Multiple sequence alignment - TraesCS5D01G229300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G229300 chr5D 100.000 2867 0 0 1 2867 336382308 336379442 0.000000e+00 5295.0
1 TraesCS5D01G229300 chr5D 83.547 1951 188 73 278 2180 336337943 336339808 0.000000e+00 1701.0
2 TraesCS5D01G229300 chr5D 89.104 1340 88 31 856 2150 336314818 336316144 0.000000e+00 1613.0
3 TraesCS5D01G229300 chr5D 84.597 1636 139 62 287 1866 336240454 336238876 0.000000e+00 1520.0
4 TraesCS5D01G229300 chr5D 90.500 600 35 14 1571 2150 336257245 336256648 0.000000e+00 773.0
5 TraesCS5D01G229300 chr5D 84.816 461 27 13 278 723 336258523 336258091 9.500000e-115 424.0
6 TraesCS5D01G229300 chr5D 84.816 461 27 13 278 723 336314285 336314717 9.500000e-115 424.0
7 TraesCS5D01G229300 chr5D 81.250 160 15 5 2683 2828 336256245 336256087 6.490000e-22 115.0
8 TraesCS5D01G229300 chr5D 79.618 157 17 5 2683 2825 336316548 336316703 6.540000e-17 99.0
9 TraesCS5D01G229300 chr5A 94.204 1225 54 12 856 2077 437412797 437411587 0.000000e+00 1853.0
10 TraesCS5D01G229300 chr5A 88.731 1198 94 29 856 2026 437393296 437392113 0.000000e+00 1426.0
11 TraesCS5D01G229300 chr5A 91.176 1020 54 12 922 1913 437400044 437399033 0.000000e+00 1352.0
12 TraesCS5D01G229300 chr5A 90.275 473 38 6 2074 2543 437411331 437410864 1.890000e-171 612.0
13 TraesCS5D01G229300 chr5A 84.848 462 25 14 278 723 437393829 437393397 9.500000e-115 424.0
14 TraesCS5D01G229300 chr5A 83.040 454 26 21 291 723 437413300 437412877 5.840000e-97 364.0
15 TraesCS5D01G229300 chr5A 76.326 528 50 43 298 769 437400668 437400160 2.240000e-51 213.0
16 TraesCS5D01G229300 chr5A 94.805 77 4 0 2791 2867 437410860 437410784 1.400000e-23 121.0
17 TraesCS5D01G229300 chr5A 97.436 39 1 0 2829 2867 127983200 127983238 1.840000e-07 67.6
18 TraesCS5D01G229300 chr5A 95.122 41 1 1 2828 2867 534663281 534663241 2.380000e-06 63.9
19 TraesCS5D01G229300 chr5B 90.352 1306 85 13 856 2121 394628202 394626898 0.000000e+00 1676.0
20 TraesCS5D01G229300 chr5B 88.815 1198 92 20 856 2026 394572543 394571361 0.000000e+00 1432.0
21 TraesCS5D01G229300 chr5B 91.242 1039 54 15 960 1961 394581091 394580053 0.000000e+00 1380.0
22 TraesCS5D01G229300 chr5B 87.344 719 58 17 77 769 394628976 394628265 0.000000e+00 793.0
23 TraesCS5D01G229300 chr5B 80.977 778 82 19 2105 2862 394626850 394626119 8.970000e-155 556.0
24 TraesCS5D01G229300 chr5B 76.952 538 51 32 287 769 394581764 394581245 3.690000e-59 239.0
25 TraesCS5D01G229300 chr5B 81.271 299 29 14 278 565 394573020 394572738 1.730000e-52 217.0
26 TraesCS5D01G229300 chr5B 89.032 155 9 4 620 770 394572718 394572568 4.880000e-43 185.0
27 TraesCS5D01G229300 chr7A 81.140 228 35 5 2475 2701 648754472 648754252 2.940000e-40 176.0
28 TraesCS5D01G229300 chr3D 75.562 356 58 20 2279 2628 597648207 597647875 6.400000e-32 148.0
29 TraesCS5D01G229300 chr3D 74.860 358 67 18 2279 2628 442141333 442141675 1.070000e-29 141.0
30 TraesCS5D01G229300 chr1B 80.925 173 22 5 2463 2635 633270393 633270554 3.000000e-25 126.0
31 TraesCS5D01G229300 chr4A 81.651 109 15 4 2168 2273 715804751 715804645 5.090000e-13 86.1
32 TraesCS5D01G229300 chr4A 92.683 41 2 1 2827 2867 624730798 624730759 1.110000e-04 58.4
33 TraesCS5D01G229300 chr1A 97.436 39 1 0 2829 2867 508162996 508163034 1.840000e-07 67.6
34 TraesCS5D01G229300 chr2D 93.182 44 2 1 2824 2867 533083496 533083538 2.380000e-06 63.9
35 TraesCS5D01G229300 chr6A 97.222 36 1 0 2829 2864 23963787 23963822 8.580000e-06 62.1
36 TraesCS5D01G229300 chr3B 89.362 47 3 2 2821 2867 421894591 421894547 1.110000e-04 58.4
