Multiple sequence alignment - TraesCS5D01G227700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G227700 chr5D 100.000 2519 0 0 1 2519 335120452 335122970 0.000000e+00 4652.0
1 TraesCS5D01G227700 chr5D 87.874 1171 83 27 481 1631 335086812 335087943 0.000000e+00 1321.0
2 TraesCS5D01G227700 chr5D 91.702 940 62 8 716 1639 334970055 334969116 0.000000e+00 1290.0
3 TraesCS5D01G227700 chr5D 86.176 991 72 36 677 1628 334991102 334990138 0.000000e+00 1011.0
4 TraesCS5D01G227700 chr5D 92.818 181 13 0 2109 2289 496223879 496223699 1.920000e-66 263.0
5 TraesCS5D01G227700 chr5D 79.221 154 24 7 119 268 312722483 312722632 1.590000e-17 100.0
6 TraesCS5D01G227700 chr5B 91.773 1410 66 9 599 1984 392118457 392119840 0.000000e+00 1916.0
7 TraesCS5D01G227700 chr5B 87.689 991 85 12 676 1639 391826810 391825830 0.000000e+00 1120.0
8 TraesCS5D01G227700 chr5B 87.358 878 82 20 711 1576 391866545 391867405 0.000000e+00 979.0
9 TraesCS5D01G227700 chr5B 87.682 617 53 12 1 615 392070521 392071116 0.000000e+00 697.0
10 TraesCS5D01G227700 chr5B 87.520 617 54 12 1 615 392117841 392118436 0.000000e+00 691.0
11 TraesCS5D01G227700 chr5B 87.174 460 40 9 158 615 392077972 392078414 2.890000e-139 505.0
12 TraesCS5D01G227700 chr5B 91.700 253 10 6 1739 1984 392079552 392079800 8.630000e-90 340.0
13 TraesCS5D01G227700 chr5B 98.630 146 2 0 1965 2110 392085244 392085389 2.490000e-65 259.0
14 TraesCS5D01G227700 chr5B 98.630 146 2 0 1965 2110 392125280 392125425 2.490000e-65 259.0
15 TraesCS5D01G227700 chr5B 76.256 219 29 14 10 223 469298756 469298556 7.420000e-16 95.3
16 TraesCS5D01G227700 chr5A 90.586 956 55 10 1165 2109 436613997 436614928 0.000000e+00 1234.0
17 TraesCS5D01G227700 chr5A 89.651 889 77 12 746 1625 436329417 436328535 0.000000e+00 1118.0
18 TraesCS5D01G227700 chr5A 87.165 896 89 18 756 1640 436548621 436549501 0.000000e+00 994.0
19 TraesCS5D01G227700 chr7B 86.857 700 58 15 488 1166 141009272 141008586 0.000000e+00 752.0
20 TraesCS5D01G227700 chr7B 81.935 155 18 8 119 268 688297635 688297486 3.400000e-24 122.0
21 TraesCS5D01G227700 chr7D 84.495 703 63 26 481 1166 175662420 175661747 0.000000e+00 652.0
22 TraesCS5D01G227700 chr7A 85.965 513 43 15 682 1166 177344802 177344291 2.870000e-144 521.0
23 TraesCS5D01G227700 chr7A 93.450 229 10 2 2288 2516 337331475 337331698 4.020000e-88 335.0
24 TraesCS5D01G227700 chr4D 93.478 230 13 2 2288 2516 229042321 229042549 8.630000e-90 340.0
25 TraesCS5D01G227700 chr3D 94.222 225 8 1 2288 2512 128349967 128350186 3.100000e-89 339.0
26 TraesCS5D01G227700 chr3D 93.450 229 10 1 2288 2516 122151093 122151316 4.020000e-88 335.0
27 TraesCS5D01G227700 chr3D 93.103 232 11 1 2288 2519 464859810 464859584 4.020000e-88 335.0
28 TraesCS5D01G227700 chr3D 100.000 28 0 0 2127 2154 463690407 463690380 5.000000e-03 52.8
29 TraesCS5D01G227700 chr6D 93.103 232 11 1 2288 2519 28048900 28048674 4.020000e-88 335.0
30 TraesCS5D01G227700 chr6D 93.103 232 11 1 2285 2516 179949471 179949697 4.020000e-88 335.0
31 TraesCS5D01G227700 chr1D 93.450 229 10 1 2288 2516 102949365 102949588 4.020000e-88 335.0
32 TraesCS5D01G227700 chr1D 93.103 232 11 1 2288 2519 201365746 201365520 4.020000e-88 335.0
33 TraesCS5D01G227700 chrUn 98.630 146 2 0 1965 2110 267450346 267450491 2.490000e-65 259.0
34 TraesCS5D01G227700 chrUn 98.630 146 2 0 1965 2110 339808735 339808590 2.490000e-65 259.0
35 TraesCS5D01G227700 chr1A 94.161 137 7 1 2110 2246 133170777 133170642 9.130000e-50 207.0
36 TraesCS5D01G227700 chr2D 79.221 231 27 16 119 343 287655352 287655567 9.390000e-30 141.0
37 TraesCS5D01G227700 chr2A 77.670 206 34 11 144 343 315442193 315442392 5.690000e-22 115.0
38 TraesCS5D01G227700 chr3A 83.206 131 13 7 144 268 145906707 145906834 7.370000e-21 111.0
39 TraesCS5D01G227700 chr1B 74.569 232 45 13 22 246 329967915 329967691 3.450000e-14 89.8
40 TraesCS5D01G227700 chr6B 76.074 163 24 10 184 344 196257720 196257571 1.250000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G227700 chr5D 335120452 335122970 2518 False 4652.0 4652 100.0000 1 2519 1 chr5D.!!$F3 2518
1 TraesCS5D01G227700 chr5D 335086812 335087943 1131 False 1321.0 1321 87.8740 481 1631 1 chr5D.!!$F2 1150
2 TraesCS5D01G227700 chr5D 334969116 334970055 939 True 1290.0 1290 91.7020 716 1639 1 chr5D.!!$R1 923
3 TraesCS5D01G227700 chr5D 334990138 334991102 964 True 1011.0 1011 86.1760 677 1628 1 chr5D.!!$R2 951
4 TraesCS5D01G227700 chr5B 392117841 392119840 1999 False 1303.5 1916 89.6465 1 1984 2 chr5B.!!$F6 1983
5 TraesCS5D01G227700 chr5B 391825830 391826810 980 True 1120.0 1120 87.6890 676 1639 1 chr5B.!!$R1 963
6 TraesCS5D01G227700 chr5B 391866545 391867405 860 False 979.0 979 87.3580 711 1576 1 chr5B.!!$F1 865
7 TraesCS5D01G227700 chr5B 392070521 392071116 595 False 697.0 697 87.6820 1 615 1 chr5B.!!$F2 614
8 TraesCS5D01G227700 chr5B 392077972 392079800 1828 False 422.5 505 89.4370 158 1984 2 chr5B.!!$F5 1826
9 TraesCS5D01G227700 chr5A 436613997 436614928 931 False 1234.0 1234 90.5860 1165 2109 1 chr5A.!!$F2 944
10 TraesCS5D01G227700 chr5A 436328535 436329417 882 True 1118.0 1118 89.6510 746 1625 1 chr5A.!!$R1 879
11 TraesCS5D01G227700 chr5A 436548621 436549501 880 False 994.0 994 87.1650 756 1640 1 chr5A.!!$F1 884
12 TraesCS5D01G227700 chr7B 141008586 141009272 686 True 752.0 752 86.8570 488 1166 1 chr7B.!!$R1 678
13 TraesCS5D01G227700 chr7D 175661747 175662420 673 True 652.0 652 84.4950 481 1166 1 chr7D.!!$R1 685
14 TraesCS5D01G227700 chr7A 177344291 177344802 511 True 521.0 521 85.9650 682 1166 1 chr7A.!!$R1 484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 389 0.039074 CACACACACGGAGAGAGACC 60.039 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2256 2425 0.040058 TCCATTTGCTGTCCTGCCAT 59.96 50.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.909623 AGGTCCTTAATGGTGGTCCG 59.090 55.000 0.00 0.00 36.80 4.79
40 41 0.251916 TTAATGGTGGTCCGCAGAGG 59.748 55.000 4.48 0.00 42.97 3.69
41 42 1.622607 TAATGGTGGTCCGCAGAGGG 61.623 60.000 4.48 0.00 41.52 4.30
42 43 3.924013 ATGGTGGTCCGCAGAGGGA 62.924 63.158 4.48 0.00 41.52 4.20
55 56 0.397254 AGAGGGACGGATGGGTAGTG 60.397 60.000 0.00 0.00 0.00 2.74
70 71 2.308690 GTAGTGCCGGAGTAGATTCCT 58.691 52.381 5.05 0.00 34.96 3.36
78 79 2.428890 CGGAGTAGATTCCTCAGCAACT 59.571 50.000 0.00 0.00 34.96 3.16
79 80 3.118956 CGGAGTAGATTCCTCAGCAACTT 60.119 47.826 0.00 0.00 34.96 2.66
105 106 1.202698 GCTTAATGGAGGCAGACGGAT 60.203 52.381 0.00 0.00 0.00 4.18
121 122 0.596082 GGATGGACCGGTGTTGTTTG 59.404 55.000 14.63 0.00 0.00 2.93
128 129 0.662970 CCGGTGTTGTTTGAATGCGG 60.663 55.000 0.00 0.00 0.00 5.69
139 140 1.136984 GAATGCGGAGAGACGTCGT 59.863 57.895 10.46 0.00 35.98 4.34
