Multiple sequence alignment - TraesCS5D01G228800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G228800 chr5D 100.000 4869 0 0 3055 7923 336062889 336058021 0.000000e+00 8992.0
1 TraesCS5D01G228800 chr5D 100.000 2844 0 0 1 2844 336065943 336063100 0.000000e+00 5252.0
2 TraesCS5D01G228800 chr5A 98.488 2315 24 5 5616 7923 437221539 437219229 0.000000e+00 4071.0
3 TraesCS5D01G228800 chr5A 96.584 1405 27 10 3837 5234 437222980 437221590 0.000000e+00 2309.0
4 TraesCS5D01G228800 chr5A 94.996 1119 48 3 806 1916 437226354 437225236 0.000000e+00 1749.0
5 TraesCS5D01G228800 chr5A 96.457 875 29 2 1971 2844 437225157 437224284 0.000000e+00 1443.0
6 TraesCS5D01G228800 chr5A 95.780 782 27 3 3055 3836 437223927 437223152 0.000000e+00 1256.0
7 TraesCS5D01G228800 chr5A 92.045 528 26 7 263 786 437226855 437226340 0.000000e+00 728.0
8 TraesCS5D01G228800 chr5A 95.161 310 11 2 1 306 437227165 437226856 3.320000e-133 486.0
9 TraesCS5D01G228800 chr5B 95.007 1402 56 10 3837 5234 394021964 394020573 0.000000e+00 2189.0
10 TraesCS5D01G228800 chr5B 91.201 1182 46 16 806 1976 394025223 394024089 0.000000e+00 1554.0
11 TraesCS5D01G228800 chr5B 97.342 903 18 3 6253 7155 394020013 394019117 0.000000e+00 1530.0
12 TraesCS5D01G228800 chr5B 97.022 873 16 5 1976 2844 394024022 394023156 0.000000e+00 1459.0
13 TraesCS5D01G228800 chr5B 96.036 782 23 4 3055 3836 394022908 394022135 0.000000e+00 1266.0
14 TraesCS5D01G228800 chr5B 98.028 355 5 1 5263 5617 86175914 86175562 4.060000e-172 616.0
15 TraesCS5D01G228800 chr5B 91.799 378 17 9 7161 7525 394019084 394018708 1.520000e-141 514.0
16 TraesCS5D01G228800 chr5B 93.438 320 21 0 7604 7923 394018684 394018365 7.190000e-130 475.0
17 TraesCS5D01G228800 chr5B 93.200 250 11 6 5616 5862 394020518 394020272 5.840000e-96 363.0
18 TraesCS5D01G228800 chr5B 93.953 215 13 0 5939 6153 394020250 394020036 7.670000e-85 326.0
19 TraesCS5D01G228800 chr5B 82.422 256 21 12 534 786 394025443 394025209 1.350000e-47 202.0
20 TraesCS5D01G228800 chr5B 94.737 76 4 0 174 249 394025443 394025368 1.400000e-22 119.0
21 TraesCS5D01G228800 chr5B 93.878 49 3 0 658 706 471858463 471858511 3.070000e-09 75.0
22 TraesCS5D01G228800 chr2D 99.135 347 3 0 5263 5609 402239092 402239438 6.750000e-175 625.0
23 TraesCS5D01G228800 chr2D 98.851 348 4 0 5263 5610 370058370 370058023 8.730000e-174 621.0
24 TraesCS5D01G228800 chr2D 98.300 353 6 0 5263 5615 295166014 295166366 3.140000e-173 619.0
25 TraesCS5D01G228800 chr7D 98.310 355 4 1 5263 5617 429475860 429475508 8.730000e-174 621.0
26 TraesCS5D01G228800 chr7D 91.111 45 4 0 664 708 523269225 523269181 2.390000e-05 62.1
27 TraesCS5D01G228800 chr1D 98.851 348 4 0 5263 5610 333498335 333497988 8.730000e-174 621.0
28 TraesCS5D01G228800 chr4D 97.765 358 6 1 5263 5620 16809487 16809132 4.060000e-172 616.0
29 TraesCS5D01G228800 chr6B 97.230 361 5 4 5263 5621 173801161 173801518 2.450000e-169 606.0
30 TraesCS5D01G228800 chr7B 95.979 373 12 3 5263 5634 446989999 446990369 3.160000e-168 603.0
31 TraesCS5D01G228800 chr1A 78.451 297 41 12 73 350 493103073 493102781 1.060000e-38 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G228800 chr5D 336058021 336065943 7922 True 7122.000000 8992 100.000000 1 7923 2 chr5D.!!$R1 7922
1 TraesCS5D01G228800 chr5A 437219229 437227165 7936 True 1720.285714 4071 95.644429 1 7923 7 chr5A.!!$R1 7922
2 TraesCS5D01G228800 chr5B 394018365 394025443 7078 True 908.818182 2189 93.287000 174 7923 11 chr5B.!!$R2 7749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 766 0.517316 GCAGTGGCTACTTTCCGTTG 59.483 55.000 0.00 0.0 34.07 4.10 F
1058 1129 1.068250 GCCTCTTCTCGGCGCTTAT 59.932 57.895 7.64 0.0 37.87 1.73 F
1682 1757 0.250858 TGAGTGCCTGAATGGTGGTG 60.251 55.000 0.00 0.0 38.35 4.17 F
1948 2023 0.965439 TTGCCTTGCGCTGGTTAAAT 59.035 45.000 9.73 0.0 38.78 1.40 F
3150 3442 2.749621 ACCATTGCCTCATTTCGTCTTC 59.250 45.455 0.00 0.0 0.00 2.87 F
4074 4538 0.759060 GGCCCAGAGGTTGGTGTTTT 60.759 55.000 0.00 0.0 46.25 2.43 F
5327 5833 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.0 0.00 4.52 F
5426 5932 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.0 37.02 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1595 0.323178 GGTCGGAGTAGTGGGACAGA 60.323 60.000 0.00 0.00 41.80 3.41 R
2723 2869 2.004583 TCGCTTGGTTTACATCCTCG 57.995 50.000 0.00 0.00 0.00 4.63 R
3559 3852 1.967779 TGGAACAACCGTCTCATGAGA 59.032 47.619 21.67 21.67 42.61 3.27 R
3597 3890 2.627699 TGGCCAAAGGAAGAAATCACAC 59.372 45.455 0.61 0.00 0.00 3.82 R
4752 5218 0.729116 ATGCGCATGACAGTAGCAAC 59.271 50.000 24.69 0.00 41.37 4.17 R
5389 5895 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94 R
6359 6878 4.082081 TCAGGCAATTTGATAAAGCACCAG 60.082 41.667 0.00 0.00 0.00 4.00 R
7174 7720 4.508124 GCCTGGATGTATTTAGAAGACACG 59.492 45.833 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 159 9.048446 AGAAAACATGATCAAACAAAATCCAAG 57.952 29.630 0.00 0.00 0.00 3.61
236 241 2.617532 GCCAACATTTGAGGAGCTCTCT 60.618 50.000 14.64 9.10 42.86 3.10
237 242 3.008330 CCAACATTTGAGGAGCTCTCTG 58.992 50.000 14.64 6.54 42.86 3.35
281 292 5.290643 GTGTGCACTTTGAGCATTGTTTTTA 59.709 36.000 19.41 0.00 44.79 1.52
318 374 5.906073 AGCTCCACATATGTTATTTTTGGC 58.094 37.500 5.37 2.93 0.00 4.52
357 413 7.552687 AGGAGCTCGAACATTTGATGTATTAAA 59.447 33.333 7.83 0.00 44.07 1.52
446 502 4.644954 GCAGTGGCTACGTTAAATTACAC 58.355 43.478 0.00 0.00 36.96 2.90
454 510 6.258160 GCTACGTTAAATTACACCGAGAGTA 58.742 40.000 0.00 0.00 0.00 2.59
469 525 4.174762 CGAGAGTAAAGGAAAGTAGCCAC 58.825 47.826 0.00 0.00 0.00 5.01
568 625 3.988379 AATGTTCGAGCTTCTTGCAAA 57.012 38.095 0.00 0.00 45.94 3.68
644 701 7.951530 AATCATCAATGTTCAAAAGGTTCAC 57.048 32.000 0.00 0.00 0.00 3.18
645 702 5.518812 TCATCAATGTTCAAAAGGTTCACG 58.481 37.500 0.00 0.00 0.00 4.35
648 705 5.336744 TCAATGTTCAAAAGGTTCACGTTC 58.663 37.500 0.00 0.00 0.00 3.95
653 710 5.124776 TGTTCAAAAGGTTCACGTTCTTCAT 59.875 36.000 0.00 0.00 0.00 2.57
655 712 5.816919 TCAAAAGGTTCACGTTCTTCATTC 58.183 37.500 0.00 0.00 0.00 2.67
708 766 0.517316 GCAGTGGCTACTTTCCGTTG 59.483 55.000 0.00 0.00 34.07 4.10
754 814 3.047877 GTCGGAAAGTGTGGGGCG 61.048 66.667 0.00 0.00 0.00 6.13
786 846 1.205064 CACAGCACCGAGAAAAGCG 59.795 57.895 0.00 0.00 0.00 4.68
848 908 2.494918 GTGGCCGACACGAGCTAT 59.505 61.111 0.00 0.00 40.85 2.97
861 924 2.355244 GCTATCTCGCTCCGTGCC 60.355 66.667 0.00 0.00 38.78 5.01
883 946 2.347490 GTCCCGCATGTCAGTGGT 59.653 61.111 0.00 0.00 37.47 4.16
914 977 1.098712 GTGTCACTTTTCACCGCCCA 61.099 55.000 0.00 0.00 0.00 5.36
942 1009 1.153349 CAGCCTTCTCCCGCCTTAC 60.153 63.158 0.00 0.00 0.00 2.34
983 1050 4.728110 TCTCCCCTCGCCGTCGAA 62.728 66.667 0.00 0.00 44.98 3.71
1057 1128 2.494918 GCCTCTTCTCGGCGCTTA 59.505 61.111 7.64 0.00 37.87 3.09
1058 1129 1.068250 GCCTCTTCTCGGCGCTTAT 59.932 57.895 7.64 0.00 37.87 1.73
1400 1475 3.761752 GCCCCTGTCTTGTTGCTTTATTA 59.238 43.478 0.00 0.00 0.00 0.98
1407 1482 9.722056 CCTGTCTTGTTGCTTTATTATAATGTC 57.278 33.333 8.28 0.00 0.00 3.06
1478 1553 6.086765 GCATTTATGTGAACAAGAACGTCAAG 59.913 38.462 0.00 0.00 0.00 3.02
