Multiple sequence alignment - TraesCS5D01G228300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G228300 chr5D 100.000 5575 0 0 1 5575 335775657 335770083 0.000000e+00 10296.0
1 TraesCS5D01G228300 chr5B 88.210 4962 281 140 1 4823 393671563 393666767 0.000000e+00 5642.0
2 TraesCS5D01G228300 chr5B 86.000 450 41 8 4963 5392 393663396 393662949 3.930000e-126 462.0
3 TraesCS5D01G228300 chr5A 89.595 1826 88 40 2859 4646 436890201 436888440 0.000000e+00 2226.0
4 TraesCS5D01G228300 chr5A 88.387 1438 89 32 1001 2399 436892281 436890883 0.000000e+00 1659.0
5 TraesCS5D01G228300 chr5A 81.309 947 91 41 1 895 436893308 436892396 0.000000e+00 689.0
6 TraesCS5D01G228300 chr5A 88.410 371 39 4 5067 5434 436887792 436887423 1.430000e-120 444.0
7 TraesCS5D01G228300 chr5A 87.823 271 18 7 2452 2711 436890569 436890303 2.520000e-78 303.0
8 TraesCS5D01G228300 chr5A 91.429 175 7 6 4657 4823 436888404 436888230 3.360000e-57 233.0
9 TraesCS5D01G228300 chr7D 86.966 445 54 4 4130 4571 598623510 598623067 1.080000e-136 497.0
10 TraesCS5D01G228300 chr7D 94.488 127 5 2 5417 5542 518645157 518645282 1.580000e-45 195.0
11 TraesCS5D01G228300 chr7D 77.778 252 41 12 3317 3561 598624151 598623908 2.090000e-29 141.0
12 TraesCS5D01G228300 chr7A 86.742 445 55 4 4130 4571 691150044 691149601 5.020000e-135 492.0
13 TraesCS5D01G228300 chr7A 80.462 476 66 16 4885 5340 694346051 694345583 6.920000e-89 339.0
14 TraesCS5D01G228300 chr7A 76.471 272 48 12 3299 3561 691150706 691150442 3.500000e-27 134.0
15 TraesCS5D01G228300 chr7B 87.879 330 38 2 4244 4571 678125404 678125075 2.440000e-103 387.0
16 TraesCS5D01G228300 chr7B 82.547 212 37 0 3852 4063 678125902 678125691 2.650000e-43 187.0
17 TraesCS5D01G228300 chr7B 96.970 99 2 1 5426 5523 705577852 705577754 1.240000e-36 165.0
18 TraesCS5D01G228300 chr7B 76.727 275 42 14 3299 3561 678126270 678126006 3.500000e-27 134.0
19 TraesCS5D01G228300 chr7B 90.722 97 9 0 4130 4226 678125608 678125512 4.530000e-26 130.0
20 TraesCS5D01G228300 chr1A 80.215 465 60 21 4891 5334 515872892 515872439 2.510000e-83 320.0
21 TraesCS5D01G228300 chr6A 79.851 402 72 7 3851 4245 133760719 133761118 9.140000e-73 285.0
22 TraesCS5D01G228300 chr6A 91.667 180 14 1 4240 4419 133761215 133761393 1.200000e-61 248.0
23 TraesCS5D01G228300 chr6A 85.915 142 18 2 1246 1386 133756312 133756452 3.480000e-32 150.0
24 TraesCS5D01G228300 chr6B 91.713 181 14 1 4239 4419 196679377 196679556 3.330000e-62 250.0
25 TraesCS5D01G228300 chr6B 83.099 142 22 2 1246 1386 196674963 196675103 1.630000e-25 128.0
26 TraesCS5D01G228300 chr6D 90.608 181 16 1 4239 4419 108782416 108782595 7.220000e-59 239.0
27 TraesCS5D01G228300 chr6D 98.319 119 1 1 5425 5542 403026567 403026685 2.040000e-49 207.0
28 TraesCS5D01G228300 chr6D 97.458 118 2 1 5426 5542 181694828 181694945 3.410000e-47 200.0
29 TraesCS5D01G228300 chr6D 94.915 118 5 1 5426 5542 75867161 75867278 3.430000e-42 183.0
30 TraesCS5D01G228300 chr6D 83.803 142 21 2 1246 1386 108778195 108778335 3.500000e-27 134.0
31 TraesCS5D01G228300 chr6D 100.000 36 0 0 5540 5575 181694970 181695005 3.600000e-07 67.6
32 TraesCS5D01G228300 chr2B 81.915 282 48 3 5063 5342 773465152 773465432 9.340000e-58 235.0
33 TraesCS5D01G228300 chr2D 99.145 117 1 0 5426 5542 9524724 9524840 1.570000e-50 211.0
34 TraesCS5D01G228300 chr2D 98.291 117 2 0 5426 5542 264305300 264305416 7.320000e-49 206.0
35 TraesCS5D01G228300 chr4D 97.436 117 3 0 5426 5542 320277287 320277403 3.410000e-47 200.0
36 TraesCS5D01G228300 chr4A 96.694 121 3 1 5423 5542 139614657 139614777 3.410000e-47 200.0
37 TraesCS5D01G228300 chr4A 95.763 118 4 1 5426 5542 729050679 729050796 7.370000e-44 189.0
38 TraesCS5D01G228300 chr1D 97.458 118 2 1 5426 5542 491983628 491983745 3.410000e-47 200.0
39 TraesCS5D01G228300 chr1B 95.312 128 3 2 5416 5542 133439650 133439775 3.410000e-47 200.0
40 TraesCS5D01G228300 chrUn 95.763 118 4 1 5426 5542 338658489 338658372 7.370000e-44 189.0
41 TraesCS5D01G228300 chrUn 89.815 108 4 3 5428 5528 50098306 50098199 1.260000e-26 132.0
42 TraesCS5D01G228300 chrUn 100.000 36 0 0 5540 5575 421223829 421223864 3.600000e-07 67.6
43 TraesCS5D01G228300 chrUn 100.000 36 0 0 5540 5575 467823932 467823897 3.600000e-07 67.6
44 TraesCS5D01G228300 chr3A 93.333 45 1 2 5532 5575 644934419 644934376 1.300000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G228300 chr5D 335770083 335775657 5574 True 10296.000000 10296 100.00000 1 5575 1 chr5D.!!$R1 5574
1 TraesCS5D01G228300 chr5B 393662949 393671563 8614 True 3052.000000 5642 87.10500 1 5392 2 chr5B.!!$R1 5391
2 TraesCS5D01G228300 chr5A 436887423 436893308 5885 True 925.666667 2226 87.82550 1 5434 6 chr5A.!!$R1 5433
3 TraesCS5D01G228300 chr7D 598623067 598624151 1084 True 319.000000 497 82.37200 3317 4571 2 chr7D.!!$R1 1254
4 TraesCS5D01G228300 chr7A 691149601 691150706 1105 True 313.000000 492 81.60650 3299 4571 2 chr7A.!!$R2 1272
5 TraesCS5D01G228300 chr7B 678125075 678126270 1195 True 209.500000 387 84.46875 3299 4571 4 chr7B.!!$R2 1272
6 TraesCS5D01G228300 chr6A 133760719 133761393 674 False 266.500000 285 85.75900 3851 4419 2 chr6A.!!$F2 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 382 1.028905 CTTGGCTCCTAGTCTCTCGG 58.971 60.0 0.00 0.00 0.00 4.63 F
1389 1531 0.178941 AGGAGTGGGACTGGTACGTT 60.179 55.0 0.00 0.00 0.00 3.99 F
2275 2452 0.041312 GTGTACTTTGGCACAGCACG 60.041 55.0 0.00 0.00 42.39 5.34 F
2835 3322 0.244994 GACGCAGAAGCTTCTCCTGA 59.755 55.0 26.18 0.00 36.22 3.86 F
3567 4098 0.242017 GGCTTCCACGTACGTACTGT 59.758 55.0 22.34 18.14 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2255 1.528161 GGTTAAGTTGTGACCGAACGG 59.472 52.381 11.83 11.83 42.03 4.44 R
3140 3639 0.101399 AATCGCTGACTCCGCTGTAG 59.899 55.000 0.00 0.00 0.00 2.74 R
3271 3792 0.105964 TTCCTTCGTGTCACCCAGTG 59.894 55.000 0.00 0.00 34.45 3.66 R
3838 4370 0.392706 TCGTTCTGCACATCACCACT 59.607 50.000 0.00 0.00 0.00 4.00 R
5523 9747 0.034186 GGATGGTGGATTCAGGCACA 60.034 55.000 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 2.267961 GTCCCGTCCCACCATCAC 59.732 66.667 0.00 0.00 0.00 3.06
207 239 4.144703 GGTTCGGCGACCTCTCCC 62.145 72.222 10.16 0.00 36.73 4.30
277 309 2.106332 CTACGTGATCACCCGGCC 59.894 66.667 20.03 0.00 0.00 6.13
343 376 1.222113 GGTGGCTTGGCTCCTAGTC 59.778 63.158 7.84 0.00 0.00 2.59
349 382 1.028905 CTTGGCTCCTAGTCTCTCGG 58.971 60.000 0.00 0.00 0.00 4.63
411 451 1.141881 ATCACATGACTCGGACGCC 59.858 57.895 0.00 0.00 0.00 5.68
549 589 3.033909 TGCACATACTCCATCTGCTAGT 58.966 45.455 0.00 0.00 30.44 2.57
575 617 1.391933 ATACGCATGTCTCGCTCCCA 61.392 55.000 0.00 0.00 0.00 4.37
593 635 1.591158 CCACGAACATTTATCCGTCCG 59.409 52.381 0.00 0.00 32.50 4.79
594 636 1.591158 CACGAACATTTATCCGTCCGG 59.409 52.381 0.00 0.00 32.50 5.14
646 693 4.692625 CCCCGCATCTCTATCAATTAACTG 59.307 45.833 0.00 0.00 0.00 3.16
674 721 1.531840 GGAGAGATGGCTAGCCGGA 60.532 63.158 28.28 13.02 39.42 5.14
737 816 1.747552 GCTTAGCTTAACCCTCCTGCC 60.748 57.143 0.00 0.00 0.00 4.85