145 146 0.179220 CGGAGAGACGTCGTCTTCAC 60.179 60.000 27.57 19.89 43.53 3.18
191 192 3.118454 CCGGCGTCGCTTCAATGT 61.118 61.111 18.11 0.00 34.56 2.71
212 213 0.680280 GGCTCCAGTGAGAGGTCGTA 60.680 60.000 9.72 0.00 41.42 3.43
249 250 4.704833 AATGCGGCGCTGACCAGT 62.705 61.111 33.26 8.56 0.00 4.00
254 255 1.589993 CGGCGCTGACCAGTATCTG 60.590 63.158 11.90 0.00 0.00 2.90
268 269 0.613260 TATCTGGCAGGAAAGCACGT 59.387 50.000 15.73 0.00 35.83 4.49
301 302 0.397564 GGGGTTTTGGTGGTCTACGA 59.602 55.000 0.00 0.00 0.00 3.43
347 348 3.723348 GGACGTCCGCAAAGCACC 61.723 66.667 20.85 0.00 0.00 5.01
348 349 3.723348 GACGTCCGCAAAGCACCC 61.723 66.667 3.51 0.00 0.00 4.61
378 379 2.359850 CCCCCATCCACACACACG 60.360 66.667 0.00 0.00 0.00 4.49
381 382 1.375908 CCCATCCACACACACGGAG 60.376 63.158 0.00 0.00 33.97 4.63
385 386 0.891373 ATCCACACACACGGAGAGAG 59.109 55.000 0.00 0.00 33.97 3.20
386 387 0.179001 TCCACACACACGGAGAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
388 389 0.039074 CACACACACGGAGAGAGACC 60.039 60.000 0.00 0.00 0.00 3.85
389 390 1.179814 ACACACACGGAGAGAGACCC 61.180 60.000 0.00 0.00 0.00 4.46
392 393 0.679505 CACACGGAGAGAGACCCAAA 59.320 55.000 0.00 0.00 0.00 3.28
393 394 0.969894 ACACGGAGAGAGACCCAAAG 59.030 55.000 0.00 0.00 0.00 2.77
394 395 0.390472 CACGGAGAGAGACCCAAAGC 60.390 60.000 0.00 0.00 0.00 3.51
403 404 2.262423 AGACCCAAAGCTTGTGTCTC 57.738 50.000 16.05 7.08 43.44 3.36
410 411 3.311322 CCAAAGCTTGTGTCTCGTTTACA 59.689 43.478 0.00 0.00 0.00 2.41
419 420 5.565695 TGTGTCTCGTTTACAAGAAAAAGC 58.434 37.500 0.00 0.00 0.00 3.51
423 424 1.706597 CGTTTACAAGAAAAAGCCGCG 59.293 47.619 0.00 0.00 0.00 6.46
426 427 0.869730 TACAAGAAAAAGCCGCGTCC 59.130 50.000 4.92 0.00 0.00 4.79
430 431 1.439858 GAAAAAGCCGCGTCCGAAC 60.440 57.895 4.92 0.00 36.29 3.95
437 438 2.259204 CGCGTCCGAACCAACCTA 59.741 61.111 0.00 0.00 36.29 3.08
439 440 2.090524 GCGTCCGAACCAACCTACG 61.091 63.158 0.00 0.00 0.00 3.51
443 444 1.079612 CCGAACCAACCTACGGACC 60.080 63.158 0.00 0.00 46.94 4.46
444 445 1.667151 CGAACCAACCTACGGACCA 59.333 57.895 0.00 0.00 0.00 4.02
452 453 1.819632 CCTACGGACCAATGCAGGC 60.820 63.158 0.00 0.00 0.00 4.85
454 455 0.464373 CTACGGACCAATGCAGGCAT 60.464 55.000 0.00 0.00 38.46 4.40
455 456 0.833949 TACGGACCAATGCAGGCATA 59.166 50.000 7.26 0.00 35.31 3.14
471 472 2.025699 GGCATAGGTGGTTTAAGGGTCA 60.026 50.000 0.00 0.00 0.00 4.02
473 474 4.278310 GCATAGGTGGTTTAAGGGTCAAT 58.722 43.478 0.00 0.00 0.00 2.57
620 668 6.317789 TGAGCTAGAAACAAAACCTGAATG 57.682 37.500 0.00 0.00 0.00 2.67
680 739 0.042731 ATTCTGGAGTCCCCCTTCGA 59.957 55.000 6.74 0.00 0.00 3.71
695 754 4.081642 CCCCTTCGAAACTTGTCTATCTCA 60.082 45.833 0.00 0.00 0.00 3.27
867 963 2.218603 CGGAGCACGGCCTATAAATTT 58.781 47.619 0.00 0.00 39.42 1.82
883 979 2.100605 ATTTTGCCCACTCTCTCGAC 57.899 50.000 0.00 0.00 0.00 4.20
970 1089 2.079158 TGTTGCAGCATCTGTAGCTTC 58.921 47.619 0.00 0.00 41.14 3.86
985 1114 1.003355 CTTCCTTCTGCGCCTTCCA 60.003 57.895 4.18 0.00 0.00 3.53
989 1122 1.078214 CTTCTGCGCCTTCCATCCA 60.078 57.895 4.18 0.00 0.00 3.41
1005 1142 0.546122 TCCACGGCTGATTAATGGCT 59.454 50.000 0.00 0.00 0.00 4.75
1176 1320 4.785453 CCCAAGGCGAGCACCTCC 62.785 72.222 0.00 0.00 39.93 4.30
1500 1646 2.419198 GAGATCATCACCGGCGCT 59.581 61.111 7.64 0.00 0.00 5.92
1670 1830 7.092623 TGGTAATAGTACAAGACATTGGTGGAT 60.093 37.037 2.37 0.00 40.97 3.41
1721 1881 2.991190 GTTCGTGTATATATGGGGTGCG 59.009 50.000 0.00 0.00 0.00 5.34
1746 1906 7.254658 CGTGGTCAGGATTTACATTATGGTTAC 60.255 40.741 0.00 0.00 0.00 2.50
1754 1914 9.797556 GGATTTACATTATGGTTACTTTGGTTC 57.202 33.333 0.00 0.00 0.00 3.62
1874 2041 4.685169 ACGTAAAGGCATCTCAAACATG 57.315 40.909 0.00 0.00 0.00 3.21
1882 2049 1.479323 CATCTCAAACATGCCCCTTGG 59.521 52.381 0.00 0.00 0.00 3.61
1920 2087 6.395780 TGATTTATAAAAGTCAGTGGGGGA 57.604 37.500 1.21 0.00 29.00 4.81
2028 2197 0.250684 TGCAACTTGATCGCCTTGGA 60.251 50.000 0.00 0.00 0.00 3.53
2097 2266 9.953697 GACAAAGTGATAGTCTACTACAATAGG 57.046 37.037 0.00 0.00 0.00 2.57
2109 2278 5.024785 ACTACAATAGGCTTGGTTCTAGC 57.975 43.478 0.00 0.00 37.91 3.42
2110 2279 2.906354 ACAATAGGCTTGGTTCTAGCG 58.094 47.619 0.00 0.00 39.54 4.26
2111 2280 2.500098 ACAATAGGCTTGGTTCTAGCGA 59.500 45.455 0.00 0.00 39.54 4.93
2112 2281 3.055385 ACAATAGGCTTGGTTCTAGCGAA 60.055 43.478 0.00 0.00 39.54 4.70
2113 2282 3.906720 ATAGGCTTGGTTCTAGCGAAA 57.093 42.857 0.00 0.00 39.54 3.46
2114 2283 2.561478 AGGCTTGGTTCTAGCGAAAA 57.439 45.000 0.00 0.00 39.54 2.29
2115 2284 2.152016 AGGCTTGGTTCTAGCGAAAAC 58.848 47.619 0.00 0.00 39.54 2.43
2116 2285 2.152016 GGCTTGGTTCTAGCGAAAACT 58.848 47.619 0.00 0.00 39.54 2.66
2117 2286 2.159824 GGCTTGGTTCTAGCGAAAACTC 59.840 50.000 0.00 0.00 39.54 3.01
2118 2287 2.806244 GCTTGGTTCTAGCGAAAACTCA 59.194 45.455 0.00 0.00 0.00 3.41
2119 2288 3.250040 GCTTGGTTCTAGCGAAAACTCAA 59.750 43.478 0.00 0.00 0.00 3.02
2120 2289 4.083271 GCTTGGTTCTAGCGAAAACTCAAT 60.083 41.667 0.00 0.00 0.00 2.57
2121 2290 5.562890 GCTTGGTTCTAGCGAAAACTCAATT 60.563 40.000 0.00 0.00 0.00 2.32
2122 2291 5.607119 TGGTTCTAGCGAAAACTCAATTC 57.393 39.130 0.00 0.00 0.00 2.17
2123 2292 5.305585 TGGTTCTAGCGAAAACTCAATTCT 58.694 37.500 0.00 0.00 0.00 2.40
2124 2293 5.179368 TGGTTCTAGCGAAAACTCAATTCTG 59.821 40.000 0.00 0.00 0.00 3.02
2125 2294 5.408604 GGTTCTAGCGAAAACTCAATTCTGA 59.591 40.000 0.00 0.00 0.00 3.27
2133 2302 2.791170 CTCAATTCTGAGCCCAGGC 58.209 57.895 0.00 0.00 42.66 4.85
2143 2312 2.827642 GCCCAGGCTCAGATGCAC 60.828 66.667 0.08 0.00 38.26 4.57
2144 2313 2.124403 CCCAGGCTCAGATGCACC 60.124 66.667 0.00 0.00 34.04 5.01
2145 2314 2.677289 CCCAGGCTCAGATGCACCT 61.677 63.158 0.00 0.00 34.04 4.00
2146 2315 4.220413 CAGGCTCAGATGCACCTG 57.780 61.111 0.00 0.00 43.45 4.00
2147 2316 4.142045 AGGCTCAGATGCACCTGA 57.858 55.556 11.19 11.19 40.57 3.86
2148 2317 2.617736 AGGCTCAGATGCACCTGAT 58.382 52.632 12.29 0.00 41.79 2.90
2149 2318 1.798626 AGGCTCAGATGCACCTGATA 58.201 50.000 12.29 0.00 41.79 2.15
2150 2319 2.336891 AGGCTCAGATGCACCTGATAT 58.663 47.619 12.29 0.00 41.79 1.63
2151 2320 2.302445 AGGCTCAGATGCACCTGATATC 59.698 50.000 12.29 4.32 41.79 1.63
2152 2321 2.038164 GGCTCAGATGCACCTGATATCA 59.962 50.000 12.29 5.07 41.79 2.15
2153 2322 3.307550 GGCTCAGATGCACCTGATATCAT 60.308 47.826 12.29 0.00 41.79 2.45
2154 2323 3.933955 GCTCAGATGCACCTGATATCATC 59.066 47.826 12.29 0.00 41.79 2.92
2155 2324 4.562963 GCTCAGATGCACCTGATATCATCA 60.563 45.833 12.29 3.05 41.79 3.07
2156 2325 4.891260 TCAGATGCACCTGATATCATCAC 58.109 43.478 6.70 0.00 38.18 3.06
2157 2326 4.001652 CAGATGCACCTGATATCATCACC 58.998 47.826 0.00 0.00 38.15 4.02
2158 2327 2.936919 TGCACCTGATATCATCACCC 57.063 50.000 5.72 0.00 35.06 4.61
2159 2328 2.411583 TGCACCTGATATCATCACCCT 58.588 47.619 5.72 0.00 35.06 4.34