1484 1559 2.550830 ACAAGAACGTCAAGCTGGAT 57.449 45.000 0.00 0.00 0.00 3.41
1502 1577 2.486191 GGATGACCTGCAAGTCTATGGG 60.486 54.545 16.18 0.00 37.66 4.00
1505 1580 2.375174 TGACCTGCAAGTCTATGGGTTT 59.625 45.455 16.18 0.00 37.66 3.27
1514 1589 5.294552 GCAAGTCTATGGGTTTGACTATGAC 59.705 44.000 0.00 0.00 39.78 3.06
1520 1595 6.895756 TCTATGGGTTTGACTATGACTACACT 59.104 38.462 0.00 0.00 0.00 3.55
1526 1601 5.899120 TTGACTATGACTACACTCTGTCC 57.101 43.478 0.00 0.00 32.67 4.02
1604 1679 0.251787 ATGAGGTTTGGCTGTTCCCC 60.252 55.000 0.00 0.00 0.00 4.81
1615 1690 1.882352 GCTGTTCCCCGTTCTTGATGT 60.882 52.381 0.00 0.00 0.00 3.06
1682 1757 0.250858 TGAGTGCCTGAATGGTGGTG 60.251 55.000 0.00 0.00 38.35 4.17
1909 1984 7.687941 AAAATGTAGGTTCTCACTAATGTGG 57.312 36.000 0.00 0.00 43.94 4.17
1945 2020 2.265182 GGTTGCCTTGCGCTGGTTA 61.265 57.895 9.73 2.18 38.78 2.85
1946 2021 1.657556 GTTGCCTTGCGCTGGTTAA 59.342 52.632 9.73 8.14 38.78 2.01
1948 2023 0.965439 TTGCCTTGCGCTGGTTAAAT 59.035 45.000 9.73 0.00 38.78 1.40
1972 2047 5.916318 TGTTGAATTCAAGCTTGGACATTT 58.084 33.333 25.73 9.21 36.39 2.32
2538 2684 6.424812 TGCAAAGATATATTCCACAGTGATCG 59.575 38.462 0.62 0.00 0.00 3.69
2562 2708 4.333649 GCCCTAGGTCGTTTATAAAACACC 59.666 45.833 8.29 14.98 0.00 4.16
2723 2869 7.659652 GGAGTTTGATGCTCCTTATGTATAC 57.340 40.000 4.26 0.00 46.71 1.47
3077 3369 4.810790 ACCTGATACTGTTTCTCGTCTTG 58.189 43.478 0.17 0.00 0.00 3.02
3150 3442 2.749621 ACCATTGCCTCATTTCGTCTTC 59.250 45.455 0.00 0.00 0.00 2.87
3265 3557 4.823989 GTGGATGGAGGGATGAGTTATTTG 59.176 45.833 0.00 0.00 0.00 2.32
3333 3626 8.682710 TCTCCATGCATAGTTTACCATTAAAAC 58.317 33.333 0.00 0.00 37.14 2.43
3451 3744 3.693578 TGTGATTGTGAAACTGTCAAGCA 59.306 39.130 0.00 0.00 38.23 3.91
3527 3820 8.955061 TGTTTTACTACTACATCGTAGTTGTC 57.045 34.615 19.66 9.95 45.76 3.18
3559 3852 6.325919 TGTTCTGCCATTCTCGTAATTTTT 57.674 33.333 0.00 0.00 0.00 1.94
3597 3890 7.822161 TGTTCCAAATATGAAGGGTATCATG 57.178 36.000 0.23 0.00 40.21 3.07
3606 3899 6.949352 ATGAAGGGTATCATGTGTGATTTC 57.051 37.500 0.00 0.00 42.37 2.17
3609 3902 6.599244 TGAAGGGTATCATGTGTGATTTCTTC 59.401 38.462 14.19 14.19 42.37 2.87
3612 3905 5.888161 GGGTATCATGTGTGATTTCTTCCTT 59.112 40.000 0.00 0.00 42.37 3.36
3626 3919 4.118168 TCTTCCTTTGGCCATTCTTCTT 57.882 40.909 6.09 0.00 0.00 2.52
3627 3920 4.082125 TCTTCCTTTGGCCATTCTTCTTC 58.918 43.478 6.09 0.00 0.00 2.87
3628 3921 3.814504 TCCTTTGGCCATTCTTCTTCT 57.185 42.857 6.09 0.00 0.00 2.85
3635 3928 3.010472 TGGCCATTCTTCTTCTCCATTCA 59.990 43.478 0.00 0.00 0.00 2.57
3895 4359 6.207221 TGTTACATGTTCTGCACAATCATTCT 59.793 34.615 2.30 0.00 39.50 2.40
4074 4538 0.759060 GGCCCAGAGGTTGGTGTTTT 60.759 55.000 0.00 0.00 46.25 2.43
4093 4557 8.567948 GGTGTTTTGAATCTGAAGAAGTATCAA 58.432 33.333 0.00 0.00 33.07 2.57
4146 4610 7.721286 AACTTTTCTGTCTAGAGTGACATTG 57.279 36.000 0.00 0.00 44.66 2.82
4188 4652 9.463003 CAACACAATATTTTTCATACATTTGCG 57.537 29.630 0.00 0.00 0.00 4.85
4199 4663 6.825284 TCATACATTTGCGCATTTTAATGG 57.175 33.333 27.30 15.22 36.90 3.16
4200 4664 6.336566 TCATACATTTGCGCATTTTAATGGT 58.663 32.000 27.30 18.36 36.90 3.55
4201 4665 4.925061 ACATTTGCGCATTTTAATGGTG 57.075 36.364 27.30 11.95 36.90 4.17
4202 4666 4.564041 ACATTTGCGCATTTTAATGGTGA 58.436 34.783 27.30 2.03 36.90 4.02
4203 4667 5.177326 ACATTTGCGCATTTTAATGGTGAT 58.823 33.333 27.30 10.95 36.90 3.06
4204 4668 5.642919 ACATTTGCGCATTTTAATGGTGATT 59.357 32.000 27.30 10.66 36.90 2.57
4205 4669 6.149142 ACATTTGCGCATTTTAATGGTGATTT 59.851 30.769 27.30 10.10 36.90 2.17
4244 4708 1.893137 AGTGGAAGCTGTCACACGATA 59.107 47.619 18.16 0.00 38.78 2.92
4259 4723 6.199154 GTCACACGATATAGGTTCATCTGTTG 59.801 42.308 0.00 0.00 0.00 3.33
4312 4776 8.391075 TGCTTAATCTAATTAGGTAATGCCAC 57.609 34.615 12.54 0.00 40.61 5.01
4353 4817 0.918258 TATTGCAGAGGCCACCATCA 59.082 50.000 5.01 0.00 40.13 3.07
4413 4877 2.981859 ACTGACTTGTGGACGTTCTT 57.018 45.000 0.00 0.00 0.00 2.52
4707 5173 2.346803 CGGTTCCAACAGGTCTGTATG 58.653 52.381 3.87 5.46 44.13 2.39
4752 5218 3.557595 ACTGAGTTTCTCTTTCAACAGCG 59.442 43.478 0.00 0.00 0.00 5.18
4819 5285 0.323178 CCATGGAAAGCAGCCTCAGT 60.323 55.000 5.56 0.00 0.00 3.41
4862 5328 3.063452 GCAACTTGTTCGTCAACTCTTCA 59.937 43.478 0.00 0.00 33.17 3.02
5054 5528 3.182887 TCTCTCCTCTTCAGCCTTTCT 57.817 47.619 0.00 0.00 0.00 2.52
5104 5578 5.105877 GGTAATTGCCCCAAAGAACTAAGAC 60.106 44.000 0.16 0.00 0.00 3.01
5202 5676 5.932303 TGTAATCTTTGTCAAGCTCTGTACC 59.068 40.000 0.00 0.00 0.00 3.34
5223 5698 5.438761 CCGAACTGGTTTCATTTTTCTCT 57.561 39.130 0.00 0.00 33.24 3.10
5224 5699 5.452777 CCGAACTGGTTTCATTTTTCTCTC 58.547 41.667 0.00 0.00 33.24 3.20
5225 5700 5.239525 CCGAACTGGTTTCATTTTTCTCTCT 59.760 40.000 0.00 0.00 33.24 3.10
5227 5702 6.566753 CGAACTGGTTTCATTTTTCTCTCTCC 60.567 42.308 0.00 0.00 33.24 3.71
5228 5703 5.946486 ACTGGTTTCATTTTTCTCTCTCCT 58.054 37.500 0.00 0.00 0.00 3.69
5229 5704 5.767168 ACTGGTTTCATTTTTCTCTCTCCTG 59.233 40.000 0.00 0.00 0.00 3.86
5230 5705 4.520492 TGGTTTCATTTTTCTCTCTCCTGC 59.480 41.667 0.00 0.00 0.00 4.85
5232 5707 5.242615 GGTTTCATTTTTCTCTCTCCTGCTT 59.757 40.000 0.00 0.00 0.00 3.91
5262 5768 6.775594 AAGTATTTTGAAGGGCCAATAGTC 57.224 37.500 6.18 0.00 0.00 2.59
5263 5769 5.201243 AGTATTTTGAAGGGCCAATAGTCC 58.799 41.667 6.18 0.00 0.00 3.85
5264 5770 3.825908 TTTTGAAGGGCCAATAGTCCT 57.174 42.857 6.18 0.00 0.00 3.85
5265 5771 4.938575 TTTTGAAGGGCCAATAGTCCTA 57.061 40.909 6.18 0.00 0.00 2.94
5266 5772 5.466127 TTTTGAAGGGCCAATAGTCCTAT 57.534 39.130 6.18 0.00 0.00 2.57
5267 5773 4.437682 TTGAAGGGCCAATAGTCCTATG 57.562 45.455 6.18 0.00 0.00 2.23
5268 5774 3.393687 TGAAGGGCCAATAGTCCTATGT 58.606 45.455 6.18 0.00 0.00 2.29
5269 5775 3.391296 TGAAGGGCCAATAGTCCTATGTC 59.609 47.826 6.18 0.00 0.00 3.06
5270 5776 3.352611 AGGGCCAATAGTCCTATGTCT 57.647 47.619 6.18 0.00 0.00 3.41
5271 5777 3.669949 AGGGCCAATAGTCCTATGTCTT 58.330 45.455 6.18 0.00 0.00 3.01
5272 5778 3.648545 AGGGCCAATAGTCCTATGTCTTC 59.351 47.826 6.18 0.00 0.00 2.87
5273 5779 3.648545 GGGCCAATAGTCCTATGTCTTCT 59.351 47.826 4.39 0.00 0.00 2.85
5274 5780 4.838986 GGGCCAATAGTCCTATGTCTTCTA 59.161 45.833 4.39 0.00 0.00 2.10
5275 5781 5.046950 GGGCCAATAGTCCTATGTCTTCTAG 60.047 48.000 4.39 0.00 0.00 2.43
5276 5782 5.046950 GGCCAATAGTCCTATGTCTTCTAGG 60.047 48.000 0.00 0.00 37.66 3.02
5277 5783 5.567823 GCCAATAGTCCTATGTCTTCTAGGC 60.568 48.000 0.00 0.00 36.48 3.93
5278 5784 5.540337 CCAATAGTCCTATGTCTTCTAGGCA 59.460 44.000 0.00 0.00 36.48 4.75
5279 5785 6.212388 CCAATAGTCCTATGTCTTCTAGGCAT 59.788 42.308 0.00 0.00 43.89 4.40
5280 5786 7.397476 CCAATAGTCCTATGTCTTCTAGGCATA 59.603 40.741 1.51 1.51 39.06 3.14
5292 5798 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
5293 5799 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
5294 5800 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
5295 5801 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
5304 5810 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
5305 5811 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
5306 5812 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