770 849 4.430007 CTTACCCGATCGATCAAGTTTCA 58.570 43.478 24.40 4.27 0.00 2.69
773 852 3.871594 ACCCGATCGATCAAGTTTCATTC 59.128 43.478 24.40 0.00 0.00 2.67
774 853 4.122776 CCCGATCGATCAAGTTTCATTCT 58.877 43.478 24.40 0.00 0.00 2.40
775 854 5.163447 ACCCGATCGATCAAGTTTCATTCTA 60.163 40.000 24.40 0.00 0.00 2.10
795 878 6.806388 TCTAGTATATAAACATGCGGACGA 57.194 37.500 0.00 0.00 0.00 4.20
896 984 3.478274 GCCAGCCTCCCTCTCCAG 61.478 72.222 0.00 0.00 0.00 3.86
897 985 2.040278 CCAGCCTCCCTCTCCAGT 59.960 66.667 0.00 0.00 0.00 4.00
902 990 1.700368 CCTCCCTCTCCAGTCTCCA 59.300 63.158 0.00 0.00 0.00 3.86
921 1009 4.207281 TGCCGGCTCCTCGAATCG 62.207 66.667 29.70 0.00 0.00 3.34
932 1020 1.400371 CCTCGAATCGGAGATAGTGCG 60.400 57.143 1.76 0.00 45.12 5.34
953 1041 1.064906 ACAGTAGCCCAGCTCTACGTA 60.065 52.381 5.65 0.00 40.85 3.57
1020 1141 1.973812 GGGTGCTGCCTTCTTGTCC 60.974 63.158 0.00 0.00 37.43 4.02
1090 1211 1.136000 TGTTTGCGCTGACGATGAATG 60.136 47.619 9.73 0.00 43.93 2.67
1106 1227 3.644823 TGAATGTTTGCTTGTCATGCAG 58.355 40.909 12.61 0.00 41.71 4.41
1113 1241 5.240403 TGTTTGCTTGTCATGCAGTATGTAA 59.760 36.000 12.61 2.13 41.71 2.41
1389 1531 0.178941 AGGAGTGGGACTGGTACGTT 60.179 55.000 0.00 0.00 0.00 3.99
1454 1600 0.393808 TAACAAATCCAGCTCCGGCC 60.394 55.000 0.00 0.00 39.73 6.13
1455 1601 3.204827 CAAATCCAGCTCCGGCCG 61.205 66.667 21.04 21.04 39.73 6.13
1722 1879 1.267806 CAGGTACGTACGTGACCAAGT 59.732 52.381 33.87 18.06 42.82 3.16
1740 1901 4.202010 CCAAGTTACTTTGTGTTGTCTGGG 60.202 45.833 0.00 0.00 0.00 4.45
1752 1917 3.826157 TGTTGTCTGGGTTGAATTGATCC 59.174 43.478 0.00 0.00 0.00 3.36
1776 1941 5.661056 TCGATCCTAAGTTCTCAACACAT 57.339 39.130 0.00 0.00 0.00 3.21
1777 1942 5.410924 TCGATCCTAAGTTCTCAACACATG 58.589 41.667 0.00 0.00 0.00 3.21
1845 2015 3.885521 GGCTTGCTCATGGCGCTC 61.886 66.667 7.64 0.00 45.43 5.03
2037 2207 0.179062 CTGCCTGCCTCACCATCTAC 60.179 60.000 0.00 0.00 0.00 2.59
2057 2227 2.837591 ACCACACACATAGGCATAGTCA 59.162 45.455 0.00 0.00 0.00 3.41
2060 2230 4.115516 CACACACATAGGCATAGTCACTC 58.884 47.826 0.00 0.00 0.00 3.51
2061 2231 3.133003 ACACACATAGGCATAGTCACTCC 59.867 47.826 0.00 0.00 0.00 3.85
2063 2233 3.639094 ACACATAGGCATAGTCACTCCTC 59.361 47.826 0.00 0.00 0.00 3.71
2075 2252 3.447944 AGTCACTCCTCGTATTTCCCTTC 59.552 47.826 0.00 0.00 0.00 3.46
2076 2253 3.447944 GTCACTCCTCGTATTTCCCTTCT 59.552 47.826 0.00 0.00 0.00 2.85
2077 2254 4.081586 GTCACTCCTCGTATTTCCCTTCTT 60.082 45.833 0.00 0.00 0.00 2.52
2078 2255 4.159879 TCACTCCTCGTATTTCCCTTCTTC 59.840 45.833 0.00 0.00 0.00 2.87
2110 2287 6.201425 GTCACAACTTAACCGATCACAGTTTA 59.799 38.462 0.00 0.00 0.00 2.01
2216 2393 3.687698 GCAATCATAACCCTTGTGTACGT 59.312 43.478 0.00 0.00 0.00 3.57
2217 2394 4.871557 GCAATCATAACCCTTGTGTACGTA 59.128 41.667 0.00 0.00 0.00 3.57
2218 2395 5.220529 GCAATCATAACCCTTGTGTACGTAC 60.221 44.000 18.90 18.90 0.00 3.67
2219 2396 4.095410 TCATAACCCTTGTGTACGTACG 57.905 45.455 20.18 15.01 0.00 3.67
2243 2420 3.062466 CCGGCGAGTCTGACCAGA 61.062 66.667 9.30 0.00 34.56 3.86
2244 2421 2.418910 CCGGCGAGTCTGACCAGAT 61.419 63.158 9.30 0.00 39.97 2.90
2245 2422 1.101635 CCGGCGAGTCTGACCAGATA 61.102 60.000 9.30 0.00 39.97 1.98
2246 2423 0.955178 CGGCGAGTCTGACCAGATAT 59.045 55.000 0.00 0.00 39.97 1.63
2275 2452 0.041312 GTGTACTTTGGCACAGCACG 60.041 55.000 0.00 0.00 42.39 5.34
2297 2481 2.959030 CCAGATAGTACAGCTACAGCCA 59.041 50.000 0.00 0.00 43.38 4.75
2452 2929 0.968901 TGCTCCCGTACAGTACAGGG 60.969 60.000 24.14 24.14 41.08 4.45
2621 3102 7.001073 AGAACAGAGCAGGTAAAAATCTCTTT 58.999 34.615 0.00 0.00 32.32 2.52
2645 3129 0.753867 TGAGTAGCACCACGGTTTCA 59.246 50.000 0.00 0.00 0.00 2.69
2662 3146 0.970640 TCAAGTAGCCAGGTTGCGTA 59.029 50.000 0.00 0.00 36.02 4.42
2674 3161 2.699768 TTGCGTATGCCCTGCTTGC 61.700 57.895 4.05 0.00 41.78 4.01
2693 3180 4.473520 CGGCTCGGCTGGTTCCAT 62.474 66.667 0.00 0.00 0.00 3.41
2694 3181 2.825836 GGCTCGGCTGGTTCCATG 60.826 66.667 0.00 0.00 0.00 3.66
2793 3280 3.731136 GTGCTCCACACGCAGAAA 58.269 55.556 0.00 0.00 40.07 2.52
2799 3286 2.213499 CTCCACACGCAGAAACTTCTT 58.787 47.619 0.00 0.00 34.74 2.52
2800 3287 2.210116 TCCACACGCAGAAACTTCTTC 58.790 47.619 0.00 0.00 34.74 2.87
2801 3288 2.158957 TCCACACGCAGAAACTTCTTCT 60.159 45.455 0.00 0.00 34.74 2.85
2804 3291 3.557595 CACACGCAGAAACTTCTTCTTCT 59.442 43.478 0.00 0.00 34.74 2.85
2806 3293 4.271291 ACACGCAGAAACTTCTTCTTCTTC 59.729 41.667 0.00 0.00 34.74 2.87
2807 3294 4.509600 CACGCAGAAACTTCTTCTTCTTCT 59.490 41.667 0.00 0.00 34.74 2.85
2808 3295 4.747605 ACGCAGAAACTTCTTCTTCTTCTC 59.252 41.667 0.00 0.00 34.74 2.87
2810 3297 5.235186 CGCAGAAACTTCTTCTTCTTCTCAA 59.765 40.000 0.00 0.00 34.74 3.02
2812 3299 7.475840 GCAGAAACTTCTTCTTCTTCTCAAAA 58.524 34.615 0.00 0.00 34.74 2.44
2813 3300 7.430793 GCAGAAACTTCTTCTTCTTCTCAAAAC 59.569 37.037 0.00 0.00 34.74 2.43
2817 3304 9.892130 AAACTTCTTCTTCTTCTCAAAACTAGA 57.108 29.630 0.00 0.00 0.00 2.43
2818 3305 8.880878 ACTTCTTCTTCTTCTCAAAACTAGAC 57.119 34.615 0.00 0.00 0.00 2.59
2820 3307 5.921408 TCTTCTTCTTCTCAAAACTAGACGC 59.079 40.000 0.00 0.00 0.00 5.19
2822 3309 5.223382 TCTTCTTCTCAAAACTAGACGCAG 58.777 41.667 0.00 0.00 0.00 5.18
2823 3310 4.848562 TCTTCTCAAAACTAGACGCAGA 57.151 40.909 0.00 0.00 0.00 4.26
2824 3311 5.196341 TCTTCTCAAAACTAGACGCAGAA 57.804 39.130 0.00 0.00 0.00 3.02
2825 3312 5.223382 TCTTCTCAAAACTAGACGCAGAAG 58.777 41.667 0.00 6.79 37.70 2.85
2826 3313 3.318017 TCTCAAAACTAGACGCAGAAGC 58.682 45.455 0.00 0.00 37.42 3.86
2829 3316 3.741344 TCAAAACTAGACGCAGAAGCTTC 59.259 43.478 19.11 19.11 39.16 3.86
2831 3318 2.931512 ACTAGACGCAGAAGCTTCTC 57.068 50.000 26.18 18.38 45.15 2.87
2832 3319 1.474879 ACTAGACGCAGAAGCTTCTCC 59.525 52.381 26.18 17.08 45.15 3.71
2833 3320 1.748493 CTAGACGCAGAAGCTTCTCCT 59.252 52.381 26.18 20.20 45.15 3.69
2834 3321 0.246086 AGACGCAGAAGCTTCTCCTG 59.754 55.000 26.18 19.34 45.15 3.86
2835 3322 0.244994 GACGCAGAAGCTTCTCCTGA 59.755 55.000 26.18 0.00 36.22 3.86
2836 3323 0.901124 ACGCAGAAGCTTCTCCTGAT 59.099 50.000 26.18 7.62 39.10 2.90
2837 3324 1.134848 ACGCAGAAGCTTCTCCTGATC 60.135 52.381 26.18 9.94 39.10 2.92
2838 3325 1.569708 GCAGAAGCTTCTCCTGATCG 58.430 55.000 26.18 13.95 34.74 3.69
2839 3326 1.134848 GCAGAAGCTTCTCCTGATCGT 60.135 52.381 26.18 0.00 34.74 3.73
2840 3327 2.099921 GCAGAAGCTTCTCCTGATCGTA 59.900 50.000 26.18 0.00 34.74 3.43
2841 3328 3.701241 CAGAAGCTTCTCCTGATCGTAC 58.299 50.000 26.18 0.00 34.74 3.67
2842 3329 2.691011 AGAAGCTTCTCCTGATCGTACC 59.309 50.000 23.49 0.00 29.94 3.34
2843 3330 2.145397 AGCTTCTCCTGATCGTACCA 57.855 50.000 0.00 0.00 0.00 3.25
2844 3331 1.751924 AGCTTCTCCTGATCGTACCAC 59.248 52.381 0.00 0.00 0.00 4.16
2845 3332 1.751924 GCTTCTCCTGATCGTACCACT 59.248 52.381 0.00 0.00 0.00 4.00
2846 3333 2.950309 GCTTCTCCTGATCGTACCACTA 59.050 50.000 0.00 0.00 0.00 2.74
2847 3334 3.003897 GCTTCTCCTGATCGTACCACTAG 59.996 52.174 0.00 0.00 0.00 2.57
2848 3335 3.928005 TCTCCTGATCGTACCACTAGT 57.072 47.619 0.00 0.00 0.00 2.57
2849 3336 5.363562 TTCTCCTGATCGTACCACTAGTA 57.636 43.478 0.00 0.00 0.00 1.82
