Multiple sequence alignment - TraesCS5D01G228700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G228700 chr5D 100.000 6992 0 0 1 6992 336052296 336059287 0.000000e+00 12912.0
1 TraesCS5D01G228700 chr5D 84.689 209 23 6 452 658 27887141 27887342 4.280000e-47 200.0
2 TraesCS5D01G228700 chr5A 95.894 4189 123 20 2833 6992 437216324 437220492 0.000000e+00 6737.0
3 TraesCS5D01G228700 chr5A 93.312 1884 92 21 880 2751 437214027 437215888 0.000000e+00 2750.0
4 TraesCS5D01G228700 chr5A 78.912 294 49 11 371 657 535233004 535232717 3.330000e-43 187.0
5 TraesCS5D01G228700 chr5A 95.349 43 2 0 203 245 42138321 42138363 1.260000e-07 69.4
6 TraesCS5D01G228700 chr5B 95.105 2431 99 4 3631 6045 394016258 394018684 0.000000e+00 3812.0
7 TraesCS5D01G228700 chr5B 91.914 1991 120 23 849 2823 394012873 394014838 0.000000e+00 2747.0
8 TraesCS5D01G228700 chr5B 95.421 808 33 2 2833 3639 394015072 394015876 0.000000e+00 1284.0
9 TraesCS5D01G228700 chr5B 96.794 499 10 3 6494 6992 394019117 394019609 0.000000e+00 828.0
10 TraesCS5D01G228700 chr5B 91.799 378 17 9 6124 6488 394018708 394019084 1.340000e-141 514.0
11 TraesCS5D01G228700 chr5B 86.503 163 20 2 450 612 483951762 483951922 2.000000e-40 178.0
12 TraesCS5D01G228700 chr7A 84.266 286 33 9 330 609 116190275 116189996 1.160000e-67 268.0
13 TraesCS5D01G228700 chr3D 83.162 291 35 10 334 612 517012008 517011720 3.240000e-63 254.0
14 TraesCS5D01G228700 chr3D 80.556 180 22 10 359 528 179083200 179083024 7.360000e-25 126.0
15 TraesCS5D01G228700 chr7B 82.474 291 35 9 335 611 187779262 187779550 2.520000e-59 241.0
16 TraesCS5D01G228700 chr6D 82.230 287 34 11 340 610 91846737 91846452 1.520000e-56 231.0
17 TraesCS5D01G228700 chr2D 81.911 293 33 15 333 612 372174313 372174598 5.460000e-56 230.0
18 TraesCS5D01G228700 chr6A 81.102 254 28 20 352 595 552835167 552835410 1.200000e-42 185.0
19 TraesCS5D01G228700 chr6A 88.889 63 4 3 192 251 594607473 594607411 2.700000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G228700 chr5D 336052296 336059287 6991 False 12912.0 12912 100.0000 1 6992 1 chr5D.!!$F2 6991
1 TraesCS5D01G228700 chr5A 437214027 437220492 6465 False 4743.5 6737 94.6030 880 6992 2 chr5A.!!$F2 6112
2 TraesCS5D01G228700 chr5B 394012873 394019609 6736 False 1837.0 3812 94.2066 849 6992 5 chr5B.!!$F2 6143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 688 0.030638 GCGTGTTTTCTGTGCACCAT 59.969 50.0 15.69 0.00 0.00 3.55 F
837 838 0.109342 ACAAGACAGACCAAGGCCAG 59.891 55.0 5.01 0.00 0.00 4.85 F
838 839 0.109342 CAAGACAGACCAAGGCCAGT 59.891 55.0 5.01 0.00 0.00 4.00 F
1799 1806 0.178981 ACAGTGAAGCCAGGTGCATT 60.179 50.0 0.00 0.00 44.83 3.56 F
2439 2485 0.447406 TTGATGTCGAAATGCTGCGG 59.553 50.0 0.00 0.00 0.00 5.69 F
3900 4693 0.104487 TGCCCAAACAACTGCATGTG 59.896 50.0 0.00 0.00 32.81 3.21 F
5239 6067 0.321021 AGACTGTCCAGCTGAGCAAG 59.679 55.0 17.39 9.55 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2457 2503 0.035820 TTACACCAGACGGGCCATTC 60.036 55.000 4.39 0.00 42.05 2.67 R
2835 3235 0.458669 GCCCTCGAGTTCGTCCAATA 59.541 55.000 12.31 0.00 40.80 1.90 R
2898 3299 1.532437 GCACCTGCAAAAAGGAAATGC 59.468 47.619 0.00 0.00 40.02 3.56 R
3855 4648 0.394192 TGAACTGAGGTGGTCTGCAG 59.606 55.000 7.63 7.63 34.65 4.41 R
4113 4906 1.202510 TGTTGCAGTTTCATTGGCACC 60.203 47.619 0.00 0.00 35.74 5.01 R
5281 6109 0.390124 CAGCACCAAACCAAGCACAT 59.610 50.000 0.00 0.00 0.00 3.21 R
6545 7417 2.299013 TGTGCCTATTCTTGACTGACGT 59.701 45.455 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.373778 ACCCTAACTTTCACGAAATGTATTC 57.626 36.000 0.00 0.00 0.00 1.75
26 27 6.091713 ACCCTAACTTTCACGAAATGTATTCG 59.908 38.462 8.86 8.86 46.36 3.34
27 28 5.957796 CCTAACTTTCACGAAATGTATTCGC 59.042 40.000 10.20 0.00 44.98 4.70
28 29 3.986128 ACTTTCACGAAATGTATTCGCG 58.014 40.909 0.00 0.00 44.98 5.87
29 30 3.430895 ACTTTCACGAAATGTATTCGCGT 59.569 39.130 5.77 3.28 44.98 6.01
30 31 4.622313 ACTTTCACGAAATGTATTCGCGTA 59.378 37.500 5.77 0.00 44.98 4.42
31 32 4.488518 TTCACGAAATGTATTCGCGTAC 57.511 40.909 5.77 2.49 44.98 3.67
32 33 2.853594 TCACGAAATGTATTCGCGTACC 59.146 45.455 5.77 0.00 44.98 3.34
33 34 2.034339 CACGAAATGTATTCGCGTACCC 60.034 50.000 5.77 0.00 44.98 3.69
34 35 2.159198 ACGAAATGTATTCGCGTACCCT 60.159 45.455 5.77 0.00 44.98 4.34
35 36 3.066621 ACGAAATGTATTCGCGTACCCTA 59.933 43.478 5.77 0.00 44.98 3.53
36 37 4.043750 CGAAATGTATTCGCGTACCCTAA 58.956 43.478 5.77 0.00 35.05 2.69
37 38 4.503734 CGAAATGTATTCGCGTACCCTAAA 59.496 41.667 5.77 0.00 35.05 1.85
38 39 5.005586 CGAAATGTATTCGCGTACCCTAAAA 59.994 40.000 5.77 0.00 35.05 1.52
39 40 5.978934 AATGTATTCGCGTACCCTAAAAG 57.021 39.130 5.77 0.00 0.00 2.27
40 41 3.784338 TGTATTCGCGTACCCTAAAAGG 58.216 45.455 5.77 0.00 34.30 3.11
52 53 3.629142 CCTAAAAGGGTCCACTCGATT 57.371 47.619 0.00 0.00 0.00 3.34
53 54 4.748277 CCTAAAAGGGTCCACTCGATTA 57.252 45.455 0.00 0.00 0.00 1.75
54 55 5.291905 CCTAAAAGGGTCCACTCGATTAT 57.708 43.478 0.00 0.00 0.00 1.28
55 56 5.057149 CCTAAAAGGGTCCACTCGATTATG 58.943 45.833 0.00 0.00 0.00 1.90
56 57 4.569719 AAAAGGGTCCACTCGATTATGT 57.430 40.909 0.00 0.00 0.00 2.29
57 58 5.687166 AAAAGGGTCCACTCGATTATGTA 57.313 39.130 0.00 0.00 0.00 2.29
58 59 5.687166 AAAGGGTCCACTCGATTATGTAA 57.313 39.130 0.00 0.00 0.00 2.41
59 60 5.687166 AAGGGTCCACTCGATTATGTAAA 57.313 39.130 0.00 0.00 0.00 2.01
60 61 5.888982 AGGGTCCACTCGATTATGTAAAT 57.111 39.130 0.00 0.00 0.00 1.40
61 62 5.611374 AGGGTCCACTCGATTATGTAAATG 58.389 41.667 0.00 0.00 0.00 2.32
62 63 5.365605 AGGGTCCACTCGATTATGTAAATGA 59.634 40.000 0.00 0.00 0.00 2.57
63 64 5.696724 GGGTCCACTCGATTATGTAAATGAG 59.303 44.000 0.00 0.00 0.00 2.90
64 65 6.462487 GGGTCCACTCGATTATGTAAATGAGA 60.462 42.308 9.98 0.00 0.00 3.27
65 66 7.155328 GGTCCACTCGATTATGTAAATGAGAT 58.845 38.462 9.98 0.00 0.00 2.75
66 67 7.329717 GGTCCACTCGATTATGTAAATGAGATC 59.670 40.741 9.98 0.00 0.00 2.75
67 68 7.867909 GTCCACTCGATTATGTAAATGAGATCA 59.132 37.037 0.00 0.00 0.00 2.92
68 69 8.421002 TCCACTCGATTATGTAAATGAGATCAA 58.579 33.333 0.00 0.00 0.00 2.57
69 70 9.045223 CCACTCGATTATGTAAATGAGATCAAA 57.955 33.333 0.00 0.00 0.00 2.69
86 87 9.097257 TGAGATCAAAACTTCAATTTGTTTTCC 57.903 29.630 9.43 4.85 42.29 3.13
87 88 9.317936 GAGATCAAAACTTCAATTTGTTTTCCT 57.682 29.630 9.43 7.95 42.29 3.36
88 89 9.671279 AGATCAAAACTTCAATTTGTTTTCCTT 57.329 25.926 9.43 1.57 42.29 3.36
89 90 9.920826 GATCAAAACTTCAATTTGTTTTCCTTC 57.079 29.630 9.43 5.52 42.29 3.46
90 91 8.262715 TCAAAACTTCAATTTGTTTTCCTTCC 57.737 30.769 9.43 0.00 42.29 3.46
91 92 7.880195 TCAAAACTTCAATTTGTTTTCCTTCCA 59.120 29.630 9.43 0.00 42.29 3.53
92 93 8.676401 CAAAACTTCAATTTGTTTTCCTTCCAT 58.324 29.630 9.43 0.00 42.29 3.41
93 94 8.806429 AAACTTCAATTTGTTTTCCTTCCATT 57.194 26.923 0.00 0.00 33.21 3.16
94 95 9.898152 AAACTTCAATTTGTTTTCCTTCCATTA 57.102 25.926 0.00 0.00 33.21 1.90
95 96 9.898152 AACTTCAATTTGTTTTCCTTCCATTAA 57.102 25.926 0.00 0.00 0.00 1.40
96 97 9.546428 ACTTCAATTTGTTTTCCTTCCATTAAG 57.454 29.630 0.00 0.00 34.73 1.85
97 98 9.546428 CTTCAATTTGTTTTCCTTCCATTAAGT 57.454 29.630 0.00 0.00 32.89 2.24
98 99 9.541143 TTCAATTTGTTTTCCTTCCATTAAGTC 57.459 29.630 0.00 0.00 32.89 3.01
99 100 8.147704 TCAATTTGTTTTCCTTCCATTAAGTCC 58.852 33.333 0.00 0.00 32.89 3.85
100 101 7.610580 ATTTGTTTTCCTTCCATTAAGTCCA 57.389 32.000 0.00 0.00 32.89 4.02
101 102 7.425224 TTTGTTTTCCTTCCATTAAGTCCAA 57.575 32.000 0.00 0.00 32.89 3.53
102 103 7.610580 TTGTTTTCCTTCCATTAAGTCCAAT 57.389 32.000 0.00 0.00 32.89 3.16
103 104 6.991938 TGTTTTCCTTCCATTAAGTCCAATG 58.008 36.000 0.00 0.00 35.97 2.82
111 112 5.567138 CCATTAAGTCCAATGGTGTTCTC 57.433 43.478 0.00 0.00 46.68 2.87
112 113 5.256474 CCATTAAGTCCAATGGTGTTCTCT 58.744 41.667 0.00 0.00 46.68 3.10
113 114 6.414732 CCATTAAGTCCAATGGTGTTCTCTA 58.585 40.000 0.00 0.00 46.68 2.43
114 115 7.056635 CCATTAAGTCCAATGGTGTTCTCTAT 58.943 38.462 0.00 0.00 46.68 1.98
115 116 8.210946 CCATTAAGTCCAATGGTGTTCTCTATA 58.789 37.037 0.00 0.00 46.68 1.31
116 117 9.784531 CATTAAGTCCAATGGTGTTCTCTATAT 57.215 33.333 0.00 0.00 33.16 0.86
121 122 9.601810 AGTCCAATGGTGTTCTCTATATATACA 57.398 33.333 0.00 0.00 0.00 2.29