5307 5813 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
5308 5814 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
5309 5815 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
5310 5816 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
5311 5817 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
5312 5818 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
5313 5819 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
5314 5820 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
5315 5821 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
5316 5822 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
5317 5823 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
5318 5824 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
5319 5825 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
5320 5826 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
5321 5827 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
5322 5828 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
5323 5829 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
5324 5830 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
5325 5831 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
5326 5832 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
5327 5833 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
5328 5834 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
5329 5835 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
5330 5836 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
5341 5847 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
5342 5848 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
5343 5849 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
5344 5850 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
5345 5851 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
5346 5852 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
5347 5853 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
5348 5854 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
5349 5855 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
5350 5856 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
5351 5857 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
5352 5858 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
5353 5859 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
5354 5860 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
5355 5861 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
5356 5862 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
5357 5863 4.223477 ACGTAAAAACTAGCCAGTCCCATA 59.777 41.667 0.00 0.00 32.29 2.74
5358 5864 4.809426 CGTAAAAACTAGCCAGTCCCATAG 59.191 45.833 0.00 0.00 32.29 2.23
5359 5865 3.933861 AAAACTAGCCAGTCCCATAGG 57.066 47.619 0.00 0.00 32.29 2.57
5360 5866 2.570386 AACTAGCCAGTCCCATAGGT 57.430 50.000 0.00 0.00 32.29 3.08
5361 5867 1.794714 ACTAGCCAGTCCCATAGGTG 58.205 55.000 0.00 0.00 0.00 4.00
5362 5868 1.008449 ACTAGCCAGTCCCATAGGTGT 59.992 52.381 0.00 0.00 0.00 4.16
5363 5869 1.414181 CTAGCCAGTCCCATAGGTGTG 59.586 57.143 0.00 0.00 0.00 3.82
5364 5870 0.252696 AGCCAGTCCCATAGGTGTGA 60.253 55.000 0.00 0.00 0.00 3.58
5365 5871 0.618458 GCCAGTCCCATAGGTGTGAA 59.382 55.000 0.00 0.00 0.00 3.18
5366 5872 1.004277 GCCAGTCCCATAGGTGTGAAA 59.996 52.381 0.00 0.00 0.00 2.69
5367 5873 2.711542 CCAGTCCCATAGGTGTGAAAC 58.288 52.381 0.00 0.00 37.35 2.78
5377 5883 2.438868 GGTGTGAAACCCATTTGAGC 57.561 50.000 0.00 0.00 44.02 4.26
5378 5884 1.335872 GGTGTGAAACCCATTTGAGCG 60.336 52.381 0.00 0.00 44.02 5.03
5379 5885 1.606668 GTGTGAAACCCATTTGAGCGA 59.393 47.619 0.00 0.00 34.36 4.93
5380 5886 1.879380 TGTGAAACCCATTTGAGCGAG 59.121 47.619 0.00 0.00 34.36 5.03
5381 5887 2.151202 GTGAAACCCATTTGAGCGAGA 58.849 47.619 0.00 0.00 0.00 4.04
5382 5888 2.160417 GTGAAACCCATTTGAGCGAGAG 59.840 50.000 0.00 0.00 0.00 3.20
5383 5889 2.224523 TGAAACCCATTTGAGCGAGAGT 60.225 45.455 0.00 0.00 0.00 3.24
5384 5890 3.007506 TGAAACCCATTTGAGCGAGAGTA 59.992 43.478 0.00 0.00 0.00 2.59
5385 5891 3.695830 AACCCATTTGAGCGAGAGTAA 57.304 42.857 0.00 0.00 0.00 2.24
5386 5892 3.914426 ACCCATTTGAGCGAGAGTAAT 57.086 42.857 0.00 0.00 0.00 1.89
5387 5893 5.353394 AACCCATTTGAGCGAGAGTAATA 57.647 39.130 0.00 0.00 0.00 0.98
5388 5894 5.353394 ACCCATTTGAGCGAGAGTAATAA 57.647 39.130 0.00 0.00 0.00 1.40
5389 5895 5.930135 ACCCATTTGAGCGAGAGTAATAAT 58.070 37.500 0.00 0.00 0.00 1.28
5390 5896 7.062749 ACCCATTTGAGCGAGAGTAATAATA 57.937 36.000 0.00 0.00 0.00 0.98
5391 5897 7.155328 ACCCATTTGAGCGAGAGTAATAATAG 58.845 38.462 0.00 0.00 0.00 1.73
5392 5898 6.591834 CCCATTTGAGCGAGAGTAATAATAGG 59.408 42.308 0.00 0.00 0.00 2.57
5393 5899 7.378966 CCATTTGAGCGAGAGTAATAATAGGA 58.621 38.462 0.00 0.00 0.00 2.94
5394 5900 8.037758 CCATTTGAGCGAGAGTAATAATAGGAT 58.962 37.037 0.00 0.00 0.00 3.24
5395 5901 8.867935 CATTTGAGCGAGAGTAATAATAGGATG 58.132 37.037 0.00 0.00 0.00 3.51
5396 5902 6.516739 TGAGCGAGAGTAATAATAGGATGG 57.483 41.667 0.00 0.00 0.00 3.51
5397 5903 5.419155 TGAGCGAGAGTAATAATAGGATGGG 59.581 44.000 0.00 0.00 0.00 4.00
5398 5904 5.334421 AGCGAGAGTAATAATAGGATGGGT 58.666 41.667 0.00 0.00 0.00 4.51
5399 5905 5.186021 AGCGAGAGTAATAATAGGATGGGTG 59.814 44.000 0.00 0.00 0.00 4.61
5400 5906 5.185249 GCGAGAGTAATAATAGGATGGGTGA 59.815 44.000 0.00 0.00 0.00 4.02
5401 5907 6.622549 CGAGAGTAATAATAGGATGGGTGAC 58.377 44.000 0.00 0.00 0.00 3.67
5413 5919 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
5414 5920 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
5415 5921 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
5416 5922 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
5417 5923 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
5418 5924 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
5419 5925 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
5420 5926 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
5421 5927 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
5422 5928 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
5423 5929 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
5424 5930 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
5425 5931 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
5426 5932 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
5427 5933 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
5428 5934 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
5429 5935 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
5430 5936 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
5431 5937 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
5442 5948 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
5443 5949 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
5444 5950 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
5445 5951 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
5446 5952 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
5447 5953 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