2850 3337 4.958509 TCTCCTGATCGTACCACTAGTAG 58.041 47.826 0.00 0.00 0.00 2.57
2851 3338 4.408270 TCTCCTGATCGTACCACTAGTAGT 59.592 45.833 0.00 0.00 0.00 2.73
2852 3339 5.104610 TCTCCTGATCGTACCACTAGTAGTT 60.105 44.000 0.00 0.00 0.00 2.24
2853 3340 5.121811 TCCTGATCGTACCACTAGTAGTTC 58.878 45.833 0.00 0.00 0.00 3.01
2854 3341 4.025061 CCTGATCGTACCACTAGTAGTTCG 60.025 50.000 12.85 12.85 0.00 3.95
2855 3342 4.758688 TGATCGTACCACTAGTAGTTCGA 58.241 43.478 21.09 21.09 0.00 3.71
2856 3343 5.363101 TGATCGTACCACTAGTAGTTCGAT 58.637 41.667 26.78 26.78 39.01 3.59
2857 3344 5.464722 TGATCGTACCACTAGTAGTTCGATC 59.535 44.000 34.39 34.39 46.58 3.69
2939 3426 1.194772 GTTCGTGCTTAACTGCAGGTC 59.805 52.381 19.93 0.00 45.54 3.85
3005 3492 2.104967 CGGGATAGGCCATCGGTAATA 58.895 52.381 5.01 0.00 38.95 0.98
3006 3493 2.100916 CGGGATAGGCCATCGGTAATAG 59.899 54.545 5.01 0.00 38.95 1.73
3009 3496 4.099113 GGGATAGGCCATCGGTAATAGTAC 59.901 50.000 5.01 0.00 38.95 2.73
3010 3497 4.201990 GGATAGGCCATCGGTAATAGTACG 60.202 50.000 5.01 0.00 34.12 3.67
3011 3498 2.590821 AGGCCATCGGTAATAGTACGT 58.409 47.619 5.01 0.00 0.00 3.57
3012 3499 3.754965 AGGCCATCGGTAATAGTACGTA 58.245 45.455 5.01 0.00 0.00 3.57
3013 3500 3.503748 AGGCCATCGGTAATAGTACGTAC 59.496 47.826 18.10 18.10 0.00 3.67
3014 3501 3.503748 GGCCATCGGTAATAGTACGTACT 59.496 47.826 29.62 29.62 40.24 2.73
3015 3502 4.695455 GGCCATCGGTAATAGTACGTACTA 59.305 45.833 31.69 31.69 42.43 1.82
3017 3504 5.409826 GCCATCGGTAATAGTACGTACTACT 59.590 44.000 32.09 25.81 41.18 2.57
3018 3505 6.619446 GCCATCGGTAATAGTACGTACTACTG 60.619 46.154 32.09 26.56 41.18 2.74
3019 3506 5.907197 TCGGTAATAGTACGTACTACTGC 57.093 43.478 32.09 25.72 41.18 4.40
3020 3507 5.601662 TCGGTAATAGTACGTACTACTGCT 58.398 41.667 32.09 20.34 41.18 4.24
3021 3508 5.463392 TCGGTAATAGTACGTACTACTGCTG 59.537 44.000 32.09 28.60 41.18 4.41
3022 3509 5.333645 CGGTAATAGTACGTACTACTGCTGG 60.334 48.000 32.09 18.86 41.18 4.85
3023 3510 4.564940 AATAGTACGTACTACTGCTGGC 57.435 45.455 32.09 1.11 41.18 4.85
3024 3511 1.830279 AGTACGTACTACTGCTGGCA 58.170 50.000 26.36 0.00 34.08 4.92
3025 3512 2.376109 AGTACGTACTACTGCTGGCAT 58.624 47.619 26.36 0.00 34.08 4.40
3026 3513 2.358267 AGTACGTACTACTGCTGGCATC 59.642 50.000 26.36 0.00 34.08 3.91
3027 3514 1.182667 ACGTACTACTGCTGGCATCA 58.817 50.000 0.00 0.00 0.00 3.07
3028 3515 1.757118 ACGTACTACTGCTGGCATCAT 59.243 47.619 0.00 0.00 0.00 2.45
3038 3525 0.526954 CTGGCATCATTTGAAGCGCC 60.527 55.000 2.29 10.47 39.43 6.53
3124 3623 2.515523 CAATCGAGCAGCTGGGGG 60.516 66.667 17.12 0.00 0.00 5.40
3135 3634 1.221021 GCTGGGGGCTACACTACAC 59.779 63.158 0.00 0.00 38.06 2.90
3136 3635 1.265454 GCTGGGGGCTACACTACACT 61.265 60.000 0.00 0.00 38.06 3.55
3138 3637 1.755380 CTGGGGGCTACACTACACTAC 59.245 57.143 0.00 0.00 0.00 2.73
3140 3639 1.479730 GGGGGCTACACTACACTACAC 59.520 57.143 0.00 0.00 0.00 2.90
3147 3646 3.826236 ACACTACACTACACTACAGCG 57.174 47.619 0.00 0.00 0.00 5.18
3157 3656 1.674651 ACTACAGCGGAGTCAGCGA 60.675 57.895 9.69 0.00 40.04 4.93
3222 3726 5.485353 TGACTCCACTTAAGTCTCCATGAAT 59.515 40.000 4.77 0.00 42.93 2.57
3223 3727 5.983540 ACTCCACTTAAGTCTCCATGAATC 58.016 41.667 4.77 0.00 0.00 2.52
3228 3732 7.565029 TCCACTTAAGTCTCCATGAATCTATCA 59.435 37.037 4.77 0.00 43.67 2.15
3249 3770 4.273235 TCAATTAACTGCATGTATCCGCTG 59.727 41.667 0.00 0.00 0.00 5.18
3263 3784 6.399743 TGTATCCGCTGTGAATTTGTTACTA 58.600 36.000 0.00 0.00 0.00 1.82
3264 3785 5.796350 ATCCGCTGTGAATTTGTTACTAC 57.204 39.130 0.00 0.00 0.00 2.73
3265 3786 3.998341 TCCGCTGTGAATTTGTTACTACC 59.002 43.478 0.00 0.00 0.00 3.18
3267 3788 3.181524 CGCTGTGAATTTGTTACTACCCG 60.182 47.826 0.00 0.00 0.00 5.28
3268 3789 3.126343 GCTGTGAATTTGTTACTACCCGG 59.874 47.826 0.00 0.00 0.00 5.73
3271 3792 3.686241 GTGAATTTGTTACTACCCGGGTC 59.314 47.826 34.27 16.79 0.00 4.46
3272 3793 3.327172 TGAATTTGTTACTACCCGGGTCA 59.673 43.478 34.27 19.68 0.00 4.02
3273 3794 2.837532 TTTGTTACTACCCGGGTCAC 57.162 50.000 34.27 22.40 0.00 3.67
3562 4093 3.667087 TACGGCTTCCACGTACGT 58.333 55.556 16.72 16.72 44.93 3.57
3566 4097 0.795735 CGGCTTCCACGTACGTACTG 60.796 60.000 22.34 17.94 0.00 2.74
3567 4098 0.242017 GGCTTCCACGTACGTACTGT 59.758 55.000 22.34 18.14 0.00 3.55
3589 4120 8.585881 ACTGTACACTACATGTTTCTGATTACT 58.414 33.333 2.30 0.00 43.19 2.24
3632 4164 0.389687 GCTAGCTGATCCATCGAGCC 60.390 60.000 7.70 0.00 34.02 4.70
3769 4301 1.970640 TGCAGCTCTGAACAAGGTCTA 59.029 47.619 0.29 0.00 0.00 2.59
3790 4322 7.984050 GGTCTATTCTTCACTTCATTCTGATGA 59.016 37.037 0.00 0.00 40.46 2.92
3791 4323 9.033481 GTCTATTCTTCACTTCATTCTGATGAG 57.967 37.037 0.00 0.00 42.90 2.90
3823 4355 5.104941 TGACATAGCTGCTACCTGTAAATGT 60.105 40.000 12.26 10.62 0.00 2.71
3824 4356 6.097696 TGACATAGCTGCTACCTGTAAATGTA 59.902 38.462 12.26 0.00 0.00 2.29
3826 4358 6.323996 ACATAGCTGCTACCTGTAAATGTAGA 59.676 38.462 12.26 0.00 37.26 2.59
3828 4360 4.120589 GCTGCTACCTGTAAATGTAGACC 58.879 47.826 0.00 0.00 37.26 3.85
3834 4366 5.818678 ACCTGTAAATGTAGACCAACTGA 57.181 39.130 0.00 0.00 0.00 3.41
3837 4369 4.562082 TGTAAATGTAGACCAACTGACCG 58.438 43.478 0.00 0.00 0.00 4.79
3838 4370 4.281435 TGTAAATGTAGACCAACTGACCGA 59.719 41.667 0.00 0.00 0.00 4.69
4068 4617 1.009903 TCCGCGTCATGGTAAACACG 61.010 55.000 4.92 0.00 35.32 4.49
4074 4623 0.951525 TCATGGTAAACACGCACCGG 60.952 55.000 0.00 0.00 37.66 5.28
4585 5269 2.121538 CCGTCTGATCGCTCCTCCA 61.122 63.158 0.00 0.00 0.00 3.86
4586 5270 1.459455 CCGTCTGATCGCTCCTCCAT 61.459 60.000 0.00 0.00 0.00 3.41
4587 5271 0.039617 CGTCTGATCGCTCCTCCATC 60.040 60.000 0.00 0.00 0.00 3.51
4588 5272 0.039617 GTCTGATCGCTCCTCCATCG 60.040 60.000 0.00 0.00 0.00 3.84
4589 5273 1.175347 TCTGATCGCTCCTCCATCGG 61.175 60.000 0.00 0.00 0.00 4.18
4646 5347 7.894364 AGACAAAACCTCTATTCCTACTCAGTA 59.106 37.037 0.00 0.00 0.00 2.74
4647 5348 8.068892 ACAAAACCTCTATTCCTACTCAGTAG 57.931 38.462 4.66 4.66 36.04 2.57
4649 5350 9.186837 CAAAACCTCTATTCCTACTCAGTAGTA 57.813 37.037 11.06 0.00 37.15 1.82
4650 5351 8.750515 AAACCTCTATTCCTACTCAGTAGTAC 57.249 38.462 11.06 0.00 37.15 2.73
4651 5352 7.448915 ACCTCTATTCCTACTCAGTAGTACA 57.551 40.000 11.06 0.00 37.15 2.90
4652 5353 7.511268 ACCTCTATTCCTACTCAGTAGTACAG 58.489 42.308 11.06 2.97 37.15 2.74
4654 5355 8.649591 CCTCTATTCCTACTCAGTAGTACAGTA 58.350 40.741 11.06 2.04 37.15 2.74
4758 5485 6.970043 GCTGTACTGTTTTGATTTGTACACAA 59.030 34.615 0.00 0.00 38.62 3.33
4812 5545 6.697455 CGCTATATGTGGCATCGATACTTAAT 59.303 38.462 0.00 0.00 0.00 1.40
4818 5551 8.621532 ATGTGGCATCGATACTTAATAAATGT 57.378 30.769 0.00 0.00 0.00 2.71
4819 5552 9.719355 ATGTGGCATCGATACTTAATAAATGTA 57.281 29.630 0.00 0.00 0.00 2.29
4820 5553 8.984764 TGTGGCATCGATACTTAATAAATGTAC 58.015 33.333 0.00 0.00 0.00 2.90
4821 5554 9.204570 GTGGCATCGATACTTAATAAATGTACT 57.795 33.333 0.00 0.00 0.00 2.73
4822 5555 9.772973 TGGCATCGATACTTAATAAATGTACTT 57.227 29.630 0.00 0.00 0.00 2.24
4872 5605 4.384547 TGCATTGATACATATACGACACGC 59.615 41.667 0.00 0.00 0.00 5.34
4908 5641 2.419990 CGGTCCTTGGTGATAATGCAGA 60.420 50.000 0.00 0.00 0.00 4.26
