Multiple sequence alignment - TraesCS5D01G228100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G228100 chr5D 100.000 5744 0 0 1 5744 335236408 335230665 0.000000e+00 10608.0
1 TraesCS5D01G228100 chr5D 87.559 1905 195 23 1088 2978 478469258 478467382 0.000000e+00 2167.0
2 TraesCS5D01G228100 chr5D 86.175 962 103 12 3795 4729 478466940 478465982 0.000000e+00 1013.0
3 TraesCS5D01G228100 chr5D 88.778 401 38 4 1244 1640 294359401 294359004 8.650000e-133 484.0
4 TraesCS5D01G228100 chr5D 92.000 75 6 0 5373 5447 335230866 335230792 7.870000e-19 106.0
5 TraesCS5D01G228100 chr5D 92.000 75 6 0 5543 5617 335231036 335230962 7.870000e-19 106.0
6 TraesCS5D01G228100 chr5D 100.000 32 0 0 1 32 517963961 517963992 6.220000e-05 60.2
7 TraesCS5D01G228100 chr5D 100.000 31 0 0 1 31 209653277 209653307 2.240000e-04 58.4
8 TraesCS5D01G228100 chr5A 96.534 3289 85 9 166 3428 436634147 436630862 0.000000e+00 5415.0
9 TraesCS5D01G228100 chr5A 92.499 1853 94 26 3481 5309 436630864 436629033 0.000000e+00 2610.0
10 TraesCS5D01G228100 chr5A 87.579 1892 192 26 1103 2978 597663661 597661797 0.000000e+00 2152.0
11 TraesCS5D01G228100 chr5A 87.342 948 103 10 3795 4729 597661321 597660378 0.000000e+00 1070.0
12 TraesCS5D01G228100 chr5A 94.203 69 4 0 5671 5739 26618387 26618455 7.870000e-19 106.0
13 TraesCS5D01G228100 chr5A 100.000 35 0 0 996 1030 597663746 597663712 1.340000e-06 65.8
14 TraesCS5D01G228100 chr5A 100.000 32 0 0 1 32 472833269 472833300 6.220000e-05 60.2
15 TraesCS5D01G228100 chr5A 100.000 31 0 0 1 31 707033747 707033777 2.240000e-04 58.4
16 TraesCS5D01G228100 chr5B 96.224 3310 98 10 77 3366 392270717 392267415 0.000000e+00 5395.0
17 TraesCS5D01G228100 chr5B 96.200 1921 52 11 3393 5305 392267419 392265512 0.000000e+00 3123.0
18 TraesCS5D01G228100 chr5B 87.342 1896 193 30 1102 2978 586355481 586353614 0.000000e+00 2128.0
19 TraesCS5D01G228100 chr5B 85.759 962 107 9 3795 4729 586353165 586352207 0.000000e+00 990.0
20 TraesCS5D01G228100 chr5B 85.211 284 15 8 5417 5674 392264948 392264666 3.410000e-67 267.0
21 TraesCS5D01G228100 chr5B 91.411 163 13 1 5361 5522 392264826 392264664 7.490000e-54 222.0
22 TraesCS5D01G228100 chr5B 100.000 35 0 0 996 1030 586355573 586355539 1.340000e-06 65.8
23 TraesCS5D01G228100 chr4A 85.714 392 51 4 1248 1638 316873408 316873021 5.360000e-110 409.0
24 TraesCS5D01G228100 chr4A 91.935 62 5 0 962 1023 359397235 359397174 2.850000e-13 87.9
25 TraesCS5D01G228100 chr1D 88.889 135 12 3 5391 5523 21548496 21548629 4.610000e-36 163.0
26 TraesCS5D01G228100 chr6D 88.060 134 15 1 5391 5523 129708965 129709098 2.140000e-34 158.0
27 TraesCS5D01G228100 chr6D 95.714 70 3 0 5675 5744 338794758 338794827 4.700000e-21 113.0
28 TraesCS5D01G228100 chr6D 89.474 57 6 0 5563 5619 129708967 129709023 7.980000e-09 73.1
29 TraesCS5D01G228100 chr6D 92.500 40 2 1 1 40 18512302 18512264 8.040000e-04 56.5
30 TraesCS5D01G228100 chr6B 88.060 134 15 1 5391 5523 227831558 227831691 2.140000e-34 158.0
31 TraesCS5D01G228100 chr6B 86.667 135 16 2 5391 5523 156664153 156664019 1.290000e-31 148.0
32 TraesCS5D01G228100 chr3D 87.879 132 14 2 5391 5521 537469508 537469378 2.770000e-33 154.0
33 TraesCS5D01G228100 chr3D 82.836 134 19 3 5391 5523 537468352 537468222 3.640000e-22 117.0
34 TraesCS5D01G228100 chr3D 87.500 56 7 0 5619 5674 366804323 366804378 1.340000e-06 65.8
35 TraesCS5D01G228100 chr1B 93.333 75 5 0 5545 5619 632766382 632766456 1.690000e-20 111.0
36 TraesCS5D01G228100 chr7A 77.907 172 14 8 5525 5674 47510998 47510829 1.030000e-12 86.1
37 TraesCS5D01G228100 chr6A 96.078 51 2 0 5473 5523 168008055 168008105 3.690000e-12 84.2