37 TraesCS5D01G229300 chr3A 94.595 37 2 0 2831 2867 647470594 647470558 1.110000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G229300 chr5D 336379442 336382308 2866 True 5295.000000 5295 100.000000 1 2867 1 chr5D.!!$R2 2866
1 TraesCS5D01G229300 chr5D 336337943 336339808 1865 False 1701.000000 1701 83.547000 278 2180 1 chr5D.!!$F1 1902
2 TraesCS5D01G229300 chr5D 336238876 336240454 1578 True 1520.000000 1520 84.597000 287 1866 1 chr5D.!!$R1 1579
3 TraesCS5D01G229300 chr5D 336314285 336316703 2418 False 712.000000 1613 84.512667 278 2825 3 chr5D.!!$F2 2547
4 TraesCS5D01G229300 chr5D 336256087 336258523 2436 True 437.333333 773 85.522000 278 2828 3 chr5D.!!$R3 2550
5 TraesCS5D01G229300 chr5A 437392113 437393829 1716 True 925.000000 1426 86.789500 278 2026 2 chr5A.!!$R2 1748
6 TraesCS5D01G229300 chr5A 437399033 437400668 1635 True 782.500000 1352 83.751000 298 1913 2 chr5A.!!$R3 1615
7 TraesCS5D01G229300 chr5A 437410784 437413300 2516 True 737.500000 1853 90.581000 291 2867 4 chr5A.!!$R4 2576
8 TraesCS5D01G229300 chr5B 394626119 394628976 2857 True 1008.333333 1676 86.224333 77 2862 3 chr5B.!!$R3 2785
9 TraesCS5D01G229300 chr5B 394580053 394581764 1711 True 809.500000 1380 84.097000 287 1961 2 chr5B.!!$R2 1674
10 TraesCS5D01G229300 chr5B 394571361 394573020 1659 True 611.333333 1432 86.372667 278 2026 3 chr5B.!!$R1 1748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1040 0.037447 TTCGGGCATGAACATGGACA 59.963 50.0 15.15 0.0 39.16 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2337 3017 0.035739 GGCCCAAAGGACACGAGTAA 59.964 55.0 0.0 0.0 43.07 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.059287 AGGGATGATACGAGGGCTC 57.941 57.895 0.00 0.00 0.00 4.70
28 29 4.415332 GAGGGCTCGTGAACGCGA 62.415 66.667 15.93 9.92 39.60 5.87
29 30 4.719369 AGGGCTCGTGAACGCGAC 62.719 66.667 15.93 7.16 39.60 5.19
33 34 4.394078 CTCGTGAACGCGACCCGA 62.394 66.667 15.93 13.88 41.02 5.14
34 35 4.688419 TCGTGAACGCGACCCGAC 62.688 66.667 15.93 0.40 41.02 4.79
35 36 4.986587 CGTGAACGCGACCCGACA 62.987 66.667 15.93 0.03 41.02 4.35
36 37 3.400590 GTGAACGCGACCCGACAC 61.401 66.667 15.93 9.49 41.02 3.67
37 38 4.986587 TGAACGCGACCCGACACG 62.987 66.667 15.93 0.00 41.02 4.49
55 56 3.625897 CCCAGTGAGTCCGCCACA 61.626 66.667 0.00 0.00 37.01 4.17
56 57 2.665000 CCAGTGAGTCCGCCACAT 59.335 61.111 0.00 0.00 37.01 3.21
57 58 1.613317 CCCAGTGAGTCCGCCACATA 61.613 60.000 0.00 0.00 37.01 2.29
58 59 0.179100 CCAGTGAGTCCGCCACATAG 60.179 60.000 0.00 0.00 37.01 2.23
59 60 0.179100 CAGTGAGTCCGCCACATAGG 60.179 60.000 0.00 0.00 37.01 2.57
60 61 0.324368 AGTGAGTCCGCCACATAGGA 60.324 55.000 0.00 0.00 41.22 2.94
63 64 2.585247 GTCCGCCACATAGGACGC 60.585 66.667 0.00 0.00 46.08 5.19
64 65 3.845259 TCCGCCACATAGGACGCC 61.845 66.667 0.00 0.00 41.22 5.68
66 67 4.201679 CGCCACATAGGACGCCGA 62.202 66.667 0.00 0.00 41.22 5.54
67 68 2.585247 GCCACATAGGACGCCGAC 60.585 66.667 0.00 0.00 41.22 4.79
68 69 2.889617 CCACATAGGACGCCGACA 59.110 61.111 0.00 0.00 41.22 4.35
69 70 1.226974 CCACATAGGACGCCGACAG 60.227 63.158 0.00 0.00 41.22 3.51
70 71 1.878522 CACATAGGACGCCGACAGC 60.879 63.158 0.00 0.00 38.52 4.40
71 72 2.279517 CATAGGACGCCGACAGCC 60.280 66.667 0.00 0.00 38.78 4.85
72 73 2.442272 ATAGGACGCCGACAGCCT 60.442 61.111 0.00 0.00 38.78 4.58
73 74 1.152819 ATAGGACGCCGACAGCCTA 60.153 57.895 0.00 0.00 38.78 3.93
74 75 1.173444 ATAGGACGCCGACAGCCTAG 61.173 60.000 0.00 0.00 36.52 3.02
75 76 2.261430 TAGGACGCCGACAGCCTAGA 62.261 60.000 0.00 0.00 38.78 2.43
81 82 1.513158 CCGACAGCCTAGACCACTG 59.487 63.158 0.00 0.00 37.45 3.66
102 103 9.670719 CCACTGTTTCTCTTTCTTTATTCTTTC 57.329 33.333 0.00 0.00 0.00 2.62
121 122 7.938563 TCTTTCTTTTCTTTCTCTCTCTTCG 57.061 36.000 0.00 0.00 0.00 3.79