4913 5646 4.019411 TCCTTGGTGATAATGCAGAAGTGA 60.019 41.667 0.00 0.00 0.00 3.41
4917 5650 5.419542 TGGTGATAATGCAGAAGTGAGTAC 58.580 41.667 0.00 0.00 0.00 2.73
4951 8948 9.512588 CCATGATGGAACTATTATCTTTAGCTT 57.487 33.333 5.27 0.00 40.96 3.74
4961 8958 8.968969 ACTATTATCTTTAGCTTCTATACGGGG 58.031 37.037 0.00 0.00 0.00 5.73
5017 9025 2.567615 CCTTGCTAGGGTACTTCACTGT 59.432 50.000 6.27 0.00 37.94 3.55
5018 9026 3.368531 CCTTGCTAGGGTACTTCACTGTC 60.369 52.174 6.27 0.00 37.94 3.51
5057 9065 8.408043 AAACTACCAATTGATGTGAAATCAGA 57.592 30.769 7.12 0.00 0.00 3.27
5059 9067 5.649782 ACCAATTGATGTGAAATCAGACC 57.350 39.130 7.12 0.00 0.00 3.85
5093 9310 5.513788 CGGTTATGATGATCAAAGGAGGGAT 60.514 44.000 0.00 0.00 0.00 3.85
5099 9316 4.778213 TGATCAAAGGAGGGATTGGTAG 57.222 45.455 0.00 0.00 0.00 3.18
5105 9322 2.279173 AGGAGGGATTGGTAGCAAGTT 58.721 47.619 13.51 0.00 0.00 2.66
5158 9375 7.464589 TCATTAGTAGTATGGAGGAGAGGGATA 59.535 40.741 0.00 0.00 0.00 2.59
5192 9409 6.019801 GCTCATACTCGTCGAAATTGTAATGT 60.020 38.462 0.00 0.00 0.00 2.71
5193 9410 7.166970 GCTCATACTCGTCGAAATTGTAATGTA 59.833 37.037 0.00 0.00 0.00 2.29
5219 9436 0.173255 CACGCCCTGGCTAATTTTGG 59.827 55.000 6.60 0.00 39.32 3.28
5221 9438 0.894835 CGCCCTGGCTAATTTTGGTT 59.105 50.000 6.60 0.00 39.32 3.67
5287 9509 7.684529 AGATGAGGTCTTGAAACTTGTAAGAT 58.315 34.615 0.00 0.00 31.47 2.40
5320 9542 9.423061 GTAAAACCTGATTTTGAGTAATGCAAT 57.577 29.630 0.00 0.00 40.80 3.56
5437 9661 8.336801 ACCTATGCACTACTTTTTAGAAAAGG 57.663 34.615 15.27 5.74 0.00 3.11
5438 9662 8.161425 ACCTATGCACTACTTTTTAGAAAAGGA 58.839 33.333 15.27 7.75 0.00 3.36
5439 9663 8.669243 CCTATGCACTACTTTTTAGAAAAGGAG 58.331 37.037 19.02 19.02 42.53 3.69
5440 9664 6.877611 TGCACTACTTTTTAGAAAAGGAGG 57.122 37.500 22.60 15.12 41.44 4.30
5441 9665 6.597562 TGCACTACTTTTTAGAAAAGGAGGA 58.402 36.000 22.60 9.03 41.44 3.71
5442 9666 7.231467 TGCACTACTTTTTAGAAAAGGAGGAT 58.769 34.615 22.60 6.54 41.44 3.24
5443 9667 7.174946 TGCACTACTTTTTAGAAAAGGAGGATG 59.825 37.037 22.60 15.97 41.44 3.51
5444 9668 7.390718 GCACTACTTTTTAGAAAAGGAGGATGA 59.609 37.037 22.60 0.93 41.44 2.92
5445 9669 8.722394 CACTACTTTTTAGAAAAGGAGGATGAC 58.278 37.037 22.60 0.00 41.44 3.06
5446 9670 7.883833 ACTACTTTTTAGAAAAGGAGGATGACC 59.116 37.037 22.60 0.00 41.44 4.02
5447 9671 6.010850 ACTTTTTAGAAAAGGAGGATGACCC 58.989 40.000 15.27 0.00 36.73 4.46
5448 9672 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
5449 9673 0.912486 AGAAAAGGAGGATGACCCCG 59.088 55.000 0.00 0.00 36.73 5.73
5450 9674 0.107165 GAAAAGGAGGATGACCCCGG 60.107 60.000 0.00 0.00 36.73 5.73
5451 9675 2.211468 AAAAGGAGGATGACCCCGGC 62.211 60.000 0.00 0.00 36.73 6.13
5454 9678 3.551407 GAGGATGACCCCGGCCTC 61.551 72.222 7.66 7.66 40.04 4.70
5455 9679 4.095400 AGGATGACCCCGGCCTCT 62.095 66.667 0.00 0.00 36.73 3.69
5456 9680 3.866582 GGATGACCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
5457 9681 4.554036 GATGACCCCGGCCTCTGC 62.554 72.222 0.00 0.00 0.00 4.26
5460 9684 4.554036 GACCCCGGCCTCTGCATC 62.554 72.222 0.00 0.00 40.13 3.91
5462 9686 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
5463 9687 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
5464 9688 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
5465 9689 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
5466 9690 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
5467 9691 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
5468 9692 1.417288 GGCCTCTGCATCTGGGAGAT 61.417 60.000 0.00 0.00 43.58 2.75
5477 9701 2.434428 CATCTGGGAGATGCATAAGGC 58.566 52.381 0.00 0.00 44.69 4.35
5478 9702 0.767375 TCTGGGAGATGCATAAGGCC 59.233 55.000 0.00 0.00 43.89 5.19
5479 9703 0.475475 CTGGGAGATGCATAAGGCCA 59.525 55.000 5.01 0.00 43.89 5.36
5480 9704 0.183492 TGGGAGATGCATAAGGCCAC 59.817 55.000 5.01 0.00 43.89 5.01
5481 9705 0.475906 GGGAGATGCATAAGGCCACT 59.524 55.000 5.01 0.00 43.89 4.00
5482 9706 1.133668 GGGAGATGCATAAGGCCACTT 60.134 52.381 5.01 0.00 43.89 3.16
5483 9707 2.659428 GGAGATGCATAAGGCCACTTT 58.341 47.619 5.01 0.00 43.89 2.66
5484 9708 3.435026 GGGAGATGCATAAGGCCACTTTA 60.435 47.826 5.01 0.00 43.89 1.85
5485 9709 4.401925 GGAGATGCATAAGGCCACTTTAT 58.598 43.478 5.01 0.00 43.89 1.40
5486 9710 4.829492 GGAGATGCATAAGGCCACTTTATT 59.171 41.667 5.01 0.00 43.89 1.40
5487 9711 5.278660 GGAGATGCATAAGGCCACTTTATTG 60.279 44.000 5.01 0.00 43.89 1.90
5488 9712 5.448654 AGATGCATAAGGCCACTTTATTGA 58.551 37.500 5.01 0.00 43.89 2.57
5489 9713 6.073314 AGATGCATAAGGCCACTTTATTGAT 58.927 36.000 5.01 0.00 43.89 2.57
5490 9714 6.552350 AGATGCATAAGGCCACTTTATTGATT 59.448 34.615 5.01 0.00 43.89 2.57
5491 9715 7.725397 AGATGCATAAGGCCACTTTATTGATTA 59.275 33.333 5.01 0.00 43.89 1.75
5492 9716 7.838079 TGCATAAGGCCACTTTATTGATTAT 57.162 32.000 5.01 0.00 43.89 1.28
5493 9717 8.248904 TGCATAAGGCCACTTTATTGATTATT 57.751 30.769 5.01 0.00 43.89 1.40
5494 9718 8.359642 TGCATAAGGCCACTTTATTGATTATTC 58.640 33.333 5.01 0.00 43.89 1.75
5495 9719 8.579863 GCATAAGGCCACTTTATTGATTATTCT 58.420 33.333 5.01 0.00 38.14 2.40
5497 9721 6.867662 AGGCCACTTTATTGATTATTCTCG 57.132 37.500 5.01 0.00 0.00 4.04
5498 9722 6.591935 AGGCCACTTTATTGATTATTCTCGA 58.408 36.000 5.01 0.00 0.00 4.04
5499 9723 6.708054 AGGCCACTTTATTGATTATTCTCGAG 59.292 38.462 5.01 5.93 0.00 4.04
5500 9724 6.073003 GGCCACTTTATTGATTATTCTCGAGG 60.073 42.308 13.56 0.00 0.00 4.63
5501 9725 6.706270 GCCACTTTATTGATTATTCTCGAGGA 59.294 38.462 13.56 3.44 0.00 3.71
5502 9726 7.307455 GCCACTTTATTGATTATTCTCGAGGAC 60.307 40.741 13.56 0.00 0.00 3.85
5503 9727 7.171678 CCACTTTATTGATTATTCTCGAGGACC 59.828 40.741 13.56 0.00 0.00 4.46
5504 9728 7.928706 CACTTTATTGATTATTCTCGAGGACCT 59.071 37.037 13.56 0.00 0.00 3.85
5505 9729 8.487028 ACTTTATTGATTATTCTCGAGGACCTT 58.513 33.333 13.56 0.00 0.00 3.50
5506 9730 9.982651 CTTTATTGATTATTCTCGAGGACCTTA 57.017 33.333 13.56 0.00 0.00 2.69
5511 9735 9.982651 TTGATTATTCTCGAGGACCTTATAAAG 57.017 33.333 13.56 0.00 0.00 1.85
5512 9736 9.144298 TGATTATTCTCGAGGACCTTATAAAGT 57.856 33.333 13.56 0.00 0.00 2.66
5518 9742 8.985315 TCTCGAGGACCTTATAAAGTATTACA 57.015 34.615 13.56 0.00 0.00 2.41
5519 9743 9.412460 TCTCGAGGACCTTATAAAGTATTACAA 57.588 33.333 13.56 0.00 0.00 2.41
5520 9744 9.460906 CTCGAGGACCTTATAAAGTATTACAAC 57.539 37.037 3.91 0.00 0.00 3.32
5521 9745 8.970020 TCGAGGACCTTATAAAGTATTACAACA 58.030 33.333 0.00 0.00 0.00 3.33
5522 9746 9.590451 CGAGGACCTTATAAAGTATTACAACAA 57.410 33.333 0.00 0.00 0.00 2.83
5528 9752 9.730420 CCTTATAAAGTATTACAACAATGTGCC 57.270 33.333 0.00 0.00 40.84 5.01
5531 9755 6.892658 AAAGTATTACAACAATGTGCCTGA 57.107 33.333 0.00 0.00 40.84 3.86
5532 9756 6.892658 AAGTATTACAACAATGTGCCTGAA 57.107 33.333 0.00 0.00 40.84 3.02
5533 9757 7.466746 AAGTATTACAACAATGTGCCTGAAT 57.533 32.000 0.00 0.00 40.84 2.57
5534 9758 7.088589 AGTATTACAACAATGTGCCTGAATC 57.911 36.000 0.00 0.00 40.84 2.52
5535 9759 4.782019 TTACAACAATGTGCCTGAATCC 57.218 40.909 0.00 0.00 40.84 3.01
5536 9760 2.596346 ACAACAATGTGCCTGAATCCA 58.404 42.857 0.00 0.00 38.69 3.41