2160 2329 2.779430 TGCACCTGATATCATCACCCTT 59.221 45.455 5.72 0.00 35.06 3.95
2161 2330 3.181451 TGCACCTGATATCATCACCCTTC 60.181 47.826 5.72 0.00 35.06 3.46
2162 2331 3.181451 GCACCTGATATCATCACCCTTCA 60.181 47.826 5.72 0.00 35.06 3.02
2163 2332 4.506271 GCACCTGATATCATCACCCTTCAT 60.506 45.833 5.72 0.00 35.06 2.57
2164 2333 5.001874 CACCTGATATCATCACCCTTCATG 58.998 45.833 5.72 0.00 35.06 3.07
2165 2334 4.662179 ACCTGATATCATCACCCTTCATGT 59.338 41.667 5.72 0.00 35.06 3.21
2166 2335 5.001874 CCTGATATCATCACCCTTCATGTG 58.998 45.833 5.72 0.00 35.06 3.21
2167 2336 4.392047 TGATATCATCACCCTTCATGTGC 58.608 43.478 0.00 0.00 33.59 4.57
2168 2337 2.812836 ATCATCACCCTTCATGTGCA 57.187 45.000 0.00 0.00 33.71 4.57
2169 2338 2.812836 TCATCACCCTTCATGTGCAT 57.187 45.000 0.00 0.00 33.71 3.96
2170 2339 2.371306 TCATCACCCTTCATGTGCATG 58.629 47.619 5.86 5.86 40.09 4.06
2171 2340 1.407618 CATCACCCTTCATGTGCATGG 59.592 52.381 11.68 0.00 39.24 3.66
2172 2341 0.323633 TCACCCTTCATGTGCATGGG 60.324 55.000 11.68 8.12 43.26 4.00
2173 2342 1.000739 ACCCTTCATGTGCATGGGG 59.999 57.895 18.69 18.69 42.51 4.96
2174 2343 1.307309 CCCTTCATGTGCATGGGGA 59.693 57.895 16.60 3.35 40.59 4.81
2175 2344 0.105862 CCCTTCATGTGCATGGGGAT 60.106 55.000 16.60 0.00 40.59 3.85
2176 2345 1.690209 CCCTTCATGTGCATGGGGATT 60.690 52.381 16.60 0.00 40.59 3.01
2177 2346 2.112998 CCTTCATGTGCATGGGGATTT 58.887 47.619 11.68 0.00 39.24 2.17
2178 2347 2.159014 CCTTCATGTGCATGGGGATTTG 60.159 50.000 11.68 0.00 39.24 2.32
2179 2348 1.487300 TCATGTGCATGGGGATTTGG 58.513 50.000 11.68 0.00 39.24 3.28
2180 2349 0.466543 CATGTGCATGGGGATTTGGG 59.533 55.000 4.35 0.00 35.24 4.12
2181 2350 1.339644 ATGTGCATGGGGATTTGGGC 61.340 55.000 0.00 0.00 0.00 5.36
2182 2351 2.365370 TGCATGGGGATTTGGGCC 60.365 61.111 0.00 0.00 0.00 5.80
2183 2352 2.041612 GCATGGGGATTTGGGCCT 60.042 61.111 4.53 0.00 0.00 5.19
2184 2353 1.690283 GCATGGGGATTTGGGCCTT 60.690 57.895 4.53 0.00 0.00 4.35
2185 2354 1.273986 GCATGGGGATTTGGGCCTTT 61.274 55.000 4.53 0.00 0.00 3.11
2186 2355 1.969240 GCATGGGGATTTGGGCCTTTA 60.969 52.381 4.53 0.00 0.00 1.85
2187 2356 2.041701 CATGGGGATTTGGGCCTTTAG 58.958 52.381 4.53 0.00 0.00 1.85
2188 2357 1.089123 TGGGGATTTGGGCCTTTAGT 58.911 50.000 4.53 0.00 0.00 2.24
2189 2358 2.289467 TGGGGATTTGGGCCTTTAGTA 58.711 47.619 4.53 0.00 0.00 1.82
2190 2359 2.243736 TGGGGATTTGGGCCTTTAGTAG 59.756 50.000 4.53 0.00 0.00 2.57
2191 2360 2.243994 GGGGATTTGGGCCTTTAGTAGT 59.756 50.000 4.53 0.00 0.00 2.73
2192 2361 3.460712 GGGGATTTGGGCCTTTAGTAGTA 59.539 47.826 4.53 0.00 0.00 1.82
2193 2362 4.105858 GGGGATTTGGGCCTTTAGTAGTAT 59.894 45.833 4.53 0.00 0.00 2.12
2194 2363 5.399842 GGGGATTTGGGCCTTTAGTAGTATT 60.400 44.000 4.53 0.00 0.00 1.89
2195 2364 5.768662 GGGATTTGGGCCTTTAGTAGTATTC 59.231 44.000 4.53 0.00 0.00 1.75
2196 2365 6.410504 GGGATTTGGGCCTTTAGTAGTATTCT 60.411 42.308 4.53 0.00 0.00 2.40
2197 2366 6.486993 GGATTTGGGCCTTTAGTAGTATTCTG 59.513 42.308 4.53 0.00 0.00 3.02
2198 2367 5.367945 TTGGGCCTTTAGTAGTATTCTGG 57.632 43.478 4.53 0.00 0.00 3.86
2199 2368 4.368067 TGGGCCTTTAGTAGTATTCTGGT 58.632 43.478 4.53 0.00 0.00 4.00
2200 2369 4.163458 TGGGCCTTTAGTAGTATTCTGGTG 59.837 45.833 4.53 0.00 0.00 4.17
2201 2370 4.163649 GGGCCTTTAGTAGTATTCTGGTGT 59.836 45.833 0.84 0.00 0.00 4.16
2202 2371 5.116882 GGCCTTTAGTAGTATTCTGGTGTG 58.883 45.833 0.00 0.00 0.00 3.82
2203 2372 5.338137 GGCCTTTAGTAGTATTCTGGTGTGT 60.338 44.000 0.00 0.00 0.00 3.72
2204 2373 6.127253 GGCCTTTAGTAGTATTCTGGTGTGTA 60.127 42.308 0.00 0.00 0.00 2.90
2205 2374 7.418712 GGCCTTTAGTAGTATTCTGGTGTGTAT 60.419 40.741 0.00 0.00 0.00 2.29
2206 2375 7.438459 GCCTTTAGTAGTATTCTGGTGTGTATG 59.562 40.741 0.00 0.00 0.00 2.39
2207 2376 8.475639 CCTTTAGTAGTATTCTGGTGTGTATGT 58.524 37.037 0.00 0.00 0.00 2.29
2210 2379 7.040473 AGTAGTATTCTGGTGTGTATGTAGC 57.960 40.000 0.00 0.00 0.00 3.58
2211 2380 6.834451 AGTAGTATTCTGGTGTGTATGTAGCT 59.166 38.462 0.00 0.00 0.00 3.32
2212 2381 6.546428 AGTATTCTGGTGTGTATGTAGCTT 57.454 37.500 0.00 0.00 0.00 3.74
2213 2382 7.655521 AGTATTCTGGTGTGTATGTAGCTTA 57.344 36.000 0.00 0.00 0.00 3.09
2214 2383 8.251383 AGTATTCTGGTGTGTATGTAGCTTAT 57.749 34.615 0.00 0.00 0.00 1.73
2215 2384 9.363401 AGTATTCTGGTGTGTATGTAGCTTATA 57.637 33.333 0.00 0.00 0.00 0.98
2218 2387 9.712305 ATTCTGGTGTGTATGTAGCTTATATTC 57.288 33.333 0.00 0.00 0.00 1.75
2219 2388 8.478775 TCTGGTGTGTATGTAGCTTATATTCT 57.521 34.615 0.00 0.00 0.00 2.40
2220 2389 9.582648 TCTGGTGTGTATGTAGCTTATATTCTA 57.417 33.333 0.00 0.00 0.00 2.10
2241 2410 9.807921 ATTCTAAAAGAAAAATAGAGTGGGTCA 57.192 29.630 0.00 0.00 37.82 4.02
2242 2411 9.807921 TTCTAAAAGAAAAATAGAGTGGGTCAT 57.192 29.630 0.00 0.00 29.99 3.06
2243 2412 9.231297 TCTAAAAGAAAAATAGAGTGGGTCATG 57.769 33.333 0.00 0.00 0.00 3.07
2244 2413 5.904362 AAGAAAAATAGAGTGGGTCATGC 57.096 39.130 0.00 0.00 0.00 4.06
2245 2414 4.922206 AGAAAAATAGAGTGGGTCATGCA 58.078 39.130 0.00 0.00 0.00 3.96
2246 2415 4.946157 AGAAAAATAGAGTGGGTCATGCAG 59.054 41.667 0.00 0.00 0.00 4.41
2247 2416 4.307032 AAAATAGAGTGGGTCATGCAGT 57.693 40.909 0.00 0.00 0.00 4.40
2248 2417 3.550437 AATAGAGTGGGTCATGCAGTC 57.450 47.619 0.00 0.00 0.00 3.51
2249 2418 2.238084 TAGAGTGGGTCATGCAGTCT 57.762 50.000 12.14 12.14 33.66 3.24
2250 2419 1.356124 AGAGTGGGTCATGCAGTCTT 58.644 50.000 3.97 0.00 0.00 3.01
2251 2420 1.701847 AGAGTGGGTCATGCAGTCTTT 59.298 47.619 3.97 0.00 0.00 2.52
2252 2421 2.906389 AGAGTGGGTCATGCAGTCTTTA 59.094 45.455 3.97 0.00 0.00 1.85
2253 2422 3.521126 AGAGTGGGTCATGCAGTCTTTAT 59.479 43.478 3.97 0.00 0.00 1.40
2254 2423 3.614092 AGTGGGTCATGCAGTCTTTATG 58.386 45.455 0.00 0.00 0.00 1.90
2255 2424 3.264193 AGTGGGTCATGCAGTCTTTATGA 59.736 43.478 0.00 0.00 0.00 2.15
2256 2425 4.009675 GTGGGTCATGCAGTCTTTATGAA 58.990 43.478 0.00 0.00 33.10 2.57
2257 2426 4.641989 GTGGGTCATGCAGTCTTTATGAAT 59.358 41.667 0.00 0.00 33.10 2.57
2258 2427 4.641541 TGGGTCATGCAGTCTTTATGAATG 59.358 41.667 0.00 0.00 42.97 2.67
2259 2428 4.037208 GGGTCATGCAGTCTTTATGAATGG 59.963 45.833 0.00 0.00 40.70 3.16
2260 2429 4.498682 GGTCATGCAGTCTTTATGAATGGC 60.499 45.833 0.00 0.00 40.70 4.40
2261 2430 4.096833 GTCATGCAGTCTTTATGAATGGCA 59.903 41.667 0.00 0.00 38.08 4.92
2262 2431 4.337274 TCATGCAGTCTTTATGAATGGCAG 59.663 41.667 0.00 0.00 40.70 4.85
2263 2432 3.018856 TGCAGTCTTTATGAATGGCAGG 58.981 45.455 0.00 0.00 40.70 4.85
2264 2433 3.282021 GCAGTCTTTATGAATGGCAGGA 58.718 45.455 0.00 0.00 40.70 3.86
2265 2434 3.065925 GCAGTCTTTATGAATGGCAGGAC 59.934 47.826 0.00 0.00 40.70 3.85
2266 2435 4.264253 CAGTCTTTATGAATGGCAGGACA 58.736 43.478 0.00 0.00 37.14 4.02
2267 2436 4.334759 CAGTCTTTATGAATGGCAGGACAG 59.665 45.833 0.00 0.00 37.14 3.51