143 144 7.716799 ACATATATCTCCCTCACTCATTCTC 57.283 40.000 0.00 0.00 0.00 2.87
144 145 7.477864 ACATATATCTCCCTCACTCATTCTCT 58.522 38.462 0.00 0.00 0.00 3.10
145 146 7.615365 ACATATATCTCCCTCACTCATTCTCTC 59.385 40.741 0.00 0.00 0.00 3.20
146 147 3.025322 TCTCCCTCACTCATTCTCTCC 57.975 52.381 0.00 0.00 0.00 3.71
147 148 2.584965 TCTCCCTCACTCATTCTCTCCT 59.415 50.000 0.00 0.00 0.00 3.69
148 149 3.012274 TCTCCCTCACTCATTCTCTCCTT 59.988 47.826 0.00 0.00 0.00 3.36
149 150 4.230733 TCTCCCTCACTCATTCTCTCCTTA 59.769 45.833 0.00 0.00 0.00 2.69
150 151 4.282496 TCCCTCACTCATTCTCTCCTTAC 58.718 47.826 0.00 0.00 0.00 2.34
151 152 4.017037 TCCCTCACTCATTCTCTCCTTACT 60.017 45.833 0.00 0.00 0.00 2.24
152 153 4.340950 CCCTCACTCATTCTCTCCTTACTC 59.659 50.000 0.00 0.00 0.00 2.59
153 154 4.952957 CCTCACTCATTCTCTCCTTACTCA 59.047 45.833 0.00 0.00 0.00 3.41
154 155 5.163561 CCTCACTCATTCTCTCCTTACTCAC 60.164 48.000 0.00 0.00 0.00 3.51
155 156 5.325239 TCACTCATTCTCTCCTTACTCACA 58.675 41.667 0.00 0.00 0.00 3.58
156 157 5.954752 TCACTCATTCTCTCCTTACTCACAT 59.045 40.000 0.00 0.00 0.00 3.21
157 158 7.119387 TCACTCATTCTCTCCTTACTCACATA 58.881 38.462 0.00 0.00 0.00 2.29
158 159 7.615757 TCACTCATTCTCTCCTTACTCACATAA 59.384 37.037 0.00 0.00 0.00 1.90
159 160 8.420222 CACTCATTCTCTCCTTACTCACATAAT 58.580 37.037 0.00 0.00 0.00 1.28
160 161 9.647918 ACTCATTCTCTCCTTACTCACATAATA 57.352 33.333 0.00 0.00 0.00 0.98
277 278 8.726870 AAAATAGCATGGGAAGATTTTGAATG 57.273 30.769 0.00 0.00 30.56 2.67
278 279 4.748277 AGCATGGGAAGATTTTGAATGG 57.252 40.909 0.00 0.00 0.00 3.16
279 280 3.453353 AGCATGGGAAGATTTTGAATGGG 59.547 43.478 0.00 0.00 0.00 4.00
280 281 3.451902 GCATGGGAAGATTTTGAATGGGA 59.548 43.478 0.00 0.00 0.00 4.37
281 282 4.442472 GCATGGGAAGATTTTGAATGGGAG 60.442 45.833 0.00 0.00 0.00 4.30
282 283 3.711863 TGGGAAGATTTTGAATGGGAGG 58.288 45.455 0.00 0.00 0.00 4.30
283 284 3.033909 GGGAAGATTTTGAATGGGAGGG 58.966 50.000 0.00 0.00 0.00 4.30
284 285 3.309848 GGGAAGATTTTGAATGGGAGGGA 60.310 47.826 0.00 0.00 0.00 4.20
285 286 3.956848 GGAAGATTTTGAATGGGAGGGAG 59.043 47.826 0.00 0.00 0.00 4.30
286 287 4.570719 GGAAGATTTTGAATGGGAGGGAGT 60.571 45.833 0.00 0.00 0.00 3.85
287 288 5.340027 GGAAGATTTTGAATGGGAGGGAGTA 60.340 44.000 0.00 0.00 0.00 2.59
288 289 6.347061 AAGATTTTGAATGGGAGGGAGTAT 57.653 37.500 0.00 0.00 0.00 2.12
289 290 6.347061 AGATTTTGAATGGGAGGGAGTATT 57.653 37.500 0.00 0.00 0.00 1.89
290 291 7.465900 AGATTTTGAATGGGAGGGAGTATTA 57.534 36.000 0.00 0.00 0.00 0.98
291 292 7.290813 AGATTTTGAATGGGAGGGAGTATTAC 58.709 38.462 0.00 0.00 0.00 1.89
292 293 6.652205 TTTTGAATGGGAGGGAGTATTACT 57.348 37.500 0.00 0.00 0.00 2.24
293 294 5.888982 TTGAATGGGAGGGAGTATTACTC 57.111 43.478 14.34 14.34 44.32 2.59
307 308 7.555306 GAGTATTACTCCCAAATTTCTGGAC 57.445 40.000 12.06 0.00 39.28 4.02
308 309 7.027874 AGTATTACTCCCAAATTTCTGGACA 57.972 36.000 0.00 0.00 38.96 4.02
309 310 7.112779 AGTATTACTCCCAAATTTCTGGACAG 58.887 38.462 0.00 0.00 38.96 3.51
310 311 3.160679 ACTCCCAAATTTCTGGACAGG 57.839 47.619 0.00 0.00 38.96 4.00
311 312 2.716424 ACTCCCAAATTTCTGGACAGGA 59.284 45.455 0.00 0.00 38.96 3.86
312 313 3.140144 ACTCCCAAATTTCTGGACAGGAA 59.860 43.478 0.00 0.00 38.96 3.36
313 314 3.496331 TCCCAAATTTCTGGACAGGAAC 58.504 45.455 0.00 0.00 38.96 3.62
314 315 2.228822 CCCAAATTTCTGGACAGGAACG 59.771 50.000 0.00 0.00 38.96 3.95
315 316 2.884639 CCAAATTTCTGGACAGGAACGT 59.115 45.455 0.00 0.00 38.96 3.99
316 317 3.317993 CCAAATTTCTGGACAGGAACGTT 59.682 43.478 0.00 0.00 38.96 3.99
317 318 4.202111 CCAAATTTCTGGACAGGAACGTTT 60.202 41.667 0.46 0.00 38.96 3.60
318 319 4.568152 AATTTCTGGACAGGAACGTTTG 57.432 40.909 0.46 0.00 0.00 2.93
319 320 1.961793 TTCTGGACAGGAACGTTTGG 58.038 50.000 0.46 0.00 0.00 3.28
320 321 0.834612 TCTGGACAGGAACGTTTGGT 59.165 50.000 0.46 0.70 0.00 3.67
321 322 1.202604 TCTGGACAGGAACGTTTGGTC 60.203 52.381 0.46 10.50 0.00 4.02
322 323 0.834612 TGGACAGGAACGTTTGGTCT 59.165 50.000 20.07 7.79 0.00 3.85
323 324 2.036733 CTGGACAGGAACGTTTGGTCTA 59.963 50.000 20.07 15.85 0.00 2.59
324 325 2.635915 TGGACAGGAACGTTTGGTCTAT 59.364 45.455 20.07 1.58 0.00 1.98
325 326 3.000727 GGACAGGAACGTTTGGTCTATG 58.999 50.000 20.07 7.94 0.00 2.23
326 327 3.000727 GACAGGAACGTTTGGTCTATGG 58.999 50.000 0.46 0.00 0.00 2.74
327 328 2.370849 ACAGGAACGTTTGGTCTATGGT 59.629 45.455 0.46 0.00 0.00 3.55
328 329 3.000727 CAGGAACGTTTGGTCTATGGTC 58.999 50.000 0.46 0.00 0.00 4.02
329 330 2.904434 AGGAACGTTTGGTCTATGGTCT 59.096 45.455 0.46 0.00 0.00 3.85
330 331 4.081862 CAGGAACGTTTGGTCTATGGTCTA 60.082 45.833 0.46 0.00 0.00 2.59
331 332 4.715297 AGGAACGTTTGGTCTATGGTCTAT 59.285 41.667 0.46 0.00 0.00 1.98
332 333 4.809426 GGAACGTTTGGTCTATGGTCTATG 59.191 45.833 0.46 0.00 0.00 2.23
333 334 5.394883 GGAACGTTTGGTCTATGGTCTATGA 60.395 44.000 0.46 0.00 0.00 2.15
334 335 5.670792 ACGTTTGGTCTATGGTCTATGAA 57.329 39.130 0.00 0.00 0.00 2.57
335 336 6.045072 ACGTTTGGTCTATGGTCTATGAAA 57.955 37.500 0.00 0.00 0.00 2.69
336 337 6.469410 ACGTTTGGTCTATGGTCTATGAAAA 58.531 36.000 0.00 0.00 0.00 2.29
337 338 6.938030 ACGTTTGGTCTATGGTCTATGAAAAA 59.062 34.615 0.00 0.00 0.00 1.94
404 405 9.883142 TTTGAAATAAACTTGACCTTTCATTGT 57.117 25.926 0.00 0.00 36.17 2.71
435 436 5.950758 AAAACACAAAAACAAAGAACCCC 57.049 34.783 0.00 0.00 0.00 4.95
436 437 3.239587 ACACAAAAACAAAGAACCCCG 57.760 42.857 0.00 0.00 0.00 5.73
437 438 2.563620 ACACAAAAACAAAGAACCCCGT 59.436 40.909 0.00 0.00 0.00 5.28
438 439 3.007074 ACACAAAAACAAAGAACCCCGTT 59.993 39.130 0.00 0.00 0.00 4.44
439 440 3.369451 CACAAAAACAAAGAACCCCGTTG 59.631 43.478 0.00 0.00 39.62 4.10
440 441 3.258622 ACAAAAACAAAGAACCCCGTTGA 59.741 39.130 0.00 0.00 37.62 3.18
441 442 3.513680 AAAACAAAGAACCCCGTTGAC 57.486 42.857 0.00 0.00 37.62 3.18
442 443 2.131776 AACAAAGAACCCCGTTGACA 57.868 45.000 0.00 0.00 37.62 3.58
443 444 2.358322 ACAAAGAACCCCGTTGACAT 57.642 45.000 0.00 0.00 37.62 3.06
444 445 2.661718 ACAAAGAACCCCGTTGACATT 58.338 42.857 0.00 0.00 37.62 2.71
445 446 3.028130 ACAAAGAACCCCGTTGACATTT 58.972 40.909 0.00 0.00 37.62 2.32
446 447 3.449377 ACAAAGAACCCCGTTGACATTTT 59.551 39.130 0.00 0.00 37.62 1.82
447 448 4.081365 ACAAAGAACCCCGTTGACATTTTT 60.081 37.500 0.00 0.00 37.62 1.94
479 480 8.816640 AAAAACAGCCAAAATAGTGTGAATAG 57.183 30.769 0.00 0.00 0.00 1.73
480 481 7.524717 AAACAGCCAAAATAGTGTGAATAGT 57.475 32.000 0.00 0.00 0.00 2.12
481 482 6.500684 ACAGCCAAAATAGTGTGAATAGTG 57.499 37.500 0.00 0.00 0.00 2.74
482 483 6.237901 ACAGCCAAAATAGTGTGAATAGTGA 58.762 36.000 0.00 0.00 0.00 3.41
483 484 6.149474 ACAGCCAAAATAGTGTGAATAGTGAC 59.851 38.462 0.00 0.00 0.00 3.67
484 485 6.372659 CAGCCAAAATAGTGTGAATAGTGACT 59.627 38.462 0.00 0.00 0.00 3.41
485 486 6.942576 AGCCAAAATAGTGTGAATAGTGACTT 59.057 34.615 0.00 0.00 0.00 3.01
486 487 8.100791 AGCCAAAATAGTGTGAATAGTGACTTA 58.899 33.333 0.00 0.00 0.00 2.24
487 488 8.893727 GCCAAAATAGTGTGAATAGTGACTTAT 58.106 33.333 0.00 0.00 0.00 1.73
493 494 9.751542 ATAGTGTGAATAGTGACTTATAACAGC 57.248 33.333 0.00 0.00 0.00 4.40
494 495 7.611770 AGTGTGAATAGTGACTTATAACAGCA 58.388 34.615 0.00 0.00 0.00 4.41
495 496 8.094548 AGTGTGAATAGTGACTTATAACAGCAA 58.905 33.333 0.00 0.00 0.00 3.91
496 497 8.883731 GTGTGAATAGTGACTTATAACAGCAAT 58.116 33.333 0.00 0.00 0.00 3.56
519 520 4.830826 AAAAACATTCCCTGAAGTCGAC 57.169 40.909 7.70 7.70 0.00 4.20
520 521 2.080286 AACATTCCCTGAAGTCGACG 57.920 50.000 10.46 0.00 0.00 5.12
521 522 0.389948 ACATTCCCTGAAGTCGACGC 60.390 55.000 10.46 7.22 0.00 5.19
522 523 0.108615 CATTCCCTGAAGTCGACGCT 60.109 55.000 10.46 0.71 0.00 5.07
523 524 0.108615 ATTCCCTGAAGTCGACGCTG 60.109 55.000 10.46 10.20 0.00 5.18
524 525 2.125912 CCCTGAAGTCGACGCTGG 60.126 66.667 21.81 21.81 0.00 4.85
525 526 2.651361 CCTGAAGTCGACGCTGGT 59.349 61.111 21.02 4.42 0.00 4.00
526 527 1.006102 CCTGAAGTCGACGCTGGTT 60.006 57.895 21.02 7.72 0.00 3.67
527 528 0.600255 CCTGAAGTCGACGCTGGTTT 60.600 55.000 21.02 7.09 0.00 3.27
528 529 1.217882 CTGAAGTCGACGCTGGTTTT 58.782 50.000 10.46 0.00 0.00 2.43
529 530 1.597663 CTGAAGTCGACGCTGGTTTTT 59.402 47.619 10.46 0.00 0.00 1.94
571 572 9.726438 ATATACTAGTGCAAAAGAAAGTCAAGT 57.274 29.630 5.39 0.00 0.00 3.16