5537 9761 2.297033 ACAACAATGTGCCTGAATCCAC 59.703 45.455 0.00 0.00 38.69 4.02
5538 9762 1.549203 ACAATGTGCCTGAATCCACC 58.451 50.000 0.00 0.00 0.00 4.61
5539 9763 1.203038 ACAATGTGCCTGAATCCACCA 60.203 47.619 0.00 0.00 0.00 4.17
5540 9764 2.104967 CAATGTGCCTGAATCCACCAT 58.895 47.619 0.00 0.00 0.00 3.55
5541 9765 2.062971 ATGTGCCTGAATCCACCATC 57.937 50.000 0.00 0.00 0.00 3.51
5542 9766 0.034186 TGTGCCTGAATCCACCATCC 60.034 55.000 0.00 0.00 0.00 3.51
5543 9767 0.034186 GTGCCTGAATCCACCATCCA 60.034 55.000 0.00 0.00 0.00 3.41
5544 9768 0.703488 TGCCTGAATCCACCATCCAA 59.297 50.000 0.00 0.00 0.00 3.53
5545 9769 1.076841 TGCCTGAATCCACCATCCAAA 59.923 47.619 0.00 0.00 0.00 3.28
5546 9770 2.178580 GCCTGAATCCACCATCCAAAA 58.821 47.619 0.00 0.00 0.00 2.44
5547 9771 2.767960 GCCTGAATCCACCATCCAAAAT 59.232 45.455 0.00 0.00 0.00 1.82
5548 9772 3.431207 GCCTGAATCCACCATCCAAAATG 60.431 47.826 0.00 0.00 0.00 2.32
5549 9773 4.025360 CCTGAATCCACCATCCAAAATGA 58.975 43.478 0.00 0.00 0.00 2.57
5550 9774 4.652421 CCTGAATCCACCATCCAAAATGAT 59.348 41.667 0.00 0.00 0.00 2.45
5551 9775 5.452776 CCTGAATCCACCATCCAAAATGATG 60.453 44.000 0.00 0.00 41.47 3.07
5552 9776 5.270794 TGAATCCACCATCCAAAATGATGA 58.729 37.500 2.70 0.00 43.94 2.92
5553 9777 5.720520 TGAATCCACCATCCAAAATGATGAA 59.279 36.000 2.70 0.00 43.94 2.57
5554 9778 5.864418 ATCCACCATCCAAAATGATGAAG 57.136 39.130 2.70 0.00 43.94 3.02
5555 9779 4.025360 TCCACCATCCAAAATGATGAAGG 58.975 43.478 2.70 4.50 43.94 3.46
5556 9780 3.133362 CCACCATCCAAAATGATGAAGGG 59.867 47.826 2.70 0.00 43.94 3.95
5557 9781 3.133362 CACCATCCAAAATGATGAAGGGG 59.867 47.826 2.70 0.00 43.94 4.79
5558 9782 3.246094 ACCATCCAAAATGATGAAGGGGT 60.246 43.478 2.70 0.00 43.94 4.95
5559 9783 3.133362 CCATCCAAAATGATGAAGGGGTG 59.867 47.826 2.70 0.00 43.94 4.61
5560 9784 2.178580 TCCAAAATGATGAAGGGGTGC 58.821 47.619 0.00 0.00 0.00 5.01
5561 9785 2.181975 CCAAAATGATGAAGGGGTGCT 58.818 47.619 0.00 0.00 0.00 4.40
5562 9786 3.011144 TCCAAAATGATGAAGGGGTGCTA 59.989 43.478 0.00 0.00 0.00 3.49
5563 9787 3.382546 CCAAAATGATGAAGGGGTGCTAG 59.617 47.826 0.00 0.00 0.00 3.42
5564 9788 2.355010 AATGATGAAGGGGTGCTAGC 57.645 50.000 8.10 8.10 0.00 3.42
5565 9789 1.516110 ATGATGAAGGGGTGCTAGCT 58.484 50.000 17.23 0.00 0.00 3.32
5566 9790 0.543277 TGATGAAGGGGTGCTAGCTG 59.457 55.000 17.23 0.00 0.00 4.24
5567 9791 0.179034 GATGAAGGGGTGCTAGCTGG 60.179 60.000 17.23 0.00 0.00 4.85
5568 9792 1.639635 ATGAAGGGGTGCTAGCTGGG 61.640 60.000 17.23 0.00 0.00 4.45
5569 9793 3.705934 GAAGGGGTGCTAGCTGGGC 62.706 68.421 17.23 0.81 0.00 5.36
5572 9796 4.803908 GGGTGCTAGCTGGGCCAC 62.804 72.222 17.23 4.06 0.00 5.01
5573 9797 3.721706 GGTGCTAGCTGGGCCACT 61.722 66.667 17.23 8.06 0.00 4.00
5574 9798 2.367202 GGTGCTAGCTGGGCCACTA 61.367 63.158 17.23 8.85 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 4.659172 TGGTTGGCCTCGCAAGGG 62.659 66.667 3.32 0.00 43.58 3.95
202 234 2.184830 CGCATACGACCGAGGGAGA 61.185 63.158 0.00 0.00 43.93 3.71
207 239 2.954868 GGCACGCATACGACCGAG 60.955 66.667 0.00 0.00 43.93 4.63
290 322 0.819582 CCAGTCCATGCATGTTTCCC 59.180 55.000 24.58 7.87 0.00 3.97
292 324 2.416431 GCTTCCAGTCCATGCATGTTTC 60.416 50.000 24.58 13.99 0.00 2.78
324 357 2.187946 CTAGGAGCCAAGCCACCG 59.812 66.667 0.00 0.00 32.55 4.94
379 419 2.666862 TGATGCGTTCGCCGGTTT 60.667 55.556 14.44 0.00 36.94 3.27
411 451 4.430423 GACGCGCGCAGGTTTCAG 62.430 66.667 32.58 14.51 0.00 3.02
475 515 1.303643 CACCTGGAAGTCAAGCCCC 60.304 63.158 0.00 0.00 0.00 5.80
549 589 2.459934 CGAGACATGCGTATGCTAACA 58.540 47.619 13.82 0.00 43.34 2.41
575 617 1.472026 CCCGGACGGATAAATGTTCGT 60.472 52.381 13.13 0.00 35.31 3.85
593 635 1.182667 CCGGAAATCAAAAGGGACCC 58.817 55.000 0.59 0.59 0.00 4.46
594 636 0.530744 GCCGGAAATCAAAAGGGACC 59.469 55.000 5.05 0.00 0.00 4.46
646 693 0.460987 CCATCTCTCCAACCAGACGC 60.461 60.000 0.00 0.00 0.00 5.19
674 721 3.228759 ACCACAGTGCGTACCGGT 61.229 61.111 13.98 13.98 0.00 5.28
770 849 7.823665 TCGTCCGCATGTTTATATACTAGAAT 58.176 34.615 0.00 0.00 0.00 2.40
773 852 6.028368 CCTCGTCCGCATGTTTATATACTAG 58.972 44.000 0.00 0.00 0.00 2.57
774 853 5.620654 GCCTCGTCCGCATGTTTATATACTA 60.621 44.000 0.00 0.00 0.00 1.82
775 854 4.806330 CCTCGTCCGCATGTTTATATACT 58.194 43.478 0.00 0.00 0.00 2.12
895 983 3.386237 GAGCCGGCAGTGGAGACT 61.386 66.667 31.54 3.33 0.00 3.24
896 984 4.459089 GGAGCCGGCAGTGGAGAC 62.459 72.222 31.54 8.62 0.00 3.36
897 985 4.704103 AGGAGCCGGCAGTGGAGA 62.704 66.667 31.54 0.00 0.00 3.71
902 990 3.077556 ATTCGAGGAGCCGGCAGT 61.078 61.111 31.54 12.75 0.00 4.40
917 1005 2.025155 ACTGTCGCACTATCTCCGATT 58.975 47.619 0.00 0.00 33.24 3.34
921 1009 1.001158 GGCTACTGTCGCACTATCTCC 60.001 57.143 6.64 0.00 0.00 3.71
925 1013 0.747255 CTGGGCTACTGTCGCACTAT 59.253 55.000 8.09 0.00 0.00 2.12
927 1015 2.973899 CTGGGCTACTGTCGCACT 59.026 61.111 8.09 0.00 0.00 4.40
929 1017 2.997315 AGCTGGGCTACTGTCGCA 60.997 61.111 6.64 0.00 36.99 5.10
932 1020 0.382515 CGTAGAGCTGGGCTACTGTC 59.617 60.000 8.85 0.00 39.88 3.51
953 1041 0.251653 TTCGTCCCCTCTAGCAGTGT 60.252 55.000 0.00 0.00 0.00 3.55
1020 1141 0.535102 GGTTATCCCACGGCCATGAG 60.535 60.000 0.00 0.00 0.00 2.90
1068 1189 1.507713 CATCGTCAGCGCAAACACG 60.508 57.895 11.47 12.12 38.14 4.49
1090 1211 4.164822 ACATACTGCATGACAAGCAAAC 57.835 40.909 6.82 0.00 42.17 2.93
1106 1227 5.220529 GGCCACGTCAGTAACATTTACATAC 60.221 44.000 0.00 0.00 0.00 2.39
1113 1241 2.083774 CATGGCCACGTCAGTAACATT 58.916 47.619 8.16 0.00 0.00 2.71
1405 1551 3.055891 AGTCGCATATATAGGCATGCACA 60.056 43.478 21.36 6.46 46.32 4.57
1427 1573 3.753272 GAGCTGGATTTGTTAGCACTTCA 59.247 43.478 0.00 0.00 39.84 3.02
1454 1600 2.631428 CTGGAAACACACACGGCG 59.369 61.111 4.80 4.80 35.60 6.46
1455 1601 2.551912 CCCTGGAAACACACACGGC 61.552 63.158 0.00 0.00 35.60 5.68
1722 1879 4.590918 TCAACCCAGACAACACAAAGTAA 58.409 39.130 0.00 0.00 0.00 2.24
1752 1917 5.410924 TGTGTTGAGAACTTAGGATCGATG 58.589 41.667 0.54 0.00 0.00 3.84
2037 2207 3.118629 AGTGACTATGCCTATGTGTGTGG 60.119 47.826 0.00 0.00 0.00 4.17
2057 2227 3.451540 GGAAGAAGGGAAATACGAGGAGT 59.548 47.826 0.00 0.00 0.00 3.85
2060 2230 2.167900 ACGGAAGAAGGGAAATACGAGG 59.832 50.000 0.00 0.00 0.00 4.63
2061 2231 3.521947 ACGGAAGAAGGGAAATACGAG 57.478 47.619 0.00 0.00 0.00 4.18
2063 2233 2.601763 CGAACGGAAGAAGGGAAATACG 59.398 50.000 0.00 0.00 0.00 3.06
2075 2252 1.578583 AAGTTGTGACCGAACGGAAG 58.421 50.000 20.14 0.00 38.96 3.46
2076 2253 2.865551 GTTAAGTTGTGACCGAACGGAA 59.134 45.455 20.14 4.88 38.96 4.30
2077 2254 2.472816 GTTAAGTTGTGACCGAACGGA 58.527 47.619 20.14 0.00 38.96 4.69
2078 2255 1.528161 GGTTAAGTTGTGACCGAACGG 59.472 52.381 11.83 11.83 42.03 4.44
2110 2287 9.185680 ACACTAGTGTTTCTTGGATAAGTTTTT 57.814 29.630 22.95 0.00 41.83 1.94
2243 2420 5.642063 GCCAAAGTACACGCACCATATATAT 59.358 40.000 0.00 0.00 0.00 0.86
2244 2421 4.992319 GCCAAAGTACACGCACCATATATA 59.008 41.667 0.00 0.00 0.00 0.86
2245 2422 3.813166 GCCAAAGTACACGCACCATATAT 59.187 43.478 0.00 0.00 0.00 0.86
2246 2423 3.199677 GCCAAAGTACACGCACCATATA 58.800 45.455 0.00 0.00 0.00 0.86