38 TraesCS5D01G228100 chr6A 89.474 57 6 0 5563 5619 168007942 168007998 7.980000e-09 73.1
39 TraesCS5D01G228100 chr3A 89.286 56 6 0 5619 5674 562199685 562199630 2.870000e-08 71.3
40 TraesCS5D01G228100 chr3A 92.683 41 2 1 1 40 77378025 77378065 2.240000e-04 58.4
41 TraesCS5D01G228100 chr7D 100.000 31 0 0 1 31 626192337 626192307 2.240000e-04 58.4
42 TraesCS5D01G228100 chr7D 90.698 43 3 1 1 43 415430115 415430156 8.040000e-04 56.5
43 TraesCS5D01G228100 chr2A 90.000 40 4 0 2 41 730111376 730111337 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G228100 chr5D 335230665 335236408 5743 True 10608.000000 10608 100.000000 1 5744 1 chr5D.!!$R2 5743
1 TraesCS5D01G228100 chr5D 478465982 478469258 3276 True 1590.000000 2167 86.867000 1088 4729 2 chr5D.!!$R4 3641
2 TraesCS5D01G228100 chr5A 436629033 436634147 5114 True 4012.500000 5415 94.516500 166 5309 2 chr5A.!!$R1 5143
3 TraesCS5D01G228100 chr5A 597660378 597663746 3368 True 1095.933333 2152 91.640333 996 4729 3 chr5A.!!$R2 3733
4 TraesCS5D01G228100 chr5B 392264664 392270717 6053 True 2251.750000 5395 92.261500 77 5674 4 chr5B.!!$R1 5597
5 TraesCS5D01G228100 chr5B 586352207 586355573 3366 True 1061.266667 2128 91.033667 996 4729 3 chr5B.!!$R2 3733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 625 0.031721 GACCAAACGTCAGGTCGAGT 59.968 55.0 19.61 0.00 44.23 4.18 F
1875 1908 0.321996 AGTTCTTGAAGGACCCGAGC 59.678 55.0 0.00 0.00 0.00 5.03 F
2298 2331 0.242017 GTTTGCAGTGCAGTGATCCC 59.758 55.0 25.76 7.79 40.61 3.85 F
3147 3212 0.320771 GACACATGCTCAGGGAACGT 60.321 55.0 0.00 0.00 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2007 1.983972 TTGCCACACGTGTCAAAAAC 58.016 45.000 20.49 5.25 0.00 2.43 R
3317 3385 0.387239 TCGTATCTGATGCCGATGCG 60.387 55.000 9.30 4.52 44.63 4.73 R
3987 4114 0.949105 CCGTTTCTGGAGGTCCAACG 60.949 60.000 12.75 12.75 46.97 4.10 R
4981 5137 3.228188 TGACTGGAAGATGGCAAAACT 57.772 42.857 0.00 0.00 37.43 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.249020 CGTTGCAACGCACAGGCA 62.249 61.111 35.89 0.00 46.06 4.75
18 19 2.336088 GTTGCAACGCACAGGCAT 59.664 55.556 14.90 0.00 38.71 4.40
19 20 1.578926 GTTGCAACGCACAGGCATA 59.421 52.632 14.90 0.00 38.71 3.14
20 21 0.171007 GTTGCAACGCACAGGCATAT 59.829 50.000 14.90 0.00 38.71 1.78
21 22 0.170784 TTGCAACGCACAGGCATATG 59.829 50.000 0.00 0.00 38.71 1.78
22 23 0.959867 TGCAACGCACAGGCATATGT 60.960 50.000 4.29 0.00 41.24 2.29
40 41 6.763355 CATATGTGCTAGTCTCCCTTAATGT 58.237 40.000 0.00 0.00 0.00 2.71
41 42 4.471904 TGTGCTAGTCTCCCTTAATGTG 57.528 45.455 0.00 0.00 0.00 3.21
42 43 4.093743 TGTGCTAGTCTCCCTTAATGTGA 58.906 43.478 0.00 0.00 0.00 3.58
43 44 4.530553 TGTGCTAGTCTCCCTTAATGTGAA 59.469 41.667 0.00 0.00 0.00 3.18
44 45 5.012664 TGTGCTAGTCTCCCTTAATGTGAAA 59.987 40.000 0.00 0.00 0.00 2.69
45 46 5.351740 GTGCTAGTCTCCCTTAATGTGAAAC 59.648 44.000 0.00 0.00 37.35 2.78
56 57 2.451693 TGTGAAACATAGTCGCCGC 58.548 52.632 0.00 0.00 45.67 6.53
57 58 0.319986 TGTGAAACATAGTCGCCGCA 60.320 50.000 0.00 0.00 45.67 5.69
58 59 1.006832 GTGAAACATAGTCGCCGCAT 58.993 50.000 0.00 0.00 36.32 4.73
59 60 2.198406 GTGAAACATAGTCGCCGCATA 58.802 47.619 0.00 0.00 36.32 3.14
60 61 2.800544 GTGAAACATAGTCGCCGCATAT 59.199 45.455 0.00 0.00 36.32 1.78
61 62 3.985279 GTGAAACATAGTCGCCGCATATA 59.015 43.478 0.00 0.00 36.32 0.86
62 63 4.446385 GTGAAACATAGTCGCCGCATATAA 59.554 41.667 0.00 0.00 36.32 0.98
63 64 5.050634 GTGAAACATAGTCGCCGCATATAAA 60.051 40.000 0.00 0.00 36.32 1.40
64 65 5.524281 TGAAACATAGTCGCCGCATATAAAA 59.476 36.000 0.00 0.00 0.00 1.52
65 66 4.985044 ACATAGTCGCCGCATATAAAAC 57.015 40.909 0.00 0.00 0.00 2.43
66 67 3.427528 ACATAGTCGCCGCATATAAAACG 59.572 43.478 0.00 0.00 0.00 3.60