572 573 6.759497 ACTAGTGCAAAAGAAAGTCAAGTT 57.241 33.333 0.00 0.00 0.00 2.66
573 574 7.158099 ACTAGTGCAAAAGAAAGTCAAGTTT 57.842 32.000 0.00 0.00 0.00 2.66
574 575 8.276252 ACTAGTGCAAAAGAAAGTCAAGTTTA 57.724 30.769 0.00 0.00 0.00 2.01
575 576 8.903820 ACTAGTGCAAAAGAAAGTCAAGTTTAT 58.096 29.630 0.00 0.00 0.00 1.40
576 577 9.736023 CTAGTGCAAAAGAAAGTCAAGTTTATT 57.264 29.630 0.00 0.00 0.00 1.40
577 578 8.634475 AGTGCAAAAGAAAGTCAAGTTTATTC 57.366 30.769 0.00 0.00 0.00 1.75
578 579 8.470002 AGTGCAAAAGAAAGTCAAGTTTATTCT 58.530 29.630 0.00 0.00 31.98 2.40
579 580 9.730420 GTGCAAAAGAAAGTCAAGTTTATTCTA 57.270 29.630 0.00 0.00 30.56 2.10
648 649 6.889301 TGTATATACACCTAGGAACCGAAG 57.111 41.667 17.98 0.00 0.00 3.79
669 670 2.358957 GGCATTTCCCCAAATTTCTGC 58.641 47.619 0.00 0.00 28.97 4.26
670 671 2.001872 GCATTTCCCCAAATTTCTGCG 58.998 47.619 0.00 0.00 28.97 5.18
671 672 2.612721 GCATTTCCCCAAATTTCTGCGT 60.613 45.455 0.00 0.00 28.97 5.24
672 673 2.810439 TTTCCCCAAATTTCTGCGTG 57.190 45.000 0.00 0.00 0.00 5.34
673 674 1.698506 TTCCCCAAATTTCTGCGTGT 58.301 45.000 0.00 0.00 0.00 4.49
674 675 1.698506 TCCCCAAATTTCTGCGTGTT 58.301 45.000 0.00 0.00 0.00 3.32
675 676 2.035632 TCCCCAAATTTCTGCGTGTTT 58.964 42.857 0.00 0.00 0.00 2.83
676 677 2.432510 TCCCCAAATTTCTGCGTGTTTT 59.567 40.909 0.00 0.00 0.00 2.43
677 678 2.799978 CCCCAAATTTCTGCGTGTTTTC 59.200 45.455 0.00 0.00 0.00 2.29
678 679 3.492482 CCCCAAATTTCTGCGTGTTTTCT 60.492 43.478 0.00 0.00 0.00 2.52
679 680 3.490526 CCCAAATTTCTGCGTGTTTTCTG 59.509 43.478 0.00 0.00 0.00 3.02
680 681 4.111916 CCAAATTTCTGCGTGTTTTCTGT 58.888 39.130 0.00 0.00 0.00 3.41
681 682 4.026640 CCAAATTTCTGCGTGTTTTCTGTG 60.027 41.667 0.00 0.00 0.00 3.66
682 683 2.187351 TTTCTGCGTGTTTTCTGTGC 57.813 45.000 0.00 0.00 0.00 4.57
683 684 1.090728 TTCTGCGTGTTTTCTGTGCA 58.909 45.000 0.00 0.00 0.00 4.57
684 685 0.376852 TCTGCGTGTTTTCTGTGCAC 59.623 50.000 10.75 10.75 0.00 4.57
685 686 0.592247 CTGCGTGTTTTCTGTGCACC 60.592 55.000 15.69 0.00 0.00 5.01
686 687 1.308783 TGCGTGTTTTCTGTGCACCA 61.309 50.000 15.69 0.01 0.00 4.17
687 688 0.030638 GCGTGTTTTCTGTGCACCAT 59.969 50.000 15.69 0.00 0.00 3.55
688 689 1.925946 GCGTGTTTTCTGTGCACCATC 60.926 52.381 15.69 0.00 0.00 3.51
689 690 1.334960 CGTGTTTTCTGTGCACCATCC 60.335 52.381 15.69 0.00 0.00 3.51
690 691 1.680735 GTGTTTTCTGTGCACCATCCA 59.319 47.619 15.69 0.54 0.00 3.41
691 692 2.100584 GTGTTTTCTGTGCACCATCCAA 59.899 45.455 15.69 0.00 0.00 3.53
692 693 2.762887 TGTTTTCTGTGCACCATCCAAA 59.237 40.909 15.69 3.67 0.00 3.28
693 694 3.387374 TGTTTTCTGTGCACCATCCAAAT 59.613 39.130 15.69 0.00 0.00 2.32
694 695 3.663995 TTTCTGTGCACCATCCAAATG 57.336 42.857 15.69 0.00 0.00 2.32
695 696 0.889994 TCTGTGCACCATCCAAATGC 59.110 50.000 15.69 0.00 39.88 3.56
696 697 0.604073 CTGTGCACCATCCAAATGCA 59.396 50.000 15.69 0.00 46.73 3.96
700 701 3.523606 TGCACCATCCAAATGCATTAC 57.476 42.857 13.39 0.00 44.17 1.89
701 702 3.098377 TGCACCATCCAAATGCATTACT 58.902 40.909 13.39 0.00 44.17 2.24
702 703 3.514706 TGCACCATCCAAATGCATTACTT 59.485 39.130 13.39 0.00 44.17 2.24
703 704 4.114794 GCACCATCCAAATGCATTACTTC 58.885 43.478 13.39 0.00 39.23 3.01
704 705 4.142093 GCACCATCCAAATGCATTACTTCT 60.142 41.667 13.39 0.00 39.23 2.85
705 706 5.067674 GCACCATCCAAATGCATTACTTCTA 59.932 40.000 13.39 0.00 39.23 2.10
706 707 6.239120 GCACCATCCAAATGCATTACTTCTAT 60.239 38.462 13.39 0.00 39.23 1.98
707 708 7.040478 GCACCATCCAAATGCATTACTTCTATA 60.040 37.037 13.39 0.00 39.23 1.31
708 709 8.849168 CACCATCCAAATGCATTACTTCTATAA 58.151 33.333 13.39 0.00 0.00 0.98
709 710 9.592196 ACCATCCAAATGCATTACTTCTATAAT 57.408 29.630 13.39 0.00 0.00 1.28
755 756 7.398024 AGGGGATACTTATGTCTTCAATATGC 58.602 38.462 0.00 0.00 0.00 3.14
756 757 6.313905 GGGGATACTTATGTCTTCAATATGCG 59.686 42.308 0.00 0.00 0.00 4.73
757 758 6.874134 GGGATACTTATGTCTTCAATATGCGT 59.126 38.462 0.00 0.00 0.00 5.24
758 759 7.387948 GGGATACTTATGTCTTCAATATGCGTT 59.612 37.037 0.00 0.00 0.00 4.84
759 760 8.223769 GGATACTTATGTCTTCAATATGCGTTG 58.776 37.037 0.00 0.00 0.00 4.10
760 761 6.985188 ACTTATGTCTTCAATATGCGTTGT 57.015 33.333 0.00 0.00 0.00 3.32
761 762 6.775088 ACTTATGTCTTCAATATGCGTTGTG 58.225 36.000 0.00 0.00 0.00 3.33
762 763 6.371548 ACTTATGTCTTCAATATGCGTTGTGT 59.628 34.615 0.00 0.00 0.00 3.72
763 764 4.403015 TGTCTTCAATATGCGTTGTGTG 57.597 40.909 0.00 0.00 0.00 3.82
764 765 4.061596 TGTCTTCAATATGCGTTGTGTGA 58.938 39.130 0.00 0.00 0.00 3.58
765 766 4.152223 TGTCTTCAATATGCGTTGTGTGAG 59.848 41.667 0.00 0.00 0.00 3.51
766 767 4.152402 GTCTTCAATATGCGTTGTGTGAGT 59.848 41.667 0.00 0.00 0.00 3.41
767 768 4.152223 TCTTCAATATGCGTTGTGTGAGTG 59.848 41.667 0.00 0.00 0.00 3.51
768 769 3.398406 TCAATATGCGTTGTGTGAGTGT 58.602 40.909 0.00 0.00 0.00 3.55
769 770 3.431912 TCAATATGCGTTGTGTGAGTGTC 59.568 43.478 0.00 0.00 0.00 3.67
770 771 2.812358 TATGCGTTGTGTGAGTGTCT 57.188 45.000 0.00 0.00 0.00 3.41
771 772 2.812358 ATGCGTTGTGTGAGTGTCTA 57.188 45.000 0.00 0.00 0.00 2.59
772 773 2.812358 TGCGTTGTGTGAGTGTCTAT 57.188 45.000 0.00 0.00 0.00 1.98
773 774 2.403259 TGCGTTGTGTGAGTGTCTATG 58.597 47.619 0.00 0.00 0.00 2.23
774 775 2.223947 TGCGTTGTGTGAGTGTCTATGT 60.224 45.455 0.00 0.00 0.00 2.29
775 776 2.155732 GCGTTGTGTGAGTGTCTATGTG 59.844 50.000 0.00 0.00 0.00 3.21
776 777 2.731451 CGTTGTGTGAGTGTCTATGTGG 59.269 50.000 0.00 0.00 0.00 4.17
777 778 3.728845 GTTGTGTGAGTGTCTATGTGGT 58.271 45.455 0.00 0.00 0.00 4.16
778 779 3.385193 TGTGTGAGTGTCTATGTGGTG 57.615 47.619 0.00 0.00 0.00 4.17
779 780 2.069273 GTGTGAGTGTCTATGTGGTGC 58.931 52.381 0.00 0.00 0.00 5.01
780 781 1.970640 TGTGAGTGTCTATGTGGTGCT 59.029 47.619 0.00 0.00 0.00 4.40
781 782 2.289010 TGTGAGTGTCTATGTGGTGCTG 60.289 50.000 0.00 0.00 0.00 4.41
782 783 1.970640 TGAGTGTCTATGTGGTGCTGT 59.029 47.619 0.00 0.00 0.00 4.40
783 784 2.289010 TGAGTGTCTATGTGGTGCTGTG 60.289 50.000 0.00 0.00 0.00 3.66
784 785 1.970640 AGTGTCTATGTGGTGCTGTGA 59.029 47.619 0.00 0.00 0.00 3.58
785 786 2.028658 AGTGTCTATGTGGTGCTGTGAG 60.029 50.000 0.00 0.00 0.00 3.51
786 787 1.970640 TGTCTATGTGGTGCTGTGAGT 59.029 47.619 0.00 0.00 0.00 3.41
787 788 2.289010 TGTCTATGTGGTGCTGTGAGTG 60.289 50.000 0.00 0.00 0.00 3.51
788 789 1.970640 TCTATGTGGTGCTGTGAGTGT 59.029 47.619 0.00 0.00 0.00 3.55
789 790 2.071540 CTATGTGGTGCTGTGAGTGTG 58.928 52.381 0.00 0.00 0.00 3.82
790 791 0.181114 ATGTGGTGCTGTGAGTGTGT 59.819 50.000 0.00 0.00 0.00 3.72
791 792 0.827368 TGTGGTGCTGTGAGTGTGTA 59.173 50.000 0.00 0.00 0.00 2.90
792 793 1.217882 GTGGTGCTGTGAGTGTGTAC 58.782 55.000 0.00 0.00 0.00 2.90
793 794 0.249280 TGGTGCTGTGAGTGTGTACG 60.249 55.000 0.00 0.00 0.00 3.67
794 795 1.557443 GGTGCTGTGAGTGTGTACGC 61.557 60.000 0.00 0.00 0.00 4.42
795 796 1.660264 TGCTGTGAGTGTGTACGCG 60.660 57.895 3.53 3.53 0.00 6.01
796 797 1.660575 GCTGTGAGTGTGTACGCGT 60.661 57.895 19.17 19.17 0.00 6.01
797 798 1.606350 GCTGTGAGTGTGTACGCGTC 61.606 60.000 18.63 8.55 0.00 5.19
798 799 1.002250 CTGTGAGTGTGTACGCGTCC 61.002 60.000 18.63 4.27 0.00 4.79
799 800 2.078914 GTGAGTGTGTACGCGTCCG 61.079 63.158 18.63 0.00 41.14 4.79
810 811 3.267893 CGCGTCCGTTGTATGTTTG 57.732 52.632 0.00 0.00 0.00 2.93
811 812 0.509499 CGCGTCCGTTGTATGTTTGT 59.491 50.000 0.00 0.00 0.00 2.83
812 813 1.070443 CGCGTCCGTTGTATGTTTGTT 60.070 47.619 0.00 0.00 0.00 2.83
813 814 2.600320 CGCGTCCGTTGTATGTTTGTTT 60.600 45.455 0.00 0.00 0.00 2.83
814 815 2.717011 GCGTCCGTTGTATGTTTGTTTG 59.283 45.455 0.00 0.00 0.00 2.93
815 816 3.293262 CGTCCGTTGTATGTTTGTTTGG 58.707 45.455 0.00 0.00 0.00 3.28
816 817 3.002451 CGTCCGTTGTATGTTTGTTTGGA 59.998 43.478 0.00 0.00 0.00 3.53
817 818 4.284485 GTCCGTTGTATGTTTGTTTGGAC 58.716 43.478 0.00 0.00 36.89 4.02
818 819 3.945921 TCCGTTGTATGTTTGTTTGGACA 59.054 39.130 0.00 0.00 0.00 4.02
819 820 4.039032 CCGTTGTATGTTTGTTTGGACAC 58.961 43.478 0.00 0.00 34.98 3.67
820 821 4.438880 CCGTTGTATGTTTGTTTGGACACA 60.439 41.667 0.00 0.00 34.98 3.72
821 822 5.096169 CGTTGTATGTTTGTTTGGACACAA 58.904 37.500 0.00 0.00 34.98 3.33
822 823 5.229052 CGTTGTATGTTTGTTTGGACACAAG 59.771 40.000 0.00 0.00 37.93 3.16
823 824 6.326375 GTTGTATGTTTGTTTGGACACAAGA 58.674 36.000 0.00 0.00 37.93 3.02