2275 2452 2.288518 GGCTGTAGCTGTACTATCTGGC 60.289 54.545 0.00 0.00 41.70 4.85
2495 2972 1.377202 CTTCCCGGTGTGGTGGATG 60.377 63.158 0.00 0.00 35.15 3.51
2571 3048 3.465403 CAGCTCCCAGGACTCGGG 61.465 72.222 0.00 0.00 46.03 5.14
2574 3051 1.958902 CTCTGCAGCTCCCAGGACTC 61.959 65.000 9.47 0.00 0.00 3.36
2575 3052 1.988956 CTCTGCAGCTCCCAGGACT 60.989 63.158 9.47 0.00 0.00 3.85
2576 3053 2.583520 CTCTGCAGCTCCCAGGAC 59.416 66.667 9.47 0.00 0.00 3.85
2621 3102 1.965643 ACCGTGGTGCTACTCAAGTTA 59.034 47.619 0.00 0.00 0.00 2.24
2645 3129 2.012051 GCATACGCAACCTGGCTACTT 61.012 52.381 0.00 0.00 38.36 2.24
2720 3207 3.357079 CACTGCACTGGGTTCGGC 61.357 66.667 0.00 0.00 0.00 5.54
2721 3208 0.250124 TAACACTGCACTGGGTTCGG 60.250 55.000 0.00 0.00 0.00 4.30
2722 3209 1.148310 CTAACACTGCACTGGGTTCG 58.852 55.000 0.00 0.00 0.00 3.95
2723 3210 2.143925 GTCTAACACTGCACTGGGTTC 58.856 52.381 0.00 0.00 0.00 3.62
2724 3211 1.768870 AGTCTAACACTGCACTGGGTT 59.231 47.619 0.00 0.00 32.26 4.11
2725 3212 1.344763 GAGTCTAACACTGCACTGGGT 59.655 52.381 0.00 0.00 34.41 4.51
2726 3213 1.670087 CGAGTCTAACACTGCACTGGG 60.670 57.143 0.00 0.00 34.41 4.45
2727 3214 1.670087 CCGAGTCTAACACTGCACTGG 60.670 57.143 0.00 0.00 34.41 4.00
2728 3215 1.269723 TCCGAGTCTAACACTGCACTG 59.730 52.381 0.00 0.00 34.41 3.66
2774 3261 4.662961 TCTGCGTGTGGAGCACCG 62.663 66.667 0.00 0.00 44.97 4.94
2793 3280 7.650104 CGTCTAGTTTTGAGAAGAAGAAGAAGT 59.350 37.037 0.00 0.00 0.00 3.01
2799 3286 5.009710 TCTGCGTCTAGTTTTGAGAAGAAGA 59.990 40.000 0.00 0.00 35.47 2.87
2800 3287 5.223382 TCTGCGTCTAGTTTTGAGAAGAAG 58.777 41.667 0.00 0.00 31.31 2.85
2801 3288 5.196341 TCTGCGTCTAGTTTTGAGAAGAA 57.804 39.130 0.00 0.00 0.00 2.52
2804 3291 3.741344 GCTTCTGCGTCTAGTTTTGAGAA 59.259 43.478 0.00 0.00 0.00 2.87
2806 3293 3.321497 AGCTTCTGCGTCTAGTTTTGAG 58.679 45.455 0.00 0.00 45.42 3.02
2807 3294 3.386768 AGCTTCTGCGTCTAGTTTTGA 57.613 42.857 0.00 0.00 45.42 2.69
2808 3295 4.059008 GAAGCTTCTGCGTCTAGTTTTG 57.941 45.455 19.44 0.00 42.85 2.44
2820 3307 2.957491 ACGATCAGGAGAAGCTTCTG 57.043 50.000 33.07 19.49 38.39 3.02
2822 3309 2.427453 TGGTACGATCAGGAGAAGCTTC 59.573 50.000 19.11 19.11 0.00 3.86
2823 3310 2.166664 GTGGTACGATCAGGAGAAGCTT 59.833 50.000 0.00 0.00 0.00 3.74
2824 3311 1.751924 GTGGTACGATCAGGAGAAGCT 59.248 52.381 0.00 0.00 0.00 3.74
2825 3312 1.751924 AGTGGTACGATCAGGAGAAGC 59.248 52.381 0.00 0.00 0.00 3.86
2826 3313 4.200874 ACTAGTGGTACGATCAGGAGAAG 58.799 47.826 0.00 0.00 0.00 2.85
2829 3316 4.706035 ACTACTAGTGGTACGATCAGGAG 58.294 47.826 10.57 0.00 0.00 3.69
2830 3317 4.767578 ACTACTAGTGGTACGATCAGGA 57.232 45.455 10.57 0.00 0.00 3.86
2831 3318 4.025061 CGAACTACTAGTGGTACGATCAGG 60.025 50.000 12.76 0.00 0.00 3.86
2832 3319 4.807834 TCGAACTACTAGTGGTACGATCAG 59.192 45.833 12.76 3.93 0.00 2.90
2833 3320 4.758688 TCGAACTACTAGTGGTACGATCA 58.241 43.478 12.76 0.00 0.00 2.92
2834 3321 5.388268 CGATCGAACTACTAGTGGTACGATC 60.388 48.000 27.27 27.27 45.83 3.69
2835 3322 4.447054 CGATCGAACTACTAGTGGTACGAT 59.553 45.833 12.76 17.82 40.87 3.73
2836 3323 3.798878 CGATCGAACTACTAGTGGTACGA 59.201 47.826 12.76 14.27 0.00 3.43
2837 3324 3.798878 TCGATCGAACTACTAGTGGTACG 59.201 47.826 16.99 12.63 0.00 3.67
2838 3325 5.107143 GGATCGATCGAACTACTAGTGGTAC 60.107 48.000 23.50 0.00 0.00 3.34
2839 3326 4.993584 GGATCGATCGAACTACTAGTGGTA 59.006 45.833 23.50 0.00 0.00 3.25
2840 3327 3.814283 GGATCGATCGAACTACTAGTGGT 59.186 47.826 23.50 5.98 0.00 4.16
2841 3328 3.120615 CGGATCGATCGAACTACTAGTGG 60.121 52.174 23.50 4.89 0.00 4.00
2842 3329 3.493877 ACGGATCGATCGAACTACTAGTG 59.506 47.826 23.50 7.09 0.00 2.74
2843 3330 3.726607 ACGGATCGATCGAACTACTAGT 58.273 45.455 23.50 12.08 0.00 2.57
2844 3331 3.989167 AGACGGATCGATCGAACTACTAG 59.011 47.826 23.50 11.47 0.00 2.57
2845 3332 3.739810 CAGACGGATCGATCGAACTACTA 59.260 47.826 23.50 0.00 0.00 1.82
2846 3333 2.544686 CAGACGGATCGATCGAACTACT 59.455 50.000 23.50 15.68 0.00 2.57
2847 3334 2.287373 ACAGACGGATCGATCGAACTAC 59.713 50.000 23.50 13.22 0.00 2.73
2848 3335 2.287103 CACAGACGGATCGATCGAACTA 59.713 50.000 23.50 0.00 0.00 2.24
2849 3336 1.064208 CACAGACGGATCGATCGAACT 59.936 52.381 23.50 6.38 0.00 3.01
2850 3337 1.202154 ACACAGACGGATCGATCGAAC 60.202 52.381 23.50 19.61 0.00 3.95
2851 3338 1.092348 ACACAGACGGATCGATCGAA 58.908 50.000 23.50 5.77 0.00 3.71
2852 3339 1.865340 CTACACAGACGGATCGATCGA 59.135 52.381 21.86 21.86 0.00 3.59
2853 3340 1.598132 ACTACACAGACGGATCGATCG 59.402 52.381 18.81 9.36 0.00 3.69
2854 3341 3.364062 CAACTACACAGACGGATCGATC 58.636 50.000 17.36 17.36 0.00 3.69
2855 3342 2.479730 GCAACTACACAGACGGATCGAT 60.480 50.000 0.00 0.00 0.00 3.59
2856 3343 1.135489 GCAACTACACAGACGGATCGA 60.135 52.381 0.00 0.00 0.00 3.59
2857 3344 1.269166 GCAACTACACAGACGGATCG 58.731 55.000 0.00 0.00 0.00 3.69
2992 3479 3.503748 AGTACGTACTATTACCGATGGCC 59.496 47.826 26.36 0.00 34.13 5.36
3005 3492 1.830279 TGCCAGCAGTAGTACGTACT 58.170 50.000 29.62 29.62 43.31 2.73
3006 3493 2.098607 TGATGCCAGCAGTAGTACGTAC 59.901 50.000 18.10 18.10 0.00 3.67
3009 3496 2.515926 ATGATGCCAGCAGTAGTACG 57.484 50.000 0.00 0.00 0.00 3.67
3010 3497 4.191544 TCAAATGATGCCAGCAGTAGTAC 58.808 43.478 0.00 0.00 0.00 2.73
3011 3498 4.486125 TCAAATGATGCCAGCAGTAGTA 57.514 40.909 0.00 0.00 0.00 1.82
3012 3499 3.354948 TCAAATGATGCCAGCAGTAGT 57.645 42.857 0.00 0.00 0.00 2.73
3013 3500 3.488721 GCTTCAAATGATGCCAGCAGTAG 60.489 47.826 9.47 0.00 38.73 2.57
3014 3501 2.424601 GCTTCAAATGATGCCAGCAGTA 59.575 45.455 9.47 0.00 38.73 2.74
3015 3502 1.203994 GCTTCAAATGATGCCAGCAGT 59.796 47.619 9.47 0.00 38.73 4.40
3017 3504 0.171679 CGCTTCAAATGATGCCAGCA 59.828 50.000 13.64 0.00 40.75 4.41
3018 3505 1.143969 GCGCTTCAAATGATGCCAGC 61.144 55.000 13.64 9.51 40.75 4.85
3019 3506 0.526954 GGCGCTTCAAATGATGCCAG 60.527 55.000 7.64 4.44 40.75 4.85
3020 3507 1.512230 GGCGCTTCAAATGATGCCA 59.488 52.632 7.64 0.00 40.75 4.92
3021 3508 1.227060 GGGCGCTTCAAATGATGCC 60.227 57.895 7.64 12.43 40.75 4.40
3022 3509 1.227060 GGGGCGCTTCAAATGATGC 60.227 57.895 7.64 10.35 40.53 3.91
3023 3510 0.748450 ATGGGGCGCTTCAAATGATG 59.252 50.000 7.64 0.00 0.00 3.07
3024 3511 1.488390 AATGGGGCGCTTCAAATGAT 58.512 45.000 7.64 0.00 0.00 2.45
3025 3512 2.023673 CTAATGGGGCGCTTCAAATGA 58.976 47.619 7.64 0.00 0.00 2.57
3026 3513 1.067516 CCTAATGGGGCGCTTCAAATG 59.932 52.381 7.64 0.96 0.00 2.32
3027 3514 1.402787 CCTAATGGGGCGCTTCAAAT 58.597 50.000 7.64 2.73 0.00 2.32
3028 3515 2.880770 CCTAATGGGGCGCTTCAAA 58.119 52.632 7.64 0.00 0.00 2.69
3078 3577 1.937278 TCAGCCTAGAGTACGACGAG 58.063 55.000 0.00 0.00 0.00 4.18
3124 3623 4.660105 GCTGTAGTGTAGTGTAGTGTAGC 58.340 47.826 0.00 0.00 0.00 3.58
3135 3634 1.202200 GCTGACTCCGCTGTAGTGTAG 60.202 57.143 0.00 0.00 0.00 2.74
3136 3635 0.809385 GCTGACTCCGCTGTAGTGTA 59.191 55.000 0.00 0.00 0.00 2.90
3138 3637 1.515088 CGCTGACTCCGCTGTAGTG 60.515 63.158 0.00 0.00 0.00 2.74
3140 3639 0.101399 AATCGCTGACTCCGCTGTAG 59.899 55.000 0.00 0.00 0.00 2.74
3222 3726 6.368791 GCGGATACATGCAGTTAATTGATAGA 59.631 38.462 1.56 0.00 0.00 1.98
