraesCS5D01G230000 chr1B 94.118 136 6 2 31 164 623731983 623732118 6.720000e-49 206.0
32 TraesCS5D01G230000 chr1B 88.889 54 1 3 4257 4307 596247448 596247397 1.540000e-05 62.1
33 TraesCS5D01G230000 chr6B 94.118 136 6 2 25 158 462911652 462911787 6.720000e-49 206.0
34 TraesCS5D01G230000 chr6B 88.235 51 5 1 4278 4328 705793542 705793493 5.540000e-05 60.2
35 TraesCS5D01G230000 chr6B 88.235 51 5 1 4278 4328 706122030 706121981 5.540000e-05 60.2
36 TraesCS5D01G230000 chr4D 94.737 133 6 1 33 164 117644075 117643943 6.720000e-49 206.0
37 TraesCS5D01G230000 chr4D 92.308 78 1 3 4330 4402 69190400 69190477 7.010000e-19 106.0
38 TraesCS5D01G230000 chr4D 90.361 83 2 5 4330 4407 412711763 412711682 2.520000e-18 104.0
39 TraesCS5D01G230000 chr3A 92.958 142 6 3 22 159 126854226 126854085 2.420000e-48 204.0
40 TraesCS5D01G230000 chr3A 100.000 35 0 0 4272 4306 468019773 468019807 1.190000e-06 65.8
41 TraesCS5D01G230000 chr3D 92.857 140 9 1 25 163 614251084 614251223 8.700000e-48 202.0
42 TraesCS5D01G230000 chr3D 92.647 136 8 2 32 166 600658140 600658274 1.460000e-45 195.0
43 TraesCS5D01G230000 chr3D 83.969 131 7 7 4277 4400 569310396 569310519 4.190000e-21 113.0
44 TraesCS5D01G230000 chr3D 89.011 91 4 5 4330 4414 65607239 65607329 1.950000e-19 108.0
45 TraesCS5D01G230000 chr3D 90.361 83 2 4 4330 4406 355714680 355714598 2.520000e-18 104.0
46 TraesCS5D01G230000 chr2B 85.926 135 5 6 4277 4406 777495026 777494901 1.160000e-26 132.0
47 TraesCS5D01G230000 chr2B 79.365 126 10 5 4278 4399 146771701 146771814 1.980000e-09 75.0
48 TraesCS5D01G230000 chr2B 90.566 53 2 3 4276 4328 27537058 27537107 3.310000e-07 67.6
49 TraesCS5D01G230000 chr1D 83.803 142 7 7 4267 4401 212424807 212424939 2.500000e-23 121.0
50 TraesCS5D01G230000 chr1D 92.000 75 4 2 4330 4404 418174389 418174317 2.520000e-18 104.0
51 TraesCS5D01G230000 chr6D 90.244 82 3 3 4330 4406 201577418 201577337 9.070000e-18 102.0
52 TraesCS5D01G230000 chr6D 90.244 82 3 3 4330 4406 307732425 307732344 9.070000e-18 102.0
53 TraesCS5D01G230000 chr7D 81.890 127 9 6 4278 4399 485101804 485101687 1.520000e-15 95.3
54 TraesCS5D01G230000 chr2A 84.783 92 4 5 4316 4403 3277562 3277647 3.290000e-12 84.2
55 TraesCS5D01G230000 chr7A 100.000 35 0 0 4273 4307 80596384 80596418 1.190000e-06 65.8
56 TraesCS5D01G230000 chr7B 93.023 43 2 1 4263 4305 186814154 186814113 1.540000e-05 62.1
57 TraesCS5D01G230000 chr4A 89.796 49 2 2 4259 4307 595546930 595546885 5.540000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G230000 chr5D 337181646 337186767 5121 True 9459.000000 9459 100.000000 1 5122 1 chr5D.!!$R1 5121
1 TraesCS5D01G230000 chr5D 337215104 337219207 4103 True 1088.225000 1871 92.685250 1 3958 4 chr5D.!!$R3 3957
2 TraesCS5D01G230000 chr5B 395679902 395684724 4822 True 2363.333333 6165 92.228333 154 5122 3 chr5B.!!$R2 4968
3 TraesCS5D01G230000 chr5B 395706660 395710525 3865 True 526.857143 1245 89.318000 154 4280 7 chr5B.!!$R3 4126
4 TraesCS5D01G230000 chr5A 438353458 438358423 4965 True 1374.380000 5829 93.998400 1 5049 5 chr5A.!!$R1 5048
5 TraesCS5D01G230000 chr5A 438407394 438412269 4875 True 1194.500000 4209 87.238000 154 4280 4 chr5A.!!$R2 4126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.034283 AGTGAGTACTCCCTCCGTCC 60.034 60.0 20.11 0.0 28.79 4.79 F
49 50 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.00 0.0 0.00 3.28 F
1687 2808 0.108281 GCTAACCGGAAGACTCCCAC 60.108 60.0 9.46 0.0 38.71 4.61 F
2682 4763 0.169672 CGAAATGCACCAGCCTGAAG 59.830 55.0 0.00 0.0 41.13 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 2657 0.191064 AGAGAATGGCCGGGATAGGA 59.809 55.0 2.18 0.0 0.00 2.94 R
1717 2838 0.325933 TTGTCCTCCACATCCAGCAG 59.674 55.0 0.00 0.0 33.90 4.24 R
3042 5124 0.036858 GGTCTGCACTGAACTCCTCC 60.037 60.0 0.00 0.0 0.00 4.30 R
4628 7097 0.668535 GTGCTGTGACACCCTTTTCC 59.331 55.0 2.45 0.0 34.35 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.134379 CAGCTGATGGATGTTAGTGAGT 57.866 45.455 8.42 0.00 0.00 3.41
33 34 5.268118 CAGCTGATGGATGTTAGTGAGTA 57.732 43.478 8.42 0.00 0.00 2.59
34 35 5.046529 CAGCTGATGGATGTTAGTGAGTAC 58.953 45.833 8.42 0.00 0.00 2.73
35 36 4.959210 AGCTGATGGATGTTAGTGAGTACT 59.041 41.667 0.00 0.00 40.99 2.73
36 37 5.068460 AGCTGATGGATGTTAGTGAGTACTC 59.932 44.000 16.32 16.32 38.36 2.59
37 38 5.737635 GCTGATGGATGTTAGTGAGTACTCC 60.738 48.000 20.11 11.29 38.36 3.85
38 39 4.649674 TGATGGATGTTAGTGAGTACTCCC 59.350 45.833 20.11 8.98 38.36 4.30
39 40 4.332683 TGGATGTTAGTGAGTACTCCCT 57.667 45.455 20.11 16.33 38.36 4.20
40 41 4.279145 TGGATGTTAGTGAGTACTCCCTC 58.721 47.826 20.11 10.45 38.36 4.30
41 42 3.637694 GGATGTTAGTGAGTACTCCCTCC 59.362 52.174 20.11 11.49 38.36 4.30
42 43 2.719739 TGTTAGTGAGTACTCCCTCCG 58.280 52.381 20.11 0.00 38.36 4.63
43 44 2.040813 TGTTAGTGAGTACTCCCTCCGT 59.959 50.000 20.11 1.31 38.36 4.69
44 45 2.682352 GTTAGTGAGTACTCCCTCCGTC 59.318 54.545 20.11 2.55 38.36 4.79
45 46 0.034283 AGTGAGTACTCCCTCCGTCC 60.034 60.000 20.11 0.00 28.79 4.79
46 47 1.036481 GTGAGTACTCCCTCCGTCCC 61.036 65.000 20.11 0.00 0.00 4.46
47 48 1.305623 GAGTACTCCCTCCGTCCCA 59.694 63.158 12.13 0.00 0.00 4.37
48 49 0.324091 GAGTACTCCCTCCGTCCCAA 60.324 60.000 12.13 0.00 0.00 4.12
49 50 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
50 51 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
51 52 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
52 53 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
53 54 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