125 126 7.045126 TCTTTTCTTTCTCTCTCTTCGTCTT 57.955 36.000 0.00 0.00 0.00 3.01
128 129 6.582677 TTCTTTCTCTCTCTTCGTCTTCAT 57.417 37.500 0.00 0.00 0.00 2.57
133 134 6.522625 TCTCTCTCTTCGTCTTCATCAATT 57.477 37.500 0.00 0.00 0.00 2.32
149 150 3.669536 TCAATTACATGCAAGTGACCGA 58.330 40.909 4.73 0.00 28.29 4.69
160 167 4.629634 TGCAAGTGACCGAACATATAAGTG 59.370 41.667 0.00 0.00 0.00 3.16
167 174 8.041323 AGTGACCGAACATATAAGTGAGAAAAT 58.959 33.333 0.00 0.00 0.00 1.82
169 176 8.038351 TGACCGAACATATAAGTGAGAAAATGA 58.962 33.333 0.00 0.00 0.00 2.57
174 181 8.443953 AACATATAAGTGAGAAAATGAGGAGC 57.556 34.615 0.00 0.00 0.00 4.70
177 184 6.939132 ATAAGTGAGAAAATGAGGAGCATG 57.061 37.500 0.00 0.00 37.28 4.06
178 185 3.618351 AGTGAGAAAATGAGGAGCATGG 58.382 45.455 0.00 0.00 37.28 3.66
196 209 0.622136 GGGGACGGACAAATAAGGGT 59.378 55.000 0.00 0.00 0.00 4.34
198 211 2.555892 GGGGACGGACAAATAAGGGTTT 60.556 50.000 0.00 0.00 0.00 3.27
203 216 6.071221 GGGACGGACAAATAAGGGTTTAAAAT 60.071 38.462 0.00 0.00 0.00 1.82
205 218 6.693466 ACGGACAAATAAGGGTTTAAAATGG 58.307 36.000 0.00 0.00 0.00 3.16
213 226 2.817844 AGGGTTTAAAATGGACACGCTC 59.182 45.455 0.00 0.00 0.00 5.03
214 227 2.094906 GGGTTTAAAATGGACACGCTCC 60.095 50.000 0.00 0.00 39.97 4.70
223 236 1.729838 GACACGCTCCGACACTGAC 60.730 63.158 0.00 0.00 0.00 3.51
225 238 4.039357 ACGCTCCGACACTGACCG 62.039 66.667 0.00 0.00 0.00 4.79
230 243 4.082523 CCGACACTGACCGGGCAT 62.083 66.667 12.52 0.00 41.89 4.40
253 276 4.389374 GTCTGAGGGACAAGATTTGTTCA 58.611 43.478 2.92 0.00 45.52 3.18
255 278 6.173339 GTCTGAGGGACAAGATTTGTTCATA 58.827 40.000 2.92 0.00 45.52 2.15
267 290 6.893583 AGATTTGTTCATAGTGGCTGTAGAT 58.106 36.000 0.00 0.00 0.00 1.98
269 292 3.797039 TGTTCATAGTGGCTGTAGATGC 58.203 45.455 0.00 0.00 0.00 3.91
272 295 2.294512 TCATAGTGGCTGTAGATGCTCG 59.705 50.000 0.00 0.00 0.00 5.03
282 305 0.099968 TAGATGCTCGTACGTGTGCC 59.900 55.000 16.05 6.09 0.00 5.01
400 444 5.887214 TGGTCTCAGGCTGCTAATTATTA 57.113 39.130 10.34 0.00 0.00 0.98
401 445 5.611374 TGGTCTCAGGCTGCTAATTATTAC 58.389 41.667 10.34 0.00 0.00 1.89
402 446 5.366768 TGGTCTCAGGCTGCTAATTATTACT 59.633 40.000 10.34 0.00 0.00 2.24
504 555 3.013921 ACGGCTCTTTGAGTTGACAAAA 58.986 40.909 0.00 0.00 38.90 2.44
511 562 6.428159 GCTCTTTGAGTTGACAAAATCTCCTA 59.572 38.462 0.00 0.00 38.90 2.94
530 608 6.065976 TCCTACACAAAACCATGATCAGAT 57.934 37.500 0.09 0.00 0.00 2.90
547 642 6.438425 TGATCAGATGGCTGCTGACTAATATA 59.562 38.462 11.10 0.00 44.39 0.86
548 643 6.864151 TCAGATGGCTGCTGACTAATATAT 57.136 37.500 0.00 0.00 42.01 0.86
549 644 6.637657 TCAGATGGCTGCTGACTAATATATG 58.362 40.000 0.00 0.00 42.01 1.78
551 646 3.942829 TGGCTGCTGACTAATATATGGC 58.057 45.455 0.00 0.00 0.00 4.40
552 647 2.932614 GGCTGCTGACTAATATATGGCG 59.067 50.000 0.00 0.00 0.00 5.69
553 648 3.368427 GGCTGCTGACTAATATATGGCGA 60.368 47.826 0.00 0.00 0.00 5.54
626 754 0.856641 TCGTACGTGCTGCAAAGTTC 59.143 50.000 16.05 10.53 0.00 3.01
643 771 1.489881 TTCGTCGCATGCATGATCGG 61.490 55.000 30.64 15.22 0.00 4.18
685 828 1.670406 CTAGGCTGCCGATGGATGC 60.670 63.158 13.96 0.00 0.00 3.91
750 914 1.818674 CCATCCAAAAAGAAGTCGGGG 59.181 52.381 0.00 0.00 0.00 5.73
769 933 1.136147 CTCTCCAAAGCGTGCATGC 59.864 57.895 23.58 23.58 0.00 4.06
771 935 1.443194 CTCCAAAGCGTGCATGCAC 60.443 57.895 35.76 35.76 43.01 4.57
786 963 2.011540 TGCACGTGTATTCGCCATTA 57.988 45.000 18.38 0.00 0.00 1.90
787 964 1.661617 TGCACGTGTATTCGCCATTAC 59.338 47.619 18.38 0.00 0.00 1.89
788 965 1.331680 GCACGTGTATTCGCCATTACG 60.332 52.381 18.38 0.00 37.54 3.18
789 966 1.256895 CACGTGTATTCGCCATTACGG 59.743 52.381 7.58 0.00 36.01 4.02
790 967 1.134753 ACGTGTATTCGCCATTACGGA 59.865 47.619 0.00 0.00 36.56 4.69