3223 3727 6.369890 AGCGGATACATGCAGTTAATTGATAG 59.630 38.462 1.56 0.00 0.00 2.08
3228 3732 4.035558 CACAGCGGATACATGCAGTTAATT 59.964 41.667 0.00 0.00 0.00 1.40
3249 3770 3.678289 ACCCGGGTAGTAACAAATTCAC 58.322 45.455 29.13 0.00 0.00 3.18
3271 3792 0.105964 TTCCTTCGTGTCACCCAGTG 59.894 55.000 0.00 0.00 34.45 3.66
3272 3793 0.106149 GTTCCTTCGTGTCACCCAGT 59.894 55.000 0.00 0.00 0.00 4.00
3273 3794 0.944311 CGTTCCTTCGTGTCACCCAG 60.944 60.000 0.00 0.00 0.00 4.45
3562 4093 9.850628 GTAATCAGAAACATGTAGTGTACAGTA 57.149 33.333 6.31 6.31 42.77 2.74
3589 4120 7.878127 AGCAAAACATTCTGAAGCTAGTAAGTA 59.122 33.333 0.00 0.00 0.00 2.24
3593 4124 7.834068 CTAGCAAAACATTCTGAAGCTAGTA 57.166 36.000 18.53 0.00 42.93 1.82
3632 4164 3.244814 GCATGATAACGCAGAGACAAGAG 59.755 47.826 0.00 0.00 0.00 2.85
3722 4254 0.721718 CGACTTTGACGCCCATTCTC 59.278 55.000 0.00 0.00 0.00 2.87
3791 4323 2.772739 CAGCTATGTCAGGTGCACC 58.227 57.895 29.22 29.22 45.21 5.01
3800 4332 5.360591 ACATTTACAGGTAGCAGCTATGTC 58.639 41.667 11.28 2.80 0.00 3.06
3803 4335 6.239345 GGTCTACATTTACAGGTAGCAGCTAT 60.239 42.308 5.14 0.00 37.49 2.97
3823 4355 1.254026 CCACTCGGTCAGTTGGTCTA 58.746 55.000 0.00 0.00 30.26 2.59
3824 4356 0.759436 ACCACTCGGTCAGTTGGTCT 60.759 55.000 0.00 0.00 44.71 3.85
3826 4358 1.046472 TCACCACTCGGTCAGTTGGT 61.046 55.000 0.00 0.00 44.71 3.67
3828 4360 1.270305 ACATCACCACTCGGTCAGTTG 60.270 52.381 0.00 0.00 44.71 3.16
3837 4369 0.792640 CGTTCTGCACATCACCACTC 59.207 55.000 0.00 0.00 0.00 3.51
3838 4370 0.392706 TCGTTCTGCACATCACCACT 59.607 50.000 0.00 0.00 0.00 4.00
4463 5147 1.581954 CTCGAGGAAGTGCACGACT 59.418 57.895 12.01 10.91 35.94 4.18
4585 5269 1.251527 CCATAGCTAGACGGGCCGAT 61.252 60.000 35.78 22.65 0.00 4.18
4586 5270 1.901948 CCATAGCTAGACGGGCCGA 60.902 63.158 35.78 9.74 0.00 5.54
4587 5271 2.651361 CCATAGCTAGACGGGCCG 59.349 66.667 27.06 27.06 0.00 6.13
4588 5272 2.344129 GCCATAGCTAGACGGGCC 59.656 66.667 14.36 0.00 38.70 5.80
4589 5273 2.344129 GGCCATAGCTAGACGGGC 59.656 66.667 16.13 16.13 43.86 6.13
4647 5348 9.074443 CGAGAAGGAAAAAGAATAGTACTGTAC 57.926 37.037 9.93 9.93 0.00 2.90
4649 5350 7.813627 GTCGAGAAGGAAAAAGAATAGTACTGT 59.186 37.037 5.39 0.00 0.00 3.55
4650 5351 7.008447 CGTCGAGAAGGAAAAAGAATAGTACTG 59.992 40.741 5.39 0.00 0.00 2.74
4651 5352 7.028361 CGTCGAGAAGGAAAAAGAATAGTACT 58.972 38.462 0.00 0.00 0.00 2.73
4652 5353 6.805760 ACGTCGAGAAGGAAAAAGAATAGTAC 59.194 38.462 0.00 0.00 0.00 2.73
4654 5355 5.780984 ACGTCGAGAAGGAAAAAGAATAGT 58.219 37.500 0.00 0.00 0.00 2.12
4784 5517 1.886542 TCGATGCCACATATAGCGTCT 59.113 47.619 10.39 0.00 41.82 4.18
4827 5560 8.939201 TGCAAGTACATTTCTGATTTCAAAAA 57.061 26.923 0.00 0.00 0.00 1.94
4828 5561 9.545105 AATGCAAGTACATTTCTGATTTCAAAA 57.455 25.926 0.00 0.00 36.91 2.44
4829 5562 8.980610 CAATGCAAGTACATTTCTGATTTCAAA 58.019 29.630 0.00 0.00 38.19 2.69
4830 5563 8.358895 TCAATGCAAGTACATTTCTGATTTCAA 58.641 29.630 0.00 0.00 38.19 2.69
4831 5564 7.884257 TCAATGCAAGTACATTTCTGATTTCA 58.116 30.769 0.00 0.00 38.19 2.69
4832 5565 8.922058 ATCAATGCAAGTACATTTCTGATTTC 57.078 30.769 0.00 0.00 38.19 2.17
4833 5566 9.793252 GTATCAATGCAAGTACATTTCTGATTT 57.207 29.630 0.00 0.00 38.19 2.17
4834 5567 8.959548 TGTATCAATGCAAGTACATTTCTGATT 58.040 29.630 0.00 0.00 38.19 2.57
4835 5568 8.510243 TGTATCAATGCAAGTACATTTCTGAT 57.490 30.769 0.00 0.00 38.19 2.90
4836 5569 7.920160 TGTATCAATGCAAGTACATTTCTGA 57.080 32.000 0.00 0.00 38.19 3.27
4841 5574 9.705290 TCGTATATGTATCAATGCAAGTACATT 57.295 29.630 16.51 10.28 40.90 2.71
4842 5575 9.140286 GTCGTATATGTATCAATGCAAGTACAT 57.860 33.333 15.93 15.93 40.03 2.29
4843 5576 8.138712 TGTCGTATATGTATCAATGCAAGTACA 58.861 33.333 0.00 0.00 0.00 2.90
4872 5605 0.179134 GACCGAACACAGATCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
4873 5606 0.175989 GGACCGAACACAGATCTCCC 59.824 60.000 0.00 0.00 0.00 4.30
4908 5641 0.895100 TGGCCGTACCGTACTCACTT 60.895 55.000 7.10 0.00 43.94 3.16
4913 5646 0.387929 CATCATGGCCGTACCGTACT 59.612 55.000 0.00 0.00 43.94 2.73
4917 5650 1.145156 TTCCATCATGGCCGTACCG 59.855 57.895 0.00 0.00 43.94 4.02
4923 5656 7.148171 GCTAAAGATAATAGTTCCATCATGGCC 60.148 40.741 0.00 0.00 37.47 5.36
4924 5657 7.609532 AGCTAAAGATAATAGTTCCATCATGGC 59.390 37.037 0.00 0.00 37.47 4.40
4925 5658 9.512588 AAGCTAAAGATAATAGTTCCATCATGG 57.487 33.333 0.00 0.00 39.43 3.66
4935 8932 8.968969 CCCCGTATAGAAGCTAAAGATAATAGT 58.031 37.037 0.00 0.00 0.00 2.12
4951 8948 3.964688 TGAGAAAAGATGCCCCGTATAGA 59.035 43.478 0.00 0.00 0.00 1.98
4954 8951 3.480470 CATGAGAAAAGATGCCCCGTAT 58.520 45.455 0.00 0.00 0.00 3.06
4955 8952 2.917933 CATGAGAAAAGATGCCCCGTA 58.082 47.619 0.00 0.00 0.00 4.02
4957 8954 0.383231 GCATGAGAAAAGATGCCCCG 59.617 55.000 0.00 0.00 39.29 5.73
4958 8955 1.477553 TGCATGAGAAAAGATGCCCC 58.522 50.000 0.00 0.00 43.68 5.80
4959 8956 3.131577 TCATTGCATGAGAAAAGATGCCC 59.868 43.478 0.00 0.00 43.68 5.36
4960 8957 4.380841 TCATTGCATGAGAAAAGATGCC 57.619 40.909 0.00 0.00 43.68 4.40
4961 8958 6.040247 TCAATCATTGCATGAGAAAAGATGC 58.960 36.000 0.00 0.00 43.53 3.91
4985 8986 2.100605 CTAGCAAGGAGTTCGGCTTT 57.899 50.000 0.00 0.00 37.79 3.51
5017 9025 6.921486 TGGTAGTTTACTCCATTGTAGTGA 57.079 37.500 0.00 0.00 0.00 3.41
5018 9026 8.450964 CAATTGGTAGTTTACTCCATTGTAGTG 58.549 37.037 0.00 0.00 0.00 2.74
5059 9067 1.330521 CATCATAACCGCCTCCAAACG 59.669 52.381 0.00 0.00 0.00 3.60
5073 9290 5.373555 ACCAATCCCTCCTTTGATCATCATA 59.626 40.000 0.00 0.00 0.00 2.15
5093 9310 7.938140 AAAGCATATTCTAACTTGCTACCAA 57.062 32.000 0.00 0.00 44.26 3.67
5126 9343 8.674173 TCTCCTCCATACTACTAATGATCTCTT 58.326 37.037 0.00 0.00 0.00 2.85
5158 9375 2.932614 GACGAGTATGAGCAATGCAAGT 59.067 45.455 8.35 0.00 0.00 3.16
5192 9409 1.895238 GCCAGGGCGTGACTAACTA 59.105 57.895 9.09 0.00 0.00 2.24
5193 9410 2.663196 GCCAGGGCGTGACTAACT 59.337 61.111 9.09 0.00 0.00 2.24
5219 9436 0.459411 AGTTTGGCGTTGCAACCAAC 60.459 50.000 23.42 18.77 45.42 3.77
5221 9438 1.000827 CATAGTTTGGCGTTGCAACCA 60.001 47.619 23.42 14.16 0.00 3.67
5246 9468 5.075205 ACCTCATCTAGACCAGAGCCTAATA 59.925 44.000 11.37 0.00 36.48 0.98
5287 9509 8.463930 ACTCAAAATCAGGTTTTACAATCTCA 57.536 30.769 0.00 0.00 37.93 3.27
5367 9591 6.702449 ATACCCAAACATATATGAGAGCCA 57.298 37.500 19.63 0.00 0.00 4.75
5395 9619 7.661437 GTGCATAGGTATATGATTTCTGTCCAA 59.339 37.037 0.00 0.00 41.22 3.53
5412 9636 8.161425 TCCTTTTCTAAAAAGTAGTGCATAGGT 58.839 33.333 10.36 0.00 0.00 3.08
5417 9641 6.597562 TCCTCCTTTTCTAAAAAGTAGTGCA 58.402 36.000 10.36 0.00 0.00 4.57
5427 9651 3.054655 CGGGGTCATCCTCCTTTTCTAAA 60.055 47.826 0.00 0.00 35.33 1.85
5431 9655 0.107165 CCGGGGTCATCCTCCTTTTC 60.107 60.000 0.00 0.00 35.33 2.29
5432 9656 1.999346 CCGGGGTCATCCTCCTTTT 59.001 57.895 0.00 0.00 35.33 2.27
5437 9661 3.551407 GAGGCCGGGGTCATCCTC 61.551 72.222 2.18 5.59 38.40 3.71
5438 9662 4.095400 AGAGGCCGGGGTCATCCT 62.095 66.667 2.18 0.00 35.33 3.24
5439 9663 3.866582 CAGAGGCCGGGGTCATCC 61.867 72.222 2.18 0.00 0.00 3.51
5440 9664 4.554036 GCAGAGGCCGGGGTCATC 62.554 72.222 2.18 0.00 0.00 2.92
