Multiple sequence alignment - TraesCS5D01G226100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G226100 chr5D 100.000 6065 0 0 1929 7993 334306289 334300225 0.000000e+00 11201.0
1 TraesCS5D01G226100 chr5D 100.000 1503 0 0 1 1503 334308217 334306715 0.000000e+00 2776.0
2 TraesCS5D01G226100 chr5D 84.512 1414 200 12 2452 3862 334406692 334405295 0.000000e+00 1380.0
3 TraesCS5D01G226100 chr5D 84.993 1346 175 14 2496 3829 334260805 334259475 0.000000e+00 1341.0
4 TraesCS5D01G226100 chr5D 82.285 1208 159 37 4646 5816 334404684 334403495 0.000000e+00 994.0
5 TraesCS5D01G226100 chr5D 84.127 945 141 5 4568 5511 334258860 334257924 0.000000e+00 905.0
6 TraesCS5D01G226100 chr5D 83.983 949 131 15 5868 6813 334403418 334402488 0.000000e+00 891.0
7 TraesCS5D01G226100 chr5D 86.656 637 61 18 7374 7993 334424854 334424225 0.000000e+00 684.0
8 TraesCS5D01G226100 chr5D 77.210 724 118 25 5544 6256 334257865 334257178 5.850000e-101 379.0
9 TraesCS5D01G226100 chr5D 86.552 290 33 5 1193 1480 334408770 334408485 1.670000e-81 315.0
10 TraesCS5D01G226100 chr5D 83.206 262 15 17 716 957 334319065 334318813 6.280000e-51 213.0
11 TraesCS5D01G226100 chr5A 91.768 4956 258 71 2335 7209 436107585 436102699 0.000000e+00 6754.0
12 TraesCS5D01G226100 chr5A 85.364 1346 179 11 2520 3862 436180058 436178728 0.000000e+00 1378.0
13 TraesCS5D01G226100 chr5A 84.644 1348 180 14 2493 3829 436094833 436093502 0.000000e+00 1317.0
14 TraesCS5D01G226100 chr5A 82.744 1217 153 38 4638 5816 436178160 436176963 0.000000e+00 1031.0
15 TraesCS5D01G226100 chr5A 83.874 986 138 16 5868 6852 436176887 436175922 0.000000e+00 920.0
16 TraesCS5D01G226100 chr5A 83.386 945 144 9 4568 5507 436092761 436091825 0.000000e+00 863.0
17 TraesCS5D01G226100 chr5A 92.530 589 24 9 7415 7993 436102695 436102117 0.000000e+00 826.0
18 TraesCS5D01G226100 chr5A 87.786 655 35 23 846 1478 436108764 436108133 0.000000e+00 725.0
19 TraesCS5D01G226100 chr5A 85.981 642 63 21 7374 7993 436199461 436198825 0.000000e+00 662.0
20 TraesCS5D01G226100 chr5A 77.341 737 124 21 5528 6255 436091768 436091066 5.810000e-106 396.0
21 TraesCS5D01G226100 chr5A 81.818 451 39 20 1929 2339 436108053 436107606 9.940000e-89 339.0
22 TraesCS5D01G226100 chr5A 87.171 304 29 7 1193 1490 436181082 436180783 3.570000e-88 337.0
23 TraesCS5D01G226100 chr5A 90.270 185 18 0 1290 1474 436096901 436096717 8.010000e-60 243.0
24 TraesCS5D01G226100 chr5A 83.643 269 16 13 95 363 436109821 436109581 2.240000e-55 228.0
25 TraesCS5D01G226100 chr5A 84.834 211 17 3 535 745 436109576 436109381 1.760000e-46 198.0
26 TraesCS5D01G226100 chr5A 100.000 28 0 0 6898 6925 436090676 436090649 1.400000e-02 52.8
27 TraesCS5D01G226100 chr5B 94.340 1484 72 3 2454 3934 391302632 391301158 0.000000e+00 2265.0
28 TraesCS5D01G226100 chr5B 92.593 1215 80 7 5717 6927 391299956 391298748 0.000000e+00 1736.0