54 55 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
55 56 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
56 57 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
57 58 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
58 59 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
59 60 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
60 61 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
61 62 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
62 63 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
63 64 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
64 65 5.106673 CCGTCCCAAAATTCTTGTCTTAGAC 60.107 44.000 5.27 5.27 0.00 2.59
65 66 5.701290 CGTCCCAAAATTCTTGTCTTAGACT 59.299 40.000 13.86 0.00 33.15 3.24
66 67 6.872020 CGTCCCAAAATTCTTGTCTTAGACTA 59.128 38.462 13.86 5.12 33.15 2.59
67 68 7.063544 CGTCCCAAAATTCTTGTCTTAGACTAG 59.936 40.741 15.72 15.72 36.91 2.57
68 69 7.878644 GTCCCAAAATTCTTGTCTTAGACTAGT 59.121 37.037 19.72 0.00 36.91 2.57
69 70 8.095169 TCCCAAAATTCTTGTCTTAGACTAGTC 58.905 37.037 19.72 15.41 36.91 2.59
70 71 8.097662 CCCAAAATTCTTGTCTTAGACTAGTCT 58.902 37.037 27.72 27.72 43.40 3.24
74 75 9.536510 AAATTCTTGTCTTAGACTAGTCTAGGT 57.463 33.333 30.44 14.59 42.50 3.08
76 77 9.617523 ATTCTTGTCTTAGACTAGTCTAGGTAC 57.382 37.037 30.44 26.27 42.50 3.34
77 78 7.264221 TCTTGTCTTAGACTAGTCTAGGTACG 58.736 42.308 30.44 21.22 42.50 3.67
78 79 5.911752 TGTCTTAGACTAGTCTAGGTACGG 58.088 45.833 30.44 18.34 42.50 4.02
79 80 5.658634 TGTCTTAGACTAGTCTAGGTACGGA 59.341 44.000 30.44 19.71 42.50 4.69
80 81 6.326064 TGTCTTAGACTAGTCTAGGTACGGAT 59.674 42.308 30.44 9.76 42.50 4.18
81 82 6.646240 GTCTTAGACTAGTCTAGGTACGGATG 59.354 46.154 30.44 14.85 42.50 3.51
82 83 6.326064 TCTTAGACTAGTCTAGGTACGGATGT 59.674 42.308 30.44 9.15 42.50 3.06
83 84 7.507277 TCTTAGACTAGTCTAGGTACGGATGTA 59.493 40.741 30.44 14.25 42.50 2.29
84 85 6.684897 AGACTAGTCTAGGTACGGATGTAT 57.315 41.667 24.04 0.00 38.35 2.29
85 86 6.700352 AGACTAGTCTAGGTACGGATGTATC 58.300 44.000 24.04 0.00 38.35 2.24
86 87 6.497954 AGACTAGTCTAGGTACGGATGTATCT 59.502 42.308 24.04 0.00 44.27 1.98
87 88 7.673504 AGACTAGTCTAGGTACGGATGTATCTA 59.326 40.741 24.04 0.00 42.13 1.98
88 89 8.200024 ACTAGTCTAGGTACGGATGTATCTAA 57.800 38.462 11.61 0.00 42.31 2.10
89 90 8.824783 ACTAGTCTAGGTACGGATGTATCTAAT 58.175 37.037 11.61 0.00 42.31 1.73
92 93 8.824783 AGTCTAGGTACGGATGTATCTAATACT 58.175 37.037 0.00 2.24 42.31 2.12
115 116 8.997621 ACTAAAACATGACTTGATACATACGT 57.002 30.769 0.00 0.00 0.00 3.57
146 147 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
147 148 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
148 149 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
149 150 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
150 151 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
151 152 2.514803 AGACAAGAATTTTGGGACGGG 58.485 47.619 0.00 0.00 0.00 5.28
152 153 1.544246 GACAAGAATTTTGGGACGGGG 59.456 52.381 0.00 0.00 0.00 5.73
417 432 3.395054 ACTCCAGATCTGTGAGATGGA 57.605 47.619 31.37 18.16 34.53 3.41
454 469 2.099921 AGAGATACACACGCTTGCCTAG 59.900 50.000 0.00 0.00 0.00 3.02
518 537 7.673926 AGAAAATACATTGTACACAAGGGGATT 59.326 33.333 11.04 6.48 41.44 3.01
567 587 5.776173 ACAGTATTTCCCGAGACAGATAG 57.224 43.478 0.00 0.00 0.00 2.08
639 659 2.625823 CGGCCATTGCAACCTCGTT 61.626 57.895 0.00 0.00 40.13 3.85
692 720 1.152881 AATTGCCGAGCCATCTCCC 60.153 57.895 0.00 0.00 35.94 4.30
883 1798 0.179034 GCTGCATCCTTTCCGATCCT 60.179 55.000 0.00 0.00 0.00 3.24
898 1989 1.767681 GATCCTTCTCTGGTGCATCCT 59.232 52.381 0.00 0.00 37.07 3.24
917 2008 3.722627 TCCTGCCTATAGAGTAGTGACCT 59.277 47.826 0.00 0.00 0.00 3.85
934 2025 0.969149 CCTGAGATGCTACCGCCATA 59.031 55.000 0.00 0.00 34.43 2.74
935 2026 1.067283 CCTGAGATGCTACCGCCATAG 60.067 57.143 0.00 0.00 34.43 2.23
936 2027 0.318441 TGAGATGCTACCGCCATAGC 59.682 55.000 6.88 6.88 46.58 2.97
937 2028 0.605589 GAGATGCTACCGCCATAGCT 59.394 55.000 13.45 0.00 46.54 3.32
1068 2189 1.379044 CCACCTCATGCCCTTCCAC 60.379 63.158 0.00 0.00 0.00 4.02
1167 2288 2.058595 GGAGAAGGCCACGCTCCTA 61.059 63.158 23.71 0.00 43.79 2.94
1293 2414 3.190849 CAGCACGTCATCGGCCTG 61.191 66.667 0.00 0.00 41.85 4.85
1296 2417 2.261361 CACGTCATCGGCCTGTCA 59.739 61.111 0.00 0.00 41.85 3.58
1323 2444 1.442526 GCATGAACATCTCTGGCCCG 61.443 60.000 0.00 0.00 0.00 6.13
1361 2482 0.687354 AACCTCACACGCCTCAAGAT 59.313 50.000 0.00 0.00 0.00 2.40
1374 2495 3.539604 CCTCAAGATCCTTGACATGTCC 58.460 50.000 22.85 6.41 0.00 4.02
1377 2498 3.840078 TCAAGATCCTTGACATGTCCAGA 59.160 43.478 24.63 17.49 0.00 3.86
1383 2504 6.723052 AGATCCTTGACATGTCCAGAAATTTT 59.277 34.615 24.63 9.90 0.00 1.82
1387 2508 6.016024 CCTTGACATGTCCAGAAATTTTCTCA 60.016 38.462 24.63 5.26 38.11 3.27
1398 2519 5.649395 CAGAAATTTTCTCACAGGGCAGATA 59.351 40.000 8.71 0.00 38.11 1.98
1423 2544 2.604686 AGCTCTCCAACCTCCGCA 60.605 61.111 0.00 0.00 0.00 5.69
1426 2547 2.922503 TCTCCAACCTCCGCAGCA 60.923 61.111 0.00 0.00 0.00 4.41
1429 2550 2.825836 CCAACCTCCGCAGCATCC 60.826 66.667 0.00 0.00 0.00 3.51
1431 2552 2.110967 CAACCTCCGCAGCATCCAG 61.111 63.158 0.00 0.00 0.00 3.86
1486 2607 4.816984 TCCCGCCGTCCCTCTCTC 62.817 72.222 0.00 0.00 0.00 3.20
1512 2633 1.269309 GCGAGCATGTACTACCTCAGG 60.269 57.143 0.00 0.00 0.00 3.86
1524 2645 3.707102 ACTACCTCAGGCTCAAGGATAAC 59.293 47.826 17.28 0.00 36.46 1.89
1527 2648 2.420687 CCTCAGGCTCAAGGATAACCAC 60.421 54.545 6.62 0.00 38.94 4.16