2268 2437 3.065925 GTCTTTATGAATGGCAGGACAGC 59.934 47.826 0.00 0.00 0.00 4.40
2269 2438 2.804986 TTATGAATGGCAGGACAGCA 57.195 45.000 0.00 0.00 35.83 4.41
2270 2439 2.804986 TATGAATGGCAGGACAGCAA 57.195 45.000 0.00 0.00 35.83 3.91
2271 2440 1.927487 ATGAATGGCAGGACAGCAAA 58.073 45.000 0.00 0.00 35.83 3.68
2272 2441 1.927487 TGAATGGCAGGACAGCAAAT 58.073 45.000 0.00 0.00 35.83 2.32
2273 2442 1.546923 TGAATGGCAGGACAGCAAATG 59.453 47.619 0.00 0.00 35.83 2.32
2274 2443 0.899720 AATGGCAGGACAGCAAATGG 59.100 50.000 0.00 0.00 35.83 3.16
2275 2444 0.040058 ATGGCAGGACAGCAAATGGA 59.960 50.000 0.00 0.00 35.83 3.41
2276 2445 0.040058 TGGCAGGACAGCAAATGGAT 59.960 50.000 0.00 0.00 35.83 3.41
2277 2446 1.188863 GGCAGGACAGCAAATGGATT 58.811 50.000 0.00 0.00 35.83 3.01
2278 2447 1.135721 GGCAGGACAGCAAATGGATTC 59.864 52.381 0.00 0.00 35.83 2.52
2279 2448 1.820519 GCAGGACAGCAAATGGATTCA 59.179 47.619 0.00 0.00 0.00 2.57
2280 2449 2.231964 GCAGGACAGCAAATGGATTCAA 59.768 45.455 0.00 0.00 0.00 2.69
2281 2450 3.841643 CAGGACAGCAAATGGATTCAAC 58.158 45.455 0.00 0.00 0.00 3.18
2282 2451 2.489329 AGGACAGCAAATGGATTCAACG 59.511 45.455 0.00 0.00 0.00 4.10
2283 2452 2.415893 GGACAGCAAATGGATTCAACGG 60.416 50.000 0.00 0.00 0.00 4.44
2284 2453 1.067635 ACAGCAAATGGATTCAACGGC 60.068 47.619 0.00 0.00 0.00 5.68
2285 2454 1.203052 CAGCAAATGGATTCAACGGCT 59.797 47.619 0.00 0.00 0.00 5.52
2286 2455 1.474077 AGCAAATGGATTCAACGGCTC 59.526 47.619 0.00 0.00 0.00 4.70
2287 2456 1.202114 GCAAATGGATTCAACGGCTCA 59.798 47.619 0.00 0.00 0.00 4.26
2288 2457 2.733227 GCAAATGGATTCAACGGCTCAG 60.733 50.000 0.00 0.00 0.00 3.35
2289 2458 1.755179 AATGGATTCAACGGCTCAGG 58.245 50.000 0.00 0.00 0.00 3.86
2290 2459 0.749454 ATGGATTCAACGGCTCAGGC 60.749 55.000 0.00 0.00 37.82 4.85
2300 2469 2.759795 GCTCAGGCCTCCTTTGGT 59.240 61.111 0.00 0.00 0.00 3.67
2301 2470 1.075659 GCTCAGGCCTCCTTTGGTT 59.924 57.895 0.00 0.00 0.00 3.67
2302 2471 0.540597 GCTCAGGCCTCCTTTGGTTT 60.541 55.000 0.00 0.00 0.00 3.27
2303 2472 1.271926 GCTCAGGCCTCCTTTGGTTTA 60.272 52.381 0.00 0.00 0.00 2.01
2304 2473 2.716217 CTCAGGCCTCCTTTGGTTTAG 58.284 52.381 0.00 0.00 0.00 1.85
2305 2474 2.305927 CTCAGGCCTCCTTTGGTTTAGA 59.694 50.000 0.00 0.00 0.00 2.10
2306 2475 2.305927 TCAGGCCTCCTTTGGTTTAGAG 59.694 50.000 0.00 0.00 0.00 2.43
2314 2483 6.749923 CTCCTTTGGTTTAGAGGAATCTTG 57.250 41.667 0.00 0.00 39.00 3.02
2315 2484 6.200878 TCCTTTGGTTTAGAGGAATCTTGT 57.799 37.500 0.00 0.00 36.67 3.16
2316 2485 7.324388 TCCTTTGGTTTAGAGGAATCTTGTA 57.676 36.000 0.00 0.00 36.67 2.41
2317 2486 7.394816 TCCTTTGGTTTAGAGGAATCTTGTAG 58.605 38.462 0.00 0.00 36.67 2.74
2318 2487 6.599638 CCTTTGGTTTAGAGGAATCTTGTAGG 59.400 42.308 0.00 0.00 32.11 3.18
2319 2488 6.945636 TTGGTTTAGAGGAATCTTGTAGGA 57.054 37.500 0.00 0.00 0.00 2.94
2320 2489 6.945636 TGGTTTAGAGGAATCTTGTAGGAA 57.054 37.500 0.00 0.00 0.00 3.36
2321 2490 7.510675 TGGTTTAGAGGAATCTTGTAGGAAT 57.489 36.000 0.00 0.00 0.00 3.01
2322 2491 7.928873 TGGTTTAGAGGAATCTTGTAGGAATT 58.071 34.615 0.00 0.00 0.00 2.17
2323 2492 8.390921 TGGTTTAGAGGAATCTTGTAGGAATTT 58.609 33.333 0.00 0.00 0.00 1.82
2324 2493 8.894731 GGTTTAGAGGAATCTTGTAGGAATTTC 58.105 37.037 0.00 0.00 0.00 2.17
2325 2494 9.449719 GTTTAGAGGAATCTTGTAGGAATTTCA 57.550 33.333 0.00 0.00 0.00 2.69
2329 2498 8.435982 AGAGGAATCTTGTAGGAATTTCATAGG 58.564 37.037 0.00 0.00 0.00 2.57
2330 2499 8.337118 AGGAATCTTGTAGGAATTTCATAGGA 57.663 34.615 0.00 0.00 0.00 2.94
2331 2500 8.953665 AGGAATCTTGTAGGAATTTCATAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
2335 2504 9.621239 ATCTTGTAGGAATTTCATAGGATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
2336 2505 9.621239 TCTTGTAGGAATTTCATAGGATAGGAT 57.379 33.333 0.00 0.00 28.27 3.24
2368 2537 8.893219 AGAAAAATTTTCTTTAGAGCCCTTTG 57.107 30.769 14.63 0.00 0.00 2.77
2369 2538 7.442364 AGAAAAATTTTCTTTAGAGCCCTTTGC 59.558 33.333 14.63 0.00 41.71 3.68
2382 2551 4.590850 GCCCTTTGCTTTATAGGAATGG 57.409 45.455 10.79 10.79 42.85 3.16
2383 2552 4.215109 GCCCTTTGCTTTATAGGAATGGA 58.785 43.478 16.75 0.00 44.70 3.41
2384 2553 4.649218 GCCCTTTGCTTTATAGGAATGGAA 59.351 41.667 16.75 0.00 44.70 3.53
2385 2554 5.305386 GCCCTTTGCTTTATAGGAATGGAAT 59.695 40.000 16.75 0.00 44.70 3.01
2386 2555 6.517362 GCCCTTTGCTTTATAGGAATGGAATC 60.517 42.308 16.75 6.01 44.70 2.52
2387 2556 6.550854 CCCTTTGCTTTATAGGAATGGAATCA 59.449 38.462 16.75 0.00 44.70 2.57
2388 2557 7.234166 CCCTTTGCTTTATAGGAATGGAATCAT 59.766 37.037 16.75 0.00 44.70 2.45
2389 2558 9.300681 CCTTTGCTTTATAGGAATGGAATCATA 57.699 33.333 11.90 0.00 44.70 2.15
2401 2570 7.059156 GGAATGGAATCATATTCCTATGGAGG 58.941 42.308 17.27 0.00 45.66 4.30
2402 2571 6.587560 ATGGAATCATATTCCTATGGAGGG 57.412 41.667 17.27 0.00 43.94 4.30
2403 2572 5.675077 TGGAATCATATTCCTATGGAGGGA 58.325 41.667 17.27 0.00 43.94 4.20
2404 2573 6.282576 TGGAATCATATTCCTATGGAGGGAT 58.717 40.000 17.27 0.00 44.23 3.85
2405 2574 6.741922 TGGAATCATATTCCTATGGAGGGATT 59.258 38.462 17.27 0.00 37.92 3.01
2406 2575 7.092264 TGGAATCATATTCCTATGGAGGGATTC 60.092 40.741 17.27 15.27 37.92 2.52
2407 2576 7.128573 GGAATCATATTCCTATGGAGGGATTCT 59.871 40.741 10.76 0.00 37.92 2.40
2408 2577 8.474062 AATCATATTCCTATGGAGGGATTCTT 57.526 34.615 0.00 0.00 37.92 2.52
2409 2578 7.502060 TCATATTCCTATGGAGGGATTCTTC 57.498 40.000 0.00 0.00 37.92 2.87
2410 2579 6.445139 TCATATTCCTATGGAGGGATTCTTCC 59.555 42.308 0.00 0.00 37.92 3.46
2411 2580 4.302004 TTCCTATGGAGGGATTCTTCCT 57.698 45.455 3.42 0.00 43.94 3.36
2412 2581 5.434003 TTCCTATGGAGGGATTCTTCCTA 57.566 43.478 3.42 0.00 43.94 2.94
2413 2582 5.640127 TCCTATGGAGGGATTCTTCCTAT 57.360 43.478 3.42 0.00 43.94 2.57
2414 2583 5.594777 TCCTATGGAGGGATTCTTCCTATC 58.405 45.833 3.42 0.00 43.94 2.08
2415 2584 4.719273 CCTATGGAGGGATTCTTCCTATCC 59.281 50.000 3.42 8.83 43.08 2.59
2416 2585 4.516953 ATGGAGGGATTCTTCCTATCCT 57.483 45.455 3.42 0.00 43.13 3.24
2417 2586 3.863086 TGGAGGGATTCTTCCTATCCTC 58.137 50.000 3.42 0.00 43.13 3.71
2418 2587 3.178046 GGAGGGATTCTTCCTATCCTCC 58.822 54.545 10.03 10.03 41.22 4.30
2419 2588 3.440154 GGAGGGATTCTTCCTATCCTCCA 60.440 52.174 18.26 0.00 41.22 3.86
2420 2589 3.580895 GAGGGATTCTTCCTATCCTCCAC 59.419 52.174 0.00 0.00 42.20 4.02
2421 2590 3.051032 AGGGATTCTTCCTATCCTCCACA 60.051 47.826 0.00 0.00 42.20 4.17
2422 2591 3.913163 GGGATTCTTCCTATCCTCCACAT 59.087 47.826 0.00 0.00 42.20 3.21
2423 2592 4.352298 GGGATTCTTCCTATCCTCCACATT 59.648 45.833 0.00 0.00 42.20 2.71
2424 2593 5.163045 GGGATTCTTCCTATCCTCCACATTT 60.163 44.000 0.00 0.00 42.20 2.32
2425 2594 6.000840 GGATTCTTCCTATCCTCCACATTTC 58.999 44.000 0.00 0.00 38.81 2.17
2426 2595 6.409695 GGATTCTTCCTATCCTCCACATTTCA 60.410 42.308 0.00 0.00 38.81 2.69
2427 2596 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