791 968 1.784856 CGTGTATTCGCCATTACGGAG 59.215 52.381 0.00 0.00 36.56 4.63
792 969 2.132762 GTGTATTCGCCATTACGGAGG 58.867 52.381 0.00 0.00 36.56 4.30
793 970 2.033372 TGTATTCGCCATTACGGAGGA 58.967 47.619 0.00 0.00 36.56 3.71
810 999 0.252558 GGAGTACTCCCCTTGTCCCA 60.253 60.000 28.87 0.00 43.94 4.37
812 1001 2.359994 GGAGTACTCCCCTTGTCCCATA 60.360 54.545 28.87 0.00 43.94 2.74
814 1003 2.045326 AGTACTCCCCTTGTCCCATACA 59.955 50.000 0.00 0.00 35.88 2.29
816 1005 1.846439 ACTCCCCTTGTCCCATACATG 59.154 52.381 0.00 0.00 38.10 3.21
818 1007 0.258484 CCCCTTGTCCCATACATGCA 59.742 55.000 0.00 0.00 38.10 3.96
819 1008 1.392589 CCCTTGTCCCATACATGCAC 58.607 55.000 0.00 0.00 38.10 4.57
820 1009 1.340893 CCCTTGTCCCATACATGCACA 60.341 52.381 0.00 0.00 38.10 4.57
821 1010 2.658285 CCTTGTCCCATACATGCACAT 58.342 47.619 0.00 0.00 38.10 3.21
833 1022 3.358707 CATGCACATGTATTCGCCATT 57.641 42.857 0.00 0.00 34.23 3.16
834 1023 3.302555 CATGCACATGTATTCGCCATTC 58.697 45.455 0.00 0.00 34.23 2.67
835 1024 1.330213 TGCACATGTATTCGCCATTCG 59.670 47.619 0.00 0.00 40.15 3.34
836 1025 1.334059 GCACATGTATTCGCCATTCGG 60.334 52.381 0.00 0.00 39.05 4.30
837 1026 1.264020 CACATGTATTCGCCATTCGGG 59.736 52.381 0.00 0.00 39.05 5.14
847 1036 3.951115 CCATTCGGGCATGAACATG 57.049 52.632 10.04 10.04 41.60 3.21
848 1037 0.386476 CCATTCGGGCATGAACATGG 59.614 55.000 15.15 0.00 39.16 3.66
849 1038 1.391577 CATTCGGGCATGAACATGGA 58.608 50.000 15.15 3.25 39.16 3.41
850 1039 1.066002 CATTCGGGCATGAACATGGAC 59.934 52.381 15.15 1.39 39.16 4.02
851 1040 0.037447 TTCGGGCATGAACATGGACA 59.963 50.000 15.15 0.00 39.16 4.02
852 1041 0.392863 TCGGGCATGAACATGGACAG 60.393 55.000 15.15 1.70 39.16 3.51
853 1042 0.392863 CGGGCATGAACATGGACAGA 60.393 55.000 15.15 0.00 39.16 3.41
854 1043 1.386533 GGGCATGAACATGGACAGAG 58.613 55.000 15.15 0.00 39.16 3.35
855 1044 0.737219 GGCATGAACATGGACAGAGC 59.263 55.000 15.15 5.53 39.16 4.09
856 1045 1.681166 GGCATGAACATGGACAGAGCT 60.681 52.381 15.15 0.00 39.16 4.09
857 1046 1.669779 GCATGAACATGGACAGAGCTC 59.330 52.381 5.27 5.27 39.16 4.09
858 1047 2.680221 GCATGAACATGGACAGAGCTCT 60.680 50.000 11.45 11.45 39.16 4.09
859 1048 3.431346 GCATGAACATGGACAGAGCTCTA 60.431 47.826 17.75 0.04 39.16 2.43
860 1049 4.743045 GCATGAACATGGACAGAGCTCTAT 60.743 45.833 17.75 4.49 39.16 1.98
861 1050 5.510349 GCATGAACATGGACAGAGCTCTATA 60.510 44.000 17.75 3.33 39.16 1.31
867 1056 6.294473 ACATGGACAGAGCTCTATAAAATGG 58.706 40.000 17.75 3.73 0.00 3.16
872 1061 4.141528 ACAGAGCTCTATAAAATGGCAGCT 60.142 41.667 17.75 0.00 39.93 4.24
883 1072 2.669569 GGCAGCTCTTGTCGCCAA 60.670 61.111 5.66 0.00 44.25 4.52
890 1079 1.363744 CTCTTGTCGCCAACTGATCC 58.636 55.000 0.00 0.00 0.00 3.36
901 1090 2.093447 CCAACTGATCCCACACTACTCC 60.093 54.545 0.00 0.00 0.00 3.85
902 1091 2.567169 CAACTGATCCCACACTACTCCA 59.433 50.000 0.00 0.00 0.00 3.86
906 1098 1.834263 GATCCCACACTACTCCAAGCT 59.166 52.381 0.00 0.00 0.00 3.74
909 1101 2.565834 TCCCACACTACTCCAAGCTAAC 59.434 50.000 0.00 0.00 0.00 2.34
911 1103 2.607187 CACACTACTCCAAGCTAACCG 58.393 52.381 0.00 0.00 0.00 4.44
914 1106 3.442977 ACACTACTCCAAGCTAACCGTAG 59.557 47.826 10.05 10.05 0.00 3.51
917 1109 1.471684 ACTCCAAGCTAACCGTAGTCG 59.528 52.381 0.00 0.00 0.00 4.18
983 1194 2.158769 TCTTCTTCCTGCTGCAAGAACA 60.159 45.455 9.51 0.00 34.39 3.18
1401 1645 4.021925 GCCAAGAGAGGCGGGTGT 62.022 66.667 0.00 0.00 46.12 4.16
1654 1914 1.064314 ACATACTCCTCAGCCTCGTCT 60.064 52.381 0.00 0.00 0.00 4.18
1674 1934 3.790437 CGCCTCTCCACCAGCCAT 61.790 66.667 0.00 0.00 0.00 4.40
1676 1936 1.000396 GCCTCTCCACCAGCCATTT 60.000 57.895 0.00 0.00 0.00 2.32