1549 2670 2.445845 CAGGTCCTATCCCGGCCA 60.446 66.667 2.24 0.00 0.00 5.36
1566 2687 3.416156 GGCCATTCTCTTCAAGAACTGT 58.584 45.455 0.00 0.00 46.61 3.55
1602 2723 1.200839 CGACTTCGGCAACAACGAC 59.799 57.895 0.00 0.00 40.45 4.34
1605 2726 0.878961 ACTTCGGCAACAACGACCTC 60.879 55.000 0.00 0.00 40.45 3.85
1611 2732 1.374252 CAACAACGACCTCTCCGGG 60.374 63.158 0.00 0.00 36.97 5.73
1643 2764 0.108804 GACGCCTCGGAGAACATTCA 60.109 55.000 6.58 0.00 34.09 2.57
1644 2765 0.320374 ACGCCTCGGAGAACATTCAA 59.680 50.000 6.58 0.00 34.09 2.69
1647 2768 2.003301 GCCTCGGAGAACATTCAAGTC 58.997 52.381 6.58 0.00 34.09 3.01
1679 2800 0.323629 TCCAACAGGCTAACCGGAAG 59.676 55.000 9.46 6.30 42.76 3.46
1687 2808 0.108281 GCTAACCGGAAGACTCCCAC 60.108 60.000 9.46 0.00 38.71 4.61
1695 2816 2.113243 GAAGACTCCCACGGTGGCTT 62.113 60.000 21.88 17.93 45.81 4.35
1717 2838 2.614057 GCCAACTGCACATATCTGTACC 59.386 50.000 0.00 0.00 40.77 3.34
1783 2904 0.533531 CATCATAGCGGGCAAGCAGA 60.534 55.000 6.94 2.54 40.15 4.26
1785 2906 0.181114 TCATAGCGGGCAAGCAGAAT 59.819 50.000 6.94 0.00 40.15 2.40
1813 2934 1.412343 ACCTGCATTTGTCCAACAACC 59.588 47.619 0.00 0.00 37.90 3.77
1905 3026 0.851469 TACTGGAGATAGAGGCCGGT 59.149 55.000 1.90 0.00 43.42 5.28
1908 3029 1.834822 GGAGATAGAGGCCGGTGCT 60.835 63.158 1.90 0.11 37.74 4.40
1912 3033 3.391665 ATAGAGGCCGGTGCTGTGC 62.392 63.158 1.90 0.00 37.74 4.57
1968 4037 0.478072 TGCTCCCACCAAACATGTCT 59.522 50.000 0.00 0.00 0.00 3.41
1991 4060 1.294659 CTCAACCTGGAGCTCAACGC 61.295 60.000 17.19 0.00 39.57 4.84
1996 4065 1.153765 CTGGAGCTCAACGCGATCA 60.154 57.895 15.93 0.19 45.59 2.92
1997 4066 1.144565 CTGGAGCTCAACGCGATCAG 61.145 60.000 15.93 0.00 45.59 2.90
2135 4204 0.679505 CTCTCCCTGTCCAACAACGA 59.320 55.000 0.00 0.00 0.00 3.85
2274 4347 2.224523 CCTCTACCTGCAGAACAACCAA 60.225 50.000 17.39 0.00 0.00 3.67
2431 4512 2.301296 CACAACCAGATCAGAGGTGAGT 59.699 50.000 5.42 5.32 38.37 3.41
2518 4599 1.000993 ACGATCTCCCCACAGCTCT 59.999 57.895 0.00 0.00 0.00 4.09
2575 4656 3.165160 AACTTGCTCACCGGCGTCT 62.165 57.895 6.01 0.00 34.52 4.18
2577 4658 2.664851 TTGCTCACCGGCGTCTTG 60.665 61.111 6.01 0.00 34.52 3.02
2626 4707 3.300711 AAAAACCTGGACGTCTCCG 57.699 52.632 16.46 5.18 39.88 4.63
2682 4763 0.169672 CGAAATGCACCAGCCTGAAG 59.830 55.000 0.00 0.00 41.13 3.02
2838 4920 2.189521 CCATGGTACCAGTCCCGC 59.810 66.667 21.41 0.00 0.00 6.13
2850 4932 2.355310 CCAGTCCCGCAAGTATTTGGTA 60.355 50.000 0.00 0.00 34.79 3.25
2860 4942 4.155826 GCAAGTATTTGGTAGTGATGTGCA 59.844 41.667 0.00 0.00 34.79 4.57
2941 5023 1.890979 CGGGATTGGCTAGCTGCAG 60.891 63.158 15.72 10.11 45.15 4.41
2964 5046 1.609783 GGAGGACATGTTCAGGGGG 59.390 63.158 6.96 0.00 0.00 5.40
3005 5087 3.070446 TCACCGGTGATGAAGTACAAGTT 59.930 43.478 33.23 0.00 34.14 2.66
3039 5121 2.045536 CAGGAGCTGGTTGAGGCC 60.046 66.667 0.00 0.00 0.00 5.19
3042 5124 2.743928 GAGCTGGTTGAGGCCACG 60.744 66.667 5.01 0.00 34.36 4.94
3066 5148 1.598130 GTTCAGTGCAGACCGGCTT 60.598 57.895 0.00 0.00 34.04 4.35
3270 5577 1.192146 ACTTCAAGGCGCTGGTCCTA 61.192 55.000 7.64 0.00 32.65 2.94
3366 5677 1.466167 GTCAACATCTGCAGCGACATT 59.534 47.619 9.47 0.00 0.00 2.71
3420 5731 1.369625 CGGTCAAGGTTATCCACTGC 58.630 55.000 0.00 0.00 35.89 4.40
3465 5776 1.733041 CAACGACGACATGACCGCT 60.733 57.895 0.00 0.00 0.00 5.52
3516 5827 4.344865 ATGAGCGTTGGCGGGGTT 62.345 61.111 0.00 0.00 46.35 4.11
3573 5884 2.819595 CTGTGCGGTTCCATCGGG 60.820 66.667 0.00 0.00 0.00 5.14
3589 5900 1.288633 TCGGGTACATTCCTCCAGGTA 59.711 52.381 0.00 0.00 36.34 3.08
3590 5901 1.411612 CGGGTACATTCCTCCAGGTAC 59.588 57.143 0.00 0.00 36.30 3.34
3591 5902 1.411612 GGGTACATTCCTCCAGGTACG 59.588 57.143 0.00 0.00 37.55 3.67
3592 5903 2.105766 GGTACATTCCTCCAGGTACGT 58.894 52.381 0.00 0.00 37.55 3.57
3593 5904 3.290710 GGTACATTCCTCCAGGTACGTA 58.709 50.000 0.00 0.00 37.55 3.57
3594 5905 3.067320 GGTACATTCCTCCAGGTACGTAC 59.933 52.174 17.56 17.56 37.55 3.67
3595 5906 2.105766 ACATTCCTCCAGGTACGTACC 58.894 52.381 33.16 33.16 46.82 3.34
3627 5949 4.152402 ACACACTGCTAAAGCTAATTCACG 59.848 41.667 3.26 0.00 42.66 4.35
3642 5964 0.454600 TCACGAGCTATTCCGGTGAC 59.545 55.000 0.00 0.00 0.00 3.67
3667 5989 6.406400 CGAGTTCCCAGATTCTTAGTTCTGAT 60.406 42.308 13.55 0.00 41.53 2.90
3692 6014 3.740115 TGAGTGGTTCTTACTTCTTGGC 58.260 45.455 0.00 0.00 0.00 4.52
3944 6266 3.493830 GATGTCGGACGCGGCCATA 62.494 63.158 33.95 16.63 0.00 2.74
4008 6330 4.508128 CCACGCGCCCGTCTATGT 62.508 66.667 5.73 0.00 46.39 2.29
4116 6438 5.999600 TCATCCACGGTAGTCGAAGATATTA 59.000 40.000 0.00 0.00 40.67 0.98
4187 6518 2.690786 ACGTTGTGTATGCGTGGTTAT 58.309 42.857 0.00 0.00 37.47 1.89
4227 6571 3.818180 AGGGAGAAGATGATCACAATGC 58.182 45.455 0.00 0.00 0.00 3.56
4282 6658 9.595823 TTTGATGTACTATAAGCTTTGTACTCC 57.404 33.333 24.21 18.93 36.98 3.85
4283 6659 7.723324 TGATGTACTATAAGCTTTGTACTCCC 58.277 38.462 24.21 17.50 36.98 4.30
4284 6660 7.563924 TGATGTACTATAAGCTTTGTACTCCCT 59.436 37.037 24.21 13.98 36.98 4.20
4285 6661 7.344095 TGTACTATAAGCTTTGTACTCCCTC 57.656 40.000 24.21 9.13 36.98 4.30
4286 6662 5.873146 ACTATAAGCTTTGTACTCCCTCC 57.127 43.478 3.20 0.00 0.00 4.30
4287 6663 3.821421 ATAAGCTTTGTACTCCCTCCG 57.179 47.619 3.20 0.00 0.00 4.63
4288 6664 1.349067 AAGCTTTGTACTCCCTCCGT 58.651 50.000 0.00 0.00 0.00 4.69
4289 6665 1.349067 AGCTTTGTACTCCCTCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
4290 6666 1.275573 AGCTTTGTACTCCCTCCGTTC 59.724 52.381 0.00 0.00 0.00 3.95
4291 6667 1.675116 GCTTTGTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