71 72 1.953772 CCGCATATAAAACGGCCCC 59.046 57.895 0.00 0.00 40.55 5.80
72 73 0.536460 CCGCATATAAAACGGCCCCT 60.536 55.000 0.00 0.00 40.55 4.79
73 74 1.270947 CCGCATATAAAACGGCCCCTA 60.271 52.381 0.00 0.00 40.55 3.53
74 75 2.617021 CCGCATATAAAACGGCCCCTAT 60.617 50.000 0.00 0.00 40.55 2.57
75 76 3.078837 CGCATATAAAACGGCCCCTATT 58.921 45.455 0.00 0.00 0.00 1.73
275 277 0.846870 AAGCAAACCCTAGCCTCCCT 60.847 55.000 0.00 0.00 0.00 4.20
332 334 3.948719 GCCGGTCCCTCAACACCA 61.949 66.667 1.90 0.00 32.33 4.17
405 407 2.577059 CGCTCCAAGCCTCCGTTA 59.423 61.111 0.00 0.00 38.18 3.18
419 421 0.946221 CCGTTATCCGCTGGATCTGC 60.946 60.000 12.43 0.00 42.11 4.26
420 422 0.249447 CGTTATCCGCTGGATCTGCA 60.249 55.000 12.43 0.00 42.11 4.41
604 610 1.685765 CCGGGGATCTCACTGACCA 60.686 63.158 0.00 0.00 0.00 4.02
619 625 0.031721 GACCAAACGTCAGGTCGAGT 59.968 55.000 19.61 0.00 44.23 4.18
705 714 9.106070 GTTTGTTATGTTTAGGGTATAGGTCTG 57.894 37.037 0.00 0.00 0.00 3.51
825 834 3.935203 CTGAGTCATTCCGTAAGCATTGT 59.065 43.478 0.00 0.00 0.00 2.71
838 847 6.252655 CCGTAAGCATTGTTTTACCTTATTGC 59.747 38.462 0.00 0.00 0.00 3.56
839 848 6.252655 CGTAAGCATTGTTTTACCTTATTGCC 59.747 38.462 0.00 0.00 0.00 4.52
841 850 5.478407 AGCATTGTTTTACCTTATTGCCAC 58.522 37.500 0.00 0.00 0.00 5.01
872 882 7.827236 TCATTTATGTGTTCCGAGGATAGTTTT 59.173 33.333 0.00 0.00 0.00 2.43
1362 1389 2.857489 GCGCAATGATGAGATGAAAGCC 60.857 50.000 0.30 0.00 0.00 4.35
1578 1605 2.421751 AGAAGATGAGCAGCAGCAAT 57.578 45.000 3.17 0.00 45.49 3.56
1731 1764 4.397481 TGATGATGATGAGAGTGGTGAC 57.603 45.455 0.00 0.00 0.00 3.67
1875 1908 0.321996 AGTTCTTGAAGGACCCGAGC 59.678 55.000 0.00 0.00 0.00 5.03
1941 1974 0.682209 CGTCGAGGGGTAAGAAGGGA 60.682 60.000 0.00 0.00 0.00 4.20
1974 2007 0.944311 AACGTGTGGAGCAGCTAACG 60.944 55.000 14.56 14.56 37.09 3.18
1998 2031 3.704381 GACACGTGTGGCAAAAACA 57.296 47.368 28.82 0.00 38.82 2.83
2010 2043 1.134551 GCAAAAACACCTGCCCAGAAA 60.135 47.619 0.00 0.00 32.18 2.52
2298 2331 0.242017 GTTTGCAGTGCAGTGATCCC 59.758 55.000 25.76 7.79 40.61 3.85
2448 2481 6.644181 GTGTTGAACTAGTCTACTACAAACCC 59.356 42.308 0.00 0.00 33.62 4.11
2811 2844 8.672823 TTATGGACATCTCATCTCAGATTTTG 57.327 34.615 0.00 0.00 30.07 2.44
2904 2937 3.742327 GCCTGTCTGAGCTATATGCAACA 60.742 47.826 0.00 0.00 45.94 3.33
3054 3119 5.299582 TGCAACAATGACATGACACATAG 57.700 39.130 0.00 0.00 0.00 2.23
3143 3208 2.622942 GTTTTTGACACATGCTCAGGGA 59.377 45.455 0.00 0.00 0.00 4.20
3147 3212 0.320771 GACACATGCTCAGGGAACGT 60.321 55.000 0.00 0.00 0.00 3.99
3148 3213 0.973632 ACACATGCTCAGGGAACGTA 59.026 50.000 0.00 0.00 0.00 3.57
3198 3264 9.747898 AGTTGTTTATATTGTGTTATTGAGGGA 57.252 29.630 0.00 0.00 0.00 4.20
3230 3298 1.664151 GTTACGTATTGCTGCCCTGTC 59.336 52.381 0.00 0.00 0.00 3.51
3307 3375 5.751586 CCTTACTGGTACATATTGGTGGTT 58.248 41.667 0.00 0.00 38.20 3.67
3317 3385 8.403236 GGTACATATTGGTGGTTTTTAGATGAC 58.597 37.037 0.00 0.00 0.00 3.06
3348 3416 5.449314 GCATCAGATACGACTACACTGTCTT 60.449 44.000 0.00 0.00 35.00 3.01
3385 3453 5.689835 TGTATCTGAGCTAGTCTGACAGAT 58.310 41.667 8.73 14.18 45.85 2.90
3612 3698 5.544176 TCTTCTCCTTTCTTGAGCTCCTTTA 59.456 40.000 12.15 0.00 0.00 1.85
3675 3761 4.793028 GCTCTTTTTCTCTTGGTTTTCCCG 60.793 45.833 0.00 0.00 39.73 5.14
3715 3801 8.028938 GGCTTCAACTCTTCATTTTAGCAATAA 58.971 33.333 0.00 0.00 0.00 1.40
3891 4018 5.163683 ACACTTGATCTGTGCAATGCTAATC 60.164 40.000 6.82 4.96 38.86 1.75
3984 4111 2.027745 TGAAATGAGTGAGAGGCAGACC 60.028 50.000 0.00 0.00 0.00 3.85
4527 4660 5.209818 AGAACTTTGTATCGTCACAAGGA 57.790 39.130 16.47 0.63 39.46 3.36
4823 4977 2.159142 ACCGTTCAGAACTTGAGTCGTT 60.159 45.455 11.60 0.00 37.07 3.85