824 825 5.885881 TGTATGTTTGTTTGGACACAAGAC 58.114 37.500 0.00 0.00 37.93 3.01
825 826 5.416013 TGTATGTTTGTTTGGACACAAGACA 59.584 36.000 0.00 0.00 37.93 3.41
826 827 4.433186 TGTTTGTTTGGACACAAGACAG 57.567 40.909 0.00 0.00 37.93 3.51
827 828 4.075682 TGTTTGTTTGGACACAAGACAGA 58.924 39.130 0.00 0.00 37.93 3.41
828 829 4.083003 TGTTTGTTTGGACACAAGACAGAC 60.083 41.667 0.00 0.00 37.93 3.51
829 830 2.639065 TGTTTGGACACAAGACAGACC 58.361 47.619 0.00 0.00 37.97 3.85
830 831 2.026729 TGTTTGGACACAAGACAGACCA 60.027 45.455 0.00 0.00 37.97 4.02
831 832 3.013921 GTTTGGACACAAGACAGACCAA 58.986 45.455 0.00 0.00 37.97 3.67
832 833 2.620251 TGGACACAAGACAGACCAAG 57.380 50.000 0.00 0.00 0.00 3.61
833 834 1.140852 TGGACACAAGACAGACCAAGG 59.859 52.381 0.00 0.00 0.00 3.61
834 835 1.230324 GACACAAGACAGACCAAGGC 58.770 55.000 0.00 0.00 0.00 4.35
835 836 0.179018 ACACAAGACAGACCAAGGCC 60.179 55.000 0.00 0.00 0.00 5.19
836 837 0.179020 CACAAGACAGACCAAGGCCA 60.179 55.000 5.01 0.00 0.00 5.36
837 838 0.109342 ACAAGACAGACCAAGGCCAG 59.891 55.000 5.01 0.00 0.00 4.85
838 839 0.109342 CAAGACAGACCAAGGCCAGT 59.891 55.000 5.01 0.00 0.00 4.00
839 840 0.846693 AAGACAGACCAAGGCCAGTT 59.153 50.000 5.01 0.00 0.00 3.16
840 841 0.398318 AGACAGACCAAGGCCAGTTC 59.602 55.000 5.01 0.00 0.00 3.01
841 842 0.606673 GACAGACCAAGGCCAGTTCC 60.607 60.000 5.01 0.00 0.00 3.62
842 843 1.303643 CAGACCAAGGCCAGTTCCC 60.304 63.158 5.01 0.00 0.00 3.97
843 844 2.359975 GACCAAGGCCAGTTCCCG 60.360 66.667 5.01 0.00 0.00 5.14
844 845 4.660938 ACCAAGGCCAGTTCCCGC 62.661 66.667 5.01 0.00 0.00 6.13
944 951 4.760047 CTTCCCTCCACACGGCCG 62.760 72.222 26.86 26.86 0.00 6.13
960 967 1.738099 CCGTCTCCAGCAACCGAAG 60.738 63.158 0.00 0.00 0.00 3.79
965 972 0.512952 CTCCAGCAACCGAAGAAACG 59.487 55.000 0.00 0.00 0.00 3.60
981 988 2.965805 ACGGAAGTCATCCCACGTA 58.034 52.632 0.00 0.00 46.39 3.57
1138 1145 2.024868 CGACCGGCGTTCATGTTCA 61.025 57.895 6.01 0.00 34.64 3.18
1440 1447 3.036084 ACGCTCAACTTCGCCGTG 61.036 61.111 0.00 0.00 0.00 4.94
1608 1615 1.374252 CGGCAACTGGTACTTCGCT 60.374 57.895 0.00 0.00 0.00 4.93
1711 1718 0.732880 CATCGAGTTCGTGCCGACTT 60.733 55.000 1.07 0.00 40.80 3.01
1795 1802 0.947244 GTTCACAGTGAAGCCAGGTG 59.053 55.000 16.68 0.00 37.00 4.00
1796 1803 0.819259 TTCACAGTGAAGCCAGGTGC 60.819 55.000 12.24 0.00 41.71 5.01
1797 1804 1.526686 CACAGTGAAGCCAGGTGCA 60.527 57.895 0.00 0.00 44.83 4.57
1798 1805 0.892358 CACAGTGAAGCCAGGTGCAT 60.892 55.000 0.00 0.00 44.83 3.96
1799 1806 0.178981 ACAGTGAAGCCAGGTGCATT 60.179 50.000 0.00 0.00 44.83 3.56
1818 1825 2.715763 TGTCCTCCCTCCTAACAACT 57.284 50.000 0.00 0.00 0.00 3.16
1819 1826 2.986050 TGTCCTCCCTCCTAACAACTT 58.014 47.619 0.00 0.00 0.00 2.66
1836 1871 9.199982 CTAACAACTTCTCAAAATCAAATGCAT 57.800 29.630 0.00 0.00 0.00 3.96
1838 1873 8.752766 ACAACTTCTCAAAATCAAATGCATAG 57.247 30.769 0.00 0.00 0.00 2.23
1842 1877 5.898174 TCTCAAAATCAAATGCATAGCTGG 58.102 37.500 0.00 0.00 0.00 4.85
1843 1878 5.013568 TCAAAATCAAATGCATAGCTGGG 57.986 39.130 0.00 0.00 0.00 4.45
1858 1893 2.983898 AGCTGGGTGGAAACCTAAGTAA 59.016 45.455 0.00 0.00 0.00 2.24
1859 1894 3.079578 GCTGGGTGGAAACCTAAGTAAC 58.920 50.000 0.00 0.00 0.00 2.50
1860 1895 3.682696 CTGGGTGGAAACCTAAGTAACC 58.317 50.000 0.00 0.00 0.00 2.85
1861 1896 3.329277 TGGGTGGAAACCTAAGTAACCT 58.671 45.455 0.00 0.00 0.00 3.50
1862 1897 3.073356 TGGGTGGAAACCTAAGTAACCTG 59.927 47.826 0.00 0.00 0.00 4.00
1863 1898 3.560668 GGGTGGAAACCTAAGTAACCTGG 60.561 52.174 0.00 0.00 0.00 4.45
1930 1973 1.817099 GCCGAGTGGAAGCATGGAG 60.817 63.158 0.00 0.00 37.49 3.86
1998 2041 3.154710 GAGGGATTCGTTTGGAAACCTT 58.845 45.455 3.31 0.00 44.67 3.50
2025 2068 0.890996 GGATCCACCCATTCGATGCC 60.891 60.000 6.95 0.00 0.00 4.40
2231 2274 7.667043 TTGTAGGTACTATGTTTGCTTCTTG 57.333 36.000 0.00 0.00 45.60 3.02
2232 2275 6.765403 TGTAGGTACTATGTTTGCTTCTTGT 58.235 36.000 0.00 0.00 45.60 3.16
2319 2365 1.694844 TAGGGTATTGCGACGGATCA 58.305 50.000 0.00 0.00 0.00 2.92
2328 2374 1.130373 TGCGACGGATCAAAAAGCATC 59.870 47.619 0.00 0.00 0.00 3.91
2346 2392 5.250200 AGCATCGTTAATGGTTCTGGTTTA 58.750 37.500 0.00 0.00 43.52 2.01
2347 2393 5.885912 AGCATCGTTAATGGTTCTGGTTTAT 59.114 36.000 0.00 0.00 43.52 1.40
2425 2471 2.216898 GAAGCCCTTCTCCGATTGATG 58.783 52.381 0.88 0.00 36.69 3.07
2426 2472 1.207791 AGCCCTTCTCCGATTGATGT 58.792 50.000 0.00 0.00 0.00 3.06
2439 2485 0.447406 TTGATGTCGAAATGCTGCGG 59.553 50.000 0.00 0.00 0.00 5.69
2457 2503 0.747283 GGGTGCAGATTCTGAGCAGG 60.747 60.000 17.87 0.00 39.21 4.85
2464 2510 1.133853 AGATTCTGAGCAGGAATGGCC 60.134 52.381 0.00 0.00 34.09 5.36
2737 2783 3.006859 TGACAGTCTCACCAGGTTGTATG 59.993 47.826 1.31 0.00 0.00 2.39
2788 2961 8.712285 TTTAAGATAGTGGAAGAATAACACCG 57.288 34.615 0.00 0.00 35.79 4.94
2810 2983 2.957006 GGCTCTGAATTTGGAGATGCAT 59.043 45.455 0.00 0.00 0.00 3.96
2812 2985 4.215827 GGCTCTGAATTTGGAGATGCATAG 59.784 45.833 0.00 0.00 0.00 2.23
2823 2996 4.713814 TGGAGATGCATAGATCCATCCTAC 59.286 45.833 18.99 3.22 38.85 3.18
2824 2997 4.961730 GGAGATGCATAGATCCATCCTACT 59.038 45.833 16.47 0.00 38.85 2.57
2825 2998 5.068987 GGAGATGCATAGATCCATCCTACTC 59.931 48.000 16.47 7.24 38.85 2.59
2827 3000 5.421693 AGATGCATAGATCCATCCTACTCAC 59.578 44.000 0.00 0.00 38.85 3.51
2828 3001 4.482990 TGCATAGATCCATCCTACTCACA 58.517 43.478 0.00 0.00 0.00 3.58
2829 3002 5.089434 TGCATAGATCCATCCTACTCACAT 58.911 41.667 0.00 0.00 0.00 3.21
2830 3003 6.256053 TGCATAGATCCATCCTACTCACATA 58.744 40.000 0.00 0.00 0.00 2.29
2831 3004 6.379417 TGCATAGATCCATCCTACTCACATAG 59.621 42.308 0.00 0.00 0.00 2.23
2835 3235 6.560361 AGATCCATCCTACTCACATAGTCAT 58.440 40.000 0.00 0.00 39.80 3.06
2898 3299 5.545588 TGATTGACCTCTGACTTTCAAGAG 58.454 41.667 0.00 0.00 31.72 2.85
2940 3341 4.697352 GCAGTGGACACATCTTTATCAAGT 59.303 41.667 5.14 0.00 0.00 3.16
2988 3389 6.860023 CCAAAAGATCAGTCAGAAACAATGTC 59.140 38.462 0.00 0.00 0.00 3.06
3000 3401 4.508124 AGAAACAATGTCACTGTTCGACTC 59.492 41.667 0.00 0.00 35.98 3.36
3159 3560 3.354948 ACTGCTCATTATGTGGCAAGA 57.645 42.857 13.68 0.00 34.88 3.02
3189 3590 5.128335 TGGTTTATATGGCATGTGCATTCAA 59.872 36.000 10.98 0.00 44.36 2.69
3305 3708 5.920273 ACATAAAAATGTCAAAGAGCGTTGG 59.080 36.000 0.00 0.00 0.00 3.77
3370 3773 5.866633 AGTTCGAGAAGATCACATTTCAGTC 59.133 40.000 0.00 0.00 0.00 3.51
3604 4007 3.057315 ACTGCCCAGATTTTGAAATGTCG 60.057 43.478 1.69 0.00 0.00 4.35
3654 4447 2.772568 TCAGTTGTTTCATTGTGCCG 57.227 45.000 0.00 0.00 0.00 5.69
3686 4479 7.909267 TCTTGTTTGATAACTCTAATCGCATG 58.091 34.615 0.00 0.00 35.24 4.06
3855 4648 4.331168 GGCACAGTGTTCATATCTGTTCTC 59.669 45.833 1.61 0.00 39.89 2.87
3875 4668 0.106708 TGCAGACCACCTCAGTTCAC 59.893 55.000 0.00 0.00 0.00 3.18
3900 4693 0.104487 TGCCCAAACAACTGCATGTG 59.896 50.000 0.00 0.00 32.81 3.21
3996 4789 6.634837 GCTTTTTCTTAGCTTTCTGAACTGAC 59.365 38.462 0.00 0.00 35.74 3.51
4113 4906 1.135575 GGCAATGTTCTTCTTGCTCCG 60.136 52.381 7.15 0.00 45.49 4.63
4128 4921 0.523072 CTCCGGTGCCAATGAAACTG 59.477 55.000 0.00 0.00 0.00 3.16
4485 5278 4.846779 TTTCTTGGGTGGAAAAGAATCG 57.153 40.909 0.00 0.00 40.94 3.34
4617 5410 8.614469 TGAAACCATGGTTTTAAAAATGGATC 57.386 30.769 36.86 22.67 46.80 3.36
4687 5480 7.467623 CCTGACAGATTTACATTGTTCTTAGC 58.532 38.462 3.32 0.00 0.00 3.09
4693 5486 8.506437 CAGATTTACATTGTTCTTAGCAGACAA 58.494 33.333 0.00 0.00 0.00 3.18
4695 5488 9.846248 GATTTACATTGTTCTTAGCAGACAATT 57.154 29.630 0.00 0.00 32.72 2.32
4767 5560 2.027653 GCTAGTGCTCTCCTTGGAAGTT 60.028 50.000 0.00 0.00 36.03 2.66
5002 5814 4.214986 TCATGGACTCTTTTGGCGATTA 57.785 40.909 0.00 0.00 0.00 1.75
5003 5815 4.584874 TCATGGACTCTTTTGGCGATTAA 58.415 39.130 0.00 0.00 0.00 1.40
5007 5819 4.398044 TGGACTCTTTTGGCGATTAATTCC 59.602 41.667 0.00 0.00 0.00 3.01
5033 5861 6.266103 TCATCCCATGATTTAATTCTCTTGGC 59.734 38.462 0.00 0.00 36.09 4.52
5054 5882 4.038162 GGCTATCTAAGTGACCGATTGTCT 59.962 45.833 0.00 0.00 44.75 3.41
5057 5885 5.661056 ATCTAAGTGACCGATTGTCTGAA 57.339 39.130 0.00 0.00 44.75 3.02
5080 5908 9.120538 TGAAAGCTATAAATGGAGGTATTGAAC 57.879 33.333 0.00 0.00 0.00 3.18
5239 6067 0.321021 AGACTGTCCAGCTGAGCAAG 59.679 55.000 17.39 9.55 0.00 4.01