4292 6668 1.621814 CTTTGTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
4293 6669 1.719529 TTGTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
4294 6670 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
4295 6671 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
4296 6672 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
4297 6673 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
4298 6674 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4299 6675 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4300 6676 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4301 6677 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4302 6678 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4303 6679 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4304 6680 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4305 6681 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
4306 6682 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
4307 6683 2.727798 CGTTCCAAATTACTCGTCGTGT 59.272 45.455 5.19 5.19 0.00 4.49
4308 6684 3.181546 CGTTCCAAATTACTCGTCGTGTC 60.182 47.826 2.75 0.00 0.00 3.67
4309 6685 3.928727 TCCAAATTACTCGTCGTGTCT 57.071 42.857 2.75 0.00 0.00 3.41
4310 6686 5.156355 GTTCCAAATTACTCGTCGTGTCTA 58.844 41.667 2.75 0.00 0.00 2.59
4311 6687 5.571784 TCCAAATTACTCGTCGTGTCTAT 57.428 39.130 2.75 0.00 0.00 1.98
4312 6688 6.682423 TCCAAATTACTCGTCGTGTCTATA 57.318 37.500 2.75 0.00 0.00 1.31
4313 6689 7.087409 TCCAAATTACTCGTCGTGTCTATAA 57.913 36.000 2.75 0.00 0.00 0.98
4314 6690 7.537715 TCCAAATTACTCGTCGTGTCTATAAA 58.462 34.615 2.75 0.00 0.00 1.40
4315 6691 8.192774 TCCAAATTACTCGTCGTGTCTATAAAT 58.807 33.333 2.75 0.00 0.00 1.40
4316 6692 8.814235 CCAAATTACTCGTCGTGTCTATAAATT 58.186 33.333 2.75 1.87 0.00 1.82
4322 6698 8.976986 ACTCGTCGTGTCTATAAATTTTAGTT 57.023 30.769 0.00 0.00 0.00 2.24
4323 6699 9.070149 ACTCGTCGTGTCTATAAATTTTAGTTC 57.930 33.333 0.00 0.00 0.00 3.01
4324 6700 8.969121 TCGTCGTGTCTATAAATTTTAGTTCA 57.031 30.769 0.00 1.51 0.00 3.18
4325 6701 9.409312 TCGTCGTGTCTATAAATTTTAGTTCAA 57.591 29.630 0.00 0.00 0.00 2.69
4345 6721 8.076178 AGTTCAAATCTTCCAAATTACTTGTCG 58.924 33.333 0.00 0.00 32.65 4.35
4346 6722 7.504924 TCAAATCTTCCAAATTACTTGTCGT 57.495 32.000 0.00 0.00 32.65 4.34
4347 6723 7.359595 TCAAATCTTCCAAATTACTTGTCGTG 58.640 34.615 0.00 0.00 32.65 4.35
4348 6724 5.880054 ATCTTCCAAATTACTTGTCGTGG 57.120 39.130 0.00 0.00 32.65 4.94
4349 6725 4.710324 TCTTCCAAATTACTTGTCGTGGT 58.290 39.130 0.00 0.00 32.65 4.16
4350 6726 5.127491 TCTTCCAAATTACTTGTCGTGGTT 58.873 37.500 0.00 0.00 32.65 3.67
4351 6727 5.591067 TCTTCCAAATTACTTGTCGTGGTTT 59.409 36.000 0.00 0.00 32.65 3.27
4352 6728 5.838531 TCCAAATTACTTGTCGTGGTTTT 57.161 34.783 0.00 0.00 32.65 2.43
4353 6729 6.939132 TCCAAATTACTTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 32.65 1.52
4354 6730 6.961576 TCCAAATTACTTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 32.65 1.85
4355 6731 6.543100 TCCAAATTACTTGTCGTGGTTTTAGT 59.457 34.615 0.00 0.00 32.65 2.24
4356 6732 7.067251 TCCAAATTACTTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 32.65 2.24
4357 6733 7.377662 CCAAATTACTTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 32.65 3.01
4358 6734 7.556733 AATTACTTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
4359 6735 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
4360 6736 5.883503 ACTTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
4361 6737 6.445357 ACTTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
4362 6738 6.859017 ACTTGTCGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
4363 6739 7.317390 ACTTGTCGTGGTTTTAGTTCAAATTT 58.683 30.769 0.00 0.00 0.00 1.82
4364 6740 8.460428 ACTTGTCGTGGTTTTAGTTCAAATTTA 58.540 29.630 0.00 0.00 0.00 1.40
4365 6741 8.617761 TTGTCGTGGTTTTAGTTCAAATTTAC 57.382 30.769 0.00 0.00 0.00 2.01
4366 6742 7.759465 TGTCGTGGTTTTAGTTCAAATTTACA 58.241 30.769 0.00 0.00 0.00 2.41
4367 6743 7.911205 TGTCGTGGTTTTAGTTCAAATTTACAG 59.089 33.333 0.00 0.00 0.00 2.74
4368 6744 8.124199 GTCGTGGTTTTAGTTCAAATTTACAGA 58.876 33.333 0.00 0.00 0.00 3.41
4369 6745 8.124199 TCGTGGTTTTAGTTCAAATTTACAGAC 58.876 33.333 0.00 0.00 0.00 3.51
4370 6746 7.911205 CGTGGTTTTAGTTCAAATTTACAGACA 59.089 33.333 0.00 0.00 0.00 3.41
4371 6747 9.016623 GTGGTTTTAGTTCAAATTTACAGACAC 57.983 33.333 0.00 0.00 0.00 3.67
4372 6748 7.911205 TGGTTTTAGTTCAAATTTACAGACACG 59.089 33.333 0.00 0.00 0.00 4.49
4373 6749 8.124199 GGTTTTAGTTCAAATTTACAGACACGA 58.876 33.333 0.00 0.00 0.00 4.35
4374 6750 8.940924 GTTTTAGTTCAAATTTACAGACACGAC 58.059 33.333 0.00 0.00 0.00 4.34
4375 6751 5.324739 AGTTCAAATTTACAGACACGACG 57.675 39.130 0.00 0.00 0.00 5.12
4376 6752 5.045215 AGTTCAAATTTACAGACACGACGA 58.955 37.500 0.00 0.00 0.00 4.20
4377 6753 5.175126 AGTTCAAATTTACAGACACGACGAG 59.825 40.000 0.00 0.00 0.00 4.18
4378 6754 4.613944 TCAAATTTACAGACACGACGAGT 58.386 39.130 0.00 0.00 0.00 4.18
4379 6755 5.761003 TCAAATTTACAGACACGACGAGTA 58.239 37.500 0.00 0.00 0.00 2.59
4380 6756 6.207928 TCAAATTTACAGACACGACGAGTAA 58.792 36.000 0.00 0.11 0.00 2.24
4381 6757 6.864685 TCAAATTTACAGACACGACGAGTAAT 59.135 34.615 0.00 0.00 0.00 1.89
4382 6758 7.383029 TCAAATTTACAGACACGACGAGTAATT 59.617 33.333 0.00 0.00 0.00 1.40
4383 6759 7.647907 AATTTACAGACACGACGAGTAATTT 57.352 32.000 0.00 3.37 0.00 1.82
4384 6760 6.442487 TTTACAGACACGACGAGTAATTTG 57.558 37.500 0.00 0.00 0.00 2.32