4878 5032 8.470805 TCTGTCATAAATCTACCAAGAAGTCTC 58.529 37.037 0.00 0.00 34.73 3.36
4927 5081 3.889538 TGGGAGTGAGGACTACATATTCG 59.110 47.826 0.00 0.00 34.18 3.34
4981 5137 6.272318 CACATTTCCTGTTTTCTGCAAGTTA 58.728 36.000 0.00 0.00 35.29 2.24
5049 5209 7.391554 AGTGCAAGTTAATCTTTTATCTCTGCA 59.608 33.333 0.00 0.00 34.01 4.41
5084 5247 1.135944 GCGTAGAGCCACAAAAGAAGC 60.136 52.381 0.00 0.00 40.81 3.86
5136 5299 2.156098 GTCCTGGTTTCGTTATTGGCA 58.844 47.619 0.00 0.00 0.00 4.92
5153 5316 4.344359 TGGCACAAGATTACACAGTACA 57.656 40.909 0.00 0.00 31.92 2.90
5154 5317 4.314961 TGGCACAAGATTACACAGTACAG 58.685 43.478 0.00 0.00 31.92 2.74
5156 5319 5.011227 TGGCACAAGATTACACAGTACAGTA 59.989 40.000 0.00 0.00 31.92 2.74
5202 5371 4.142337 TGAATCATGCATGTGATTGGTGAC 60.142 41.667 25.43 8.70 46.02 3.67
5224 5393 1.281867 CCATTGCTCTTCCAGTACCCA 59.718 52.381 0.00 0.00 0.00 4.51
5317 5512 8.821894 GTCCACTAGAAATCAGAAATCATGTAC 58.178 37.037 0.00 0.00 0.00 2.90
5318 5513 8.762645 TCCACTAGAAATCAGAAATCATGTACT 58.237 33.333 0.00 0.00 0.00 2.73
5321 5516 8.207545 ACTAGAAATCAGAAATCATGTACTCCC 58.792 37.037 0.00 0.00 0.00 4.30
5322 5517 7.205515 AGAAATCAGAAATCATGTACTCCCT 57.794 36.000 0.00 0.00 0.00 4.20
5323 5518 7.278875 AGAAATCAGAAATCATGTACTCCCTC 58.721 38.462 0.00 0.00 0.00 4.30
5324 5519 6.821616 AATCAGAAATCATGTACTCCCTCT 57.178 37.500 0.00 0.00 0.00 3.69
5325 5520 7.921041 AATCAGAAATCATGTACTCCCTCTA 57.079 36.000 0.00 0.00 0.00 2.43
5327 5522 9.607333 AATCAGAAATCATGTACTCCCTCTATA 57.393 33.333 0.00 0.00 0.00 1.31
5328 5523 9.607333 ATCAGAAATCATGTACTCCCTCTATAA 57.393 33.333 0.00 0.00 0.00 0.98
5329 5524 9.434275 TCAGAAATCATGTACTCCCTCTATAAA 57.566 33.333 0.00 0.00 0.00 1.40
5330 5525 9.703892 CAGAAATCATGTACTCCCTCTATAAAG 57.296 37.037 0.00 0.00 0.00 1.85
5368 5706 1.156736 ATGACCGTGCTTGTTGCTAC 58.843 50.000 0.00 0.00 43.37 3.58
5389 5727 7.070183 GCTACGAAGCTATAAAAAGTTATGCC 58.930 38.462 0.00 0.00 45.85 4.40
5390 5728 6.995511 ACGAAGCTATAAAAAGTTATGCCA 57.004 33.333 0.00 0.00 32.10 4.92
5391 5729 6.782150 ACGAAGCTATAAAAAGTTATGCCAC 58.218 36.000 0.00 0.00 32.10 5.01
5392 5730 6.598064 ACGAAGCTATAAAAAGTTATGCCACT 59.402 34.615 0.00 0.00 32.10 4.00
5397 5735 6.473455 GCTATAAAAAGTTATGCCACTGCTTG 59.527 38.462 0.00 0.00 38.71 4.01
5447 6079 6.864360 ATGTTTGCATTTGTTATTTGTGCT 57.136 29.167 0.00 0.00 36.78 4.40
5474 6107 3.558931 AGTGTTGGTCTCACATGTGAA 57.441 42.857 27.63 16.32 39.39 3.18
5516 6149 6.642707 TTTGTTTTAGGTCCCACATGTAAG 57.357 37.500 0.00 0.00 0.00 2.34
5547 6180 2.093306 AATGCTAGTGCGTTGCTACA 57.907 45.000 0.00 0.00 45.65 2.74
5549 6182 1.428448 TGCTAGTGCGTTGCTACAAG 58.572 50.000 0.00 0.00 43.34 3.16
5561 6202 5.163854 GCGTTGCTACAAGAAGTTATGTCAT 60.164 40.000 0.00 0.00 0.00 3.06
5591 6232 6.749923 AGAGCATAATTTTGAGTTGGAGTC 57.250 37.500 0.00 0.00 0.00 3.36
5593 6234 6.888632 AGAGCATAATTTTGAGTTGGAGTCAT 59.111 34.615 0.00 0.00 0.00 3.06
5619 6260 6.656945 TGTTTGCATTTGTTATTTGTGCATC 58.343 32.000 0.00 0.00 44.27 3.91
5620 6261 6.259387 TGTTTGCATTTGTTATTTGTGCATCA 59.741 30.769 0.00 0.67 44.27 3.07
5639 6297 8.969267 GTGCATCATATGAAAGTAGTAGTGTAC 58.031 37.037 9.99 6.12 0.00 2.90
5662 6320 9.550811 GTACTTGTTTATTTGTTTTAGATCCCG 57.449 33.333 0.00 0.00 0.00 5.14
5674 6332 6.537301 TGTTTTAGATCCCGCATGTAAGTAAG 59.463 38.462 0.00 0.00 0.00 2.34
5675 6333 3.753294 AGATCCCGCATGTAAGTAAGG 57.247 47.619 0.00 0.00 0.00 2.69
5676 6334 2.368875 AGATCCCGCATGTAAGTAAGGG 59.631 50.000 0.00 0.00 40.16 3.95
5677 6335 0.179468 TCCCGCATGTAAGTAAGGGC 59.821 55.000 0.00 0.00 38.73 5.19
5678 6336 1.157870 CCCGCATGTAAGTAAGGGCG 61.158 60.000 0.00 0.00 43.68 6.13