5448 5954 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
5449 5955 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
5450 5956 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
5451 5957 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
5452 5958 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
5453 5959 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
5454 5960 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
5455 5961 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
5456 5962 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
5457 5963 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
5458 5964 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
5459 5965 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
5460 5966 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
5471 5977 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
5472 5978 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
5473 5979 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
5474 5980 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
5475 5981 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
5476 5982 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
5477 5983 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
5478 5984 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
5479 5985 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
5480 5986 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
5481 5987 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
5482 5988 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
5483 5989 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
5484 5990 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
5485 5991 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
5486 5992 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
5487 5993 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
5488 5994 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
5489 5995 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
5491 5997 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
5492 5998 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
5493 5999 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
5494 6000 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
5495 6001 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
5496 6002 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
5497 6003 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
5498 6004 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
5518 6024 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
5519 6025 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
5520 6026 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
5521 6027 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
5522 6028 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
5523 6029 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
5524 6030 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
5525 6031 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
5526 6032 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
5527 6033 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
5528 6034 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
5529 6035 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
5530 6036 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
5531 6037 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
5543 6049 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
5544 6050 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
5545 6051 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
5546 6052 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
5547 6053 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
5548 6054 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
5549 6055 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
5550 6056 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
5551 6057 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
5552 6058 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
5553 6059 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
5554 6060 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
5555 6061 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
5556 6062 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
5557 6063 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
5558 6064 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
5559 6065 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
5560 6066 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
5561 6067 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
5571 6077 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
5573 6079 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
5574 6080 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
5575 6081 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
5576 6082 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
5577 6083 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
5578 6084 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
5579 6085 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
5580 6086 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
5581 6087 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
5582 6088 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
5583 6089 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
5584 6090 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
5585 6091 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
5586 6092 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
5598 6104 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
5599 6105 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
5600 6106 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
5601 6107 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
5602 6108 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
5603 6109 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
5604 6110 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
5605 6111 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
5606 6112 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
5607 6113 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
5608 6114 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
5609 6115 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
5610 6116 5.007430 GGGATAAAAGGCTTCGTAAGTAAGC 59.993 44.000 0.00 0.00 44.34 3.09
5611 6117 5.276726 GGATAAAAGGCTTCGTAAGTAAGCG 60.277 44.000 0.00 0.00 45.28 4.68
5612 6118 2.738013 AAGGCTTCGTAAGTAAGCGT 57.262 45.000 0.00 0.00 45.28 5.07
5613 6119 3.855689 AAGGCTTCGTAAGTAAGCGTA 57.144 42.857 0.00 0.00 45.28 4.42
5614 6120 3.855689 AGGCTTCGTAAGTAAGCGTAA 57.144 42.857 1.54 0.00 45.28 3.18
5615 6121 4.178545 AGGCTTCGTAAGTAAGCGTAAA 57.821 40.909 1.54 0.00 45.28 2.01
5616 6122 4.559153 AGGCTTCGTAAGTAAGCGTAAAA 58.441 39.130 1.54 0.00 45.28 1.52