4385 6761 3.314553 ACAGACACGACGAGTAATTTGG 58.685 45.455 0.00 0.00 0.00 3.28
4386 6762 3.005050 ACAGACACGACGAGTAATTTGGA 59.995 43.478 0.00 0.00 0.00 3.53
4387 6763 3.985279 CAGACACGACGAGTAATTTGGAA 59.015 43.478 0.00 0.00 0.00 3.53
4388 6764 3.985925 AGACACGACGAGTAATTTGGAAC 59.014 43.478 0.00 0.00 0.00 3.62
4389 6765 2.727798 ACACGACGAGTAATTTGGAACG 59.272 45.455 0.00 0.00 0.00 3.95
4390 6766 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
4391 6767 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
4392 6768 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4393 6769 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4394 6770 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4395 6771 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4396 6772 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4397 6773 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4398 6774 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4482 6858 3.368236 GTGTGACGGCTATCTTCTGTTTC 59.632 47.826 0.00 0.00 0.00 2.78
4483 6859 2.930682 GTGACGGCTATCTTCTGTTTCC 59.069 50.000 0.00 0.00 0.00 3.13
4506 6882 2.578786 CTTTGTTTTGTCCCCGTACCT 58.421 47.619 0.00 0.00 0.00 3.08
4531 6907 6.295249 TGTACTCCAAAACAATCAGATGTCA 58.705 36.000 0.00 0.00 31.81 3.58
4560 6936 9.617975 TTTTTGTTTGGCAAACTTGAAAATTAG 57.382 25.926 35.03 0.00 45.70 1.73
4561 6937 8.553459 TTTGTTTGGCAAACTTGAAAATTAGA 57.447 26.923 35.03 14.26 41.68 2.10
4564 6940 9.823647 TGTTTGGCAAACTTGAAAATTAGAATA 57.176 25.926 35.03 13.12 41.90 1.75
4601 7065 7.524294 TTGAGAAAAACTTGAAAATCAGCAC 57.476 32.000 0.00 0.00 0.00 4.40
4628 7097 5.163824 TGTTACTGAAGTATCGGAGTACACG 60.164 44.000 0.00 0.00 35.77 4.49
4637 7106 0.319405 CGGAGTACACGGAAAAGGGT 59.681 55.000 0.00 0.00 0.00 4.34
4643 7112 0.253610 ACACGGAAAAGGGTGTCACA 59.746 50.000 5.12 0.00 43.50 3.58
4666 7136 1.628846 ACTACTGAATGGGCCGAAAGT 59.371 47.619 0.00 2.50 0.00 2.66
4696 7166 5.518812 TGTTTCATTTTCTGTGATTCACCG 58.481 37.500 14.05 8.05 32.73 4.94
4847 7330 4.831155 AGTTGCATATGGATTTCAGATGGG 59.169 41.667 4.56 0.00 43.30 4.00
4880 7363 8.470805 GGTCCATGTACACCTTCTATCTATATG 58.529 40.741 0.00 0.00 0.00 1.78
5037 7521 1.648467 GACGCTTCTGGTTGGATGCC 61.648 60.000 0.00 0.00 34.30 4.40
5087 7571 4.695455 GCACATATGTGGCCGTAATTATCT 59.305 41.667 31.63 0.00 45.72 1.98
5113 7597 5.813157 GGACAGTTCTAGCTAAGGATGAAAC 59.187 44.000 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.324091 TTGGGACGGAGGGAGTACTC 60.324 60.000 14.87 14.87 36.76 2.59
30 31 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
31 32 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
32 33 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
33 34 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
34 35 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
35 36 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
36 37 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
37 38 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
38 39 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
39 40 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
40 41 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
41 42 5.701290 AGTCTAAGACAAGAATTTTGGGACG 59.299 40.000 0.00 0.00 34.60 4.79
42 43 7.878644 ACTAGTCTAAGACAAGAATTTTGGGAC 59.121 37.037 0.00 0.00 34.60 4.46
43 44 7.974504 ACTAGTCTAAGACAAGAATTTTGGGA 58.025 34.615 0.00 0.00 34.60 4.37
44 45 8.097662 AGACTAGTCTAAGACAAGAATTTTGGG 58.902 37.037 24.04 0.00 38.35 4.12
48 49 9.536510 ACCTAGACTAGTCTAAGACAAGAATTT 57.463 33.333 27.83 6.21 41.22 1.82
50 51 9.617523 GTACCTAGACTAGTCTAAGACAAGAAT 57.382 37.037 27.83 14.27 41.22 2.40
51 52 7.763528 CGTACCTAGACTAGTCTAAGACAAGAA 59.236 40.741 27.83 10.03 41.22 2.52
52 53 7.264221 CGTACCTAGACTAGTCTAAGACAAGA 58.736 42.308 27.83 10.66 41.22 3.02
53 54 6.479660 CCGTACCTAGACTAGTCTAAGACAAG 59.520 46.154 27.83 19.16 41.22 3.16
54 55 6.155221 TCCGTACCTAGACTAGTCTAAGACAA 59.845 42.308 27.83 15.84 41.22 3.18
55 56 5.658634 TCCGTACCTAGACTAGTCTAAGACA 59.341 44.000 27.83 15.72 41.22 3.41
56 57 6.155475 TCCGTACCTAGACTAGTCTAAGAC 57.845 45.833 27.83 23.15 41.22 3.01
57 58 6.326064 ACATCCGTACCTAGACTAGTCTAAGA 59.674 42.308 27.83 18.87 41.22 2.10
58 59 6.523840 ACATCCGTACCTAGACTAGTCTAAG 58.476 44.000 28.16 24.98 41.22 2.18
59 60 6.491714 ACATCCGTACCTAGACTAGTCTAA 57.508 41.667 28.16 14.74 41.22 2.10
60 61 7.673504 AGATACATCCGTACCTAGACTAGTCTA 59.326 40.741 27.03 27.03 40.93 2.59
61 62 6.497954 AGATACATCCGTACCTAGACTAGTCT 59.502 42.308 27.72 27.72 43.40 3.24
62 63 6.700352 AGATACATCCGTACCTAGACTAGTC 58.300 44.000 15.41 15.41 0.00 2.59
63 64 6.684897 AGATACATCCGTACCTAGACTAGT 57.315 41.667 8.68 0.00 0.00 2.57
66 67 8.824783 AGTATTAGATACATCCGTACCTAGACT 58.175 37.037 0.00 0.00 38.21 3.24
90 91 8.997621 ACGTATGTATCAAGTCATGTTTTAGT 57.002 30.769 0.00 0.00 0.00 2.24
120 121 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
121 122 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
122 123 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
123 124 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
124 125 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
125 126 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
126 127 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
127 128 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
128 129 4.156008 CCCGTCCCAAAATTCTTGTCTTAG 59.844 45.833 0.00 0.00 0.00 2.18
129 130 4.076394 CCCGTCCCAAAATTCTTGTCTTA 58.924 43.478 0.00 0.00 0.00 2.10