1842 2135 3.430790 GGCTCAACCTCTGCAAAAGTTTT 60.431 43.478 0.00 0.00 34.51 2.43
1869 2168 5.165961 AGGCTGAAGAATTGTACTAGCAA 57.834 39.130 0.00 0.00 0.00 3.91
2005 2316 4.558095 GCAGACTCATGCAGATTGTTGTTT 60.558 41.667 0.00 0.00 45.77 2.83
2006 2317 5.335113 GCAGACTCATGCAGATTGTTGTTTA 60.335 40.000 0.00 0.00 45.77 2.01
2092 2706 2.546899 TGTACAGTTATGAGGCAGGGT 58.453 47.619 0.00 0.00 0.00 4.34
2133 2811 2.484264 GCAGACCGTATGCTGACTTTTT 59.516 45.455 10.92 0.00 40.59 1.94
2199 2879 2.415168 TGAAAAAGCTAACTGGCGATCG 59.585 45.455 11.69 11.69 37.29 3.69
2268 2948 3.259876 AGTTGTATCAGGGCGACAGTTTA 59.740 43.478 0.00 0.00 0.00 2.01
2276 2956 2.423538 AGGGCGACAGTTTATTCAATGC 59.576 45.455 0.00 0.00 0.00 3.56
2337 3017 1.080025 GCCGCTTCCTCTGTACGTT 60.080 57.895 0.00 0.00 0.00 3.99
2355 3035 1.534163 GTTTACTCGTGTCCTTTGGGC 59.466 52.381 0.00 0.00 0.00 5.36
2409 3092 2.124109 TTCCGCAGCAACACCCAA 60.124 55.556 0.00 0.00 0.00 4.12
2472 3157 3.631144 CAACATTGTCTGTGTTGCGAAT 58.369 40.909 6.12 0.00 46.64 3.34
2473 3158 3.988379 ACATTGTCTGTGTTGCGAATT 57.012 38.095 0.00 0.00 36.48 2.17
2496 3181 1.668101 TTTCCCGCAACAACACCCAC 61.668 55.000 0.00 0.00 0.00 4.61
2497 3182 3.959975 CCCGCAACAACACCCACG 61.960 66.667 0.00 0.00 0.00 4.94
2584 3276 8.512138 ACATAAACTTTGTTGCAAGGTAGTATC 58.488 33.333 0.00 0.00 0.00 2.24
2596 3288 5.685075 GCAAGGTAGTATCCTGCAACACTAT 60.685 44.000 0.00 0.00 37.93 2.12
2614 3306 5.356190 ACACTATCCTTGTTGCAATGATGAG 59.644 40.000 0.59 0.00 0.00 2.90
2617 3309 4.771590 TCCTTGTTGCAATGATGAGAAC 57.228 40.909 0.59 0.00 0.00 3.01
2618 3310 4.143543 TCCTTGTTGCAATGATGAGAACA 58.856 39.130 0.59 0.00 32.02 3.18
2628 3321 1.069978 TGATGAGAACAGCGTTGGACA 59.930 47.619 3.74 0.00 34.93 4.02
2631 3324 1.684450 TGAGAACAGCGTTGGACACTA 59.316 47.619 3.74 0.00 0.00 2.74
2640 3333 3.315749 AGCGTTGGACACTAGATAGCTAC 59.684 47.826 0.00 0.00 0.00 3.58
2651 3344 6.139435 CACTAGATAGCTACACATCTTGACG 58.861 44.000 11.17 1.26 33.58 4.35
2658 3351 4.159693 AGCTACACATCTTGACGGTTATCA 59.840 41.667 0.00 0.00 0.00 2.15
2672 3365 2.421529 GGTTATCAAGGTGGCGGATCTT 60.422 50.000 0.00 0.00 0.00 2.40
2680 3373 4.028993 AGGTGGCGGATCTTTTAGAAAA 57.971 40.909 0.00 0.00 0.00 2.29
2686 3379 5.037385 GGCGGATCTTTTAGAAAAATCTGC 58.963 41.667 20.87 20.87 41.14 4.26
2788 3481 3.074242 ACCCCCGACCAACTAAAATTGTA 59.926 43.478 0.00 0.00 0.00 2.41
2789 3482 3.692593 CCCCCGACCAACTAAAATTGTAG 59.307 47.826 0.74 0.74 0.00 2.74
2829 3535 4.052608 TGTACGAACACGAACATTCACAT 58.947 39.130 0.00 0.00 0.00 3.21
2858 3564 3.683937 GCCCCGCATGTTGTTGCT 61.684 61.111 0.00 0.00 40.54 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.587054 CGAGCCCTCGTATCATCCC 59.413 63.158 9.41 0.00 46.99 3.85
11 12 4.415332 TCGCGTTCACGAGCCCTC 62.415 66.667 5.77 0.00 43.02 4.30
12 13 4.719369 GTCGCGTTCACGAGCCCT 62.719 66.667 5.77 0.00 43.89 5.19
16 17 4.394078 TCGGGTCGCGTTCACGAG 62.394 66.667 21.95 0.00 43.89 4.18
17 18 4.688419 GTCGGGTCGCGTTCACGA 62.688 66.667 21.95 21.95 43.02 4.35
18 19 4.986587 TGTCGGGTCGCGTTCACG 62.987 66.667 18.67 18.67 43.27 4.35
19 20 3.400590 GTGTCGGGTCGCGTTCAC 61.401 66.667 5.77 17.80 0.00 3.18
20 21 4.986587 CGTGTCGGGTCGCGTTCA 62.987 66.667 5.77 7.39 36.71 3.18
29 30 4.742201 CTCACTGGGCGTGTCGGG 62.742 72.222 0.00 0.00 44.16 5.14
30 31 3.916392 GACTCACTGGGCGTGTCGG 62.916 68.421 0.00 0.00 44.16 4.79
31 32 2.430921 GACTCACTGGGCGTGTCG 60.431 66.667 0.00 0.00 44.16 4.35
32 33 2.048127 GGACTCACTGGGCGTGTC 60.048 66.667 0.00 0.00 44.16 3.67
33 34 3.991051 CGGACTCACTGGGCGTGT 61.991 66.667 0.00 0.00 44.16 4.49
38 39 1.613317 TATGTGGCGGACTCACTGGG 61.613 60.000 0.00 0.00 36.21 4.45
39 40 0.179100 CTATGTGGCGGACTCACTGG 60.179 60.000 0.00 0.00 36.21 4.00