5885 6398 7.215085 TGTGATGTCCTCTAATTCATCATCAG 58.785 38.462 8.09 0.00 44.98 2.90
5891 6404 7.984050 TGTCCTCTAATTCATCATCAGTTCTTC 59.016 37.037 0.00 0.00 0.00 2.87
5892 6405 7.984050 GTCCTCTAATTCATCATCAGTTCTTCA 59.016 37.037 0.00 0.00 0.00 3.02
6359 6878 6.998074 TCCATGTTATTCCATCCACTTCATAC 59.002 38.462 0.00 0.00 0.00 2.39
7102 7621 2.299013 TGTGCCTATTCTTGACTGACGT 59.701 45.455 0.00 0.00 0.00 4.34
7174 7720 7.164171 CGCTGTACAATATTGTTTCAACTATGC 59.836 37.037 25.31 19.20 42.35 3.14
7701 8259 3.949754 GCTGATCATCTTGGTTTCCATCA 59.050 43.478 0.00 0.00 31.53 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 134 9.044150 TCTTGGATTTTGTTTGATCATGTTTTC 57.956 29.630 0.00 0.00 0.00 2.29
135 140 9.431887 CAGATTTCTTGGATTTTGTTTGATCAT 57.568 29.630 0.00 0.00 0.00 2.45
180 185 8.782144 TGCAATATGCTCGAACATTTGATATAA 58.218 29.630 19.05 0.00 45.31 0.98
292 348 7.631377 GCCAAAAATAACATATGTGGAGCTCTT 60.631 37.037 14.64 0.00 0.00 2.85
318 374 6.092670 TGTTCGAGCTCCTCATAATTTTTCAG 59.907 38.462 8.47 0.00 0.00 3.02
329 385 3.264947 CATCAAATGTTCGAGCTCCTCA 58.735 45.455 8.47 5.39 0.00 3.86
330 386 3.265791 ACATCAAATGTTCGAGCTCCTC 58.734 45.455 8.47 0.00 41.63 3.71
387 443 9.063615 ACTACAACCGAGTTTGAAAAATAAGAT 57.936 29.630 0.00 0.00 0.00 2.40
388 444 8.441312 ACTACAACCGAGTTTGAAAAATAAGA 57.559 30.769 0.00 0.00 0.00 2.10
389 445 9.590088 GTACTACAACCGAGTTTGAAAAATAAG 57.410 33.333 0.00 0.00 0.00 1.73
390 446 9.107177 TGTACTACAACCGAGTTTGAAAAATAA 57.893 29.630 0.00 0.00 0.00 1.40
391 447 8.550376 GTGTACTACAACCGAGTTTGAAAAATA 58.450 33.333 0.00 0.00 0.00 1.40
392 448 7.412063 GTGTACTACAACCGAGTTTGAAAAAT 58.588 34.615 0.00 0.00 0.00 1.82
393 449 6.183360 GGTGTACTACAACCGAGTTTGAAAAA 60.183 38.462 0.00 0.00 26.97 1.94
394 450 5.294060 GGTGTACTACAACCGAGTTTGAAAA 59.706 40.000 0.00 0.00 26.97 2.29
395 451 4.810491 GGTGTACTACAACCGAGTTTGAAA 59.190 41.667 0.00 0.00 26.97 2.69
396 452 4.370917 GGTGTACTACAACCGAGTTTGAA 58.629 43.478 0.00 0.00 26.97 2.69
439 495 6.766429 ACTTTCCTTTACTCTCGGTGTAATT 58.234 36.000 0.00 0.00 31.13 1.40
446 502 3.194968 TGGCTACTTTCCTTTACTCTCGG 59.805 47.826 0.00 0.00 0.00 4.63
454 510 4.082136 CGAGAGTAGTGGCTACTTTCCTTT 60.082 45.833 8.46 0.00 45.90 3.11
540 597 6.402550 GCAAGAAGCTCGAACATTTGATAAGA 60.403 38.462 0.00 0.00 41.15 2.10
583 640 0.321996 GAGAGCTCCTCCGGTTGTTT 59.678 55.000 10.93 0.00 35.87 2.83
586 643 1.216710 GTGAGAGCTCCTCCGGTTG 59.783 63.158 10.93 0.00 41.25 3.77
588 645 0.331954 TTAGTGAGAGCTCCTCCGGT 59.668 55.000 10.93 0.00 41.25 5.28
589 646 1.475403 TTTAGTGAGAGCTCCTCCGG 58.525 55.000 10.93 0.00 41.25 5.14
591 648 2.234908 TGCTTTTAGTGAGAGCTCCTCC 59.765 50.000 10.93 0.37 41.25 4.30
592 649 3.601443 TGCTTTTAGTGAGAGCTCCTC 57.399 47.619 10.93 8.11 42.30 3.71
690 748 1.878953 ACAACGGAAAGTAGCCACTG 58.121 50.000 0.00 0.00 34.36 3.66
708 766 2.349155 CCGTGACCGTGAAAGCTAAAAC 60.349 50.000 0.00 0.00 0.00 2.43
754 814 2.909965 TGTGCAAAGCCCGAACCC 60.910 61.111 0.00 0.00 0.00 4.11
801 861 1.068588 GGGCTTTTCTCGGTGCTTTTT 59.931 47.619 0.00 0.00 0.00 1.94
802 862 0.673985 GGGCTTTTCTCGGTGCTTTT 59.326 50.000 0.00 0.00 0.00 2.27
803 863 1.179174 GGGGCTTTTCTCGGTGCTTT 61.179 55.000 0.00 0.00 0.00 3.51
804 864 1.603739 GGGGCTTTTCTCGGTGCTT 60.604 57.895 0.00 0.00 0.00 3.91
805 865 2.034221 GGGGCTTTTCTCGGTGCT 59.966 61.111 0.00 0.00 0.00 4.40
806 866 3.431725 CGGGGCTTTTCTCGGTGC 61.432 66.667 0.00 0.00 0.00 5.01
807 867 2.032071 ACGGGGCTTTTCTCGGTG 59.968 61.111 0.00 0.00 0.00 4.94
808 868 2.032071 CACGGGGCTTTTCTCGGT 59.968 61.111 0.00 0.00 0.00 4.69
809 869 3.431725 GCACGGGGCTTTTCTCGG 61.432 66.667 0.00 0.00 40.25 4.63
810 870 3.431725 GGCACGGGGCTTTTCTCG 61.432 66.667 2.81 0.00 44.01 4.04
811 871 3.062466 GGGCACGGGGCTTTTCTC 61.062 66.667 12.43 0.00 44.01 2.87
812 872 3.897122 TGGGCACGGGGCTTTTCT 61.897 61.111 12.43 0.00 44.01 2.52
813 873 3.680786 GTGGGCACGGGGCTTTTC 61.681 66.667 12.43 0.00 44.01 2.29
861 924 3.687321 CTGACATGCGGGACCAGGG 62.687 68.421 0.00 0.00 0.00 4.45
896 959 1.098712 GTGGGCGGTGAAAAGTGACA 61.099 55.000 0.00 0.00 0.00 3.58
914 977 1.202940 GGAGAAGGCTGGTTTTCCTGT 60.203 52.381 0.00 0.00 40.42 4.00
942 1009 2.493973 GAGGAGACAGCGAGCCAG 59.506 66.667 0.00 0.00 0.00 4.85
1407 1482 7.872483 ACCAGCAAAATCAGTAACCATTTTAAG 59.128 33.333 0.00 0.00 32.18 1.85
1478 1553 0.035630 AGACTTGCAGGTCATCCAGC 60.036 55.000 28.25 2.67 44.86 4.85
1484 1559 1.656587 ACCCATAGACTTGCAGGTCA 58.343 50.000 28.25 15.77 38.57 4.02
1502 1577 6.094061 GGACAGAGTGTAGTCATAGTCAAAC 58.906 44.000 0.00 0.00 36.50 2.93
1505 1580 4.263771 TGGGACAGAGTGTAGTCATAGTCA 60.264 45.833 0.00 0.00 36.50 3.41
1514 1589 3.018149 GGAGTAGTGGGACAGAGTGTAG 58.982 54.545 0.00 0.00 41.80 2.74
1520 1595 0.323178 GGTCGGAGTAGTGGGACAGA 60.323 60.000 0.00 0.00 41.80 3.41
1526 1601 1.890894 CAGGTGGTCGGAGTAGTGG 59.109 63.158 0.00 0.00 0.00 4.00
1604 1679 7.621832 TGCAATAAAAAGAACATCAAGAACG 57.378 32.000 0.00 0.00 0.00 3.95
1615 1690 7.444792 ACCAATCAAGCAATGCAATAAAAAGAA 59.555 29.630 8.35 0.00 0.00 2.52
1682 1757 2.697654 ACTTCAGCTGCACAGAGAATC 58.302 47.619 9.47 0.00 0.00 2.52
1909 1984 4.624015 CAACCAATCACATATGGAATGGC 58.376 43.478 19.95 0.00 39.12 4.40
1945 2020 6.347696 TGTCCAAGCTTGAATTCAACAATTT 58.652 32.000 28.05 6.38 31.94 1.82
1946 2021 5.916318 TGTCCAAGCTTGAATTCAACAATT 58.084 33.333 28.05 8.96 34.70 2.32
1948 2023 4.998671 TGTCCAAGCTTGAATTCAACAA 57.001 36.364 28.05 0.00 0.00 2.83
1972 2047 6.922957 GTCTGCATTTAACTTCAAAATCACCA 59.077 34.615 0.00 0.00 0.00 4.17
2422 2568 9.383519 CAAAACTGTGTATGAATATCCTACAGT 57.616 33.333 0.00 0.00 46.34 3.55
2443 2589 7.148407 ACGAGAATTATCAGACACATCCAAAAC 60.148 37.037 0.35 0.00 0.00 2.43
2538 2684 4.333649 GTGTTTTATAAACGACCTAGGGCC 59.666 45.833 14.81 0.00 0.00 5.80
2562 2708 2.425312 ACTGAGTGCAGGATAACTCTCG 59.575 50.000 4.62 0.00 46.60 4.04
2638 2784 2.240667 AGGCATGCCTGTAGAAATGAGT 59.759 45.455 38.23 9.65 46.22 3.41
2723 2869 2.004583 TCGCTTGGTTTACATCCTCG 57.995 50.000 0.00 0.00 0.00 4.63
3077 3369 6.913170 ACATGACCACATAAAAGAATGTCAC 58.087 36.000 0.00 0.00 38.01 3.67
3111 3403 7.118971 GGCAATGGTTTTAAAGTTGCATTGATA 59.881 33.333 20.83 0.00 45.07 2.15
3112 3404 6.072563 GGCAATGGTTTTAAAGTTGCATTGAT 60.073 34.615 20.83 0.00 45.07 2.57
3298 3591 3.693085 ACTATGCATGGAGAAAGCACAAG 59.307 43.478 17.90 0.00 41.60 3.16
3386 3679 7.776969 TCAAGGCAGCATAAAAATCTCTTCTAT 59.223 33.333 0.00 0.00 0.00 1.98
3451 3744 7.499321 TGAAGAATTTGCATGCAGAAAATTT 57.501 28.000 23.06 14.64 34.51 1.82
3527 3820 6.129393 CGAGAATGGCAGAACAAAATATACG 58.871 40.000 0.00 0.00 0.00 3.06
3559 3852 1.967779 TGGAACAACCGTCTCATGAGA 59.032 47.619 21.67 21.67 42.61 3.27
3597 3890 2.627699 TGGCCAAAGGAAGAAATCACAC 59.372 45.455 0.61 0.00 0.00 3.82
3606 3899 4.085009 AGAAGAAGAATGGCCAAAGGAAG 58.915 43.478 10.96 0.00 0.00 3.46
3609 3902 2.757314 GGAGAAGAAGAATGGCCAAAGG 59.243 50.000 10.96 0.00 0.00 3.11
3612 3905 3.744940 ATGGAGAAGAAGAATGGCCAA 57.255 42.857 10.96 0.00 0.00 4.52
3626 3919 8.946085 GTAAAGTTGACAATATGTGAATGGAGA 58.054 33.333 0.00 0.00 0.00 3.71
3627 3920 8.184192 GGTAAAGTTGACAATATGTGAATGGAG 58.816 37.037 0.00 0.00 0.00 3.86