29 TraesCS5D01G226100 chr5B 93.744 1071 57 7 4647 5716 391301159 391300098 0.000000e+00 1598.0
30 TraesCS5D01G226100 chr5B 85.704 1343 168 12 2496 3829 391150309 391148982 0.000000e+00 1395.0
31 TraesCS5D01G226100 chr5B 84.664 1415 200 10 2450 3862 391448089 391446690 0.000000e+00 1395.0
32 TraesCS5D01G226100 chr5B 93.955 794 32 4 7216 7993 391163026 391162233 0.000000e+00 1186.0
33 TraesCS5D01G226100 chr5B 87.414 1017 66 36 526 1501 391304311 391303316 0.000000e+00 1112.0
34 TraesCS5D01G226100 chr5B 87.162 888 103 9 4638 5520 391446087 391445206 0.000000e+00 998.0
35 TraesCS5D01G226100 chr5B 83.316 989 142 17 5868 6852 391444807 391443838 0.000000e+00 891.0
36 TraesCS5D01G226100 chr5B 83.598 945 146 5 4568 5511 391148243 391147307 0.000000e+00 878.0
37 TraesCS5D01G226100 chr5B 86.772 635 67 17 7374 7993 391462766 391462134 0.000000e+00 691.0
38 TraesCS5D01G226100 chr5B 88.418 354 26 6 21 362 391304665 391304315 5.770000e-111 412.0
39 TraesCS5D01G226100 chr5B 76.408 746 137 18 5516 6256 391147266 391146555 4.560000e-97 366.0
40 TraesCS5D01G226100 chr5B 94.017 234 12 1 6985 7218 391163291 391163060 3.550000e-93 353.0
41 TraesCS5D01G226100 chr5B 90.500 200 14 4 2028 2225 391303088 391302892 7.960000e-65 259.0
42 TraesCS5D01G226100 chr6D 86.416 346 41 6 7648 7993 10718496 10718157 2.720000e-99 374.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G226100 chr5D 334300225 334308217 7992 True 6988.500000 11201 100.000000 1 7993 2 chr5D.!!$R4 7992
1 TraesCS5D01G226100 chr5D 334402488 334408770 6282 True 895.000000 1380 84.333000 1193 6813 4 chr5D.!!$R5 5620
2 TraesCS5D01G226100 chr5D 334257178 334260805 3627 True 875.000000 1341 82.110000 2496 6256 3 chr5D.!!$R3 3760
3 TraesCS5D01G226100 chr5D 334424225 334424854 629 True 684.000000 684 86.656000 7374 7993 1 chr5D.!!$R2 619
4 TraesCS5D01G226100 chr5A 436102117 436109821 7704 True 1511.666667 6754 87.063167 95 7993 6 chr5A.!!$R3 7898
5 TraesCS5D01G226100 chr5A 436175922 436181082 5160 True 916.500000 1378 84.788250 1193 6852 4 chr5A.!!$R4 5659
6 TraesCS5D01G226100 chr5A 436198825 436199461 636 True 662.000000 662 85.981000 7374 7993 1 chr5A.!!$R1 619
7 TraesCS5D01G226100 chr5A 436090649 436096901 6252 True 574.360000 1317 87.128200 1290 6925 5 chr5A.!!$R2 5635
8 TraesCS5D01G226100 chr5B 391298748 391304665 5917 True 1230.333333 2265 91.168167 21 6927 6 chr5B.!!$R4 6906
9 TraesCS5D01G226100 chr5B 391443838 391448089 4251 True 1094.666667 1395 85.047333 2450 6852 3 chr5B.!!$R5 4402
10 TraesCS5D01G226100 chr5B 391146555 391150309 3754 True 879.666667 1395 81.903333 2496 6256 3 chr5B.!!$R2 3760
11 TraesCS5D01G226100 chr5B 391162233 391163291 1058 True 769.500000 1186 93.986000 6985 7993 2 chr5B.!!$R3 1008
12 TraesCS5D01G226100 chr5B 391462134 391462766 632 True 691.000000 691 86.772000 7374 7993 1 chr5B.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 147 0.038526 CCCACCGCGTGATAGGATAC 60.039 60.0 4.92 0.00 35.23 2.24 F