40 41 0.179100 CCTATGTGGCGGACTCACTG 60.179 60.000 0.00 0.00 36.21 3.66
41 42 0.324368 TCCTATGTGGCGGACTCACT 60.324 55.000 0.00 0.00 36.21 3.41
42 43 0.179108 GTCCTATGTGGCGGACTCAC 60.179 60.000 0.00 0.00 44.90 3.51
43 44 1.663379 CGTCCTATGTGGCGGACTCA 61.663 60.000 6.85 0.00 45.88 3.41
44 45 1.065928 CGTCCTATGTGGCGGACTC 59.934 63.158 6.85 0.00 45.88 3.36
45 46 3.077519 GCGTCCTATGTGGCGGACT 62.078 63.158 6.85 0.00 45.88 3.85
46 47 2.585247 GCGTCCTATGTGGCGGAC 60.585 66.667 0.00 0.00 44.88 4.79
47 48 3.845259 GGCGTCCTATGTGGCGGA 61.845 66.667 0.00 0.00 36.40 5.54
50 51 2.585247 GTCGGCGTCCTATGTGGC 60.585 66.667 6.85 0.00 35.26 5.01
51 52 1.226974 CTGTCGGCGTCCTATGTGG 60.227 63.158 6.85 0.00 37.10 4.17
52 53 1.878522 GCTGTCGGCGTCCTATGTG 60.879 63.158 6.85 0.00 0.00 3.21
53 54 2.494918 GCTGTCGGCGTCCTATGT 59.505 61.111 6.85 0.00 0.00 2.29
54 55 1.452953 TAGGCTGTCGGCGTCCTATG 61.453 60.000 6.85 0.00 42.94 2.23
55 56 1.152819 TAGGCTGTCGGCGTCCTAT 60.153 57.895 6.85 0.00 42.94 2.57
56 57 1.822613 CTAGGCTGTCGGCGTCCTA 60.823 63.158 6.85 12.34 42.94 2.94
57 58 3.141488 CTAGGCTGTCGGCGTCCT 61.141 66.667 6.85 11.85 42.94 3.85
58 59 3.138798 TCTAGGCTGTCGGCGTCC 61.139 66.667 6.85 4.46 42.94 4.79
59 60 2.102553 GTCTAGGCTGTCGGCGTC 59.897 66.667 6.85 0.72 42.94 5.19
60 61 3.450115 GGTCTAGGCTGTCGGCGT 61.450 66.667 6.85 3.99 42.94 5.68
61 62 3.449227 TGGTCTAGGCTGTCGGCG 61.449 66.667 0.00 0.00 42.94 6.46
62 63 2.184579 GTGGTCTAGGCTGTCGGC 59.815 66.667 0.00 0.00 40.90 5.54
63 64 1.251527 ACAGTGGTCTAGGCTGTCGG 61.252 60.000 0.00 0.00 38.96 4.79
64 65 0.603569 AACAGTGGTCTAGGCTGTCG 59.396 55.000 0.00 0.00 41.94 4.35
65 66 2.300437 AGAAACAGTGGTCTAGGCTGTC 59.700 50.000 0.00 0.00 41.94 3.51
66 67 2.300437 GAGAAACAGTGGTCTAGGCTGT 59.700 50.000 0.00 0.00 44.31 4.40
67 68 2.564947 AGAGAAACAGTGGTCTAGGCTG 59.435 50.000 0.00 0.00 36.41 4.85
68 69 2.896039 AGAGAAACAGTGGTCTAGGCT 58.104 47.619 0.00 0.00 0.00 4.58
69 70 3.686916 AAGAGAAACAGTGGTCTAGGC 57.313 47.619 0.00 0.00 0.00 3.93
70 71 5.476091 AGAAAGAGAAACAGTGGTCTAGG 57.524 43.478 0.00 0.00 0.00 3.02
71 72 9.495572 AATAAAGAAAGAGAAACAGTGGTCTAG 57.504 33.333 0.00 0.00 0.00 2.43
72 73 9.490379 GAATAAAGAAAGAGAAACAGTGGTCTA 57.510 33.333 0.00 0.00 0.00 2.59
73 74 8.214364 AGAATAAAGAAAGAGAAACAGTGGTCT 58.786 33.333 0.00 0.00 0.00 3.85
74 75 8.384607 AGAATAAAGAAAGAGAAACAGTGGTC 57.615 34.615 0.00 0.00 0.00 4.02
75 76 8.753497 AAGAATAAAGAAAGAGAAACAGTGGT 57.247 30.769 0.00 0.00 0.00 4.16
102 103 6.920758 TGAAGACGAAGAGAGAGAAAGAAAAG 59.079 38.462 0.00 0.00 0.00 2.27
121 122 6.744537 GTCACTTGCATGTAATTGATGAAGAC 59.255 38.462 17.19 3.45 0.00 3.01
125 126 4.094739 CGGTCACTTGCATGTAATTGATGA 59.905 41.667 17.19 7.56 0.00 2.92
128 129 3.669536 TCGGTCACTTGCATGTAATTGA 58.330 40.909 11.62 11.62 0.00 2.57
133 134 2.535012 TGTTCGGTCACTTGCATGTA 57.465 45.000 4.73 0.00 0.00 2.29
149 150 8.049117 TGCTCCTCATTTTCTCACTTATATGTT 58.951 33.333 0.00 0.00 0.00 2.71
160 167 2.092212 TCCCCATGCTCCTCATTTTCTC 60.092 50.000 0.00 0.00 31.79 2.87
167 174 3.083349 CCGTCCCCATGCTCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
169 176 3.083997 GTCCGTCCCCATGCTCCT 61.084 66.667 0.00 0.00 0.00 3.69
174 181 2.297701 CCTTATTTGTCCGTCCCCATG 58.702 52.381 0.00 0.00 0.00 3.66
177 184 0.622136 ACCCTTATTTGTCCGTCCCC 59.378 55.000 0.00 0.00 0.00 4.81
178 185 2.502142 AACCCTTATTTGTCCGTCCC 57.498 50.000 0.00 0.00 0.00 4.46
205 218 1.729838 GTCAGTGTCGGAGCGTGTC 60.730 63.158 0.00 0.00 0.00 3.67
213 226 4.082523 ATGCCCGGTCAGTGTCGG 62.083 66.667 16.73 16.73 45.29 4.79
214 227 2.815211 CATGCCCGGTCAGTGTCG 60.815 66.667 0.00 0.00 0.00 4.35