3628 3921 7.888021 AGGTAAAGTTGACAATATGTGAATGGA 59.112 33.333 0.00 0.00 0.00 3.41
3635 3928 6.539173 TGGACAGGTAAAGTTGACAATATGT 58.461 36.000 0.00 0.00 0.00 2.29
4074 4538 9.388506 GAGGAAATTGATACTTCTTCAGATTCA 57.611 33.333 0.00 0.00 30.31 2.57
4093 4557 7.238514 AGCTGGGTGAACATATATAGAGGAAAT 59.761 37.037 0.00 0.00 0.00 2.17
4188 4652 7.482428 GCAAATCACAAATCACCATTAAAATGC 59.518 33.333 0.00 0.00 35.08 3.56
4194 4658 5.384063 ACGCAAATCACAAATCACCATTA 57.616 34.783 0.00 0.00 0.00 1.90
4199 4663 3.603770 GCAGTACGCAAATCACAAATCAC 59.396 43.478 5.07 0.00 41.79 3.06
4200 4664 3.820689 GCAGTACGCAAATCACAAATCA 58.179 40.909 5.07 0.00 41.79 2.57
4244 4708 8.353423 ACTAAAAATGCAACAGATGAACCTAT 57.647 30.769 0.00 0.00 0.00 2.57
4353 4817 5.520748 AGTGTGAAAGGGATCAGGTTATT 57.479 39.130 0.00 0.00 0.00 1.40
4575 5041 3.615614 CTTATACGTCACGGACTACTGC 58.384 50.000 0.35 0.00 0.00 4.40
4629 5095 6.316390 CCTGAAGTCAAGCCGTAAAATCTTAT 59.684 38.462 0.00 0.00 0.00 1.73
4732 5198 3.531538 ACGCTGTTGAAAGAGAAACTCA 58.468 40.909 0.00 0.00 32.06 3.41
4752 5218 0.729116 ATGCGCATGACAGTAGCAAC 59.271 50.000 24.69 0.00 41.37 4.17
4819 5285 3.295304 TTGCCGCTAGCTCGAGCAA 62.295 57.895 36.87 19.77 42.99 3.91
5054 5528 1.005450 GGAAAGGGCCAGATGGTGTAA 59.995 52.381 6.18 0.00 37.57 2.41
5104 5578 6.145209 GCAATCTACTATACAGCTGTGATGTG 59.855 42.308 29.57 19.32 32.02 3.21
5202 5676 6.305693 AGAGAGAAAAATGAAACCAGTTCG 57.694 37.500 0.00 0.00 39.30 3.95
5240 5746 5.044105 AGGACTATTGGCCCTTCAAAATACT 60.044 40.000 0.00 0.00 0.00 2.12
5258 5764 5.946972 GCTATGCCTAGAAGACATAGGACTA 59.053 44.000 16.76 0.00 42.15 2.59
5259 5765 4.770010 GCTATGCCTAGAAGACATAGGACT 59.230 45.833 16.76 0.00 42.15 3.85
5260 5766 4.081917 GGCTATGCCTAGAAGACATAGGAC 60.082 50.000 16.76 7.22 46.69 3.85
5261 5767 4.090090 GGCTATGCCTAGAAGACATAGGA 58.910 47.826 16.76 0.00 46.69 2.94
5262 5768 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
5275 5781 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
5276 5782 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
5277 5783 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
5278 5784 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
5288 5794 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
5289 5795 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
5290 5796 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
5291 5797 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
5292 5798 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
5293 5799 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
5294 5800 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
5295 5801 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
5296 5802 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
5297 5803 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
5298 5804 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
5299 5805 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
5300 5806 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
5301 5807 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
5302 5808 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
5303 5809 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
5304 5810 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
5305 5811 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
5306 5812 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
5307 5813 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
5308 5814 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
5309 5815 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
5310 5816 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
5311 5817 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
5312 5818 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
5313 5819 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
5314 5820 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
5324 5830 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
5325 5831 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
5326 5832 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
5327 5833 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
5328 5834 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
5329 5835 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
5330 5836 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
5331 5837 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
5332 5838 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
5333 5839 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
5334 5840 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
5335 5841 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
5336 5842 5.123936 CCTATGGGACTGGCTAGTTTTTAC 58.876 45.833 3.47 0.00 37.25 2.01
5337 5843 4.786454 ACCTATGGGACTGGCTAGTTTTTA 59.214 41.667 3.47 0.00 37.25 1.52
5338 5844 3.591977 ACCTATGGGACTGGCTAGTTTTT 59.408 43.478 3.47 0.00 37.25 1.94
5339 5845 3.054361 CACCTATGGGACTGGCTAGTTTT 60.054 47.826 3.47 0.00 37.25 2.43
5340 5846 2.505819 CACCTATGGGACTGGCTAGTTT 59.494 50.000 3.47 0.00 37.25 2.66
5341 5847 2.119495 CACCTATGGGACTGGCTAGTT 58.881 52.381 3.47 0.00 37.25 2.24
5342 5848 1.008449 ACACCTATGGGACTGGCTAGT 59.992 52.381 0.69 0.69 40.66 2.57
5343 5849 1.414181 CACACCTATGGGACTGGCTAG 59.586 57.143 0.25 0.00 36.25 3.42
5344 5850 1.007842 TCACACCTATGGGACTGGCTA 59.992 52.381 0.25 0.00 31.41 3.93
5345 5851 0.252696 TCACACCTATGGGACTGGCT 60.253 55.000 0.25 0.00 31.41 4.75
5346 5852 0.618458 TTCACACCTATGGGACTGGC 59.382 55.000 0.25 0.00 38.25 4.85
5347 5853 2.618045 GGTTTCACACCTATGGGACTGG 60.618 54.545 0.25 0.00 38.25 4.00
5348 5854 2.618045 GGGTTTCACACCTATGGGACTG 60.618 54.545 0.25 0.00 46.38 3.51
5349 5855 1.633945 GGGTTTCACACCTATGGGACT 59.366 52.381 0.25 0.00 46.38 3.85
5350 5856 1.353022 TGGGTTTCACACCTATGGGAC 59.647 52.381 0.25 0.00 46.38 4.46
5351 5857 1.748732 TGGGTTTCACACCTATGGGA 58.251 50.000 0.25 0.00 46.38 4.37
5352 5858 2.826674 ATGGGTTTCACACCTATGGG 57.173 50.000 0.00 0.00 45.02 4.00
5353 5859 4.085733 TCAAATGGGTTTCACACCTATGG 58.914 43.478 0.00 0.00 46.02 2.74
5354 5860 4.380867 GCTCAAATGGGTTTCACACCTATG 60.381 45.833 0.00 0.00 46.02 2.23
5356 5862 3.153919 GCTCAAATGGGTTTCACACCTA 58.846 45.455 0.00 0.00 46.38 3.08
5357 5863 1.963515 GCTCAAATGGGTTTCACACCT 59.036 47.619 0.00 0.00 46.38 4.00
5358 5864 1.335872 CGCTCAAATGGGTTTCACACC 60.336 52.381 0.00 0.00 46.46 4.16
5359 5865 1.606668 TCGCTCAAATGGGTTTCACAC 59.393 47.619 0.00 0.00 0.00 3.82
5360 5866 1.879380 CTCGCTCAAATGGGTTTCACA 59.121 47.619 0.00 0.00 0.00 3.58
5361 5867 2.151202 TCTCGCTCAAATGGGTTTCAC 58.849 47.619 0.00 0.00 0.00 3.18
5362 5868 2.224523 ACTCTCGCTCAAATGGGTTTCA 60.225 45.455 0.00 0.00 0.00 2.69
5363 5869 2.427506 ACTCTCGCTCAAATGGGTTTC 58.572 47.619 0.00 0.00 0.00 2.78
5364 5870 2.568623 ACTCTCGCTCAAATGGGTTT 57.431 45.000 0.00 0.00 0.00 3.27
5365 5871 3.695830 TTACTCTCGCTCAAATGGGTT 57.304 42.857 0.00 0.00 0.00 4.11
5366 5872 3.914426 ATTACTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