5281 6109 4.284490 ACAAGAGCCATCTGTGAGTTTCTA 59.716 41.667 0.00 0.00 35.37 2.10
5507 6338 1.006825 TCGCACATCAGAACGAACCG 61.007 55.000 0.00 0.00 0.00 4.44
5565 6396 1.509787 CGAAACATTCACCGCGCAG 60.510 57.895 8.75 0.00 0.00 5.18
5777 6609 5.220080 GCAATGTTGATTTGCACTGTATTCG 60.220 40.000 3.68 0.00 46.78 3.34
5810 6642 3.472652 TGCGCATTTTAGGAACGGATAT 58.527 40.909 5.66 0.00 0.00 1.63
6473 7318 4.508124 GCCTGGATGTATTTAGAAGACACG 59.492 45.833 0.00 0.00 0.00 4.49
6715 7587 1.704628 TGGCTCTCCACAAGAAATGGA 59.295 47.619 0.00 0.00 44.20 3.41
6716 7588 2.309755 TGGCTCTCCACAAGAAATGGAT 59.690 45.455 0.00 0.00 45.27 3.41
6843 7717 7.395772 TCAAAATAAATGAGATGTAACTGCCCA 59.604 33.333 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.276218 CGAATACATTTCGTGAAAGTTAGGGTA 59.724 37.037 1.20 0.00 37.18 3.69
1 2 6.091713 CGAATACATTTCGTGAAAGTTAGGGT 59.908 38.462 1.20 0.00 37.18 4.34
2 3 6.475207 CGAATACATTTCGTGAAAGTTAGGG 58.525 40.000 1.20 0.00 37.18 3.53
3 4 5.957796 GCGAATACATTTCGTGAAAGTTAGG 59.042 40.000 9.20 0.00 43.24 2.69
4 5 6.994248 GCGAATACATTTCGTGAAAGTTAG 57.006 37.500 9.20 0.00 43.24 2.34
13 14 2.159198 AGGGTACGCGAATACATTTCGT 60.159 45.455 15.93 6.55 43.24 3.85
14 15 2.466846 AGGGTACGCGAATACATTTCG 58.533 47.619 15.93 3.51 44.06 3.46
15 16 5.971895 TTTAGGGTACGCGAATACATTTC 57.028 39.130 15.93 0.00 0.00 2.17
16 17 5.295045 CCTTTTAGGGTACGCGAATACATTT 59.705 40.000 15.93 0.00 0.00 2.32
17 18 4.812626 CCTTTTAGGGTACGCGAATACATT 59.187 41.667 15.93 0.34 0.00 2.71
18 19 4.374399 CCTTTTAGGGTACGCGAATACAT 58.626 43.478 15.93 1.01 0.00 2.29
19 20 3.784338 CCTTTTAGGGTACGCGAATACA 58.216 45.455 15.93 0.00 0.00 2.29
32 33 3.629142 AATCGAGTGGACCCTTTTAGG 57.371 47.619 0.00 0.00 34.30 2.69
33 34 5.671493 ACATAATCGAGTGGACCCTTTTAG 58.329 41.667 0.00 0.00 0.00 1.85
34 35 5.687166 ACATAATCGAGTGGACCCTTTTA 57.313 39.130 0.00 0.00 0.00 1.52
35 36 4.569719 ACATAATCGAGTGGACCCTTTT 57.430 40.909 0.00 0.00 0.00 2.27
36 37 5.687166 TTACATAATCGAGTGGACCCTTT 57.313 39.130 0.00 0.00 0.00 3.11
37 38 5.687166 TTTACATAATCGAGTGGACCCTT 57.313 39.130 0.00 0.00 0.00 3.95
38 39 5.365605 TCATTTACATAATCGAGTGGACCCT 59.634 40.000 0.00 0.00 0.00 4.34
39 40 5.607477 TCATTTACATAATCGAGTGGACCC 58.393 41.667 0.00 0.00 0.00 4.46
40 41 6.513180 TCTCATTTACATAATCGAGTGGACC 58.487 40.000 0.00 0.00 0.00 4.46
41 42 7.867909 TGATCTCATTTACATAATCGAGTGGAC 59.132 37.037 0.00 0.00 0.00 4.02
42 43 7.951591 TGATCTCATTTACATAATCGAGTGGA 58.048 34.615 0.00 0.00 0.00 4.02
43 44 8.593492 TTGATCTCATTTACATAATCGAGTGG 57.407 34.615 0.00 0.00 0.00 4.00
60 61 9.097257 GGAAAACAAATTGAAGTTTTGATCTCA 57.903 29.630 16.58 0.00 45.09 3.27
61 62 9.317936 AGGAAAACAAATTGAAGTTTTGATCTC 57.682 29.630 16.58 6.50 45.09 2.75
62 63 9.671279 AAGGAAAACAAATTGAAGTTTTGATCT 57.329 25.926 16.58 10.63 45.09 2.75
63 64 9.920826 GAAGGAAAACAAATTGAAGTTTTGATC 57.079 29.630 16.58 10.40 45.09 2.92
64 65 8.892723 GGAAGGAAAACAAATTGAAGTTTTGAT 58.107 29.630 16.58 6.63 45.09 2.57
65 66 7.880195 TGGAAGGAAAACAAATTGAAGTTTTGA 59.120 29.630 16.58 0.00 45.09 2.69
66 67 8.038492 TGGAAGGAAAACAAATTGAAGTTTTG 57.962 30.769 16.58 0.00 45.09 2.44
68 69 8.806429 AATGGAAGGAAAACAAATTGAAGTTT 57.194 26.923 0.00 0.00 39.46 2.66
69 70 9.898152 TTAATGGAAGGAAAACAAATTGAAGTT 57.102 25.926 0.00 0.00 0.00 2.66
70 71 9.546428 CTTAATGGAAGGAAAACAAATTGAAGT 57.454 29.630 0.00 0.00 0.00 3.01
71 72 9.546428 ACTTAATGGAAGGAAAACAAATTGAAG 57.454 29.630 0.00 0.00 39.74 3.02
72 73 9.541143 GACTTAATGGAAGGAAAACAAATTGAA 57.459 29.630 0.00 0.00 39.74 2.69
73 74 8.147704 GGACTTAATGGAAGGAAAACAAATTGA 58.852 33.333 0.00 0.00 39.74 2.57
74 75 7.930865 TGGACTTAATGGAAGGAAAACAAATTG 59.069 33.333 0.00 0.00 39.74 2.32
75 76 8.028652 TGGACTTAATGGAAGGAAAACAAATT 57.971 30.769 0.00 0.00 39.74 1.82
76 77 7.610580 TGGACTTAATGGAAGGAAAACAAAT 57.389 32.000 0.00 0.00 39.74 2.32
77 78 7.425224 TTGGACTTAATGGAAGGAAAACAAA 57.575 32.000 0.00 0.00 39.74 2.83
78 79 7.441017 CATTGGACTTAATGGAAGGAAAACAA 58.559 34.615 0.00 0.00 39.74 2.83
79 80 6.991938 CATTGGACTTAATGGAAGGAAAACA 58.008 36.000 0.00 0.00 39.74 2.83
90 91 9.784531 ATATAGAGAACACCATTGGACTTAATG 57.215 33.333 10.37 0.00 37.70 1.90
95 96 9.601810 TGTATATATAGAGAACACCATTGGACT 57.398 33.333 10.37 3.15 0.00 3.85
117 118 9.420118 GAGAATGAGTGAGGGAGATATATGTAT 57.580 37.037 0.00 0.00 0.00 2.29
118 119 8.619281 AGAGAATGAGTGAGGGAGATATATGTA 58.381 37.037 0.00 0.00 0.00 2.29
119 120 7.477864 AGAGAATGAGTGAGGGAGATATATGT 58.522 38.462 0.00 0.00 0.00 2.29
120 121 7.068593 GGAGAGAATGAGTGAGGGAGATATATG 59.931 44.444 0.00 0.00 0.00 1.78
121 122 7.035911 AGGAGAGAATGAGTGAGGGAGATATAT 60.036 40.741 0.00 0.00 0.00 0.86
122 123 6.276806 AGGAGAGAATGAGTGAGGGAGATATA 59.723 42.308 0.00 0.00 0.00 0.86
123 124 5.076318 AGGAGAGAATGAGTGAGGGAGATAT 59.924 44.000 0.00 0.00 0.00 1.63
124 125 4.418526 AGGAGAGAATGAGTGAGGGAGATA 59.581 45.833 0.00 0.00 0.00 1.98
125 126 3.207321 AGGAGAGAATGAGTGAGGGAGAT 59.793 47.826 0.00 0.00 0.00 2.75
126 127 2.584965 AGGAGAGAATGAGTGAGGGAGA 59.415 50.000 0.00 0.00 0.00 3.71
127 128 3.030873 AGGAGAGAATGAGTGAGGGAG 57.969 52.381 0.00 0.00 0.00 4.30
128 129 3.481559 AAGGAGAGAATGAGTGAGGGA 57.518 47.619 0.00 0.00 0.00 4.20
129 130 4.285863 AGTAAGGAGAGAATGAGTGAGGG 58.714 47.826 0.00 0.00 0.00 4.30
130 131 4.952957 TGAGTAAGGAGAGAATGAGTGAGG 59.047 45.833 0.00 0.00 0.00 3.86
131 132 5.417266 TGTGAGTAAGGAGAGAATGAGTGAG 59.583 44.000 0.00 0.00 0.00 3.51
132 133 5.325239 TGTGAGTAAGGAGAGAATGAGTGA 58.675 41.667 0.00 0.00 0.00 3.41
133 134 5.651387 TGTGAGTAAGGAGAGAATGAGTG 57.349 43.478 0.00 0.00 0.00 3.51
134 135 7.962995 TTATGTGAGTAAGGAGAGAATGAGT 57.037 36.000 0.00 0.00 0.00 3.41
251 252 9.169592 CATTCAAAATCTTCCCATGCTATTTTT 57.830 29.630 0.00 0.00 29.66 1.94
252 253 7.771826 CCATTCAAAATCTTCCCATGCTATTTT 59.228 33.333 0.00 0.00 31.67 1.82
253 254 7.277396 CCATTCAAAATCTTCCCATGCTATTT 58.723 34.615 0.00 0.00 0.00 1.40
254 255 6.183361 CCCATTCAAAATCTTCCCATGCTATT 60.183 38.462 0.00 0.00 0.00 1.73
255 256 5.306160 CCCATTCAAAATCTTCCCATGCTAT 59.694 40.000 0.00 0.00 0.00 2.97
256 257 4.650588 CCCATTCAAAATCTTCCCATGCTA 59.349 41.667 0.00 0.00 0.00 3.49
257 258 3.453353 CCCATTCAAAATCTTCCCATGCT 59.547 43.478 0.00 0.00 0.00 3.79
258 259 3.451902 TCCCATTCAAAATCTTCCCATGC 59.548 43.478 0.00 0.00 0.00 4.06
259 260 4.100498 CCTCCCATTCAAAATCTTCCCATG 59.900 45.833 0.00 0.00 0.00 3.66
260 261 4.292643 CCTCCCATTCAAAATCTTCCCAT 58.707 43.478 0.00 0.00 0.00 4.00
261 262 3.566332 CCCTCCCATTCAAAATCTTCCCA 60.566 47.826 0.00 0.00 0.00 4.37
262 263 3.033909 CCCTCCCATTCAAAATCTTCCC 58.966 50.000 0.00 0.00 0.00 3.97
263 264 3.956848 CTCCCTCCCATTCAAAATCTTCC 59.043 47.826 0.00 0.00 0.00 3.46
264 265 4.604156 ACTCCCTCCCATTCAAAATCTTC 58.396 43.478 0.00 0.00 0.00 2.87
265 266 4.682021 ACTCCCTCCCATTCAAAATCTT 57.318 40.909 0.00 0.00 0.00 2.40
266 267 6.347061 AATACTCCCTCCCATTCAAAATCT 57.653 37.500 0.00 0.00 0.00 2.40
267 268 7.290813 AGTAATACTCCCTCCCATTCAAAATC 58.709 38.462 0.00 0.00 0.00 2.17
268 269 7.226059 AGTAATACTCCCTCCCATTCAAAAT 57.774 36.000 0.00 0.00 0.00 1.82
269 270 6.652205 AGTAATACTCCCTCCCATTCAAAA 57.348 37.500 0.00 0.00 0.00 2.44
270 271 6.248569 GAGTAATACTCCCTCCCATTCAAA 57.751 41.667 9.19 0.00 39.28 2.69
271 272 5.888982 GAGTAATACTCCCTCCCATTCAA 57.111 43.478 9.19 0.00 39.28 2.69
283 284 7.110155 TGTCCAGAAATTTGGGAGTAATACTC 58.890 38.462 11.79 11.79 44.32 2.59
284 285 7.027874 TGTCCAGAAATTTGGGAGTAATACT 57.972 36.000 8.14 0.00 38.81 2.12
285 286 6.318900 CCTGTCCAGAAATTTGGGAGTAATAC 59.681 42.308 8.14 0.00 38.81 1.89
286 287 6.216662 TCCTGTCCAGAAATTTGGGAGTAATA 59.783 38.462 8.14 0.00 38.81 0.98
287 288 5.015178 TCCTGTCCAGAAATTTGGGAGTAAT 59.985 40.000 8.14 0.00 38.81 1.89
288 289 4.352595 TCCTGTCCAGAAATTTGGGAGTAA 59.647 41.667 8.14 0.00 38.81 2.24
289 290 3.913799 TCCTGTCCAGAAATTTGGGAGTA 59.086 43.478 8.14 1.90 38.81 2.59
290 291 2.716424 TCCTGTCCAGAAATTTGGGAGT 59.284 45.455 8.14 0.00 38.81 3.85
291 292 3.439857 TCCTGTCCAGAAATTTGGGAG 57.560 47.619 8.14 0.44 38.81 4.30
292 293 3.496331 GTTCCTGTCCAGAAATTTGGGA 58.504 45.455 0.00 0.00 38.81 4.37