223 236 3.083349 TCCCTCAGACATGCCCGG 61.083 66.667 0.00 0.00 0.00 5.73
253 276 2.311463 ACGAGCATCTACAGCCACTAT 58.689 47.619 0.00 0.00 0.00 2.12
255 278 1.405821 GTACGAGCATCTACAGCCACT 59.594 52.381 0.00 0.00 0.00 4.00
267 290 4.367023 GGGGCACACGTACGAGCA 62.367 66.667 24.41 0.00 0.00 4.26
269 292 0.881159 TTTTGGGGCACACGTACGAG 60.881 55.000 24.41 17.53 0.00 4.18
272 295 3.075884 TCTTATTTTGGGGCACACGTAC 58.924 45.455 0.00 0.00 0.00 3.67
282 305 9.413734 AGAGTTCTCCATTTATCTTATTTTGGG 57.586 33.333 0.00 0.00 0.00 4.12
310 333 6.863126 CGACATAAATTTGAAACTGCTCCTTT 59.137 34.615 0.00 0.00 0.00 3.11
400 444 7.203218 GCTTTCTCATTTGTTTTGGAAGTAGT 58.797 34.615 0.00 0.00 0.00 2.73
401 445 6.642540 GGCTTTCTCATTTGTTTTGGAAGTAG 59.357 38.462 0.00 0.00 0.00 2.57
402 446 6.512297 GGCTTTCTCATTTGTTTTGGAAGTA 58.488 36.000 0.00 0.00 0.00 2.24
504 555 6.065976 TGATCATGGTTTTGTGTAGGAGAT 57.934 37.500 0.00 0.00 0.00 2.75
511 562 3.194116 GCCATCTGATCATGGTTTTGTGT 59.806 43.478 15.24 0.00 44.84 3.72
530 608 3.617288 CGCCATATATTAGTCAGCAGCCA 60.617 47.826 0.00 0.00 0.00 4.75
547 642 2.264794 GGTCGTCTTGGTCGCCAT 59.735 61.111 0.00 0.00 31.53 4.40
548 643 3.998672 GGGTCGTCTTGGTCGCCA 61.999 66.667 0.00 0.00 0.00 5.69
626 754 2.547798 CCGATCATGCATGCGACG 59.452 61.111 22.25 22.61 0.00 5.12
643 771 6.931840 AGAAGAACCGATATATTTTCTCTGGC 59.068 38.462 5.93 0.00 0.00 4.85
685 828 0.792640 GTCTGACACGACCAATGCAG 59.207 55.000 2.24 0.00 0.00 4.41
750 914 1.136147 CATGCACGCTTTGGAGAGC 59.864 57.895 0.00 0.00 39.29 4.09
769 933 1.256895 CCGTAATGGCGAATACACGTG 59.743 52.381 15.48 15.48 35.59 4.49
771 935 1.784856 CTCCGTAATGGCGAATACACG 59.215 52.381 0.00 0.00 37.80 4.49
772 936 2.132762 CCTCCGTAATGGCGAATACAC 58.867 52.381 0.00 0.00 37.80 2.90
791 968 0.252558 TGGGACAAGGGGAGTACTCC 60.253 60.000 30.72 30.72 42.52 3.85
792 969 3.393854 TGGGACAAGGGGAGTACTC 57.606 57.895 14.87 14.87 31.92 2.59
814 1003 2.031769 CGAATGGCGAATACATGTGCAT 60.032 45.455 9.11 0.00 44.57 3.96
816 1005 1.334059 CCGAATGGCGAATACATGTGC 60.334 52.381 9.11 2.57 44.57 4.57
818 1007 1.593196 CCCGAATGGCGAATACATGT 58.407 50.000 2.69 2.69 44.57 3.21
829 1018 0.386476 CCATGTTCATGCCCGAATGG 59.614 55.000 7.21 0.00 37.09 3.16
830 1019 1.066002 GTCCATGTTCATGCCCGAATG 59.934 52.381 7.21 0.00 0.00 2.67
831 1020 1.340893 TGTCCATGTTCATGCCCGAAT 60.341 47.619 7.21 0.00 0.00 3.34
832 1021 0.037447 TGTCCATGTTCATGCCCGAA 59.963 50.000 7.21 0.00 0.00 4.30
833 1022 0.392863 CTGTCCATGTTCATGCCCGA 60.393 55.000 7.21 0.00 0.00 5.14
834 1023 0.392863 TCTGTCCATGTTCATGCCCG 60.393 55.000 7.21 0.00 0.00 6.13
835 1024 1.386533 CTCTGTCCATGTTCATGCCC 58.613 55.000 7.21 1.32 0.00 5.36
836 1025 0.737219 GCTCTGTCCATGTTCATGCC 59.263 55.000 7.21 1.62 0.00 4.40
837 1026 1.669779 GAGCTCTGTCCATGTTCATGC 59.330 52.381 6.43 0.00 0.00 4.06
838 1027 3.263489 AGAGCTCTGTCCATGTTCATG 57.737 47.619 17.42 5.88 0.00 3.07
839 1028 6.737720 TTATAGAGCTCTGTCCATGTTCAT 57.262 37.500 26.78 9.82 0.00 2.57
840 1029 6.544928 TTTATAGAGCTCTGTCCATGTTCA 57.455 37.500 26.78 1.86 0.00 3.18
841 1030 7.041508 CCATTTTATAGAGCTCTGTCCATGTTC 60.042 40.741 26.78 0.00 0.00 3.18
842 1031 6.769822 CCATTTTATAGAGCTCTGTCCATGTT 59.230 38.462 26.78 0.00 0.00 2.71
843 1032 6.294473 CCATTTTATAGAGCTCTGTCCATGT 58.706 40.000 26.78 4.08 0.00 3.21
844 1033 5.180868 GCCATTTTATAGAGCTCTGTCCATG 59.819 44.000 26.78 19.25 0.00 3.66
845 1034 5.163163 TGCCATTTTATAGAGCTCTGTCCAT 60.163 40.000 26.78 13.88 0.00 3.41
846 1035 4.164030 TGCCATTTTATAGAGCTCTGTCCA 59.836 41.667 26.78 6.42 0.00 4.02
847 1036 4.708177 TGCCATTTTATAGAGCTCTGTCC 58.292 43.478 26.78 4.80 0.00 4.02
848 1037 4.213059 GCTGCCATTTTATAGAGCTCTGTC 59.787 45.833 26.78 6.33 0.00 3.51