2428 2597 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
2429 2598 7.690454 TCTTCCTATCCTCCACATTTCATAA 57.310 36.000 0.00 0.00 0.00 1.90
2430 2599 7.739825 TCTTCCTATCCTCCACATTTCATAAG 58.260 38.462 0.00 0.00 0.00 1.73
2431 2600 7.568738 TCTTCCTATCCTCCACATTTCATAAGA 59.431 37.037 0.00 0.00 0.00 2.10
2432 2601 7.690454 TCCTATCCTCCACATTTCATAAGAA 57.310 36.000 0.00 0.00 0.00 2.52
2433 2602 8.101309 TCCTATCCTCCACATTTCATAAGAAA 57.899 34.615 0.00 0.00 46.90 2.52
2434 2603 8.556589 TCCTATCCTCCACATTTCATAAGAAAA 58.443 33.333 0.00 0.00 46.06 2.29
2435 2604 9.359653 CCTATCCTCCACATTTCATAAGAAAAT 57.640 33.333 0.00 0.00 46.06 1.82
2451 2620 9.899226 CATAAGAAAATAAACATTAGCCTAGCC 57.101 33.333 0.00 0.00 0.00 3.93
2452 2621 9.868160 ATAAGAAAATAAACATTAGCCTAGCCT 57.132 29.630 0.00 0.00 0.00 4.58
2454 2623 8.910351 AGAAAATAAACATTAGCCTAGCCTAG 57.090 34.615 0.00 0.00 0.00 3.02
2455 2624 8.714906 AGAAAATAAACATTAGCCTAGCCTAGA 58.285 33.333 0.00 0.00 0.00 2.43
2456 2625 8.678593 AAAATAAACATTAGCCTAGCCTAGAC 57.321 34.615 0.00 0.00 0.00 2.59
2457 2626 7.619512 AATAAACATTAGCCTAGCCTAGACT 57.380 36.000 0.00 0.00 0.00 3.24
2458 2627 5.538849 AAACATTAGCCTAGCCTAGACTC 57.461 43.478 0.00 0.00 0.00 3.36
2459 2628 4.186077 ACATTAGCCTAGCCTAGACTCA 57.814 45.455 0.00 0.00 0.00 3.41
2460 2629 4.547671 ACATTAGCCTAGCCTAGACTCAA 58.452 43.478 0.00 0.00 0.00 3.02
2461 2630 5.151454 ACATTAGCCTAGCCTAGACTCAAT 58.849 41.667 0.00 0.00 0.00 2.57
2462 2631 5.011533 ACATTAGCCTAGCCTAGACTCAATG 59.988 44.000 0.00 7.70 0.00 2.82
2463 2632 2.324541 AGCCTAGCCTAGACTCAATGG 58.675 52.381 0.00 0.00 0.00 3.16
2464 2633 2.091055 AGCCTAGCCTAGACTCAATGGA 60.091 50.000 0.00 0.00 0.00 3.41
2465 2634 2.700897 GCCTAGCCTAGACTCAATGGAA 59.299 50.000 0.00 0.00 0.00 3.53
2466 2635 3.134804 GCCTAGCCTAGACTCAATGGAAA 59.865 47.826 0.00 0.00 0.00 3.13
2467 2636 4.384208 GCCTAGCCTAGACTCAATGGAAAA 60.384 45.833 0.00 0.00 0.00 2.29
2468 2637 5.745227 CCTAGCCTAGACTCAATGGAAAAA 58.255 41.667 0.00 0.00 0.00 1.94
2491 2660 7.534723 AAATCCTATGATGTGAATCAATGGG 57.465 36.000 9.14 0.00 33.83 4.00
2492 2661 4.401022 TCCTATGATGTGAATCAATGGGC 58.599 43.478 9.14 0.00 33.83 5.36
2493 2662 4.141205 TCCTATGATGTGAATCAATGGGCA 60.141 41.667 9.14 0.00 33.83 5.36
2494 2663 4.770531 CCTATGATGTGAATCAATGGGCAT 59.229 41.667 0.00 0.00 33.83 4.40
2495 2664 4.866508 ATGATGTGAATCAATGGGCATC 57.133 40.909 4.45 4.45 33.83 3.91
2496 2665 3.905968 TGATGTGAATCAATGGGCATCT 58.094 40.909 10.68 0.00 35.22 2.90
2497 2666 3.887110 TGATGTGAATCAATGGGCATCTC 59.113 43.478 10.68 0.00 35.22 2.75
2498 2667 2.658285 TGTGAATCAATGGGCATCTCC 58.342 47.619 0.00 0.00 0.00 3.71
2499 2668 1.605710 GTGAATCAATGGGCATCTCCG 59.394 52.381 0.00 0.00 34.94 4.63
2500 2669 1.212688 TGAATCAATGGGCATCTCCGT 59.787 47.619 0.00 0.00 34.94 4.69
2501 2670 2.301346 GAATCAATGGGCATCTCCGTT 58.699 47.619 0.00 0.00 36.53 4.44
2502 2671 1.972872 ATCAATGGGCATCTCCGTTC 58.027 50.000 0.00 0.00 34.03 3.95
2503 2672 0.107214 TCAATGGGCATCTCCGTTCC 60.107 55.000 0.00 0.00 34.03 3.62
2504 2673 0.107017 CAATGGGCATCTCCGTTCCT 60.107 55.000 0.00 0.00 34.03 3.36
2505 2674 1.140852 CAATGGGCATCTCCGTTCCTA 59.859 52.381 0.00 0.00 34.03 2.94
2506 2675 1.734655 ATGGGCATCTCCGTTCCTAT 58.265 50.000 0.00 0.00 34.94 2.57
2507 2676 1.507140 TGGGCATCTCCGTTCCTATT 58.493 50.000 0.00 0.00 34.94 1.73
2508 2677 1.416401 TGGGCATCTCCGTTCCTATTC 59.584 52.381 0.00 0.00 34.94 1.75
2509 2678 1.270893 GGGCATCTCCGTTCCTATTCC 60.271 57.143 0.00 0.00 34.94 3.01
2510 2679 1.694696 GGCATCTCCGTTCCTATTCCT 59.305 52.381 0.00 0.00 0.00 3.36
2511 2680 2.897969 GGCATCTCCGTTCCTATTCCTA 59.102 50.000 0.00 0.00 0.00 2.94
2512 2681 3.515901 GGCATCTCCGTTCCTATTCCTAT 59.484 47.826 0.00 0.00 0.00 2.57
2513 2682 4.020128 GGCATCTCCGTTCCTATTCCTATT 60.020 45.833 0.00 0.00 0.00 1.73
2514 2683 5.172205 GCATCTCCGTTCCTATTCCTATTC 58.828 45.833 0.00 0.00 0.00 1.75
2515 2684 5.279506 GCATCTCCGTTCCTATTCCTATTCA 60.280 44.000 0.00 0.00 0.00 2.57
2516 2685 5.786264 TCTCCGTTCCTATTCCTATTCAC 57.214 43.478 0.00 0.00 0.00 3.18
2517 2686 5.205821 TCTCCGTTCCTATTCCTATTCACA 58.794 41.667 0.00 0.00 0.00 3.58
2518 2687 5.302059 TCTCCGTTCCTATTCCTATTCACAG 59.698 44.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.749334 CTACCCATCCGTCCCTCTGC 61.749 65.000 0.00 0.00 0.00 4.26
40 41 2.504519 GGCACTACCCATCCGTCC 59.495 66.667 0.00 0.00 0.00 4.79
41 42 2.106332 CGGCACTACCCATCCGTC 59.894 66.667 0.00 0.00 37.33 4.79
42 43 3.467226 CCGGCACTACCCATCCGT 61.467 66.667 0.00 0.00 40.23 4.69
43 44 3.151710 TCCGGCACTACCCATCCG 61.152 66.667 0.00 0.00 41.41 4.18
55 56 0.032815 GCTGAGGAATCTACTCCGGC 59.967 60.000 0.00 0.00 40.75 6.13
70 71 1.304254 TAAGCGCACAAAGTTGCTGA 58.696 45.000 11.47 0.00 40.62 4.26
78 79 0.525761 GCCTCCATTAAGCGCACAAA 59.474 50.000 11.47 0.00 0.00 2.83
79 80 0.607762 TGCCTCCATTAAGCGCACAA 60.608 50.000 11.47 2.52 0.00 3.33
105 106 1.678627 CATTCAAACAACACCGGTCCA 59.321 47.619 2.59 0.00 0.00 4.02
116 117 1.270094 ACGTCTCTCCGCATTCAAACA 60.270 47.619 0.00 0.00 0.00 2.83
117 118 1.390463 GACGTCTCTCCGCATTCAAAC 59.610 52.381 8.70 0.00 0.00 2.93
121 122 0.862283 GACGACGTCTCTCCGCATTC 60.862 60.000 20.52 0.00 0.00 2.67
128 129 0.179220 CGGTGAAGACGACGTCTCTC 60.179 60.000 29.31 25.09 42.59 3.20
173 174 4.520846 CATTGAAGCGACGCCGGC 62.521 66.667 19.07 19.07 36.06 6.13
191 192 1.679305 GACCTCTCACTGGAGCCGA 60.679 63.158 0.00 0.00 41.13 5.54
249 250 0.613260 ACGTGCTTTCCTGCCAGATA 59.387 50.000 0.00 0.00 0.00 1.98
254 255 2.741486 TACCCACGTGCTTTCCTGCC 62.741 60.000 10.91 0.00 0.00 4.85
257 258 0.036306 CCTTACCCACGTGCTTTCCT 59.964 55.000 10.91 0.00 0.00 3.36
268 269 1.768231 AACCCCTCCTCCCTTACCCA 61.768 60.000 0.00 0.00 0.00 4.51
301 302 1.515954 CACGCCCGTTCCTGACTAT 59.484 57.895 0.00 0.00 0.00 2.12
330 331 3.723348 GGTGCTTTGCGGACGTCC 61.723 66.667 25.28 25.28 34.33 4.79
363 364 1.375908 CTCCGTGTGTGTGGATGGG 60.376 63.158 0.00 0.00 32.83 4.00
366 367 0.891373 CTCTCTCCGTGTGTGTGGAT 59.109 55.000 0.00 0.00 32.83 3.41
367 368 0.179001 TCTCTCTCCGTGTGTGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
378 379 1.349357 ACAAGCTTTGGGTCTCTCTCC 59.651 52.381 0.00 0.00 34.12 3.71
381 382 2.262423 ACACAAGCTTTGGGTCTCTC 57.738 50.000 0.00 0.00 46.19 3.20
388 389 3.311322 TGTAAACGAGACACAAGCTTTGG 59.689 43.478 0.00 0.00 34.12 3.28
389 390 4.530094 TGTAAACGAGACACAAGCTTTG 57.470 40.909 0.00 1.45 0.00 2.77
392 393 4.054780 TCTTGTAAACGAGACACAAGCT 57.945 40.909 14.60 0.00 45.60 3.74
393 394 4.789095 TTCTTGTAAACGAGACACAAGC 57.211 40.909 14.60 0.00 45.60 4.01
394 395 6.194692 GCTTTTTCTTGTAAACGAGACACAAG 59.805 38.462 13.76 13.76 46.76 3.16
402 403 2.600320 CGCGGCTTTTTCTTGTAAACGA 60.600 45.455 0.00 0.00 0.00 3.85