5367 5873 6.591834 CCTATTATTACTCTCGCTCAAATGGG 59.408 42.308 0.00 0.00 0.00 4.00
5368 5874 7.378966 TCCTATTATTACTCTCGCTCAAATGG 58.621 38.462 0.00 0.00 0.00 3.16
5369 5875 8.867935 CATCCTATTATTACTCTCGCTCAAATG 58.132 37.037 0.00 0.00 0.00 2.32
5370 5876 8.037758 CCATCCTATTATTACTCTCGCTCAAAT 58.962 37.037 0.00 0.00 0.00 2.32
5371 5877 7.378966 CCATCCTATTATTACTCTCGCTCAAA 58.621 38.462 0.00 0.00 0.00 2.69
5372 5878 6.071334 CCCATCCTATTATTACTCTCGCTCAA 60.071 42.308 0.00 0.00 0.00 3.02
5373 5879 5.419155 CCCATCCTATTATTACTCTCGCTCA 59.581 44.000 0.00 0.00 0.00 4.26
5374 5880 5.419471 ACCCATCCTATTATTACTCTCGCTC 59.581 44.000 0.00 0.00 0.00 5.03
5375 5881 5.186021 CACCCATCCTATTATTACTCTCGCT 59.814 44.000 0.00 0.00 0.00 4.93
5376 5882 5.185249 TCACCCATCCTATTATTACTCTCGC 59.815 44.000 0.00 0.00 0.00 5.03
5377 5883 6.350277 GGTCACCCATCCTATTATTACTCTCG 60.350 46.154 0.00 0.00 0.00 4.04
5378 5884 6.726764 AGGTCACCCATCCTATTATTACTCTC 59.273 42.308 0.00 0.00 31.66 3.20
5379 5885 6.635021 AGGTCACCCATCCTATTATTACTCT 58.365 40.000 0.00 0.00 31.66 3.24
5380 5886 6.070710 GGAGGTCACCCATCCTATTATTACTC 60.071 46.154 0.00 0.00 33.83 2.59
5381 5887 5.785940 GGAGGTCACCCATCCTATTATTACT 59.214 44.000 0.00 0.00 33.83 2.24
5382 5888 5.785940 AGGAGGTCACCCATCCTATTATTAC 59.214 44.000 2.60 0.00 36.91 1.89
5383 5889 5.785423 CAGGAGGTCACCCATCCTATTATTA 59.215 44.000 4.27 0.00 36.69 0.98
5384 5890 4.599241 CAGGAGGTCACCCATCCTATTATT 59.401 45.833 4.27 0.00 36.69 1.40
5385 5891 4.171234 CAGGAGGTCACCCATCCTATTAT 58.829 47.826 4.27 0.00 36.69 1.28
5386 5892 3.587498 CAGGAGGTCACCCATCCTATTA 58.413 50.000 4.27 0.00 36.69 0.98
5387 5893 2.412591 CAGGAGGTCACCCATCCTATT 58.587 52.381 4.27 0.00 36.69 1.73
5388 5894 1.415126 CCAGGAGGTCACCCATCCTAT 60.415 57.143 4.27 0.00 36.69 2.57
5389 5895 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
5390 5896 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
5391 5897 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
5392 5898 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
5393 5899 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
5394 5900 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
5395 5901 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
5396 5902 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
5399 5905 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
5400 5906 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
5401 5907 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
5402 5908 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
5403 5909 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
5404 5910 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
5405 5911 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
5406 5912 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
5407 5913 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
5408 5914 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
5409 5915 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
5410 5916 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
5411 5917 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
5412 5918 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
5420 5926 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
5421 5927 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
5422 5928 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
5423 5929 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
5424 5930 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
5425 5931 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
5426 5932 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
5427 5933 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
5428 5934 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
5429 5935 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
5430 5936 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
5431 5937 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
5432 5938 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
5433 5939 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
5434 5940 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
5435 5941 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
5436 5942 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
5437 5943 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
5438 5944 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
5439 5945 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
5440 5946 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
5441 5947 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
5442 5948 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
5443 5949 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
5444 5950 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
5454 5960 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
5455 5961 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
5456 5962 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
5457 5963 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
5458 5964 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
5459 5965 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
5460 5966 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
5461 5967 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
5462 5968 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
5463 5969 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
5464 5970 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
5465 5971 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
5466 5972 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
5467 5973 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
5468 5974 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
5469 5975 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
5470 5976 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
5471 5977 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
5472 5978 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
5473 5979 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
5474 5980 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
5475 5981 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
5476 5982 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
5477 5983 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
5498 6004 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
5499 6005 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
5500 6006 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
5501 6007 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
5502 6008 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
5503 6009 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
5504 6010 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
5505 6011 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
5506 6012 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
5507 6013 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
5508 6014 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