293 294 2.228822 CGTTCCTGTCCAGAAATTTGGG 59.771 50.000 0.00 0.00 38.81 4.12
294 295 2.884639 ACGTTCCTGTCCAGAAATTTGG 59.115 45.455 0.00 0.00 39.70 3.28
295 296 4.568152 AACGTTCCTGTCCAGAAATTTG 57.432 40.909 0.00 0.00 0.00 2.32
296 297 4.202111 CCAAACGTTCCTGTCCAGAAATTT 60.202 41.667 0.00 0.00 0.00 1.82
297 298 3.317993 CCAAACGTTCCTGTCCAGAAATT 59.682 43.478 0.00 0.00 0.00 1.82
298 299 2.884639 CCAAACGTTCCTGTCCAGAAAT 59.115 45.455 0.00 0.00 0.00 2.17
299 300 2.294074 CCAAACGTTCCTGTCCAGAAA 58.706 47.619 0.00 0.00 0.00 2.52
300 301 1.210967 ACCAAACGTTCCTGTCCAGAA 59.789 47.619 0.00 0.00 0.00 3.02
301 302 0.834612 ACCAAACGTTCCTGTCCAGA 59.165 50.000 0.00 0.00 0.00 3.86
302 303 1.202651 AGACCAAACGTTCCTGTCCAG 60.203 52.381 16.51 0.00 0.00 3.86
303 304 0.834612 AGACCAAACGTTCCTGTCCA 59.165 50.000 16.51 0.00 0.00 4.02
304 305 2.825861 TAGACCAAACGTTCCTGTCC 57.174 50.000 16.51 2.42 0.00 4.02
305 306 3.000727 CCATAGACCAAACGTTCCTGTC 58.999 50.000 0.00 8.87 0.00 3.51
306 307 2.370849 ACCATAGACCAAACGTTCCTGT 59.629 45.455 0.00 0.00 0.00 4.00
307 308 3.000727 GACCATAGACCAAACGTTCCTG 58.999 50.000 0.00 0.00 0.00 3.86
308 309 2.904434 AGACCATAGACCAAACGTTCCT 59.096 45.455 0.00 0.00 0.00 3.36
309 310 3.329929 AGACCATAGACCAAACGTTCC 57.670 47.619 0.00 0.00 0.00 3.62
310 311 5.657474 TCATAGACCATAGACCAAACGTTC 58.343 41.667 0.00 0.00 0.00 3.95
311 312 5.670792 TCATAGACCATAGACCAAACGTT 57.329 39.130 0.00 0.00 0.00 3.99
312 313 5.670792 TTCATAGACCATAGACCAAACGT 57.329 39.130 0.00 0.00 0.00 3.99
313 314 6.978343 TTTTCATAGACCATAGACCAAACG 57.022 37.500 0.00 0.00 0.00 3.60
378 379 9.883142 ACAATGAAAGGTCAAGTTTATTTCAAA 57.117 25.926 3.13 0.00 41.62 2.69
412 413 5.049336 CGGGGTTCTTTGTTTTTGTGTTTTT 60.049 36.000 0.00 0.00 0.00 1.94
413 414 4.452795 CGGGGTTCTTTGTTTTTGTGTTTT 59.547 37.500 0.00 0.00 0.00 2.43
414 415 3.997681 CGGGGTTCTTTGTTTTTGTGTTT 59.002 39.130 0.00 0.00 0.00 2.83
415 416 3.007074 ACGGGGTTCTTTGTTTTTGTGTT 59.993 39.130 0.00 0.00 0.00 3.32
416 417 2.563620 ACGGGGTTCTTTGTTTTTGTGT 59.436 40.909 0.00 0.00 0.00 3.72
417 418 3.239587 ACGGGGTTCTTTGTTTTTGTG 57.760 42.857 0.00 0.00 0.00 3.33
418 419 3.258622 TCAACGGGGTTCTTTGTTTTTGT 59.741 39.130 0.00 0.00 0.00 2.83
419 420 3.615056 GTCAACGGGGTTCTTTGTTTTTG 59.385 43.478 0.00 0.00 0.00 2.44
420 421 3.258622 TGTCAACGGGGTTCTTTGTTTTT 59.741 39.130 0.00 0.00 0.00 1.94
421 422 2.826725 TGTCAACGGGGTTCTTTGTTTT 59.173 40.909 0.00 0.00 0.00 2.43
422 423 2.448453 TGTCAACGGGGTTCTTTGTTT 58.552 42.857 0.00 0.00 0.00 2.83
423 424 2.131776 TGTCAACGGGGTTCTTTGTT 57.868 45.000 0.00 0.00 0.00 2.83
424 425 2.358322 ATGTCAACGGGGTTCTTTGT 57.642 45.000 0.00 0.00 0.00 2.83
425 426 3.726291 AAATGTCAACGGGGTTCTTTG 57.274 42.857 0.00 0.00 0.00 2.77
426 427 4.746535 AAAAATGTCAACGGGGTTCTTT 57.253 36.364 0.00 0.00 0.00 2.52
454 455 8.421002 ACTATTCACACTATTTTGGCTGTTTTT 58.579 29.630 0.00 0.00 0.00 1.94
455 456 7.867403 CACTATTCACACTATTTTGGCTGTTTT 59.133 33.333 0.00 0.00 0.00 2.43
456 457 7.230510 TCACTATTCACACTATTTTGGCTGTTT 59.769 33.333 0.00 0.00 0.00 2.83
457 458 6.714810 TCACTATTCACACTATTTTGGCTGTT 59.285 34.615 0.00 0.00 0.00 3.16
458 459 6.149474 GTCACTATTCACACTATTTTGGCTGT 59.851 38.462 0.00 0.00 0.00 4.40
459 460 6.372659 AGTCACTATTCACACTATTTTGGCTG 59.627 38.462 0.00 0.00 0.00 4.85
460 461 6.476378 AGTCACTATTCACACTATTTTGGCT 58.524 36.000 0.00 0.00 0.00 4.75
461 462 6.743575 AGTCACTATTCACACTATTTTGGC 57.256 37.500 0.00 0.00 0.00 4.52
467 468 9.751542 GCTGTTATAAGTCACTATTCACACTAT 57.248 33.333 0.00 0.00 0.00 2.12
468 469 8.745590 TGCTGTTATAAGTCACTATTCACACTA 58.254 33.333 0.00 0.00 0.00 2.74
469 470 7.611770 TGCTGTTATAAGTCACTATTCACACT 58.388 34.615 0.00 0.00 0.00 3.55
470 471 7.827819 TGCTGTTATAAGTCACTATTCACAC 57.172 36.000 0.00 0.00 0.00 3.82
498 499 3.250040 CGTCGACTTCAGGGAATGTTTTT 59.750 43.478 14.70 0.00 0.00 1.94
499 500 2.806244 CGTCGACTTCAGGGAATGTTTT 59.194 45.455 14.70 0.00 0.00 2.43
500 501 2.413837 CGTCGACTTCAGGGAATGTTT 58.586 47.619 14.70 0.00 0.00 2.83
501 502 1.939838 GCGTCGACTTCAGGGAATGTT 60.940 52.381 14.70 0.00 0.00 2.71
502 503 0.389948 GCGTCGACTTCAGGGAATGT 60.390 55.000 14.70 0.00 0.00 2.71
503 504 0.108615 AGCGTCGACTTCAGGGAATG 60.109 55.000 14.70 0.00 0.00 2.67
504 505 0.108615 CAGCGTCGACTTCAGGGAAT 60.109 55.000 14.70 0.00 0.00 3.01
505 506 1.289066 CAGCGTCGACTTCAGGGAA 59.711 57.895 14.70 0.00 0.00 3.97
506 507 2.636412 CCAGCGTCGACTTCAGGGA 61.636 63.158 14.70 0.00 0.00 4.20
507 508 2.125912 CCAGCGTCGACTTCAGGG 60.126 66.667 14.70 7.37 0.00 4.45
508 509 0.600255 AAACCAGCGTCGACTTCAGG 60.600 55.000 14.70 13.29 0.00 3.86
509 510 1.217882 AAAACCAGCGTCGACTTCAG 58.782 50.000 14.70 2.52 0.00 3.02
510 511 1.658994 AAAAACCAGCGTCGACTTCA 58.341 45.000 14.70 0.00 0.00 3.02
545 546 9.726438 ACTTGACTTTCTTTTGCACTAGTATAT 57.274 29.630 0.00 0.00 0.00 0.86
546 547 9.555727 AACTTGACTTTCTTTTGCACTAGTATA 57.444 29.630 0.00 0.00 0.00 1.47
547 548 8.451908 AACTTGACTTTCTTTTGCACTAGTAT 57.548 30.769 0.00 0.00 0.00 2.12
548 549 7.859325 AACTTGACTTTCTTTTGCACTAGTA 57.141 32.000 0.00 0.00 0.00 1.82
549 550 6.759497 AACTTGACTTTCTTTTGCACTAGT 57.241 33.333 0.00 0.00 0.00 2.57
550 551 9.736023 AATAAACTTGACTTTCTTTTGCACTAG 57.264 29.630 0.00 0.00 0.00 2.57
551 552 9.730420 GAATAAACTTGACTTTCTTTTGCACTA 57.270 29.630 0.00 0.00 0.00 2.74
552 553 8.470002 AGAATAAACTTGACTTTCTTTTGCACT 58.530 29.630 0.00 0.00 0.00 4.40
553 554 8.634475 AGAATAAACTTGACTTTCTTTTGCAC 57.366 30.769 0.00 0.00 0.00 4.57
625 626 5.771666 CCTTCGGTTCCTAGGTGTATATACA 59.228 44.000 11.62 11.62 0.00 2.29
626 627 5.184671 CCCTTCGGTTCCTAGGTGTATATAC 59.815 48.000 9.08 5.89 0.00 1.47
627 628 5.327732 CCCTTCGGTTCCTAGGTGTATATA 58.672 45.833 9.08 0.00 0.00 0.86
628 629 4.158015 CCCTTCGGTTCCTAGGTGTATAT 58.842 47.826 9.08 0.00 0.00 0.86
629 630 3.569491 CCCTTCGGTTCCTAGGTGTATA 58.431 50.000 9.08 0.00 0.00 1.47
630 631 2.395619 CCCTTCGGTTCCTAGGTGTAT 58.604 52.381 9.08 0.00 0.00 2.29
631 632 1.856629 CCCTTCGGTTCCTAGGTGTA 58.143 55.000 9.08 0.00 0.00 2.90
632 633 1.551019 GCCCTTCGGTTCCTAGGTGT 61.551 60.000 9.08 0.00 0.00 4.16
633 634 1.221021 GCCCTTCGGTTCCTAGGTG 59.779 63.158 9.08 0.00 0.00 4.00
634 635 0.620700 ATGCCCTTCGGTTCCTAGGT 60.621 55.000 9.08 0.00 0.00 3.08
635 636 0.546598 AATGCCCTTCGGTTCCTAGG 59.453 55.000 0.82 0.82 0.00 3.02
636 637 2.289565 GAAATGCCCTTCGGTTCCTAG 58.710 52.381 0.00 0.00 0.00 3.02
637 638 1.064979 GGAAATGCCCTTCGGTTCCTA 60.065 52.381 0.00 0.00 35.80 2.94
638 639 0.323451 GGAAATGCCCTTCGGTTCCT 60.323 55.000 0.00 0.00 35.80 3.36
639 640 2.189833 GGAAATGCCCTTCGGTTCC 58.810 57.895 0.00 0.00 0.00 3.62
649 650 2.358957 GCAGAAATTTGGGGAAATGCC 58.641 47.619 0.00 0.00 0.00 4.40
650 651 2.001872 CGCAGAAATTTGGGGAAATGC 58.998 47.619 0.00 0.00 0.00 3.56
651 652 2.995258 CACGCAGAAATTTGGGGAAATG 59.005 45.455 0.00 0.00 35.52 2.32
652 653 2.632512 ACACGCAGAAATTTGGGGAAAT 59.367 40.909 0.00 0.00 35.52 2.17
653 654 2.035632 ACACGCAGAAATTTGGGGAAA 58.964 42.857 0.00 0.00 35.52 3.13
654 655 1.698506 ACACGCAGAAATTTGGGGAA 58.301 45.000 0.00 0.00 35.52 3.97
655 656 1.698506 AACACGCAGAAATTTGGGGA 58.301 45.000 0.00 0.00 35.52 4.81
656 657 2.524569 AAACACGCAGAAATTTGGGG 57.475 45.000 0.00 0.00 35.52 4.96
657 658 3.490526 CAGAAAACACGCAGAAATTTGGG 59.509 43.478 0.00 0.00 37.08 4.12
658 659 4.026640 CACAGAAAACACGCAGAAATTTGG 60.027 41.667 0.00 0.00 0.00 3.28
659 660 4.548726 GCACAGAAAACACGCAGAAATTTG 60.549 41.667 0.00 0.00 0.00 2.32
660 661 3.551485 GCACAGAAAACACGCAGAAATTT 59.449 39.130 0.00 0.00 0.00 1.82
661 662 3.115554 GCACAGAAAACACGCAGAAATT 58.884 40.909 0.00 0.00 0.00 1.82
662 663 2.098934 TGCACAGAAAACACGCAGAAAT 59.901 40.909 0.00 0.00 0.00 2.17
663 664 1.470494 TGCACAGAAAACACGCAGAAA 59.530 42.857 0.00 0.00 0.00 2.52
664 665 1.090728 TGCACAGAAAACACGCAGAA 58.909 45.000 0.00 0.00 0.00 3.02
665 666 0.376852 GTGCACAGAAAACACGCAGA 59.623 50.000 13.17 0.00 32.31 4.26
666 667 0.592247 GGTGCACAGAAAACACGCAG 60.592 55.000 20.43 0.00 35.11 5.18
667 668 1.308783 TGGTGCACAGAAAACACGCA 61.309 50.000 20.43 0.00 35.11 5.24
668 669 0.030638 ATGGTGCACAGAAAACACGC 59.969 50.000 20.43 0.00 35.11 5.34