403 404 1.706597 CGCGGCTTTTTCTTGTAAACG 59.293 47.619 0.00 0.00 0.00 3.60
410 411 1.161563 TTCGGACGCGGCTTTTTCTT 61.162 50.000 13.91 0.00 0.00 2.52
419 420 3.285523 TAGGTTGGTTCGGACGCGG 62.286 63.158 12.47 0.00 0.00 6.46
437 438 0.464373 CTATGCCTGCATTGGTCCGT 60.464 55.000 10.27 0.00 37.82 4.69
439 440 2.724520 CCTATGCCTGCATTGGTCC 58.275 57.895 20.08 0.00 41.91 4.46
443 444 1.477553 AACCACCTATGCCTGCATTG 58.522 50.000 10.27 8.22 37.82 2.82
444 445 2.236489 AAACCACCTATGCCTGCATT 57.764 45.000 10.27 0.00 37.82 3.56
452 453 5.261216 ACATTGACCCTTAAACCACCTATG 58.739 41.667 0.00 0.00 0.00 2.23
454 455 5.074115 CAACATTGACCCTTAAACCACCTA 58.926 41.667 0.00 0.00 0.00 3.08
455 456 3.895041 CAACATTGACCCTTAAACCACCT 59.105 43.478 0.00 0.00 0.00 4.00
471 472 8.177119 TGAACTTTATACTTGCCTTCAACATT 57.823 30.769 0.00 0.00 0.00 2.71
473 474 7.759489 ATGAACTTTATACTTGCCTTCAACA 57.241 32.000 0.00 0.00 0.00 3.33
515 516 5.126061 CAGGAAGGCAGCATGTAAACTTTAT 59.874 40.000 0.00 0.00 39.31 1.40
579 588 5.941948 GCTCAAGCTAACCAAAAGACTAA 57.058 39.130 0.00 0.00 38.21 2.24
608 619 7.025365 CACTATGTGATGTCATTCAGGTTTTG 58.975 38.462 0.00 0.00 35.23 2.44
611 622 4.637534 GCACTATGTGATGTCATTCAGGTT 59.362 41.667 1.52 0.00 35.23 3.50
673 732 5.073311 TGAGATAGACAAGTTTCGAAGGG 57.927 43.478 0.00 0.00 0.00 3.95
680 739 4.579869 ACGCCAATGAGATAGACAAGTTT 58.420 39.130 0.00 0.00 0.00 2.66
695 754 1.678970 GGCTCCAGGAAACGCCAAT 60.679 57.895 12.50 0.00 42.06 3.16
867 963 1.112916 TGTGTCGAGAGAGTGGGCAA 61.113 55.000 0.00 0.00 43.49 4.52
883 979 6.025896 GCTGAGTGTTTGATGATGTATTGTG 58.974 40.000 0.00 0.00 0.00 3.33
970 1089 1.821332 GGATGGAAGGCGCAGAAGG 60.821 63.158 10.83 0.00 0.00 3.46
985 1114 1.143684 AGCCATTAATCAGCCGTGGAT 59.856 47.619 3.83 0.00 31.59 3.41
989 1122 2.170607 ACAGTAGCCATTAATCAGCCGT 59.829 45.455 3.83 0.00 0.00 5.68
1005 1142 1.139654 GAGCTCATGGCCATCACAGTA 59.860 52.381 17.61 0.00 43.05 2.74
1500 1646 7.156673 AGCTAGTTTACACGTTGATAAAAGGA 58.843 34.615 0.00 0.00 0.00 3.36
1648 1808 6.957631 TCATCCACCAATGTCTTGTACTATT 58.042 36.000 0.00 0.00 0.00 1.73
1670 1830 2.738643 GCTAGCCGATACAGCAAACTCA 60.739 50.000 2.29 0.00 35.35 3.41
1721 1881 7.773690 AGTAACCATAATGTAAATCCTGACCAC 59.226 37.037 0.00 0.00 0.00 4.16
1746 1906 4.938226 GGATCAAGTCTACCAGAACCAAAG 59.062 45.833 0.00 0.00 0.00 2.77
1754 1914 7.607991 AGTTTTTGTATGGATCAAGTCTACCAG 59.392 37.037 0.00 0.00 35.84 4.00
1874 2041 1.598701 GACAACAGCATCCAAGGGGC 61.599 60.000 0.00 0.00 0.00 5.80
1882 2049 3.844577 AAATCAGCAGACAACAGCATC 57.155 42.857 0.00 0.00 0.00 3.91
1957 2124 1.921243 ACAAGAAGTTTTGGCGCAAC 58.079 45.000 10.83 5.18 32.32 4.17
1962 2129 4.929211 AGTCAAACAACAAGAAGTTTTGGC 59.071 37.500 0.00 0.00 38.74 4.52
1999 2168 3.057315 CGATCAAGTTGCAGATGGGTTTT 60.057 43.478 0.00 0.00 0.00 2.43
2002 2171 1.742761 CGATCAAGTTGCAGATGGGT 58.257 50.000 0.00 0.00 0.00 4.51
2004 2173 0.379669 GGCGATCAAGTTGCAGATGG 59.620 55.000 0.00 0.00 39.13 3.51
2097 2266 2.806244 TGAGTTTTCGCTAGAACCAAGC 59.194 45.455 0.00 0.00 35.86 4.01
2126 2295 2.827642 GTGCATCTGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
2127 2296 2.124403 GGTGCATCTGAGCCTGGG 60.124 66.667 0.00 0.00 0.00 4.45
2128 2297 1.451567 CAGGTGCATCTGAGCCTGG 60.452 63.158 23.04 0.00 43.39 4.45
2129 2298 0.180642 ATCAGGTGCATCTGAGCCTG 59.819 55.000 31.75 21.62 45.60 4.85
2130 2299 1.798626 TATCAGGTGCATCTGAGCCT 58.201 50.000 31.75 19.44 45.60 4.58
2131 2300 2.038164 TGATATCAGGTGCATCTGAGCC 59.962 50.000 31.75 22.56 45.60 4.70
2132 2301 3.397849 TGATATCAGGTGCATCTGAGC 57.602 47.619 31.75 23.20 45.60 4.26
2133 2302 4.930405 GTGATGATATCAGGTGCATCTGAG 59.070 45.833 31.75 6.91 45.60 3.35
2134 2303 4.262765 GGTGATGATATCAGGTGCATCTGA 60.263 45.833 30.90 30.90 46.32 3.27
2135 2304 4.001652 GGTGATGATATCAGGTGCATCTG 58.998 47.826 21.48 21.48 40.53 2.90
2136 2305 3.008813 GGGTGATGATATCAGGTGCATCT 59.991 47.826 11.78 0.00 40.53 2.90
2137 2306 3.008813 AGGGTGATGATATCAGGTGCATC 59.991 47.826 11.78 6.91 40.53 3.91
2138 2307 2.984604 AGGGTGATGATATCAGGTGCAT 59.015 45.455 11.78 0.00 40.53 3.96
2139 2308 2.411583 AGGGTGATGATATCAGGTGCA 58.588 47.619 11.78 4.18 40.53 4.57
2140 2309 3.181451 TGAAGGGTGATGATATCAGGTGC 60.181 47.826 11.78 1.63 40.53 5.01
2141 2310 4.694760 TGAAGGGTGATGATATCAGGTG 57.305 45.455 11.78 0.00 40.53 4.00
2142 2311 4.662179 ACATGAAGGGTGATGATATCAGGT 59.338 41.667 11.78 0.00 40.53 4.00
2143 2312 5.001874 CACATGAAGGGTGATGATATCAGG 58.998 45.833 11.78 0.00 40.53 3.86
2144 2313 4.454847 GCACATGAAGGGTGATGATATCAG 59.545 45.833 11.78 0.00 40.53 2.90
2145 2314 4.141436 TGCACATGAAGGGTGATGATATCA 60.141 41.667 8.10 8.10 38.54 2.15
2146 2315 4.392047 TGCACATGAAGGGTGATGATATC 58.608 43.478 0.00 0.00 38.54 1.63
2147 2316 4.442401 TGCACATGAAGGGTGATGATAT 57.558 40.909 0.00 0.00 38.54 1.63
2148 2317 3.929955 TGCACATGAAGGGTGATGATA 57.070 42.857 0.00 0.00 38.54 2.15
2149 2318 2.812836 TGCACATGAAGGGTGATGAT 57.187 45.000 0.00 0.00 38.54 2.45
2150 2319 2.371306 CATGCACATGAAGGGTGATGA 58.629 47.619 4.57 0.00 41.20 2.92
2151 2320 1.407618 CCATGCACATGAAGGGTGATG 59.592 52.381 12.18 0.00 41.20 3.07
2152 2321 1.687054 CCCATGCACATGAAGGGTGAT 60.687 52.381 12.18 0.00 41.20 3.06
2153 2322 0.323633 CCCATGCACATGAAGGGTGA 60.324 55.000 12.18 0.00 41.20 4.02
2154 2323 1.324740 CCCCATGCACATGAAGGGTG 61.325 60.000 12.18 0.00 41.20 4.61
2155 2324 1.000739 CCCCATGCACATGAAGGGT 59.999 57.895 12.18 0.00 41.20 4.34
2156 2325 0.105862 ATCCCCATGCACATGAAGGG 60.106 55.000 12.18 13.96 41.20 3.95
2157 2326 1.784358 AATCCCCATGCACATGAAGG 58.216 50.000 12.18 11.73 41.20 3.46
2158 2327 2.159014 CCAAATCCCCATGCACATGAAG 60.159 50.000 12.18 3.25 41.20 3.02
2159 2328 1.832366 CCAAATCCCCATGCACATGAA 59.168 47.619 12.18 0.00 41.20 2.57
2160 2329 1.487300 CCAAATCCCCATGCACATGA 58.513 50.000 12.18 0.00 41.20 3.07
2161 2330 0.466543 CCCAAATCCCCATGCACATG 59.533 55.000 3.56 3.56 38.51 3.21
2162 2331 1.339644 GCCCAAATCCCCATGCACAT 61.340 55.000 0.00 0.00 0.00 3.21
2163 2332 1.988956 GCCCAAATCCCCATGCACA 60.989 57.895 0.00 0.00 0.00 4.57
2164 2333 2.734720 GGCCCAAATCCCCATGCAC 61.735 63.158 0.00 0.00 0.00 4.57
2165 2334 2.365370 GGCCCAAATCCCCATGCA 60.365 61.111 0.00 0.00 0.00 3.96
2166 2335 1.273986 AAAGGCCCAAATCCCCATGC 61.274 55.000 0.00 0.00 0.00 4.06
2167 2336 2.041701 CTAAAGGCCCAAATCCCCATG 58.958 52.381 0.00 0.00 0.00 3.66
2168 2337 1.651235 ACTAAAGGCCCAAATCCCCAT 59.349 47.619 0.00 0.00 0.00 4.00
2169 2338 1.089123 ACTAAAGGCCCAAATCCCCA 58.911 50.000 0.00 0.00 0.00 4.96
2170 2339 2.243994 ACTACTAAAGGCCCAAATCCCC 59.756 50.000 0.00 0.00 0.00 4.81
2171 2340 3.664551 ACTACTAAAGGCCCAAATCCC 57.335 47.619 0.00 0.00 0.00 3.85
2172 2341 6.486993 CAGAATACTACTAAAGGCCCAAATCC 59.513 42.308 0.00 0.00 0.00 3.01