849 1038 4.133078 GCTGCCATTTTATAGAGCTCTGT 58.867 43.478 26.78 22.11 0.00 3.41
850 1039 4.387598 AGCTGCCATTTTATAGAGCTCTG 58.612 43.478 26.78 8.20 31.05 3.35
851 1040 4.640364 GAGCTGCCATTTTATAGAGCTCT 58.360 43.478 22.17 22.17 45.84 4.09
853 1042 4.703379 AGAGCTGCCATTTTATAGAGCT 57.297 40.909 0.00 0.00 39.46 4.09
854 1043 4.578105 ACAAGAGCTGCCATTTTATAGAGC 59.422 41.667 0.00 0.00 0.00 4.09
855 1044 5.050499 CGACAAGAGCTGCCATTTTATAGAG 60.050 44.000 0.00 0.00 0.00 2.43
856 1045 4.811024 CGACAAGAGCTGCCATTTTATAGA 59.189 41.667 0.00 0.00 0.00 1.98
857 1046 4.553547 GCGACAAGAGCTGCCATTTTATAG 60.554 45.833 0.00 0.00 0.00 1.31
858 1047 3.312421 GCGACAAGAGCTGCCATTTTATA 59.688 43.478 0.00 0.00 0.00 0.98
859 1048 2.098117 GCGACAAGAGCTGCCATTTTAT 59.902 45.455 0.00 0.00 0.00 1.40
860 1049 1.468520 GCGACAAGAGCTGCCATTTTA 59.531 47.619 0.00 0.00 0.00 1.52
861 1050 0.242017 GCGACAAGAGCTGCCATTTT 59.758 50.000 0.00 0.00 0.00 1.82
883 1072 2.623418 TGGAGTAGTGTGGGATCAGT 57.377 50.000 0.00 0.00 0.00 3.41
890 1079 2.674177 CGGTTAGCTTGGAGTAGTGTGG 60.674 54.545 0.00 0.00 0.00 4.17
909 1101 0.450482 CGCTTTGCAAACGACTACGG 60.450 55.000 21.65 7.23 44.46 4.02
911 1103 2.696290 GCGCTTTGCAAACGACTAC 58.304 52.632 26.93 12.77 45.45 2.73
1401 1645 1.502039 ACCTCCCGGATACCTATGTCA 59.498 52.381 0.73 0.00 0.00 3.58
1654 1914 3.075005 GCTGGTGGAGAGGCGGTA 61.075 66.667 0.00 0.00 0.00 4.02
1674 1934 2.143122 GAAGCACTCACGGTGATGAAA 58.857 47.619 11.86 0.00 44.41 2.69
1676 1936 0.037326 GGAAGCACTCACGGTGATGA 60.037 55.000 11.86 0.00 44.41 2.92
1842 2135 5.489792 AGTACAATTCTTCAGCCTTGAGA 57.510 39.130 0.00 0.00 34.15 3.27
1869 2168 9.797642 TTTATTTATGATCATACATCTGCACCT 57.202 29.630 15.10 0.00 0.00 4.00
2092 2706 4.717877 TGCTTGTCCTTGAATCTTTCTGA 58.282 39.130 0.00 0.00 0.00 3.27
2133 2811 3.445805 GCGGGATTCCCAAAATAAGAACA 59.554 43.478 21.72 0.00 45.83 3.18
2160 2840 8.967218 GCTTTTTCATAAATTTATATGCTGCGA 58.033 29.630 10.34 0.00 34.05 5.10
2199 2879 1.135139 TGCCATACTCTCTCTGCGAAC 59.865 52.381 0.00 0.00 0.00 3.95
2276 2956 1.435577 GGCTGAAGGCAAGCATTTTG 58.564 50.000 8.75 0.00 44.01 2.44
2324 3004 3.565482 ACACGAGTAAACGTACAGAGGAA 59.435 43.478 0.00 0.00 44.76 3.36
2337 3017 0.035739 GGCCCAAAGGACACGAGTAA 59.964 55.000 0.00 0.00 43.07 2.24
2355 3035 2.260844 TGGTGTTGCAGAAAGAGAGG 57.739 50.000 0.00 0.00 0.00 3.69
2577 3269 7.848201 AACAAGGATAGTGTTGCAGGATACTAC 60.848 40.741 0.00 0.00 40.96 2.73
2578 3270 6.156256 AACAAGGATAGTGTTGCAGGATACTA 59.844 38.462 0.00 0.00 40.96 1.82
2584 3276 3.837213 CAACAAGGATAGTGTTGCAGG 57.163 47.619 4.52 0.00 46.63 4.85
2596 3288 4.143543 TGTTCTCATCATTGCAACAAGGA 58.856 39.130 0.00 0.00 0.00 3.36
2614 3306 2.433868 TCTAGTGTCCAACGCTGTTC 57.566 50.000 3.51 0.00 39.60 3.18
2617 3309 2.099921 AGCTATCTAGTGTCCAACGCTG 59.900 50.000 3.51 0.00 39.60 5.18
2618 3310 2.379972 AGCTATCTAGTGTCCAACGCT 58.620 47.619 0.00 0.00 42.35 5.07
2628 3321 5.239744 CCGTCAAGATGTGTAGCTATCTAGT 59.760 44.000 0.00 0.00 33.49 2.57
2631 3324 3.954904 ACCGTCAAGATGTGTAGCTATCT 59.045 43.478 0.00 0.00 35.25 1.98
2651 3344 1.141053 AGATCCGCCACCTTGATAACC 59.859 52.381 0.00 0.00 0.00 2.85
2658 3351 3.713826 TTCTAAAAGATCCGCCACCTT 57.286 42.857 0.00 0.00 0.00 3.50
2662 3355 5.393027 GCAGATTTTTCTAAAAGATCCGCCA 60.393 40.000 0.00 0.00 0.00 5.69
2672 3365 1.470890 CGGCCGGCAGATTTTTCTAAA 59.529 47.619 30.85 0.00 0.00 1.85
2788 3481 5.914635 CGTACAAGTTTTGCATGACATTTCT 59.085 36.000 0.00 0.00 0.00 2.52
2789 3482 5.912396 TCGTACAAGTTTTGCATGACATTTC 59.088 36.000 0.00 0.00 0.00 2.17
2829 3535 1.419381 TGCGGGGCATCATCTAGTTA 58.581 50.000 0.00 0.00 31.71 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.