130 131 2.890945 CCCGTCCCAAAATTCTTGTCTT 59.109 45.455 0.00 0.00 0.00 3.01
131 132 2.514803 CCCGTCCCAAAATTCTTGTCT 58.485 47.619 0.00 0.00 0.00 3.41
132 133 1.544246 CCCCGTCCCAAAATTCTTGTC 59.456 52.381 0.00 0.00 0.00 3.18
133 134 1.627864 CCCCGTCCCAAAATTCTTGT 58.372 50.000 0.00 0.00 0.00 3.16
134 135 0.894835 CCCCCGTCCCAAAATTCTTG 59.105 55.000 0.00 0.00 0.00 3.02
135 136 0.781278 TCCCCCGTCCCAAAATTCTT 59.219 50.000 0.00 0.00 0.00 2.52
136 137 0.331616 CTCCCCCGTCCCAAAATTCT 59.668 55.000 0.00 0.00 0.00 2.40
137 138 0.039180 ACTCCCCCGTCCCAAAATTC 59.961 55.000 0.00 0.00 0.00 2.17
138 139 1.283905 CTACTCCCCCGTCCCAAAATT 59.716 52.381 0.00 0.00 0.00 1.82
139 140 0.916809 CTACTCCCCCGTCCCAAAAT 59.083 55.000 0.00 0.00 0.00 1.82
140 141 0.178897 TCTACTCCCCCGTCCCAAAA 60.179 55.000 0.00 0.00 0.00 2.44
141 142 0.178897 TTCTACTCCCCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
142 143 0.043637 ATTCTACTCCCCCGTCCCAA 59.956 55.000 0.00 0.00 0.00 4.12
143 144 0.043637 AATTCTACTCCCCCGTCCCA 59.956 55.000 0.00 0.00 0.00 4.37
144 145 1.140452 GAAATTCTACTCCCCCGTCCC 59.860 57.143 0.00 0.00 0.00 4.46
145 146 2.117051 AGAAATTCTACTCCCCCGTCC 58.883 52.381 0.00 0.00 0.00 4.79
146 147 2.500504 ACAGAAATTCTACTCCCCCGTC 59.499 50.000 0.00 0.00 0.00 4.79
147 148 2.547990 ACAGAAATTCTACTCCCCCGT 58.452 47.619 0.00 0.00 0.00 5.28
148 149 3.629142 AACAGAAATTCTACTCCCCCG 57.371 47.619 0.00 0.00 0.00 5.73
149 150 4.459337 CACAAACAGAAATTCTACTCCCCC 59.541 45.833 0.00 0.00 0.00 5.40
150 151 4.082733 GCACAAACAGAAATTCTACTCCCC 60.083 45.833 0.00 0.00 0.00 4.81
151 152 4.762251 AGCACAAACAGAAATTCTACTCCC 59.238 41.667 0.00 0.00 0.00 4.30
152 153 5.948992 AGCACAAACAGAAATTCTACTCC 57.051 39.130 0.00 0.00 0.00 3.85
376 391 6.238320 GGAGTAAGTTGAGCATGATAAAGCTG 60.238 42.308 0.00 0.00 42.04 4.24
417 432 3.627395 TCTCTATTGCCAACCGAACAT 57.373 42.857 0.00 0.00 0.00 2.71
454 469 6.975772 CCAGCTAGTTAATCTGAACACTACTC 59.024 42.308 0.00 0.00 0.00 2.59
518 537 0.746063 CTGTGGTGCTTGCCAAGAAA 59.254 50.000 9.04 0.00 40.68 2.52
608 628 3.489229 GCAATGGCCGTAGATTTTCTTCC 60.489 47.826 0.00 0.00 0.00 3.46
673 697 1.169034 GGGAGATGGCTCGGCAATTC 61.169 60.000 0.00 0.00 42.25 2.17
675 699 2.512896 GGGAGATGGCTCGGCAAT 59.487 61.111 0.00 0.00 42.25 3.56
692 720 3.423154 GGCAGTGGGAAAGCGACG 61.423 66.667 0.00 0.00 0.00 5.12
898 1989 4.412528 TCTCAGGTCACTACTCTATAGGCA 59.587 45.833 0.00 0.00 0.00 4.75
917 2008 0.318441 GCTATGGCGGTAGCATCTCA 59.682 55.000 14.52 0.00 45.03 3.27
934 2025 2.057137 CTCAGACCTCAGAGCTAGCT 57.943 55.000 19.45 19.45 0.00 3.32
961 2064 0.752658 CAGCCGGTGATGGACTATGA 59.247 55.000 1.90 0.00 0.00 2.15
1020 2126 1.741770 GAGAATGGTCACGCGCCTT 60.742 57.895 5.73 0.00 0.00 4.35
1028 2134 1.343478 GGAGGAGGAGGAGAATGGTCA 60.343 57.143 0.00 0.00 0.00 4.02
1030 2136 1.022903 AGGAGGAGGAGGAGAATGGT 58.977 55.000 0.00 0.00 0.00 3.55
1293 2414 0.391130 TGTTCATGCCGCCTAGTGAC 60.391 55.000 0.00 0.00 0.00 3.67
1296 2417 0.833287 AGATGTTCATGCCGCCTAGT 59.167 50.000 0.00 0.00 0.00 2.57
1304 2425 1.442526 CGGGCCAGAGATGTTCATGC 61.443 60.000 4.39 0.00 0.00 4.06
1361 2482 6.070656 AGAAAATTTCTGGACATGTCAAGGA 58.929 36.000 26.65 18.24 38.91 3.36
1374 2495 3.822735 TCTGCCCTGTGAGAAAATTTCTG 59.177 43.478 13.55 0.00 40.87 3.02
1377 2498 4.706962 GGTATCTGCCCTGTGAGAAAATTT 59.293 41.667 0.00 0.00 0.00 1.82
1383 2504 1.043116 CGGGTATCTGCCCTGTGAGA 61.043 60.000 1.71 0.00 46.47 3.27
1401 2522 3.708220 GAGGTTGGAGAGCTCGGCG 62.708 68.421 8.37 0.00 42.45 6.46
1423 2544 3.622514 GTCGAGGACCTGGATGCT 58.377 61.111 9.67 0.00 0.00 3.79
1512 2633 2.501723 TGAGAGGTGGTTATCCTTGAGC 59.498 50.000 0.00 0.00 35.20 4.26
1527 2648 0.540830 CCGGGATAGGACCTGAGAGG 60.541 65.000 3.53 0.00 42.49 3.69
1536 2657 0.191064 AGAGAATGGCCGGGATAGGA 59.809 55.000 2.18 0.00 0.00 2.94
1622 2743 1.874345 AATGTTCTCCGAGGCGTCGT 61.874 55.000 25.31 4.12 45.30 4.34
1623 2744 1.140407 GAATGTTCTCCGAGGCGTCG 61.140 60.000 21.30 21.30 46.39 5.12
1626 2747 1.002366 CTTGAATGTTCTCCGAGGCG 58.998 55.000 0.00 0.00 0.00 5.52
1643 2764 3.544698 TGGAGTAGAGGTTGAGGACTT 57.455 47.619 0.00 0.00 0.00 3.01
1644 2765 3.166679 GTTGGAGTAGAGGTTGAGGACT 58.833 50.000 0.00 0.00 0.00 3.85
1647 2768 2.234908 CCTGTTGGAGTAGAGGTTGAGG 59.765 54.545 0.00 0.00 34.57 3.86
1679 2800 2.358737 CAAGCCACCGTGGGAGTC 60.359 66.667 19.41 2.26 38.19 3.36
1698 2819 3.310774 GCAGGTACAGATATGTGCAGTTG 59.689 47.826 10.75 6.72 0.00 3.16
1707 2828 3.326006 CCACATCCAGCAGGTACAGATAT 59.674 47.826 0.00 0.00 35.89 1.63
1717 2838 0.325933 TTGTCCTCCACATCCAGCAG 59.674 55.000 0.00 0.00 33.90 4.24
1763 2884 0.816825 CTGCTTGCCCGCTATGATGT 60.817 55.000 0.00 0.00 0.00 3.06
1783 2904 4.702131 GGACAAATGCAGGTACTTGAGATT 59.298 41.667 9.51 3.25 34.60 2.40
1785 2906 3.072330 TGGACAAATGCAGGTACTTGAGA 59.928 43.478 9.51 0.00 34.60 3.27
1813 2934 2.432628 GTGGCTCGAGAACCGGTG 60.433 66.667 18.75 0.00 39.14 4.94
1968 4037 0.471780 TGAGCTCCAGGTTGAGGTGA 60.472 55.000 12.15 0.00 42.81 4.02
2040 4109 2.746362 GTTGCTTGAGAGGTTCATCAGG 59.254 50.000 0.00 0.00 35.27 3.86
2109 4178 3.071206 GACAGGGAGAGCCGCTCA 61.071 66.667 22.29 0.00 45.81 4.26
2135 4204 2.746375 GGGATCATGCCCGTCAGGT 61.746 63.158 0.00 0.00 38.58 4.00
2172 4241 4.008933 AGCTCGCCGAGGCTTGTT 62.009 61.111 16.95 0.00 39.32 2.83
2274 4347 1.455217 CGGTATCTCCCCGGACAGT 60.455 63.158 0.73 0.00 41.78 3.55
2446 4527 4.291047 CACCTGTTGCATCTCGCT 57.709 55.556 0.00 0.00 43.06 4.93
2468 4549 2.054021 TGTTCCAGGACAGGTCAATCA 58.946 47.619 1.41 0.00 0.00 2.57