669 670 1.334960 GGATGGTGCACAGAAAACACG 60.335 52.381 20.43 0.00 35.11 4.49
670 671 1.680735 TGGATGGTGCACAGAAAACAC 59.319 47.619 20.43 0.00 0.00 3.32
671 672 2.064434 TGGATGGTGCACAGAAAACA 57.936 45.000 20.43 6.42 0.00 2.83
672 673 3.451141 TTTGGATGGTGCACAGAAAAC 57.549 42.857 20.43 0.00 0.00 2.43
673 674 3.803021 GCATTTGGATGGTGCACAGAAAA 60.803 43.478 20.43 11.40 38.68 2.29
674 675 2.288948 GCATTTGGATGGTGCACAGAAA 60.289 45.455 20.43 9.46 38.68 2.52
675 676 1.273048 GCATTTGGATGGTGCACAGAA 59.727 47.619 20.43 3.64 38.68 3.02
676 677 0.889994 GCATTTGGATGGTGCACAGA 59.110 50.000 20.43 4.51 38.68 3.41
677 678 0.604073 TGCATTTGGATGGTGCACAG 59.396 50.000 20.43 0.00 43.30 3.66
678 679 2.742746 TGCATTTGGATGGTGCACA 58.257 47.368 20.43 5.24 43.30 4.57
681 682 3.806625 AGTAATGCATTTGGATGGTGC 57.193 42.857 18.75 0.00 39.26 5.01
682 683 5.587388 AGAAGTAATGCATTTGGATGGTG 57.413 39.130 18.75 0.00 33.72 4.17
683 684 8.995027 TTATAGAAGTAATGCATTTGGATGGT 57.005 30.769 18.75 2.77 33.72 3.55
729 730 8.540388 GCATATTGAAGACATAAGTATCCCCTA 58.460 37.037 0.00 0.00 0.00 3.53
730 731 7.398024 GCATATTGAAGACATAAGTATCCCCT 58.602 38.462 0.00 0.00 0.00 4.79
731 732 6.313905 CGCATATTGAAGACATAAGTATCCCC 59.686 42.308 0.00 0.00 0.00 4.81
732 733 6.874134 ACGCATATTGAAGACATAAGTATCCC 59.126 38.462 0.00 0.00 0.00 3.85
733 734 7.891183 ACGCATATTGAAGACATAAGTATCC 57.109 36.000 0.00 0.00 0.00 2.59
734 735 8.765219 ACAACGCATATTGAAGACATAAGTATC 58.235 33.333 0.00 0.00 33.57 2.24
735 736 8.551205 CACAACGCATATTGAAGACATAAGTAT 58.449 33.333 0.00 0.00 33.57 2.12
736 737 7.547722 ACACAACGCATATTGAAGACATAAGTA 59.452 33.333 0.00 0.00 33.57 2.24
737 738 6.371548 ACACAACGCATATTGAAGACATAAGT 59.628 34.615 0.00 0.00 33.57 2.24
738 739 6.684131 CACACAACGCATATTGAAGACATAAG 59.316 38.462 0.00 0.00 33.57 1.73
739 740 6.370166 TCACACAACGCATATTGAAGACATAA 59.630 34.615 0.00 0.00 33.57 1.90
740 741 5.872070 TCACACAACGCATATTGAAGACATA 59.128 36.000 0.00 0.00 33.57 2.29
741 742 4.694982 TCACACAACGCATATTGAAGACAT 59.305 37.500 0.00 0.00 33.57 3.06
742 743 4.061596 TCACACAACGCATATTGAAGACA 58.938 39.130 0.00 0.00 33.57 3.41
743 744 4.152402 ACTCACACAACGCATATTGAAGAC 59.848 41.667 0.00 0.00 33.57 3.01
744 745 4.152223 CACTCACACAACGCATATTGAAGA 59.848 41.667 0.00 0.00 33.57 2.87
745 746 4.083855 ACACTCACACAACGCATATTGAAG 60.084 41.667 0.00 0.00 33.57 3.02
746 747 3.812609 ACACTCACACAACGCATATTGAA 59.187 39.130 0.00 0.00 33.57 2.69
747 748 3.398406 ACACTCACACAACGCATATTGA 58.602 40.909 0.00 0.00 33.57 2.57
748 749 3.433274 AGACACTCACACAACGCATATTG 59.567 43.478 0.00 0.00 35.59 1.90
749 750 3.664107 AGACACTCACACAACGCATATT 58.336 40.909 0.00 0.00 0.00 1.28
750 751 3.319137 AGACACTCACACAACGCATAT 57.681 42.857 0.00 0.00 0.00 1.78
751 752 2.812358 AGACACTCACACAACGCATA 57.188 45.000 0.00 0.00 0.00 3.14
752 753 2.812358 TAGACACTCACACAACGCAT 57.188 45.000 0.00 0.00 0.00 4.73
753 754 2.223947 ACATAGACACTCACACAACGCA 60.224 45.455 0.00 0.00 0.00 5.24
754 755 2.155732 CACATAGACACTCACACAACGC 59.844 50.000 0.00 0.00 0.00 4.84
755 756 2.731451 CCACATAGACACTCACACAACG 59.269 50.000 0.00 0.00 0.00 4.10
756 757 3.494626 CACCACATAGACACTCACACAAC 59.505 47.826 0.00 0.00 0.00 3.32
757 758 3.727726 CACCACATAGACACTCACACAA 58.272 45.455 0.00 0.00 0.00 3.33
758 759 2.547855 GCACCACATAGACACTCACACA 60.548 50.000 0.00 0.00 0.00 3.72
759 760 2.069273 GCACCACATAGACACTCACAC 58.931 52.381 0.00 0.00 0.00 3.82
760 761 1.970640 AGCACCACATAGACACTCACA 59.029 47.619 0.00 0.00 0.00 3.58
761 762 2.289072 ACAGCACCACATAGACACTCAC 60.289 50.000 0.00 0.00 0.00 3.51
762 763 1.970640 ACAGCACCACATAGACACTCA 59.029 47.619 0.00 0.00 0.00 3.41
763 764 2.029020 TCACAGCACCACATAGACACTC 60.029 50.000 0.00 0.00 0.00 3.51
764 765 1.970640 TCACAGCACCACATAGACACT 59.029 47.619 0.00 0.00 0.00 3.55
765 766 2.289072 ACTCACAGCACCACATAGACAC 60.289 50.000 0.00 0.00 0.00 3.67
766 767 1.970640 ACTCACAGCACCACATAGACA 59.029 47.619 0.00 0.00 0.00 3.41
767 768 2.289072 ACACTCACAGCACCACATAGAC 60.289 50.000 0.00 0.00 0.00 2.59
768 769 1.970640 ACACTCACAGCACCACATAGA 59.029 47.619 0.00 0.00 0.00 1.98
769 770 2.071540 CACACTCACAGCACCACATAG 58.928 52.381 0.00 0.00 0.00 2.23
770 771 1.416030 ACACACTCACAGCACCACATA 59.584 47.619 0.00 0.00 0.00 2.29
771 772 0.181114 ACACACTCACAGCACCACAT 59.819 50.000 0.00 0.00 0.00 3.21
772 773 0.827368 TACACACTCACAGCACCACA 59.173 50.000 0.00 0.00 0.00 4.17
773 774 1.217882 GTACACACTCACAGCACCAC 58.782 55.000 0.00 0.00 0.00 4.16
774 775 0.249280 CGTACACACTCACAGCACCA 60.249 55.000 0.00 0.00 0.00 4.17
775 776 1.557443 GCGTACACACTCACAGCACC 61.557 60.000 0.00 0.00 0.00 5.01
776 777 1.853319 GCGTACACACTCACAGCAC 59.147 57.895 0.00 0.00 0.00 4.40
777 778 1.660264 CGCGTACACACTCACAGCA 60.660 57.895 0.00 0.00 0.00 4.41
778 779 1.606350 GACGCGTACACACTCACAGC 61.606 60.000 13.97 0.00 0.00 4.40
779 780 1.002250 GGACGCGTACACACTCACAG 61.002 60.000 18.68 0.00 0.00 3.66
780 781 1.008194 GGACGCGTACACACTCACA 60.008 57.895 18.68 0.00 0.00 3.58
781 782 2.078914 CGGACGCGTACACACTCAC 61.079 63.158 23.49 0.65 0.00 3.51
782 783 2.062361 AACGGACGCGTACACACTCA 62.062 55.000 23.49 0.00 0.00 3.41
783 784 1.370900 AACGGACGCGTACACACTC 60.371 57.895 23.49 2.33 0.00 3.51
784 785 1.659335 CAACGGACGCGTACACACT 60.659 57.895 23.49 0.00 0.00 3.55
785 786 0.660005 TACAACGGACGCGTACACAC 60.660 55.000 23.49 4.01 0.00 3.82
786 787 0.240678 ATACAACGGACGCGTACACA 59.759 50.000 23.49 0.74 0.00 3.72
787 788 0.636733 CATACAACGGACGCGTACAC 59.363 55.000 23.49 10.14 0.00 2.90
788 789 0.240678 ACATACAACGGACGCGTACA 59.759 50.000 23.49 0.56 0.00 2.90
789 790 1.339711 AACATACAACGGACGCGTAC 58.660 50.000 13.97 13.29 0.00 3.67
790 791 1.720316 CAAACATACAACGGACGCGTA 59.280 47.619 13.97 0.00 0.00 4.42
791 792 0.509499 CAAACATACAACGGACGCGT 59.491 50.000 13.85 13.85 0.00 6.01
792 793 0.509499 ACAAACATACAACGGACGCG 59.491 50.000 3.53 3.53 0.00 6.01
793 794 2.673976 AACAAACATACAACGGACGC 57.326 45.000 0.00 0.00 0.00 5.19
794 795 3.002451 TCCAAACAAACATACAACGGACG 59.998 43.478 0.00 0.00 0.00 4.79
795 796 4.201930 TGTCCAAACAAACATACAACGGAC 60.202 41.667 0.00 0.00 40.63 4.79
796 797 3.945921 TGTCCAAACAAACATACAACGGA 59.054 39.130 0.00 0.00 30.70 4.69
797 798 4.039032 GTGTCCAAACAAACATACAACGG 58.961 43.478 0.00 0.00 37.08 4.44
798 799 4.663166 TGTGTCCAAACAAACATACAACG 58.337 39.130 0.00 0.00 37.08 4.10
799 800 6.252655 GTCTTGTGTCCAAACAAACATACAAC 59.747 38.462 0.00 0.00 39.47 3.32
800 801 6.071896 TGTCTTGTGTCCAAACAAACATACAA 60.072 34.615 0.00 0.00 39.47 2.41
801 802 5.416013 TGTCTTGTGTCCAAACAAACATACA 59.584 36.000 0.00 0.00 39.47 2.29
802 803 5.885881 TGTCTTGTGTCCAAACAAACATAC 58.114 37.500 0.00 0.00 39.47 2.39
803 804 5.883115 TCTGTCTTGTGTCCAAACAAACATA 59.117 36.000 0.00 0.00 39.47 2.29
804 805 4.704540 TCTGTCTTGTGTCCAAACAAACAT 59.295 37.500 0.00 0.00 39.47 2.71
805 806 4.075682 TCTGTCTTGTGTCCAAACAAACA 58.924 39.130 0.00 0.00 39.47 2.83
806 807 4.412207 GTCTGTCTTGTGTCCAAACAAAC 58.588 43.478 0.00 0.00 39.47 2.93
807 808 3.442273 GGTCTGTCTTGTGTCCAAACAAA 59.558 43.478 0.00 0.00 39.47 2.83
808 809 3.013921 GGTCTGTCTTGTGTCCAAACAA 58.986 45.455 0.00 0.00 37.08 2.83
809 810 2.026729 TGGTCTGTCTTGTGTCCAAACA 60.027 45.455 0.00 0.00 0.00 2.83
810 811 2.639065 TGGTCTGTCTTGTGTCCAAAC 58.361 47.619 0.00 0.00 0.00 2.93
811 812 3.278574 CTTGGTCTGTCTTGTGTCCAAA 58.721 45.455 0.00 0.00 35.10 3.28
812 813 2.421388 CCTTGGTCTGTCTTGTGTCCAA 60.421 50.000 0.00 0.00 34.47 3.53
813 814 1.140852 CCTTGGTCTGTCTTGTGTCCA 59.859 52.381 0.00 0.00 0.00 4.02
814 815 1.884235 CCTTGGTCTGTCTTGTGTCC 58.116 55.000 0.00 0.00 0.00 4.02
815 816 1.230324 GCCTTGGTCTGTCTTGTGTC 58.770 55.000 0.00 0.00 0.00 3.67
816 817 0.179018 GGCCTTGGTCTGTCTTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
817 818 0.179020 TGGCCTTGGTCTGTCTTGTG 60.179 55.000 3.32 0.00 0.00 3.33
818 819 0.109342 CTGGCCTTGGTCTGTCTTGT 59.891 55.000 3.32 0.00 0.00 3.16
819 820 0.109342 ACTGGCCTTGGTCTGTCTTG 59.891 55.000 3.32 0.00 0.00 3.02
820 821 0.846693 AACTGGCCTTGGTCTGTCTT 59.153 50.000 3.32 0.00 0.00 3.01
821 822 0.398318 GAACTGGCCTTGGTCTGTCT 59.602 55.000 3.32 0.00 0.00 3.41