5679 6337 2.307363 CGCATGTAAGTAAGGGCGG 58.693 57.895 0.00 0.00 40.70 6.13
5680 6338 0.179094 CGCATGTAAGTAAGGGCGGA 60.179 55.000 0.00 0.00 40.70 5.54
5681 6339 1.583054 GCATGTAAGTAAGGGCGGAG 58.417 55.000 0.00 0.00 0.00 4.63
5695 6353 4.906792 GGAGCCAGGCTAGCGCTG 62.907 72.222 22.90 19.55 39.88 5.18
5696 6354 4.906792 GAGCCAGGCTAGCGCTGG 62.907 72.222 32.02 32.02 39.88 4.85
5715 6373 4.029809 CCCCGGGCCTTCTTCGTT 62.030 66.667 17.73 0.00 0.00 3.85
5716 6374 2.746277 CCCGGGCCTTCTTCGTTG 60.746 66.667 8.08 0.00 0.00 4.10
5717 6375 3.431725 CCGGGCCTTCTTCGTTGC 61.432 66.667 0.84 0.00 0.00 4.17
5718 6376 2.358737 CGGGCCTTCTTCGTTGCT 60.359 61.111 0.84 0.00 0.00 3.91
5719 6377 1.079405 CGGGCCTTCTTCGTTGCTA 60.079 57.895 0.84 0.00 0.00 3.49
5720 6378 1.359459 CGGGCCTTCTTCGTTGCTAC 61.359 60.000 0.84 0.00 0.00 3.58
5721 6379 0.321298 GGGCCTTCTTCGTTGCTACA 60.321 55.000 0.84 0.00 0.00 2.74
5722 6380 1.519408 GGCCTTCTTCGTTGCTACAA 58.481 50.000 0.00 0.00 0.00 2.41
5723 6381 2.084546 GGCCTTCTTCGTTGCTACAAT 58.915 47.619 0.00 0.00 0.00 2.71
5724 6382 3.267483 GGCCTTCTTCGTTGCTACAATA 58.733 45.455 0.00 0.00 0.00 1.90
5725 6383 3.687698 GGCCTTCTTCGTTGCTACAATAA 59.312 43.478 0.00 0.00 0.00 1.40
5726 6384 4.335594 GGCCTTCTTCGTTGCTACAATAAT 59.664 41.667 0.00 0.00 0.00 1.28
5727 6385 5.266242 GCCTTCTTCGTTGCTACAATAATG 58.734 41.667 0.00 0.00 0.00 1.90
5728 6386 5.163754 GCCTTCTTCGTTGCTACAATAATGT 60.164 40.000 0.00 0.00 43.74 2.71
5729 6387 6.036735 GCCTTCTTCGTTGCTACAATAATGTA 59.963 38.462 0.00 0.00 41.05 2.29
5730 6388 7.399523 CCTTCTTCGTTGCTACAATAATGTAC 58.600 38.462 0.00 0.00 41.05 2.90
5731 6389 7.064134 CCTTCTTCGTTGCTACAATAATGTACA 59.936 37.037 0.00 0.00 41.05 2.90
5732 6390 7.520119 TCTTCGTTGCTACAATAATGTACAG 57.480 36.000 0.33 0.00 41.05 2.74
5733 6391 7.094631 TCTTCGTTGCTACAATAATGTACAGT 58.905 34.615 0.33 0.07 41.05 3.55
5734 6392 6.641176 TCGTTGCTACAATAATGTACAGTG 57.359 37.500 5.98 1.78 41.05 3.66
5735 6393 6.391537 TCGTTGCTACAATAATGTACAGTGA 58.608 36.000 5.98 0.00 41.05 3.41
5736 6394 6.309494 TCGTTGCTACAATAATGTACAGTGAC 59.691 38.462 5.98 0.00 41.05 3.67
5737 6395 6.455113 CGTTGCTACAATAATGTACAGTGACC 60.455 42.308 5.98 0.00 41.05 4.02
5738 6396 6.043854 TGCTACAATAATGTACAGTGACCA 57.956 37.500 5.98 0.00 41.05 4.02
5739 6397 6.468543 TGCTACAATAATGTACAGTGACCAA 58.531 36.000 5.98 0.00 41.05 3.67
5740 6398 7.109501 TGCTACAATAATGTACAGTGACCAAT 58.890 34.615 5.98 0.00 41.05 3.16
5741 6399 8.261522 TGCTACAATAATGTACAGTGACCAATA 58.738 33.333 5.98 0.00 41.05 1.90
5742 6400 8.765219 GCTACAATAATGTACAGTGACCAATAG 58.235 37.037 5.98 2.15 41.05 1.73
5743 6401 9.817809 CTACAATAATGTACAGTGACCAATAGT 57.182 33.333 5.98 0.00 41.05 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.171007 ATATGCCTGTGCGTTGCAAC 59.829 50.000 19.89 19.89 41.47 4.17
2 3 0.170784 CATATGCCTGTGCGTTGCAA 59.829 50.000 0.00 0.00 41.47 4.08
3 4 0.959867 ACATATGCCTGTGCGTTGCA 60.960 50.000 1.58 0.00 41.78 4.08
4 5 0.523968 CACATATGCCTGTGCGTTGC 60.524 55.000 1.58 0.00 40.03 4.17
5 6 3.609604 CACATATGCCTGTGCGTTG 57.390 52.632 1.58 0.00 40.03 4.10
16 17 6.648310 CACATTAAGGGAGACTAGCACATATG 59.352 42.308 0.00 0.00 0.00 1.78
17 18 6.554982 TCACATTAAGGGAGACTAGCACATAT 59.445 38.462 0.00 0.00 0.00 1.78
18 19 5.897250 TCACATTAAGGGAGACTAGCACATA 59.103 40.000 0.00 0.00 0.00 2.29
19 20 4.716784 TCACATTAAGGGAGACTAGCACAT 59.283 41.667 0.00 0.00 0.00 3.21
20 21 4.093743 TCACATTAAGGGAGACTAGCACA 58.906 43.478 0.00 0.00 0.00 4.57
21 22 4.737855 TCACATTAAGGGAGACTAGCAC 57.262 45.455 0.00 0.00 0.00 4.40
22 23 5.012664 TGTTTCACATTAAGGGAGACTAGCA 59.987 40.000 0.00 0.00 35.83 3.49
23 24 5.488341 TGTTTCACATTAAGGGAGACTAGC 58.512 41.667 0.00 0.00 35.83 3.42