2527 4608 2.757917 GAGGTCCTCCAGCTCGCT 60.758 66.667 7.78 0.00 39.82 4.93
2626 4707 1.592223 CTCCGGTCAGGGAGTTGTC 59.408 63.158 0.00 0.00 46.97 3.18
2682 4763 3.551551 GTTGTACGACAGGTTGAAATGC 58.448 45.455 8.46 0.00 0.00 3.56
2790 4872 2.281070 CAGTTGCGCCTCACCACT 60.281 61.111 4.18 0.00 0.00 4.00
2829 4911 1.094785 CCAAATACTTGCGGGACTGG 58.905 55.000 0.00 0.00 0.00 4.00
2838 4920 5.878332 TGCACATCACTACCAAATACTTG 57.122 39.130 0.00 0.00 0.00 3.16
2850 4932 2.110967 GGCGCAGATGCACATCACT 61.111 57.895 10.83 0.00 42.21 3.41
2941 5023 1.003839 TGAACATGTCCTCCCGCAC 60.004 57.895 0.00 0.00 0.00 5.34
3005 5087 4.077184 GGTGTGTGATCCGCGGGA 62.077 66.667 27.83 12.89 35.55 5.14
3039 5121 0.668706 CTGCACTGAACTCCTCCGTG 60.669 60.000 0.00 0.00 41.03 4.94
3042 5124 0.036858 GGTCTGCACTGAACTCCTCC 60.037 60.000 0.00 0.00 0.00 4.30
3066 5148 2.992689 TAGCTGCCCGTTCCGACA 60.993 61.111 0.00 0.00 0.00 4.35
3420 5731 1.576421 GTTGCTTGGCTTGAGGTCG 59.424 57.895 0.00 0.00 0.00 4.79
3528 5839 4.451150 GTGGAGGCGCCGACATCA 62.451 66.667 25.08 15.61 40.66 3.07
3573 5884 3.067320 GGTACGTACCTGGAGGAATGTAC 59.933 52.174 32.93 5.40 43.10 2.90
3589 5900 2.158871 AGTGTGTGGTTTCATGGTACGT 60.159 45.455 0.00 0.00 0.00 3.57
3590 5901 2.223144 CAGTGTGTGGTTTCATGGTACG 59.777 50.000 0.00 0.00 0.00 3.67
3591 5902 2.031157 GCAGTGTGTGGTTTCATGGTAC 60.031 50.000 0.00 0.00 0.00 3.34
3592 5903 2.158682 AGCAGTGTGTGGTTTCATGGTA 60.159 45.455 0.00 0.00 30.62 3.25
3593 5904 1.032014 GCAGTGTGTGGTTTCATGGT 58.968 50.000 0.00 0.00 0.00 3.55
3594 5905 1.321474 AGCAGTGTGTGGTTTCATGG 58.679 50.000 0.00 0.00 30.62 3.66
3595 5906 4.539870 CTTTAGCAGTGTGTGGTTTCATG 58.460 43.478 0.00 0.00 38.14 3.07
3596 5907 3.004734 GCTTTAGCAGTGTGTGGTTTCAT 59.995 43.478 0.00 0.00 41.59 2.57
3597 5908 2.357637 GCTTTAGCAGTGTGTGGTTTCA 59.642 45.455 0.00 0.00 41.59 2.69
3598 5909 2.618709 AGCTTTAGCAGTGTGTGGTTTC 59.381 45.455 4.33 0.00 45.16 2.78
3627 5949 0.739561 ACTCGTCACCGGAATAGCTC 59.260 55.000 9.46 0.00 33.95 4.09
3642 5964 5.105716 TCAGAACTAAGAATCTGGGAACTCG 60.106 44.000 3.23 0.00 42.62 4.18
3667 5989 6.055588 CCAAGAAGTAAGAACCACTCAGAAA 58.944 40.000 0.00 0.00 0.00 2.52
3692 6014 4.970711 AGCCATACTCTTCAGATCATTGG 58.029 43.478 0.00 0.00 0.00 3.16
3765 6087 3.576861 TCCTCGTTACCATCTCCATCAT 58.423 45.455 0.00 0.00 0.00 2.45
4025 6347 4.069232 CGCTTGAGCCGGTCCAGA 62.069 66.667 1.90 0.00 37.91 3.86
4116 6438 4.559704 GCTACCGCTAGCTAGTCATCAATT 60.560 45.833 21.62 1.66 42.11 2.32
4187 6518 3.192422 CCCTTCACAACCGCATAAATTCA 59.808 43.478 0.00 0.00 0.00 2.57
4279 6655 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4280 6656 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4281 6657 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4282 6658 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4283 6659 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4284 6660 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
4285 6661 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
4286 6662 2.727798 ACACGACGAGTAATTTGGAACG 59.272 45.455 0.00 0.00 0.00 3.95
4287 6663 3.985925 AGACACGACGAGTAATTTGGAAC 59.014 43.478 0.00 0.00 0.00 3.62
4288 6664 4.247267 AGACACGACGAGTAATTTGGAA 57.753 40.909 0.00 0.00 0.00 3.53
4289 6665 3.928727 AGACACGACGAGTAATTTGGA 57.071 42.857 0.00 0.00 0.00 3.53
4290 6666 7.745022 TTTATAGACACGACGAGTAATTTGG 57.255 36.000 0.00 0.00 0.00 3.28
4297 6673 8.976986 AACTAAAATTTATAGACACGACGAGT 57.023 30.769 0.00 0.00 0.00 4.18
4298 6674 9.069078 TGAACTAAAATTTATAGACACGACGAG 57.931 33.333 0.00 0.00 0.00 4.18
4299 6675 8.969121 TGAACTAAAATTTATAGACACGACGA 57.031 30.769 0.00 0.00 0.00 4.20
4319 6695 8.076178 CGACAAGTAATTTGGAAGATTTGAACT 58.924 33.333 0.00 0.00 41.25 3.01
4320 6696 7.860872 ACGACAAGTAATTTGGAAGATTTGAAC 59.139 33.333 0.00 0.00 41.25 3.18
4321 6697 7.860373 CACGACAAGTAATTTGGAAGATTTGAA 59.140 33.333 0.00 0.00 41.25 2.69
4322 6698 7.359595 CACGACAAGTAATTTGGAAGATTTGA 58.640 34.615 0.00 0.00 41.25 2.69
4323 6699 6.582295 CCACGACAAGTAATTTGGAAGATTTG 59.418 38.462 0.00 0.00 41.25 2.32
4324 6700 6.264518 ACCACGACAAGTAATTTGGAAGATTT 59.735 34.615 0.00 0.00 41.25 2.17
4325 6701 5.768164 ACCACGACAAGTAATTTGGAAGATT 59.232 36.000 0.00 0.00 41.25 2.40
4326 6702 5.313712 ACCACGACAAGTAATTTGGAAGAT 58.686 37.500 0.00 0.00 41.25 2.40
4327 6703 4.710324 ACCACGACAAGTAATTTGGAAGA 58.290 39.130 0.00 0.00 41.25 2.87
4328 6704 5.432885 AACCACGACAAGTAATTTGGAAG 57.567 39.130 0.00 0.00 41.25 3.46
4329 6705 5.838531 AAACCACGACAAGTAATTTGGAA 57.161 34.783 0.00 0.00 41.25 3.53
4330 6706 5.838531 AAAACCACGACAAGTAATTTGGA 57.161 34.783 0.00 0.00 41.25 3.53
4331 6707 6.731164 ACTAAAACCACGACAAGTAATTTGG 58.269 36.000 0.00 0.00 41.25 3.28
4332 6708 7.911205 TGAACTAAAACCACGACAAGTAATTTG 59.089 33.333 0.00 0.00 42.68 2.32
4333 6709 7.987649 TGAACTAAAACCACGACAAGTAATTT 58.012 30.769 0.00 0.00 0.00 1.82
4334 6710 7.556733 TGAACTAAAACCACGACAAGTAATT 57.443 32.000 0.00 0.00 0.00 1.40
4335 6711 7.556733 TTGAACTAAAACCACGACAAGTAAT 57.443 32.000 0.00 0.00 0.00 1.89
4336 6712 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
4337 6713 6.981762 TTTGAACTAAAACCACGACAAGTA 57.018 33.333 0.00 0.00 0.00 2.24
4338 6714 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
4339 6715 7.749539 AAATTTGAACTAAAACCACGACAAG 57.250 32.000 0.00 0.00 0.00 3.16
4340 6716 8.242053 TGTAAATTTGAACTAAAACCACGACAA 58.758 29.630 0.00 0.00 0.00 3.18
4341 6717 7.759465 TGTAAATTTGAACTAAAACCACGACA 58.241 30.769 0.00 0.00 0.00 4.35