5443 9667 4.554036 GATGCAGAGGCCGGGGTC 62.554 72.222 2.18 0.00 40.13 4.46
5445 9669 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
5446 9670 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
5447 9671 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
5448 9672 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
5449 9673 1.417288 ATCTCCCAGATGCAGAGGCC 61.417 60.000 0.00 0.00 40.13 5.19
5450 9674 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.000 0.61 0.00 44.69 4.70
5458 9682 1.353694 GGCCTTATGCATCTCCCAGAT 59.646 52.381 0.19 0.00 43.89 2.90
5459 9683 0.767375 GGCCTTATGCATCTCCCAGA 59.233 55.000 0.19 0.00 43.89 3.86
5460 9684 0.475475 TGGCCTTATGCATCTCCCAG 59.525 55.000 0.19 0.00 43.89 4.45
5461 9685 0.183492 GTGGCCTTATGCATCTCCCA 59.817 55.000 0.19 3.16 43.89 4.37
5462 9686 0.475906 AGTGGCCTTATGCATCTCCC 59.524 55.000 0.19 0.17 43.89 4.30
5463 9687 2.355010 AAGTGGCCTTATGCATCTCC 57.645 50.000 0.19 0.71 43.89 3.71
5464 9688 5.532406 TCAATAAAGTGGCCTTATGCATCTC 59.468 40.000 0.19 0.00 43.89 2.75
5465 9689 5.448654 TCAATAAAGTGGCCTTATGCATCT 58.551 37.500 0.19 0.00 43.89 2.90
5466 9690 5.772825 TCAATAAAGTGGCCTTATGCATC 57.227 39.130 0.19 0.00 43.89 3.91
5467 9691 6.736110 AATCAATAAAGTGGCCTTATGCAT 57.264 33.333 3.32 3.79 43.89 3.96
5468 9692 7.838079 ATAATCAATAAAGTGGCCTTATGCA 57.162 32.000 3.32 0.00 43.89 3.96
5469 9693 8.579863 AGAATAATCAATAAAGTGGCCTTATGC 58.420 33.333 3.32 0.00 40.16 3.14
5471 9695 9.003658 CGAGAATAATCAATAAAGTGGCCTTAT 57.996 33.333 3.32 0.00 0.00 1.73
5472 9696 8.208224 TCGAGAATAATCAATAAAGTGGCCTTA 58.792 33.333 3.32 0.00 0.00 2.69
5473 9697 7.054124 TCGAGAATAATCAATAAAGTGGCCTT 58.946 34.615 3.32 0.00 0.00 4.35
5474 9698 6.591935 TCGAGAATAATCAATAAAGTGGCCT 58.408 36.000 3.32 0.00 0.00 5.19
5475 9699 6.073003 CCTCGAGAATAATCAATAAAGTGGCC 60.073 42.308 15.71 0.00 0.00 5.36
5476 9700 6.706270 TCCTCGAGAATAATCAATAAAGTGGC 59.294 38.462 15.71 0.00 0.00 5.01
5477 9701 7.171678 GGTCCTCGAGAATAATCAATAAAGTGG 59.828 40.741 15.71 0.00 0.00 4.00
5478 9702 7.928706 AGGTCCTCGAGAATAATCAATAAAGTG 59.071 37.037 15.71 0.00 0.00 3.16
5479 9703 8.024145 AGGTCCTCGAGAATAATCAATAAAGT 57.976 34.615 15.71 0.00 0.00 2.66
5480 9704 8.894768 AAGGTCCTCGAGAATAATCAATAAAG 57.105 34.615 15.71 0.00 0.00 1.85
5485 9709 9.982651 CTTTATAAGGTCCTCGAGAATAATCAA 57.017 33.333 15.71 0.00 0.00 2.57
5486 9710 9.144298 ACTTTATAAGGTCCTCGAGAATAATCA 57.856 33.333 15.71 0.00 0.00 2.57
5492 9716 9.412460 TGTAATACTTTATAAGGTCCTCGAGAA 57.588 33.333 15.71 0.00 0.00 2.87
5493 9717 8.985315 TGTAATACTTTATAAGGTCCTCGAGA 57.015 34.615 15.71 0.00 0.00 4.04
5494 9718 9.460906 GTTGTAATACTTTATAAGGTCCTCGAG 57.539 37.037 5.13 5.13 0.00 4.04
5495 9719 8.970020 TGTTGTAATACTTTATAAGGTCCTCGA 58.030 33.333 3.13 0.00 0.00 4.04
5496 9720 9.590451 TTGTTGTAATACTTTATAAGGTCCTCG 57.410 33.333 3.13 0.00 0.00 4.63
5502 9726 9.730420 GGCACATTGTTGTAATACTTTATAAGG 57.270 33.333 0.00 0.00 33.76 2.69
5505 9729 9.674068 TCAGGCACATTGTTGTAATACTTTATA 57.326 29.630 0.00 0.00 33.76 0.98
5506 9730 8.574251 TCAGGCACATTGTTGTAATACTTTAT 57.426 30.769 0.00 0.00 33.76 1.40
5507 9731 7.987750 TCAGGCACATTGTTGTAATACTTTA 57.012 32.000 0.00 0.00 33.76 1.85
5508 9732 6.892658 TCAGGCACATTGTTGTAATACTTT 57.107 33.333 0.00 0.00 33.76 2.66
5509 9733 6.892658 TTCAGGCACATTGTTGTAATACTT 57.107 33.333 0.00 0.00 33.76 2.24
5510 9734 6.095440 GGATTCAGGCACATTGTTGTAATACT 59.905 38.462 0.00 0.00 33.76 2.12
5511 9735 6.127758 TGGATTCAGGCACATTGTTGTAATAC 60.128 38.462 0.00 0.00 33.76 1.89
5512 9736 5.948758 TGGATTCAGGCACATTGTTGTAATA 59.051 36.000 0.00 0.00 33.76 0.98
5513 9737 4.771577 TGGATTCAGGCACATTGTTGTAAT 59.228 37.500 0.00 0.00 33.76 1.89
5514 9738 4.022416 GTGGATTCAGGCACATTGTTGTAA 60.022 41.667 0.00 0.00 33.76 2.41
5515 9739 3.505680 GTGGATTCAGGCACATTGTTGTA 59.494 43.478 0.00 0.00 33.76 2.41
5516 9740 2.297033 GTGGATTCAGGCACATTGTTGT 59.703 45.455 0.00 0.00 36.15 3.32
5517 9741 2.353011 GGTGGATTCAGGCACATTGTTG 60.353 50.000 0.00 0.00 0.00 3.33
5518 9742 1.895131 GGTGGATTCAGGCACATTGTT 59.105 47.619 0.00 0.00 0.00 2.83
5519 9743 1.203038 TGGTGGATTCAGGCACATTGT 60.203 47.619 0.00 0.00 0.00 2.71
5520 9744 1.548081 TGGTGGATTCAGGCACATTG 58.452 50.000 0.00 0.00 0.00 2.82
5521 9745 2.381911 GATGGTGGATTCAGGCACATT 58.618 47.619 0.00 0.00 0.00 2.71
5522 9746 1.410648 GGATGGTGGATTCAGGCACAT 60.411 52.381 0.00 0.00 0.00 3.21
5523 9747 0.034186 GGATGGTGGATTCAGGCACA 60.034 55.000 0.00 0.00 0.00 4.57
5524 9748 0.034186 TGGATGGTGGATTCAGGCAC 60.034 55.000 0.00 0.00 0.00 5.01
5525 9749 0.703488 TTGGATGGTGGATTCAGGCA 59.297 50.000 0.00 0.00 0.00 4.75
5526 9750 1.851304 TTTGGATGGTGGATTCAGGC 58.149 50.000 0.00 0.00 0.00 4.85
5527 9751 4.025360 TCATTTTGGATGGTGGATTCAGG 58.975 43.478 0.00 0.00 0.00 3.86
5528 9752 5.361571 TCATCATTTTGGATGGTGGATTCAG 59.638 40.000 3.59 0.00 43.82 3.02
5529 9753 5.270794 TCATCATTTTGGATGGTGGATTCA 58.729 37.500 3.59 0.00 43.82 2.57
5530 9754 5.857471 TCATCATTTTGGATGGTGGATTC 57.143 39.130 3.59 0.00 43.82 2.52
5531 9755 5.129815 CCTTCATCATTTTGGATGGTGGATT 59.870 40.000 3.59 0.00 43.82 3.01
5532 9756 4.652421 CCTTCATCATTTTGGATGGTGGAT 59.348 41.667 3.59 0.00 43.82 3.41
5533 9757 4.025360 CCTTCATCATTTTGGATGGTGGA 58.975 43.478 3.59 0.00 43.82 4.02
5534 9758 3.133362 CCCTTCATCATTTTGGATGGTGG 59.867 47.826 3.59 6.03 43.82 4.61
5535 9759 3.133362 CCCCTTCATCATTTTGGATGGTG 59.867 47.826 3.59 0.00 43.82 4.17
5536 9760 3.246094 ACCCCTTCATCATTTTGGATGGT 60.246 43.478 3.59 0.00 43.82 3.55
5537 9761 3.133362 CACCCCTTCATCATTTTGGATGG 59.867 47.826 3.59 0.00 43.82 3.51
5538 9762 3.431207 GCACCCCTTCATCATTTTGGATG 60.431 47.826 0.00 0.00 44.78 3.51
5539 9763 2.767960 GCACCCCTTCATCATTTTGGAT 59.232 45.455 0.00 0.00 0.00 3.41
5540 9764 2.178580 GCACCCCTTCATCATTTTGGA 58.821 47.619 0.00 0.00 0.00 3.53
5541 9765 2.181975 AGCACCCCTTCATCATTTTGG 58.818 47.619 0.00 0.00 0.00 3.28
5542 9766 3.181483 GCTAGCACCCCTTCATCATTTTG 60.181 47.826 10.63 0.00 0.00 2.44
5543 9767 3.026694 GCTAGCACCCCTTCATCATTTT 58.973 45.455 10.63 0.00 0.00 1.82
5544 9768 2.243221 AGCTAGCACCCCTTCATCATTT 59.757 45.455 18.83 0.00 0.00 2.32
5545 9769 1.849039 AGCTAGCACCCCTTCATCATT 59.151 47.619 18.83 0.00 0.00 2.57
5546 9770 1.142465 CAGCTAGCACCCCTTCATCAT 59.858 52.381 18.83 0.00 0.00 2.45
5547 9771 0.543277 CAGCTAGCACCCCTTCATCA 59.457 55.000 18.83 0.00 0.00 3.07
5548 9772 0.179034 CCAGCTAGCACCCCTTCATC 60.179 60.000 18.83 0.00 0.00 2.92
5549 9773 1.639635 CCCAGCTAGCACCCCTTCAT 61.640 60.000 18.83 0.00 0.00 2.57
5550 9774 2.300967 CCCAGCTAGCACCCCTTCA 61.301 63.158 18.83 0.00 0.00 3.02
5551 9775 2.592308 CCCAGCTAGCACCCCTTC 59.408 66.667 18.83 0.00 0.00 3.46
5552 9776 3.732849 GCCCAGCTAGCACCCCTT 61.733 66.667 18.83 0.00 0.00 3.95
5555 9779 4.803908 GTGGCCCAGCTAGCACCC 62.804 72.222 18.83 11.35 0.00 4.61
5556 9780 2.367202 TAGTGGCCCAGCTAGCACC 61.367 63.158 18.83 12.89 0.00 5.01
5557 9781 3.309582 TAGTGGCCCAGCTAGCAC 58.690 61.111 18.83 4.90 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.