24 25 8.478877 ACTATGTTTCACATTAAGGGAGACTAG 58.521 37.037 0.00 0.00 39.88 2.57
25 26 8.375493 ACTATGTTTCACATTAAGGGAGACTA 57.625 34.615 0.00 0.00 39.88 2.59
26 27 7.259088 ACTATGTTTCACATTAAGGGAGACT 57.741 36.000 0.00 0.00 39.88 3.24
27 28 6.255887 CGACTATGTTTCACATTAAGGGAGAC 59.744 42.308 0.00 0.00 39.88 3.36
28 29 6.338146 CGACTATGTTTCACATTAAGGGAGA 58.662 40.000 0.00 0.00 39.88 3.71
29 30 5.006746 GCGACTATGTTTCACATTAAGGGAG 59.993 44.000 0.00 0.00 39.88 4.30
30 31 4.873827 GCGACTATGTTTCACATTAAGGGA 59.126 41.667 0.00 0.00 39.88 4.20
31 32 4.035208 GGCGACTATGTTTCACATTAAGGG 59.965 45.833 0.00 0.00 39.88 3.95
32 33 4.260212 CGGCGACTATGTTTCACATTAAGG 60.260 45.833 0.00 0.00 39.88 2.69
33 34 4.782195 GCGGCGACTATGTTTCACATTAAG 60.782 45.833 12.98 0.00 39.88 1.85
34 35 3.062909 GCGGCGACTATGTTTCACATTAA 59.937 43.478 12.98 0.00 39.88 1.40
35 36 2.605818 GCGGCGACTATGTTTCACATTA 59.394 45.455 12.98 0.00 39.88 1.90
36 37 1.396996 GCGGCGACTATGTTTCACATT 59.603 47.619 12.98 0.00 39.88 2.71
37 38 1.006832 GCGGCGACTATGTTTCACAT 58.993 50.000 12.98 0.00 42.35 3.21
38 39 0.319986 TGCGGCGACTATGTTTCACA 60.320 50.000 12.98 0.00 0.00 3.58
39 40 1.006832 ATGCGGCGACTATGTTTCAC 58.993 50.000 12.98 0.00 0.00 3.18
40 41 2.588027 TATGCGGCGACTATGTTTCA 57.412 45.000 12.98 0.00 0.00 2.69
41 42 5.585500 TTTATATGCGGCGACTATGTTTC 57.415 39.130 12.98 0.00 0.00 2.78
42 43 5.557514 CGTTTTATATGCGGCGACTATGTTT 60.558 40.000 12.98 0.00 0.00 2.83
43 44 4.084745 CGTTTTATATGCGGCGACTATGTT 60.085 41.667 12.98 0.00 0.00 2.71
44 45 3.427528 CGTTTTATATGCGGCGACTATGT 59.572 43.478 12.98 2.26 0.00 2.29
45 46 3.181534 CCGTTTTATATGCGGCGACTATG 60.182 47.826 12.98 0.00 38.99 2.23
46 47 2.991190 CCGTTTTATATGCGGCGACTAT 59.009 45.455 12.98 9.01 38.99 2.12
47 48 2.396601 CCGTTTTATATGCGGCGACTA 58.603 47.619 12.98 0.23 38.99 2.59
48 49 1.214367 CCGTTTTATATGCGGCGACT 58.786 50.000 12.98 0.00 38.99 4.18
49 50 3.721466 CCGTTTTATATGCGGCGAC 57.279 52.632 12.98 2.02 38.99 5.19
54 55 2.172851 TAGGGGCCGTTTTATATGCG 57.827 50.000 3.09 0.00 0.00 4.73
55 56 4.379082 CGAAATAGGGGCCGTTTTATATGC 60.379 45.833 3.09 0.00 0.00 3.14
56 57 4.998672 TCGAAATAGGGGCCGTTTTATATG 59.001 41.667 3.09 0.00 0.00 1.78
57 58 5.231702 TCGAAATAGGGGCCGTTTTATAT 57.768 39.130 3.09 0.00 0.00 0.86
58 59 4.503643 CCTCGAAATAGGGGCCGTTTTATA 60.504 45.833 3.09 0.00 32.55 0.98
59 60 3.473625 CTCGAAATAGGGGCCGTTTTAT 58.526 45.455 3.09 0.00 0.00 1.40
60 61 2.420408 CCTCGAAATAGGGGCCGTTTTA 60.420 50.000 3.09 0.00 32.55 1.52
61 62 1.680860 CCTCGAAATAGGGGCCGTTTT 60.681 52.381 3.09 0.00 32.55 2.43
62 63 0.107361 CCTCGAAATAGGGGCCGTTT 60.107 55.000 3.09 1.56 32.55 3.60
63 64 1.525442 CCTCGAAATAGGGGCCGTT 59.475 57.895 3.09 0.00 32.55 4.44
64 65 3.227250 CCTCGAAATAGGGGCCGT 58.773 61.111 3.37 3.37 32.55 5.68
70 71 2.483188 GCTGTGTACCCCTCGAAATAGG 60.483 54.545 0.00 0.00 36.30 2.57
71 72 2.483188 GGCTGTGTACCCCTCGAAATAG 60.483 54.545 0.00 0.00 0.00 1.73
72 73 1.483415 GGCTGTGTACCCCTCGAAATA 59.517 52.381 0.00 0.00 0.00 1.40
73 74 0.252197 GGCTGTGTACCCCTCGAAAT 59.748 55.000 0.00 0.00 0.00 2.17
74 75 1.675219 GGCTGTGTACCCCTCGAAA 59.325 57.895 0.00 0.00 0.00 3.46
75 76 2.288025 GGGCTGTGTACCCCTCGAA 61.288 63.158 0.00 0.00 42.01 3.71
105 106 3.081804 ACATAACCCCTGCTTTTTCTCG 58.918 45.455 0.00 0.00 0.00 4.04
144 145 0.477204 GGGCCCAGACTATAAACCCC 59.523 60.000 19.95 0.00 0.00 4.95
275 277 1.203063 CGGAGGATGGAGGTGGAGATA 60.203 57.143 0.00 0.00 0.00 1.98
405 407 2.037620 GAGGTGCAGATCCAGCGGAT 62.038 60.000 9.42 9.42 46.28 4.18
419 421 2.202797 CGTGGAGCGGATGAGGTG 60.203 66.667 0.00 0.00 36.85 4.00
506 508 2.124983 GCGAGATTGCAGGCAGGA 60.125 61.111 0.00 0.00 34.15 3.86