4342 6718 8.124199 TCTGTAAATTTGAACTAAAACCACGAC 58.876 33.333 0.00 0.00 0.00 4.34
4343 6719 8.124199 GTCTGTAAATTTGAACTAAAACCACGA 58.876 33.333 0.00 0.00 0.00 4.35
4344 6720 7.911205 TGTCTGTAAATTTGAACTAAAACCACG 59.089 33.333 0.00 0.00 0.00 4.94
4345 6721 9.016623 GTGTCTGTAAATTTGAACTAAAACCAC 57.983 33.333 0.00 0.00 0.00 4.16
4346 6722 7.911205 CGTGTCTGTAAATTTGAACTAAAACCA 59.089 33.333 0.00 0.00 0.00 3.67
4347 6723 8.124199 TCGTGTCTGTAAATTTGAACTAAAACC 58.876 33.333 0.00 0.00 0.00 3.27
4348 6724 8.940924 GTCGTGTCTGTAAATTTGAACTAAAAC 58.059 33.333 0.00 0.00 0.00 2.43
4349 6725 7.847078 CGTCGTGTCTGTAAATTTGAACTAAAA 59.153 33.333 0.00 0.00 0.00 1.52
4350 6726 7.222417 TCGTCGTGTCTGTAAATTTGAACTAAA 59.778 33.333 0.00 0.00 0.00 1.85
4351 6727 6.696583 TCGTCGTGTCTGTAAATTTGAACTAA 59.303 34.615 0.00 0.00 0.00 2.24
4352 6728 6.207928 TCGTCGTGTCTGTAAATTTGAACTA 58.792 36.000 0.00 0.00 0.00 2.24
4353 6729 5.045215 TCGTCGTGTCTGTAAATTTGAACT 58.955 37.500 0.00 0.00 0.00 3.01
4354 6730 5.051240 ACTCGTCGTGTCTGTAAATTTGAAC 60.051 40.000 0.00 0.00 0.00 3.18
4355 6731 5.045215 ACTCGTCGTGTCTGTAAATTTGAA 58.955 37.500 0.00 0.00 0.00 2.69
4356 6732 4.613944 ACTCGTCGTGTCTGTAAATTTGA 58.386 39.130 0.00 0.00 0.00 2.69
4357 6733 4.966850 ACTCGTCGTGTCTGTAAATTTG 57.033 40.909 0.00 0.00 0.00 2.32
4358 6734 7.647907 AATTACTCGTCGTGTCTGTAAATTT 57.352 32.000 2.75 0.00 0.00 1.82
4359 6735 7.359765 CCAAATTACTCGTCGTGTCTGTAAATT 60.360 37.037 2.75 1.87 0.00 1.82
4360 6736 6.090358 CCAAATTACTCGTCGTGTCTGTAAAT 59.910 38.462 2.75 0.00 0.00 1.40
4361 6737 5.403166 CCAAATTACTCGTCGTGTCTGTAAA 59.597 40.000 2.75 0.00 0.00 2.01
4362 6738 4.919168 CCAAATTACTCGTCGTGTCTGTAA 59.081 41.667 2.75 2.49 0.00 2.41
4363 6739 4.216042 TCCAAATTACTCGTCGTGTCTGTA 59.784 41.667 2.75 0.00 0.00 2.74
4364 6740 3.005050 TCCAAATTACTCGTCGTGTCTGT 59.995 43.478 2.75 0.00 0.00 3.41
4365 6741 3.571571 TCCAAATTACTCGTCGTGTCTG 58.428 45.455 2.75 0.00 0.00 3.51
4366 6742 3.928727 TCCAAATTACTCGTCGTGTCT 57.071 42.857 2.75 0.00 0.00 3.41
4367 6743 3.181546 CGTTCCAAATTACTCGTCGTGTC 60.182 47.826 2.75 0.00 0.00 3.67
4368 6744 2.727798 CGTTCCAAATTACTCGTCGTGT 59.272 45.455 5.19 5.19 0.00 4.49
4369 6745 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
4370 6746 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
4371 6747 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4372 6748 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4373 6749 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4374 6750 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4375 6751 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4376 6752 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4377 6753 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4378 6754 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
4379 6755 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
4380 6756 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
4381 6757 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4382 6758 2.225091 TGTACTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
4383 6759 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
4384 6760 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
4385 6761 3.819902 CCTATGTACTACTCCCTCCGTTC 59.180 52.174 0.00 0.00 0.00 3.95
4386 6762 3.830121 CCTATGTACTACTCCCTCCGTT 58.170 50.000 0.00 0.00 0.00 4.44
4387 6763 2.488710 GCCTATGTACTACTCCCTCCGT 60.489 54.545 0.00 0.00 0.00 4.69
4388 6764 2.161030 GCCTATGTACTACTCCCTCCG 58.839 57.143 0.00 0.00 0.00 4.63
4389 6765 3.529216 AGCCTATGTACTACTCCCTCC 57.471 52.381 0.00 0.00 0.00 4.30
4390 6766 4.471548 TCAAGCCTATGTACTACTCCCTC 58.528 47.826 0.00 0.00 0.00 4.30
4391 6767 4.537945 TCAAGCCTATGTACTACTCCCT 57.462 45.455 0.00 0.00 0.00 4.20
4392 6768 5.810080 AATCAAGCCTATGTACTACTCCC 57.190 43.478 0.00 0.00 0.00 4.30
4482 6858 1.468506 CGGGGACAAAACAAAGGGGG 61.469 60.000 0.00 0.00 0.00 5.40
4483 6859 0.757561 ACGGGGACAAAACAAAGGGG 60.758 55.000 0.00 0.00 0.00 4.79
4506 6882 6.770303 TGACATCTGATTGTTTTGGAGTACAA 59.230 34.615 0.00 0.00 38.50 2.41
4595 7059 6.459710 CCGATACTTCAGTAACATAGTGCTGA 60.460 42.308 0.00 0.00 36.35 4.26
4596 7060 5.687730 CCGATACTTCAGTAACATAGTGCTG 59.312 44.000 0.00 0.00 33.76 4.41
4597 7061 5.593095 TCCGATACTTCAGTAACATAGTGCT 59.407 40.000 0.00 0.00 33.76 4.40
4598 7062 5.828747 TCCGATACTTCAGTAACATAGTGC 58.171 41.667 0.00 0.00 33.76 4.40
4599 7063 7.028926 ACTCCGATACTTCAGTAACATAGTG 57.971 40.000 0.00 0.00 33.76 2.74
4601 7065 8.068977 GTGTACTCCGATACTTCAGTAACATAG 58.931 40.741 0.00 0.00 33.76 2.23
4628 7097 0.668535 GTGCTGTGACACCCTTTTCC 59.331 55.000 2.45 0.00 34.35 3.13
4637 7106 2.289631 CCCATTCAGTAGTGCTGTGACA 60.290 50.000 8.17 0.00 45.23 3.58
4643 7112 1.221840 CGGCCCATTCAGTAGTGCT 59.778 57.895 0.00 0.00 0.00 4.40
4659 7129 9.030301 AGAAAATGAAACAATTTGTACTTTCGG 57.970 29.630 1.76 0.00 30.21 4.30
4743 7214 1.334869 CTTCGTGCTCAAAAGGCTGTT 59.665 47.619 0.00 0.00 0.00 3.16
4847 7330 3.751518 AGGTGTACATGGACCAAACTTC 58.248 45.455 5.38 0.00 34.36 3.01
4880 7363 7.585573 CGCTCGGTTTATATATCCTTCGTATAC 59.414 40.741 0.00 0.00 0.00 1.47
4885 7368 4.557690 CACGCTCGGTTTATATATCCTTCG 59.442 45.833 0.00 0.00 0.00 3.79
4888 7371 3.672511 CGCACGCTCGGTTTATATATCCT 60.673 47.826 0.00 0.00 0.00 3.24
4987 7471 2.162408 GCATTAAGAGCACAACAGGGAC 59.838 50.000 0.00 0.00 0.00 4.46
5087 7571 5.023452 TCATCCTTAGCTAGAACTGTCCAA 58.977 41.667 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.