5509 6015 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
5510 6016 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
5511 6017 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
5512 6018 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
5513 6019 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
5514 6020 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
5515 6021 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
5516 6022 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
5517 6023 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
5518 6024 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
5519 6025 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
5520 6026 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
5521 6027 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
5522 6028 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
5523 6029 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
5524 6030 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
5525 6031 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
5526 6032 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
5529 6035 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
5530 6036 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
5531 6037 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
5532 6038 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
5533 6039 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
5534 6040 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
5535 6041 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
5536 6042 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
5537 6043 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
5538 6044 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
5539 6045 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
5540 6046 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
5541 6047 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
5542 6048 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
5550 6056 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
5551 6057 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
5552 6058 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
5553 6059 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
5554 6060 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
5555 6061 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
5556 6062 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
5557 6063 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
5558 6064 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
5559 6065 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
5560 6066 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
5561 6067 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
5562 6068 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
5563 6069 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
5564 6070 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
5565 6071 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
5566 6072 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
5567 6073 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
5576 6082 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
5577 6083 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
5578 6084 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
5579 6085 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
5580 6086 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
5581 6087 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
5582 6088 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
5583 6089 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
5584 6090 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
5585 6091 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
5586 6092 5.007430 GCTTACTTACGAAGCCTTTTATCCC 59.993 44.000 0.00 0.00 42.90 3.85
5587 6093 5.276726 CGCTTACTTACGAAGCCTTTTATCC 60.277 44.000 2.01 0.00 45.35 2.59
5588 6094 5.290400 ACGCTTACTTACGAAGCCTTTTATC 59.710 40.000 2.01 0.00 45.35 1.75
5589 6095 5.173664 ACGCTTACTTACGAAGCCTTTTAT 58.826 37.500 2.01 0.00 45.35 1.40
5590 6096 4.559153 ACGCTTACTTACGAAGCCTTTTA 58.441 39.130 2.01 0.00 45.35 1.52
5591 6097 3.396560 ACGCTTACTTACGAAGCCTTTT 58.603 40.909 2.01 0.00 45.35 2.27
5592 6098 3.036075 ACGCTTACTTACGAAGCCTTT 57.964 42.857 2.01 0.00 45.35 3.11
5593 6099 2.738013 ACGCTTACTTACGAAGCCTT 57.262 45.000 2.01 0.00 45.35 4.35
5594 6100 3.855689 TTACGCTTACTTACGAAGCCT 57.144 42.857 2.01 0.00 45.35 4.58
5595 6101 4.908966 TTTTACGCTTACTTACGAAGCC 57.091 40.909 2.01 0.00 45.35 4.35
5596 6102 7.008628 TGACTATTTTACGCTTACTTACGAAGC 59.991 37.037 0.00 0.00 44.80 3.86
5597 6103 8.385789 TGACTATTTTACGCTTACTTACGAAG 57.614 34.615 0.00 0.00 0.00 3.79
5598 6104 8.023128 ACTGACTATTTTACGCTTACTTACGAA 58.977 33.333 0.00 0.00 0.00 3.85
5599 6105 7.530010 ACTGACTATTTTACGCTTACTTACGA 58.470 34.615 0.00 0.00 0.00 3.43
5600 6106 7.731556 ACTGACTATTTTACGCTTACTTACG 57.268 36.000 0.00 0.00 0.00 3.18
5601 6107 9.559958 TGTACTGACTATTTTACGCTTACTTAC 57.440 33.333 0.00 0.00 0.00 2.34
5603 6109 9.649167 ATTGTACTGACTATTTTACGCTTACTT 57.351 29.630 0.00 0.00 0.00 2.24
5604 6110 9.649167 AATTGTACTGACTATTTTACGCTTACT 57.351 29.630 0.00 0.00 28.13 2.24
5605 6111 9.897349 GAATTGTACTGACTATTTTACGCTTAC 57.103 33.333 0.00 0.00 32.15 2.34
5606 6112 9.090692 GGAATTGTACTGACTATTTTACGCTTA 57.909 33.333 0.00 0.00 32.15 3.09
5607 6113 7.822822 AGGAATTGTACTGACTATTTTACGCTT 59.177 33.333 0.00 0.00 32.15 4.68
5608 6114 7.277981 CAGGAATTGTACTGACTATTTTACGCT 59.722 37.037 0.00 0.00 36.86 5.07
5609 6115 7.399523 CAGGAATTGTACTGACTATTTTACGC 58.600 38.462 0.00 0.00 36.86 4.42
5610 6116 7.465513 GCCAGGAATTGTACTGACTATTTTACG 60.466 40.741 0.00 0.00 36.86 3.18
5611 6117 7.553044 AGCCAGGAATTGTACTGACTATTTTAC 59.447 37.037 0.00 0.00 36.86 2.01
5612 6118 7.552687 CAGCCAGGAATTGTACTGACTATTTTA 59.447 37.037 0.00 0.00 36.86 1.52
5613 6119 6.375455 CAGCCAGGAATTGTACTGACTATTTT 59.625 38.462 0.00 0.00 36.86 1.82
5614 6120 5.882557 CAGCCAGGAATTGTACTGACTATTT 59.117 40.000 0.00 0.00 36.86 1.40
5615 6121 5.431765 CAGCCAGGAATTGTACTGACTATT 58.568 41.667 0.00 0.00 36.86 1.73
5616 6122 4.141620 CCAGCCAGGAATTGTACTGACTAT 60.142 45.833 0.00 0.00 41.22 2.12
5768 6274 4.222124 ACCTACTATTTTGCAGACCAGG 57.778 45.455 0.00 0.00 0.00 4.45
5885 6398 4.035675 ACAGCAGTGCTAAGTTTGAAGAAC 59.964 41.667 19.26 0.00 36.40 3.01
5891 6404 7.751732 TGATAATAACAGCAGTGCTAAGTTTG 58.248 34.615 21.72 11.36 36.40 2.93
5892 6405 7.921786 TGATAATAACAGCAGTGCTAAGTTT 57.078 32.000 21.72 14.30 36.40 2.66
6359 6878 4.082081 TCAGGCAATTTGATAAAGCACCAG 60.082 41.667 0.00 0.00 0.00 4.00
7174 7720 4.508124 GCCTGGATGTATTTAGAAGACACG 59.492 45.833 0.00 0.00 0.00 4.49
7837 8396 3.472652 TGCGCATTTTAGGAACGGATAT 58.527 40.909 5.66 0.00 0.00 1.63
7870 8429 5.220080 GCAATGTTGATTTGCACTGTATTCG 60.220 40.000 3.68 0.00 46.78 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.