532 538 0.398664 TAGAGCTGGAACCTAGGGCC 60.399 60.000 14.81 14.54 0.00 5.80
534 540 1.044611 GCTAGAGCTGGAACCTAGGG 58.955 60.000 14.81 0.00 38.21 3.53
584 590 2.041922 TCAGTGAGATCCCCGGGG 60.042 66.667 35.80 35.80 0.00 5.73
604 610 1.955080 AGAGAACTCGACCTGACGTTT 59.045 47.619 0.00 0.00 34.09 3.60
619 625 1.795170 GCGCAACCCAAGCAAGAGAA 61.795 55.000 0.30 0.00 0.00 2.87
782 791 1.231221 TGAACGAATCAAACCCCGTG 58.769 50.000 0.00 0.00 34.30 4.94
783 792 2.081462 GATGAACGAATCAAACCCCGT 58.919 47.619 0.00 0.00 42.54 5.28
784 793 2.095853 CAGATGAACGAATCAAACCCCG 59.904 50.000 0.00 0.00 42.54 5.73
825 834 5.133941 TGACACAGTGGCAATAAGGTAAAA 58.866 37.500 6.63 0.00 28.38 1.52
838 847 4.378356 CGGAACACATAAATGACACAGTGG 60.378 45.833 5.31 0.00 0.00 4.00
839 848 4.450757 TCGGAACACATAAATGACACAGTG 59.549 41.667 0.00 0.00 0.00 3.66
841 850 4.093408 CCTCGGAACACATAAATGACACAG 59.907 45.833 0.00 0.00 0.00 3.66
1362 1389 3.190849 CGCATCTGGTCGGCAGTG 61.191 66.667 0.00 0.00 0.00 3.66
1578 1605 4.887290 GCATTTAGCGCCTTTGCA 57.113 50.000 2.29 0.00 37.32 4.08
1731 1764 2.812358 TATCCGGATCCACAACATCG 57.188 50.000 23.08 0.00 0.00 3.84
1875 1908 7.912056 ATCAACAATATCCCATGTAATCTCG 57.088 36.000 0.00 0.00 0.00 4.04
1974 2007 1.983972 TTGCCACACGTGTCAAAAAC 58.016 45.000 20.49 5.25 0.00 2.43
1998 2031 2.452600 TTTCAAGTTTCTGGGCAGGT 57.547 45.000 0.00 0.00 0.00 4.00
2034 2067 2.821969 GTTGACATCAAACTGGGCAGAT 59.178 45.455 0.00 0.00 37.63 2.90
2298 2331 8.153550 AGCCTCTGAACATAATCTTTGGTATAG 58.846 37.037 0.00 0.00 0.00 1.31
2448 2481 7.974482 TCTCATTGCATCATATACTTCTTGG 57.026 36.000 0.00 0.00 0.00 3.61
2811 2844 1.747745 GGCCATGACCCGGTTGTAC 60.748 63.158 0.00 0.00 0.00 2.90
2833 2866 1.379309 GGAAGGCGCATAACCCCAA 60.379 57.895 10.83 0.00 0.00 4.12
2904 2937 4.133078 CAAGCAACTCTTTCACTCTTCCT 58.867 43.478 0.00 0.00 31.27 3.36
2979 3012 4.871822 TCACATGATAGACAAGAGGGAGA 58.128 43.478 0.00 0.00 0.00 3.71
3054 3119 2.379005 GGAAAATGGTGGATCCCTGTC 58.621 52.381 9.90 0.00 34.77 3.51
3143 3208 0.606604 CTACCACTGGGCAGTACGTT 59.393 55.000 0.00 0.00 40.20 3.99
3147 3212 2.425829 CCTATCCTACCACTGGGCAGTA 60.426 54.545 0.00 0.00 40.20 2.74
3148 3213 1.692762 CCTATCCTACCACTGGGCAGT 60.693 57.143 0.00 0.00 43.61 4.40
3198 3264 6.423905 CAGCAATACGTAACAATACAGCCTAT 59.576 38.462 0.00 0.00 32.02 2.57
3230 3298 1.076332 GGACTCGTGGTTCCATTTCG 58.924 55.000 0.00 0.00 0.00 3.46
3307 3375 2.017138 TGCCGATGCGTCATCTAAAA 57.983 45.000 6.75 0.34 41.78 1.52
3317 3385 0.387239 TCGTATCTGATGCCGATGCG 60.387 55.000 9.30 4.52 44.63 4.73
3348 3416 5.987953 GCTCAGATACAATGATAACAGAGCA 59.012 40.000 0.00 0.00 42.98 4.26
3675 3761 1.888512 TGAAGCCTGCAAGTCAATTCC 59.111 47.619 0.00 0.00 0.00 3.01
3804 3931 3.731089 CATCATCCTTCTCCTCTCAAGC 58.269 50.000 0.00 0.00 0.00 4.01
3891 4018 0.966920 AAGCCATATACGGGACCTCG 59.033 55.000 0.00 0.00 0.00 4.63
3984 4111 2.143925 GTTTCTGGAGGTCCAACGAAG 58.856 52.381 0.00 0.00 46.97 3.79
3987 4114 0.949105 CCGTTTCTGGAGGTCCAACG 60.949 60.000 12.75 12.75 46.97 4.10
4823 4977 7.013274 ACAGAAGCTACAAAAATAGAGCAAACA 59.987 33.333 0.00 0.00 37.40 2.83
4878 5032 7.758076 TGATACAAACCAGACAACTATTACTCG 59.242 37.037 0.00 0.00 0.00 4.18
4981 5137 3.228188 TGACTGGAAGATGGCAAAACT 57.772 42.857 0.00 0.00 37.43 2.66
5021 5181 8.394121 CAGAGATAAAAGATTAACTTGCACTCC 58.606 37.037 0.00 0.00 38.98 3.85
5022 5182 7.907563 GCAGAGATAAAAGATTAACTTGCACTC 59.092 37.037 0.00 0.00 38.98 3.51
5084 5247 9.185192 GTTTTGAAGATCAACAGTAAAATCCTG 57.815 33.333 0.00 0.00 35.89 3.86
5136 5299 9.998106 AAAGAATACTGTACTGTGTAATCTTGT 57.002 29.630 15.01 7.69 38.29 3.16
5174 5343 5.172205 CAATCACATGCATGATTCAACCAA 58.828 37.500 32.75 7.29 44.30 3.67