426 439 0.329261 AGTTTGCAGCCAGCCTATCA 59.671 50.0 0.00 0.00 44.83 2.15 F
1348 1931 0.321653 GGGAACATCAGCTGGACGTT 60.322 55.0 15.13 14.30 0.00 3.99 F
2231 5094 0.035056 CTCGAGCCCCAACCAAGAAT 60.035 55.0 0.00 0.00 0.00 2.40 F
2232 5095 0.322456 TCGAGCCCCAACCAAGAATG 60.322 55.0 0.00 0.00 0.00 2.67 F
3953 7124 0.924090 GGCATGATCGTCTCGTGTTC 59.076 55.0 0.00 2.70 42.05 3.18 F
4286 7478 0.744771 GACGGGGGTGATGAAGCTTC 60.745 60.0 19.89 19.89 0.00 3.86 F
4288 7480 1.026718 CGGGGGTGATGAAGCTTCAC 61.027 60.0 30.66 22.67 40.49 3.18 F
5677 9310 1.097547 GCACGATCATGTTCTGGGGG 61.098 60.0 2.44 0.00 0.00 5.40 F
6173 10005 0.316204 CCCAAACTTCAAGCAGCCTG 59.684 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 1689 0.249031 TCGTCATGGATGCTAGCACG 60.249 55.000 22.07 17.02 0.00 5.34 R
1991 4730 1.304547 CGGAGGGCTCGGGAGATAT 60.305 63.158 0.00 0.00 38.80 1.63 R
3010 6005 1.679032 GCGGTAATCCAGACAAAGCCT 60.679 52.381 0.00 0.00 0.00 4.58 R
3969 7140 0.188342 AGGTGGGCCAAACAGTGAAT 59.812 50.000 8.40 0.00 37.19 2.57 R
3970 7141 0.847373 TAGGTGGGCCAAACAGTGAA 59.153 50.000 8.40 0.00 37.19 3.18 R
5609 9234 1.909700 TCTTGCAGTTGCCCTTTAGG 58.090 50.000 1.06 0.00 41.18 2.69 R
6007 9839 0.325933 TGCCTGCAGAGTTAGCACAT 59.674 50.000 17.39 0.00 37.02 3.21 R
6173 10005 2.094545 CCCCTTAAAGCTGTGCAATGTC 60.095 50.000 0.00 0.00 0.00 3.06 R
6590 10426 0.324738 TTGAGCTCCCACTCCGAGAT 60.325 55.000 12.15 0.00 35.72 2.75 R
7321 11203 1.019673 CAAGGCGACCAGGATGAATG 58.980 55.000 0.00 0.00 39.69 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.751767 ATGGTCTTCTCTTTAGCCTCAG 57.248 45.455 0.00 0.00 0.00 3.35
51 52 0.472471 AGCCTCAGGACGAAAACCAA 59.528 50.000 0.00 0.00 0.00 3.67
52 53 0.875059 GCCTCAGGACGAAAACCAAG 59.125 55.000 0.00 0.00 0.00 3.61
65 66 2.287393 AACCAAGCAAACGTTTGACC 57.713 45.000 38.04 23.80 40.55 4.02
114 120 2.017049 GACCAGAAAATCCCATGTCCG 58.983 52.381 0.00 0.00 0.00 4.79
135 147 0.038526 CCCACCGCGTGATAGGATAC 60.039 60.000 4.92 0.00 35.23 2.24
158 171 1.742761 CTTCCTTCGCATCCACACAT 58.257 50.000 0.00 0.00 0.00 3.21
167 180 0.839277 CATCCACACATCCCCTGCTA 59.161 55.000 0.00 0.00 0.00 3.49
171 184 1.202734 CCACACATCCCCTGCTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
172 185 1.135094 ACACATCCCCTGCTATGAGG 58.865 55.000 0.00 0.00 0.00 3.86
174 187 1.492176 CACATCCCCTGCTATGAGGTT 59.508 52.381 0.00 0.00 0.00 3.50
179 192 2.122768 CCCCTGCTATGAGGTTCTCTT 58.877 52.381 0.00 0.00 0.00 2.85
181 194 3.711704 CCCCTGCTATGAGGTTCTCTTTA 59.288 47.826 0.00 0.00 0.00 1.85
182 195 4.164221 CCCCTGCTATGAGGTTCTCTTTAA 59.836 45.833 0.00 0.00 0.00 1.52
279 292 4.331717 CGTTACCCGCTGACTTTGATTTAT 59.668 41.667 0.00 0.00 0.00 1.40
310 323 2.756760 GGGCTTGAATTCTCATCAGCAA 59.243 45.455 7.05 0.00 0.00 3.91
346 359 3.056749 ACTGTAGAAAACTCCAGCGGTAG 60.057 47.826 0.00 0.00 0.00 3.18
357 370 3.827302 CTCCAGCGGTAGGAACAGTATAT 59.173 47.826 7.12 0.00 34.08 0.86