2173 2342 6.486993 CCAGAATACTACTAAAGGCCCAAATC 59.513 42.308 0.00 0.00 0.00 2.17
2174 2343 6.069029 ACCAGAATACTACTAAAGGCCCAAAT 60.069 38.462 0.00 0.00 0.00 2.32
2175 2344 5.252164 ACCAGAATACTACTAAAGGCCCAAA 59.748 40.000 0.00 0.00 0.00 3.28
2176 2345 4.786454 ACCAGAATACTACTAAAGGCCCAA 59.214 41.667 0.00 0.00 0.00 4.12
2177 2346 4.163458 CACCAGAATACTACTAAAGGCCCA 59.837 45.833 0.00 0.00 0.00 5.36
2178 2347 4.163649 ACACCAGAATACTACTAAAGGCCC 59.836 45.833 0.00 0.00 0.00 5.80
2179 2348 5.116882 CACACCAGAATACTACTAAAGGCC 58.883 45.833 0.00 0.00 0.00 5.19
2180 2349 5.731591 ACACACCAGAATACTACTAAAGGC 58.268 41.667 0.00 0.00 0.00 4.35
2181 2350 8.475639 ACATACACACCAGAATACTACTAAAGG 58.524 37.037 0.00 0.00 0.00 3.11
2184 2353 8.627403 GCTACATACACACCAGAATACTACTAA 58.373 37.037 0.00 0.00 0.00 2.24
2185 2354 7.997223 AGCTACATACACACCAGAATACTACTA 59.003 37.037 0.00 0.00 0.00 1.82
2186 2355 6.834451 AGCTACATACACACCAGAATACTACT 59.166 38.462 0.00 0.00 0.00 2.57
2187 2356 7.040473 AGCTACATACACACCAGAATACTAC 57.960 40.000 0.00 0.00 0.00 2.73
2188 2357 7.655521 AAGCTACATACACACCAGAATACTA 57.344 36.000 0.00 0.00 0.00 1.82
2189 2358 6.546428 AAGCTACATACACACCAGAATACT 57.454 37.500 0.00 0.00 0.00 2.12
2192 2361 9.712305 GAATATAAGCTACATACACACCAGAAT 57.288 33.333 0.00 0.00 0.00 2.40
2193 2362 8.924303 AGAATATAAGCTACATACACACCAGAA 58.076 33.333 0.00 0.00 0.00 3.02
2194 2363 8.478775 AGAATATAAGCTACATACACACCAGA 57.521 34.615 0.00 0.00 0.00 3.86
2215 2384 9.807921 TGACCCACTCTATTTTTCTTTTAGAAT 57.192 29.630 0.00 0.00 33.67 2.40
2216 2385 9.807921 ATGACCCACTCTATTTTTCTTTTAGAA 57.192 29.630 0.00 0.00 31.28 2.10
2217 2386 9.231297 CATGACCCACTCTATTTTTCTTTTAGA 57.769 33.333 0.00 0.00 0.00 2.10
2218 2387 7.970614 GCATGACCCACTCTATTTTTCTTTTAG 59.029 37.037 0.00 0.00 0.00 1.85
2219 2388 7.450014 TGCATGACCCACTCTATTTTTCTTTTA 59.550 33.333 0.00 0.00 0.00 1.52
2220 2389 6.267471 TGCATGACCCACTCTATTTTTCTTTT 59.733 34.615 0.00 0.00 0.00 2.27
2221 2390 5.774690 TGCATGACCCACTCTATTTTTCTTT 59.225 36.000 0.00 0.00 0.00 2.52
2222 2391 5.324409 TGCATGACCCACTCTATTTTTCTT 58.676 37.500 0.00 0.00 0.00 2.52
2223 2392 4.922206 TGCATGACCCACTCTATTTTTCT 58.078 39.130 0.00 0.00 0.00 2.52
2224 2393 4.702131 ACTGCATGACCCACTCTATTTTTC 59.298 41.667 0.00 0.00 0.00 2.29
2225 2394 4.666512 ACTGCATGACCCACTCTATTTTT 58.333 39.130 0.00 0.00 0.00 1.94
2226 2395 4.018960 AGACTGCATGACCCACTCTATTTT 60.019 41.667 0.00 0.00 0.00 1.82
2227 2396 3.521126 AGACTGCATGACCCACTCTATTT 59.479 43.478 0.00 0.00 0.00 1.40
2228 2397 3.110705 AGACTGCATGACCCACTCTATT 58.889 45.455 0.00 0.00 0.00 1.73
2229 2398 2.756907 AGACTGCATGACCCACTCTAT 58.243 47.619 0.00 0.00 0.00 1.98
2230 2399 2.238084 AGACTGCATGACCCACTCTA 57.762 50.000 0.00 0.00 0.00 2.43
2231 2400 1.356124 AAGACTGCATGACCCACTCT 58.644 50.000 0.00 0.00 0.00 3.24
2232 2401 2.191128 AAAGACTGCATGACCCACTC 57.809 50.000 0.00 0.00 0.00 3.51
2233 2402 3.264193 TCATAAAGACTGCATGACCCACT 59.736 43.478 0.00 0.00 0.00 4.00
2234 2403 3.609853 TCATAAAGACTGCATGACCCAC 58.390 45.455 0.00 0.00 0.00 4.61
2235 2404 3.998913 TCATAAAGACTGCATGACCCA 57.001 42.857 0.00 0.00 0.00 4.51
2236 2405 4.037208 CCATTCATAAAGACTGCATGACCC 59.963 45.833 0.00 0.00 0.00 4.46
2237 2406 4.498682 GCCATTCATAAAGACTGCATGACC 60.499 45.833 0.00 0.00 0.00 4.02
2238 2407 4.096833 TGCCATTCATAAAGACTGCATGAC 59.903 41.667 0.00 0.00 0.00 3.06
2239 2408 4.271661 TGCCATTCATAAAGACTGCATGA 58.728 39.130 0.00 0.00 0.00 3.07
2240 2409 4.499188 CCTGCCATTCATAAAGACTGCATG 60.499 45.833 0.00 0.00 0.00 4.06
2241 2410 3.635373 CCTGCCATTCATAAAGACTGCAT 59.365 43.478 0.00 0.00 0.00 3.96
2242 2411 3.018856 CCTGCCATTCATAAAGACTGCA 58.981 45.455 0.00 0.00 0.00 4.41
2243 2412 3.065925 GTCCTGCCATTCATAAAGACTGC 59.934 47.826 0.00 0.00 0.00 4.40
2244 2413 4.264253 TGTCCTGCCATTCATAAAGACTG 58.736 43.478 0.00 0.00 0.00 3.51
2245 2414 4.521146 CTGTCCTGCCATTCATAAAGACT 58.479 43.478 0.00 0.00 0.00 3.24
2246 2415 3.065925 GCTGTCCTGCCATTCATAAAGAC 59.934 47.826 0.00 0.00 0.00 3.01
2247 2416 3.282021 GCTGTCCTGCCATTCATAAAGA 58.718 45.455 0.00 0.00 0.00 2.52
2248 2417 3.018856 TGCTGTCCTGCCATTCATAAAG 58.981 45.455 0.00 0.00 0.00 1.85
2249 2418 3.084536 TGCTGTCCTGCCATTCATAAA 57.915 42.857 0.00 0.00 0.00 1.40
2250 2419 2.804986 TGCTGTCCTGCCATTCATAA 57.195 45.000 0.00 0.00 0.00 1.90
2251 2420 2.804986 TTGCTGTCCTGCCATTCATA 57.195 45.000 0.00 0.00 0.00 2.15
2252 2421 1.927487 TTTGCTGTCCTGCCATTCAT 58.073 45.000 0.00 0.00 0.00 2.57
2253 2422 1.546923 CATTTGCTGTCCTGCCATTCA 59.453 47.619 0.00 0.00 0.00 2.57
2254 2423 1.134907 CCATTTGCTGTCCTGCCATTC 60.135 52.381 0.00 0.00 0.00 2.67
2255 2424 0.899720 CCATTTGCTGTCCTGCCATT 59.100 50.000 0.00 0.00 0.00 3.16
2256 2425 0.040058 TCCATTTGCTGTCCTGCCAT 59.960 50.000 0.00 0.00 0.00 4.40
2257 2426 0.040058 ATCCATTTGCTGTCCTGCCA 59.960 50.000 0.00 0.00 0.00 4.92
2258 2427 1.135721 GAATCCATTTGCTGTCCTGCC 59.864 52.381 0.00 0.00 0.00 4.85
2259 2428 1.820519 TGAATCCATTTGCTGTCCTGC 59.179 47.619 0.00 0.00 0.00 4.85
2260 2429 3.671433 CGTTGAATCCATTTGCTGTCCTG 60.671 47.826 0.00 0.00 0.00 3.86
2261 2430 2.489329 CGTTGAATCCATTTGCTGTCCT 59.511 45.455 0.00 0.00 0.00 3.85
2262 2431 2.415893 CCGTTGAATCCATTTGCTGTCC 60.416 50.000 0.00 0.00 0.00 4.02
2263 2432 2.867429 CCGTTGAATCCATTTGCTGTC 58.133 47.619 0.00 0.00 0.00 3.51
2264 2433 1.067635 GCCGTTGAATCCATTTGCTGT 60.068 47.619 0.00 0.00 0.00 4.40
2265 2434 1.203052 AGCCGTTGAATCCATTTGCTG 59.797 47.619 0.00 0.00 0.00 4.41
2266 2435 1.474077 GAGCCGTTGAATCCATTTGCT 59.526 47.619 0.00 0.00 0.00 3.91
2267 2436 1.202114 TGAGCCGTTGAATCCATTTGC 59.798 47.619 0.00 0.00 0.00 3.68
2268 2437 2.159338 CCTGAGCCGTTGAATCCATTTG 60.159 50.000 0.00 0.00 0.00 2.32
2269 2438 2.094675 CCTGAGCCGTTGAATCCATTT 58.905 47.619 0.00 0.00 0.00 2.32
2270 2439 1.755179 CCTGAGCCGTTGAATCCATT 58.245 50.000 0.00 0.00 0.00 3.16
2271 2440 0.749454 GCCTGAGCCGTTGAATCCAT 60.749 55.000 0.00 0.00 0.00 3.41
2272 2441 1.377202 GCCTGAGCCGTTGAATCCA 60.377 57.895 0.00 0.00 0.00 3.41
2273 2442 3.502572 GCCTGAGCCGTTGAATCC 58.497 61.111 0.00 0.00 0.00 3.01
2283 2452 0.540597 AAACCAAAGGAGGCCTGAGC 60.541 55.000 12.00 0.00 32.13 4.26
2284 2453 2.305927 TCTAAACCAAAGGAGGCCTGAG 59.694 50.000 12.00 0.00 32.13 3.35
2285 2454 2.305927 CTCTAAACCAAAGGAGGCCTGA 59.694 50.000 12.00 0.00 32.13 3.86
2286 2455 2.619074 CCTCTAAACCAAAGGAGGCCTG 60.619 54.545 12.00 0.00 38.82 4.85
2287 2456 1.636003 CCTCTAAACCAAAGGAGGCCT 59.364 52.381 3.86 3.86 38.82 5.19
2288 2457 1.633945 TCCTCTAAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 43.46 5.19
2289 2458 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
2290 2459 5.443230 AGATTCCTCTAAACCAAAGGAGG 57.557 43.478 0.00 0.00 44.69 4.30