822 823 0.606673 GGAACTGGCCTTGGTCTGTC 60.607 60.000 3.32 0.00 0.00 3.51
823 824 1.456287 GGAACTGGCCTTGGTCTGT 59.544 57.895 3.32 0.00 0.00 3.41
824 825 1.303643 GGGAACTGGCCTTGGTCTG 60.304 63.158 3.32 0.00 0.00 3.51
825 826 2.895424 CGGGAACTGGCCTTGGTCT 61.895 63.158 3.32 0.00 0.00 3.85
826 827 2.359975 CGGGAACTGGCCTTGGTC 60.360 66.667 3.32 4.92 0.00 4.02
827 828 4.660938 GCGGGAACTGGCCTTGGT 62.661 66.667 3.32 0.00 33.56 3.67
847 848 3.730761 CTGGTGCTGCCTGCGAAC 61.731 66.667 0.00 0.00 46.63 3.95
898 902 3.134127 GGGGCGTGGAACTGCATC 61.134 66.667 0.00 0.00 37.93 3.91
944 951 1.531578 GTTTCTTCGGTTGCTGGAGAC 59.468 52.381 0.00 0.00 0.00 3.36
960 967 1.076332 CGTGGGATGACTTCCGTTTC 58.924 55.000 1.51 0.00 46.52 2.78
965 972 2.754946 TTGTACGTGGGATGACTTCC 57.245 50.000 0.00 0.00 44.62 3.46
967 974 2.423577 GCTTTGTACGTGGGATGACTT 58.576 47.619 0.00 0.00 0.00 3.01
970 977 0.390603 CCGCTTTGTACGTGGGATGA 60.391 55.000 0.00 0.00 0.00 2.92
981 988 2.286365 TGGATTTCCTTCCGCTTTGT 57.714 45.000 0.00 0.00 38.74 2.83
1138 1145 1.553690 CCCTTGTCGTCCACCCATCT 61.554 60.000 0.00 0.00 0.00 2.90
1290 1297 1.374343 CGTCGGTGAGGTAGCTGCTA 61.374 60.000 5.02 5.02 0.00 3.49
1608 1615 0.178984 TGACGTAGGACCAGGACACA 60.179 55.000 0.00 0.00 0.00 3.72
1711 1718 3.702048 CAGGAAGTCCCCGGCGAA 61.702 66.667 9.30 0.00 36.42 4.70
1777 1784 0.819259 GCACCTGGCTTCACTGTGAA 60.819 55.000 20.95 20.95 40.25 3.18
1795 1802 1.559682 TGTTAGGAGGGAGGACAATGC 59.440 52.381 0.00 0.00 0.00 3.56
1796 1803 3.264450 AGTTGTTAGGAGGGAGGACAATG 59.736 47.826 0.00 0.00 33.39 2.82
1797 1804 3.532102 AGTTGTTAGGAGGGAGGACAAT 58.468 45.455 0.00 0.00 33.39 2.71
1798 1805 2.986050 AGTTGTTAGGAGGGAGGACAA 58.014 47.619 0.00 0.00 0.00 3.18
1799 1806 2.715763 AGTTGTTAGGAGGGAGGACA 57.284 50.000 0.00 0.00 0.00 4.02
1818 1825 6.334989 CCAGCTATGCATTTGATTTTGAGAA 58.665 36.000 3.54 0.00 0.00 2.87
1819 1826 5.163488 CCCAGCTATGCATTTGATTTTGAGA 60.163 40.000 3.54 0.00 0.00 3.27
1836 1871 2.627933 ACTTAGGTTTCCACCCAGCTA 58.372 47.619 0.00 0.00 45.63 3.32
1838 1873 3.079578 GTTACTTAGGTTTCCACCCAGC 58.920 50.000 0.00 0.00 45.63 4.85
1842 1877 3.682696 CCAGGTTACTTAGGTTTCCACC 58.317 50.000 0.00 0.00 44.67 4.61
1843 1878 3.079578 GCCAGGTTACTTAGGTTTCCAC 58.920 50.000 0.00 0.00 0.00 4.02
1858 1893 0.185901 AGTTGACCACATTGCCAGGT 59.814 50.000 0.00 0.00 38.63 4.00
1859 1894 1.270550 GAAGTTGACCACATTGCCAGG 59.729 52.381 0.00 0.00 0.00 4.45
1860 1895 2.233271 AGAAGTTGACCACATTGCCAG 58.767 47.619 0.00 0.00 0.00 4.85
1861 1896 2.361757 CAAGAAGTTGACCACATTGCCA 59.638 45.455 0.00 0.00 35.46 4.92
1862 1897 2.863704 GCAAGAAGTTGACCACATTGCC 60.864 50.000 0.00 0.00 36.40 4.52
1863 1898 2.223782 TGCAAGAAGTTGACCACATTGC 60.224 45.455 0.00 0.00 39.90 3.56
1930 1973 0.652592 AATATCTGCACAGCGTTCGC 59.347 50.000 9.24 9.24 0.00 4.70
1938 1981 3.538591 CAGCTTGGAGAATATCTGCACA 58.461 45.455 0.76 0.00 44.58 4.57
2238 2281 9.349713 ACTATACAAGATAGTCTTCTCAGAAGG 57.650 37.037 14.72 0.00 33.78 3.46
2276 2322 9.941664 CTAACAATTTCCACTTATCAGCATTAG 57.058 33.333 0.00 0.00 0.00 1.73
2277 2323 8.902806 CCTAACAATTTCCACTTATCAGCATTA 58.097 33.333 0.00 0.00 0.00 1.90
2278 2324 7.147846 CCCTAACAATTTCCACTTATCAGCATT 60.148 37.037 0.00 0.00 0.00 3.56
2279 2325 6.322201 CCCTAACAATTTCCACTTATCAGCAT 59.678 38.462 0.00 0.00 0.00 3.79
2280 2326 5.652014 CCCTAACAATTTCCACTTATCAGCA 59.348 40.000 0.00 0.00 0.00 4.41
2282 2328 8.980481 ATACCCTAACAATTTCCACTTATCAG 57.020 34.615 0.00 0.00 0.00 2.90
2283 2329 9.184523 CAATACCCTAACAATTTCCACTTATCA 57.815 33.333 0.00 0.00 0.00 2.15
2284 2330 8.135529 GCAATACCCTAACAATTTCCACTTATC 58.864 37.037 0.00 0.00 0.00 1.75
2319 2365 5.010617 ACCAGAACCATTAACGATGCTTTTT 59.989 36.000 0.00 0.00 34.25 1.94
2328 2374 5.704888 TGCAATAAACCAGAACCATTAACG 58.295 37.500 0.00 0.00 0.00 3.18
2376 2422 3.071874 TCCAGCAGGTAAACCATGAAG 57.928 47.619 1.26 0.00 38.89 3.02
2425 2471 2.480555 CACCCGCAGCATTTCGAC 59.519 61.111 0.00 0.00 0.00 4.20
2426 2472 3.430862 GCACCCGCAGCATTTCGA 61.431 61.111 0.00 0.00 38.36 3.71
2439 2485 0.251354 TCCTGCTCAGAATCTGCACC 59.749 55.000 5.18 0.00 32.91 5.01
2457 2503 0.035820 TTACACCAGACGGGCCATTC 60.036 55.000 4.39 0.00 42.05 2.67
2488 2534 3.191371 CCATTTGGTTCTCTTACAGGTGC 59.809 47.826 0.00 0.00 0.00 5.01
2614 2660 9.916397 GGAGTATACGAAACATTGAAATTACTG 57.084 33.333 0.00 0.00 0.00 2.74
2788 2961 1.680207 GCATCTCCAAATTCAGAGCCC 59.320 52.381 0.78 0.00 0.00 5.19
2810 2983 7.091533 TGACTATGTGAGTAGGATGGATCTA 57.908 40.000 0.00 0.00 39.06 1.98
2812 2985 6.849085 ATGACTATGTGAGTAGGATGGATC 57.151 41.667 0.00 0.00 39.06 3.36
2823 2996 6.507900 AGTTCGTCCAATATGACTATGTGAG 58.492 40.000 0.00 0.00 32.97 3.51
2824 2997 6.465439 AGTTCGTCCAATATGACTATGTGA 57.535 37.500 0.00 0.00 32.97 3.58
2825 2998 5.399596 CGAGTTCGTCCAATATGACTATGTG 59.600 44.000 0.00 0.00 32.97 3.21
2827 3000 5.758924 TCGAGTTCGTCCAATATGACTATG 58.241 41.667 1.07 0.00 40.80 2.23
2828 3001 5.048643 CCTCGAGTTCGTCCAATATGACTAT 60.049 44.000 12.31 0.00 40.80 2.12
2829 3002 4.275196 CCTCGAGTTCGTCCAATATGACTA 59.725 45.833 12.31 0.00 40.80 2.59
2830 3003 3.066900 CCTCGAGTTCGTCCAATATGACT 59.933 47.826 12.31 0.00 40.80 3.41
2831 3004 3.372954 CCTCGAGTTCGTCCAATATGAC 58.627 50.000 12.31 0.00 40.80 3.06
2835 3235 0.458669 GCCCTCGAGTTCGTCCAATA 59.541 55.000 12.31 0.00 40.80 1.90
2898 3299 1.532437 GCACCTGCAAAAAGGAAATGC 59.468 47.619 0.00 0.00 40.02 3.56
2922 3323 4.333926 GGAGCACTTGATAAAGATGTGTCC 59.666 45.833 0.00 0.03 0.00 4.02
2940 3341 4.800249 GCTTTTGGATCAAACATTGGAGCA 60.800 41.667 0.00 0.00 33.01 4.26
2988 3389 2.044860 GAGTCAACGAGTCGAACAGTG 58.955 52.381 21.50 8.81 0.00 3.66
3000 3401 3.073678 TGGGTTCATGAATGAGTCAACG 58.926 45.455 12.12 0.00 40.50 4.10
3159 3560 6.720748 TGCACATGCCATATAAACCAAGATAT 59.279 34.615 0.49 0.00 41.18 1.63
3293 3696 2.143122 TCAGTTAGCCAACGCTCTTTG 58.857 47.619 0.00 0.00 43.95 2.77
3294 3697 2.543777 TCAGTTAGCCAACGCTCTTT 57.456 45.000 0.00 0.00 43.95 2.52
3305 3708 2.424956 CAGGGAGGCATTTTCAGTTAGC 59.575 50.000 0.00 0.00 0.00 3.09
3370 3773 3.201708 AGGAAACAGATTCATCCTCCCAG 59.798 47.826 0.00 0.00 37.80 4.45
3490 3893 9.787435 ATAAACTGTAGAAAGAACACCATTACA 57.213 29.630 0.00 0.00 0.00 2.41
3579 3982 4.832266 ACATTTCAAAATCTGGGCAGTGTA 59.168 37.500 0.00 0.00 0.00 2.90
3686 4479 7.431376 GCTAAAATAAGACGGAGCAAATTTACC 59.569 37.037 0.00 0.00 0.00 2.85
3855 4648 0.394192 TGAACTGAGGTGGTCTGCAG 59.606 55.000 7.63 7.63 34.65 4.41
3875 4668 1.538849 GCAGTTGTTTGGGCAAAGAGG 60.539 52.381 0.00 0.00 0.00 3.69
3900 4693 6.547510 ACTTTGGGCCAATTATATCTTCTGTC 59.452 38.462 21.65 0.00 0.00 3.51
3970 4763 5.917447 CAGTTCAGAAAGCTAAGAAAAAGCC 59.083 40.000 0.00 0.00 41.02 4.35
3971 4764 6.634837 GTCAGTTCAGAAAGCTAAGAAAAAGC 59.365 38.462 0.00 0.00 40.40 3.51
3996 4789 1.616620 CGAAACATGGAAATGCGTGG 58.383 50.000 0.00 0.00 0.00 4.94
4113 4906 1.202510 TGTTGCAGTTTCATTGGCACC 60.203 47.619 0.00 0.00 35.74 5.01
4714 5507 1.171308 CTGTTCCCTGCAACATGAGG 58.829 55.000 0.00 0.00 35.70 3.86
4767 5560 5.832595 TGTCATCATCAAGGTTCCTTCAAAA 59.167 36.000 0.60 0.00 0.00 2.44
5002 5814 9.086758 GAGAATTAAATCATGGGATGAGGAATT 57.913 33.333 0.00 0.00 43.53 2.17
5003 5815 8.454494 AGAGAATTAAATCATGGGATGAGGAAT 58.546 33.333 0.00 0.00 43.53 3.01
5007 5819 7.523380 GCCAAGAGAATTAAATCATGGGATGAG 60.523 40.741 10.31 0.00 43.53 2.90
5054 5882 9.120538 GTTCAATACCTCCATTTATAGCTTTCA 57.879 33.333 0.00 0.00 0.00 2.69
5089 5917 6.994496 CACCCTGCAAGAGAAAATCTCATATA 59.006 38.462 9.82 0.00 45.73 0.86
5239 6067 4.836125 TGTTGAGTTCATTGCTTTCCTC 57.164 40.909 0.00 0.00 0.00 3.71
5281 6109 0.390124 CAGCACCAAACCAAGCACAT 59.610 50.000 0.00 0.00 0.00 3.21
5507 6338 2.851195 ACTCACAAGTTGATGGGACAC 58.149 47.619 10.54 0.00 33.56 3.67
5946 6779 3.949754 GCTGATCATCTTGGTTTCCATCA 59.050 43.478 0.00 0.00 31.53 3.07
6473 7318 7.164171 CGCTGTACAATATTGTTTCAACTATGC 59.836 37.037 25.31 19.20 42.35 3.14
6545 7417 2.299013 TGTGCCTATTCTTGACTGACGT 59.701 45.455 0.00 0.00 0.00 4.34
6715 7587 4.711846 TCAGCACCTCATAGTTCACTGTAT 59.288 41.667 0.00 0.00 0.00 2.29
6716 7588 4.086457 TCAGCACCTCATAGTTCACTGTA 58.914 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.