5180 5349 4.142337 TGTCACCAATCACATGCATGATTC 60.142 41.667 32.75 11.68 44.30 2.52
5202 5371 2.359900 GGTACTGGAAGAGCAATGGTG 58.640 52.381 0.00 0.00 37.43 4.17
5224 5393 2.961062 AGCTGGAACTGAACTGCAATTT 59.039 40.909 0.00 0.00 34.49 1.82
5329 5524 8.559536 CGGTCATTGTGCTAATATTTATGTTCT 58.440 33.333 0.00 0.00 0.00 3.01
5330 5525 8.342634 ACGGTCATTGTGCTAATATTTATGTTC 58.657 33.333 0.00 0.00 0.00 3.18
5347 5685 2.800096 GCAACAAGCACGGTCATTG 58.200 52.632 0.00 1.38 44.79 2.82
5368 5706 6.907212 CAGTGGCATAACTTTTTATAGCTTCG 59.093 38.462 0.00 0.00 0.00 3.79
5380 5718 3.341823 CTCTCAAGCAGTGGCATAACTT 58.658 45.455 0.00 0.00 44.61 2.66
5381 5719 2.983229 CTCTCAAGCAGTGGCATAACT 58.017 47.619 0.00 0.00 44.61 2.24
5397 5735 4.880696 ACTCCAGCTCAAAATTATGCTCTC 59.119 41.667 0.00 0.00 33.03 3.20
5411 5749 3.273434 TGCAAACATATGACTCCAGCTC 58.727 45.455 10.38 0.00 0.00 4.09
5414 5752 5.957798 ACAAATGCAAACATATGACTCCAG 58.042 37.500 10.38 0.00 34.62 3.86
5416 5754 8.931385 AATAACAAATGCAAACATATGACTCC 57.069 30.769 10.38 0.00 34.62 3.85
5443 6075 1.926510 GACCAACACTTGCAAAAGCAC 59.073 47.619 0.00 0.00 0.00 4.40
5447 6079 2.822561 TGTGAGACCAACACTTGCAAAA 59.177 40.909 0.00 0.00 38.81 2.44
5505 6138 4.277174 TGTGCACTTTTACTTACATGTGGG 59.723 41.667 19.41 3.41 0.00 4.61
5538 6171 5.839262 TGACATAACTTCTTGTAGCAACG 57.161 39.130 0.00 0.00 0.00 4.10
5586 6227 8.931385 AATAACAAATGCAAACATATGACTCC 57.069 30.769 10.38 0.00 34.62 3.85
5591 6232 8.228464 TGCACAAATAACAAATGCAAACATATG 58.772 29.630 0.00 0.00 43.00 1.78
5593 6234 7.719778 TGCACAAATAACAAATGCAAACATA 57.280 28.000 0.00 0.00 43.00 2.29
5639 6297 7.087639 TGCGGGATCTAAAACAAATAAACAAG 58.912 34.615 0.00 0.00 0.00 3.16
5657 6315 1.202770 GCCCTTACTTACATGCGGGAT 60.203 52.381 0.00 0.00 33.46 3.85
5662 6320 1.583054 CTCCGCCCTTACTTACATGC 58.417 55.000 0.00 0.00 0.00 4.06
5678 6336 4.906792 CAGCGCTAGCCTGGCTCC 62.907 72.222 27.16 16.35 46.67 4.70
5679 6337 4.906792 CCAGCGCTAGCCTGGCTC 62.907 72.222 28.32 11.16 46.67 4.70
5698 6356 4.029809 AACGAAGAAGGCCCGGGG 62.030 66.667 25.28 9.31 0.00 5.73
5699 6357 2.746277 CAACGAAGAAGGCCCGGG 60.746 66.667 19.09 19.09 0.00 5.73
5700 6358 2.515996 TAGCAACGAAGAAGGCCCGG 62.516 60.000 0.00 0.00 0.00 5.73
5701 6359 1.079405 TAGCAACGAAGAAGGCCCG 60.079 57.895 0.00 0.00 0.00 6.13
5702 6360 0.321298 TGTAGCAACGAAGAAGGCCC 60.321 55.000 0.00 0.00 0.00 5.80
5703 6361 1.519408 TTGTAGCAACGAAGAAGGCC 58.481 50.000 0.00 0.00 0.00 5.19
5704 6362 4.939509 TTATTGTAGCAACGAAGAAGGC 57.060 40.909 0.00 0.00 0.00 4.35
5705 6363 6.422776 ACATTATTGTAGCAACGAAGAAGG 57.577 37.500 0.00 0.00 33.16 3.46
5706 6364 7.959733 TGTACATTATTGTAGCAACGAAGAAG 58.040 34.615 0.00 0.00 38.98 2.85
5707 6365 7.601130 ACTGTACATTATTGTAGCAACGAAGAA 59.399 33.333 0.00 0.00 38.98 2.52
5708 6366 7.062956 CACTGTACATTATTGTAGCAACGAAGA 59.937 37.037 0.00 0.00 38.98 2.87
5709 6367 7.062956 TCACTGTACATTATTGTAGCAACGAAG 59.937 37.037 0.00 0.00 38.98 3.79
5710 6368 6.869388 TCACTGTACATTATTGTAGCAACGAA 59.131 34.615 0.00 0.00 38.98 3.85
5711 6369 6.309494 GTCACTGTACATTATTGTAGCAACGA 59.691 38.462 0.00 0.00 38.98 3.85
5712 6370 6.455113 GGTCACTGTACATTATTGTAGCAACG 60.455 42.308 0.00 0.00 38.98 4.10
5713 6371 6.370442 TGGTCACTGTACATTATTGTAGCAAC 59.630 38.462 0.00 0.00 38.98 4.17
5714 6372 6.468543 TGGTCACTGTACATTATTGTAGCAA 58.531 36.000 0.00 0.00 38.98 3.91
5715 6373 6.043854 TGGTCACTGTACATTATTGTAGCA 57.956 37.500 0.00 0.58 38.98 3.49
5716 6374 6.978343 TTGGTCACTGTACATTATTGTAGC 57.022 37.500 0.00 0.00 38.98 3.58
5717 6375 9.817809 ACTATTGGTCACTGTACATTATTGTAG 57.182 33.333 0.00 0.00 38.98 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.