2291 2460 6.241645 ACAAGATTCCTCTAAACCAAAGGAG 58.758 40.000 0.00 0.00 40.21 3.69
2292 2461 6.200878 ACAAGATTCCTCTAAACCAAAGGA 57.799 37.500 0.00 0.00 37.42 3.36
2293 2462 6.599638 CCTACAAGATTCCTCTAAACCAAAGG 59.400 42.308 0.00 0.00 0.00 3.11
2294 2463 7.394816 TCCTACAAGATTCCTCTAAACCAAAG 58.605 38.462 0.00 0.00 0.00 2.77
2295 2464 7.324388 TCCTACAAGATTCCTCTAAACCAAA 57.676 36.000 0.00 0.00 0.00 3.28
2296 2465 6.945636 TCCTACAAGATTCCTCTAAACCAA 57.054 37.500 0.00 0.00 0.00 3.67
2297 2466 6.945636 TTCCTACAAGATTCCTCTAAACCA 57.054 37.500 0.00 0.00 0.00 3.67
2298 2467 8.809468 AAATTCCTACAAGATTCCTCTAAACC 57.191 34.615 0.00 0.00 0.00 3.27
2299 2468 9.449719 TGAAATTCCTACAAGATTCCTCTAAAC 57.550 33.333 0.00 0.00 0.00 2.01
2303 2472 8.435982 CCTATGAAATTCCTACAAGATTCCTCT 58.564 37.037 0.00 0.00 0.00 3.69
2304 2473 8.432805 TCCTATGAAATTCCTACAAGATTCCTC 58.567 37.037 0.00 0.00 0.00 3.71
2305 2474 8.337118 TCCTATGAAATTCCTACAAGATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
2309 2478 9.621239 TCCTATCCTATGAAATTCCTACAAGAT 57.379 33.333 0.00 0.00 0.00 2.40
2310 2479 9.621239 ATCCTATCCTATGAAATTCCTACAAGA 57.379 33.333 0.00 0.00 0.00 3.02
2342 2511 9.981114 CAAAGGGCTCTAAAGAAAATTTTTCTA 57.019 29.630 21.47 8.95 0.00 2.10
2343 2512 7.442364 GCAAAGGGCTCTAAAGAAAATTTTTCT 59.558 33.333 16.82 16.82 40.25 2.52
2344 2513 7.576236 GCAAAGGGCTCTAAAGAAAATTTTTC 58.424 34.615 12.94 12.94 40.25 2.29
2345 2514 7.496529 GCAAAGGGCTCTAAAGAAAATTTTT 57.503 32.000 4.63 0.00 40.25 1.94
2361 2530 4.215109 TCCATTCCTATAAAGCAAAGGGC 58.785 43.478 0.00 0.00 45.30 5.19
2362 2531 6.550854 TGATTCCATTCCTATAAAGCAAAGGG 59.449 38.462 0.00 0.00 0.00 3.95
2363 2532 7.587037 TGATTCCATTCCTATAAAGCAAAGG 57.413 36.000 0.00 0.00 0.00 3.11
2367 2536 9.466497 GGAATATGATTCCATTCCTATAAAGCA 57.534 33.333 12.43 0.00 44.56 3.91
2401 2570 5.574970 AATGTGGAGGATAGGAAGAATCC 57.425 43.478 0.00 0.00 46.98 3.01
2402 2571 6.595682 TGAAATGTGGAGGATAGGAAGAATC 58.404 40.000 0.00 0.00 0.00 2.52
2403 2572 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
2404 2573 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
2405 2574 7.568738 TCTTATGAAATGTGGAGGATAGGAAGA 59.431 37.037 0.00 0.00 0.00 2.87
2406 2575 7.739825 TCTTATGAAATGTGGAGGATAGGAAG 58.260 38.462 0.00 0.00 0.00 3.46
2407 2576 7.690454 TCTTATGAAATGTGGAGGATAGGAA 57.310 36.000 0.00 0.00 0.00 3.36
2408 2577 7.690454 TTCTTATGAAATGTGGAGGATAGGA 57.310 36.000 0.00 0.00 0.00 2.94
2409 2578 8.752005 TTTTCTTATGAAATGTGGAGGATAGG 57.248 34.615 4.77 0.00 41.24 2.57
2425 2594 9.899226 GGCTAGGCTAATGTTTATTTTCTTATG 57.101 33.333 9.46 0.00 0.00 1.90
2426 2595 9.868160 AGGCTAGGCTAATGTTTATTTTCTTAT 57.132 29.630 18.73 0.00 0.00 1.73
2428 2597 9.343539 CTAGGCTAGGCTAATGTTTATTTTCTT 57.656 33.333 24.63 0.00 0.00 2.52
2429 2598 8.714906 TCTAGGCTAGGCTAATGTTTATTTTCT 58.285 33.333 24.63 0.00 0.00 2.52
2430 2599 8.775527 GTCTAGGCTAGGCTAATGTTTATTTTC 58.224 37.037 24.63 3.69 0.00 2.29
2431 2600 8.495260 AGTCTAGGCTAGGCTAATGTTTATTTT 58.505 33.333 26.45 0.00 39.36 1.82
2432 2601 8.035448 AGTCTAGGCTAGGCTAATGTTTATTT 57.965 34.615 26.45 0.00 39.36 1.40
2433 2602 7.290248 TGAGTCTAGGCTAGGCTAATGTTTATT 59.710 37.037 27.51 2.70 41.66 1.40
2434 2603 6.782988 TGAGTCTAGGCTAGGCTAATGTTTAT 59.217 38.462 27.51 3.48 41.66 1.40
2435 2604 6.134055 TGAGTCTAGGCTAGGCTAATGTTTA 58.866 40.000 27.51 6.70 41.66 2.01
2436 2605 4.962995 TGAGTCTAGGCTAGGCTAATGTTT 59.037 41.667 27.51 5.03 41.66 2.83
2437 2606 4.547671 TGAGTCTAGGCTAGGCTAATGTT 58.452 43.478 27.51 5.81 41.66 2.71
2438 2607 4.186077 TGAGTCTAGGCTAGGCTAATGT 57.814 45.455 27.51 6.59 41.66 2.71
2439 2608 5.477510 CATTGAGTCTAGGCTAGGCTAATG 58.522 45.833 27.51 26.45 41.66 1.90
2440 2609 4.530161 CCATTGAGTCTAGGCTAGGCTAAT 59.470 45.833 27.51 21.39 41.66 1.73
2441 2610 3.898123 CCATTGAGTCTAGGCTAGGCTAA 59.102 47.826 27.51 18.84 41.66 3.09
2442 2611 3.140332 TCCATTGAGTCTAGGCTAGGCTA 59.860 47.826 27.51 23.36 41.66 3.93
2443 2612 2.091055 TCCATTGAGTCTAGGCTAGGCT 60.091 50.000 27.78 27.78 44.89 4.58
2444 2613 2.320781 TCCATTGAGTCTAGGCTAGGC 58.679 52.381 18.34 18.34 0.00 3.93
2445 2614 5.359194 TTTTCCATTGAGTCTAGGCTAGG 57.641 43.478 20.92 3.85 0.00 3.02
2465 2634 8.426489 CCCATTGATTCACATCATAGGATTTTT 58.574 33.333 0.00 0.00 39.28 1.94
2466 2635 7.472381 GCCCATTGATTCACATCATAGGATTTT 60.472 37.037 0.00 0.00 39.28 1.82
2467 2636 6.014840 GCCCATTGATTCACATCATAGGATTT 60.015 38.462 0.00 0.00 39.28 2.17
2468 2637 5.479375 GCCCATTGATTCACATCATAGGATT 59.521 40.000 0.00 0.00 39.28 3.01
2469 2638 5.014858 GCCCATTGATTCACATCATAGGAT 58.985 41.667 5.46 0.00 39.28 3.24
2470 2639 4.141205 TGCCCATTGATTCACATCATAGGA 60.141 41.667 5.46 0.00 39.28 2.94
2471 2640 4.146564 TGCCCATTGATTCACATCATAGG 58.853 43.478 0.00 0.00 39.28 2.57
2472 2641 5.710567 AGATGCCCATTGATTCACATCATAG 59.289 40.000 13.54 0.00 39.28 2.23
2473 2642 5.637127 AGATGCCCATTGATTCACATCATA 58.363 37.500 13.54 0.00 39.28 2.15
2474 2643 4.480115 AGATGCCCATTGATTCACATCAT 58.520 39.130 13.54 2.83 39.28 2.45
2475 2644 3.887110 GAGATGCCCATTGATTCACATCA 59.113 43.478 13.54 0.00 37.67 3.07
2476 2645 3.255149 GGAGATGCCCATTGATTCACATC 59.745 47.826 6.23 6.23 35.31 3.06
2477 2646 3.228453 GGAGATGCCCATTGATTCACAT 58.772 45.455 0.00 0.00 0.00 3.21
2478 2647 2.658285 GGAGATGCCCATTGATTCACA 58.342 47.619 0.00 0.00 0.00 3.58
2479 2648 1.605710 CGGAGATGCCCATTGATTCAC 59.394 52.381 0.00 0.00 0.00 3.18
2480 2649 1.212688 ACGGAGATGCCCATTGATTCA 59.787 47.619 0.00 0.00 0.00 2.57
2481 2650 1.972872 ACGGAGATGCCCATTGATTC 58.027 50.000 0.00 0.00 0.00 2.52
2482 2651 2.301346 GAACGGAGATGCCCATTGATT 58.699 47.619 0.00 0.00 0.00 2.57
2483 2652 1.477558 GGAACGGAGATGCCCATTGAT 60.478 52.381 0.00 0.00 0.00 2.57
2484 2653 0.107214 GGAACGGAGATGCCCATTGA 60.107 55.000 0.00 0.00 0.00 2.57
2485 2654 0.107017 AGGAACGGAGATGCCCATTG 60.107 55.000 0.00 0.00 0.00 2.82
2486 2655 1.507140 TAGGAACGGAGATGCCCATT 58.493 50.000 0.00 0.00 0.00 3.16
2487 2656 1.734655 ATAGGAACGGAGATGCCCAT 58.265 50.000 0.00 0.00 0.00 4.00
2488 2657 1.416401 GAATAGGAACGGAGATGCCCA 59.584 52.381 0.00 0.00 0.00 5.36
2489 2658 1.270893 GGAATAGGAACGGAGATGCCC 60.271 57.143 0.00 0.00 0.00 5.36
2490 2659 1.694696 AGGAATAGGAACGGAGATGCC 59.305 52.381 0.00 0.00 0.00 4.40
2491 2660 4.810191 ATAGGAATAGGAACGGAGATGC 57.190 45.455 0.00 0.00 0.00 3.91
2492 2661 6.159988 GTGAATAGGAATAGGAACGGAGATG 58.840 44.000 0.00 0.00 0.00 2.90
2493 2662 5.839063 TGTGAATAGGAATAGGAACGGAGAT 59.161 40.000 0.00 0.00 0.00 2.75
2494 2663 5.205821 TGTGAATAGGAATAGGAACGGAGA 58.794 41.667 0.00 0.00 0.00 3.71
2495 2664 5.531122 TGTGAATAGGAATAGGAACGGAG 57.469 43.478 0.00 0.00 0.00 4.63
2496 2665 5.531122 CTGTGAATAGGAATAGGAACGGA 57.469 43.478 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.