366 379 7.360776 GCGGTAGGAACAGTATATGTAGTACTC 60.361 44.444 0.00 0.00 43.00 2.59
368 381 7.941238 GGTAGGAACAGTATATGTAGTACTCCA 59.059 40.741 0.00 0.00 43.00 3.86
369 382 9.517868 GTAGGAACAGTATATGTAGTACTCCAT 57.482 37.037 6.19 6.19 43.00 3.41
371 384 9.080097 AGGAACAGTATATGTAGTACTCCATTC 57.920 37.037 6.23 0.00 43.00 2.67
373 386 7.450124 ACAGTATATGTAGTACTCCATTCGG 57.550 40.000 6.23 2.45 41.60 4.30
374 387 6.433404 ACAGTATATGTAGTACTCCATTCGGG 59.567 42.308 6.23 0.00 41.60 5.14
375 388 6.657966 CAGTATATGTAGTACTCCATTCGGGA 59.342 42.308 6.23 0.00 45.89 5.14
390 403 2.695314 GGGAACCGAGCATAGCTTG 58.305 57.895 0.00 0.00 37.80 4.01
396 409 1.723870 CGAGCATAGCTTGGTTGGC 59.276 57.895 0.00 0.00 39.88 4.52
397 410 1.026182 CGAGCATAGCTTGGTTGGCA 61.026 55.000 0.00 0.00 39.88 4.92
398 411 1.176527 GAGCATAGCTTGGTTGGCAA 58.823 50.000 0.00 0.00 39.88 4.52
399 412 0.890683 AGCATAGCTTGGTTGGCAAC 59.109 50.000 21.92 21.92 33.89 4.17
400 413 0.456653 GCATAGCTTGGTTGGCAACG 60.457 55.000 22.95 11.37 42.51 4.10
401 414 0.456653 CATAGCTTGGTTGGCAACGC 60.457 55.000 22.95 19.98 42.51 4.84
402 415 0.893270 ATAGCTTGGTTGGCAACGCA 60.893 50.000 24.03 19.59 42.51 5.24
403 416 1.791103 TAGCTTGGTTGGCAACGCAC 61.791 55.000 24.03 14.58 42.51 5.34
404 417 2.353376 CTTGGTTGGCAACGCACG 60.353 61.111 22.95 15.34 42.51 5.34
405 418 3.822403 CTTGGTTGGCAACGCACGG 62.822 63.158 22.95 13.06 42.51 4.94
408 421 4.025401 GTTGGCAACGCACGGGAG 62.025 66.667 15.49 0.00 42.51 4.30
409 422 4.555709 TTGGCAACGCACGGGAGT 62.556 61.111 0.00 0.00 43.71 3.85
410 423 4.555709 TGGCAACGCACGGGAGTT 62.556 61.111 0.00 0.00 40.78 3.01
411 424 3.284449 GGCAACGCACGGGAGTTT 61.284 61.111 3.25 0.00 44.67 2.66
412 425 2.051345 GCAACGCACGGGAGTTTG 60.051 61.111 3.25 1.69 44.67 2.93
413 426 2.051345 CAACGCACGGGAGTTTGC 60.051 61.111 3.25 0.00 44.67 3.68
414 427 2.515057 AACGCACGGGAGTTTGCA 60.515 55.556 0.00 0.00 44.67 4.08
415 428 2.542907 AACGCACGGGAGTTTGCAG 61.543 57.895 0.00 0.00 44.67 4.41
416 429 4.389576 CGCACGGGAGTTTGCAGC 62.390 66.667 0.00 0.00 44.67 5.25
417 430 4.043200 GCACGGGAGTTTGCAGCC 62.043 66.667 0.00 0.00 44.67 4.85
418 431 2.594303 CACGGGAGTTTGCAGCCA 60.594 61.111 0.00 0.00 44.67 4.75
419 432 2.281761 ACGGGAGTTTGCAGCCAG 60.282 61.111 0.00 0.00 43.33 4.85
420 433 3.741476 CGGGAGTTTGCAGCCAGC 61.741 66.667 0.00 0.00 45.96 4.85
421 434 3.376918 GGGAGTTTGCAGCCAGCC 61.377 66.667 0.00 0.00 44.83 4.85
422 435 2.282745 GGAGTTTGCAGCCAGCCT 60.283 61.111 0.00 0.00 44.83 4.58
423 436 1.002134 GGAGTTTGCAGCCAGCCTA 60.002 57.895 0.00 0.00 44.83 3.93
424 437 0.394899 GGAGTTTGCAGCCAGCCTAT 60.395 55.000 0.00 0.00 44.83 2.57
425 438 1.020437 GAGTTTGCAGCCAGCCTATC 58.980 55.000 0.00 0.00 44.83 2.08
426 439 0.329261 AGTTTGCAGCCAGCCTATCA 59.671 50.000 0.00 0.00 44.83 2.15
427 440 0.737219 GTTTGCAGCCAGCCTATCAG 59.263 55.000 0.00 0.00 44.83 2.90
428 441 0.329261 TTTGCAGCCAGCCTATCAGT 59.671 50.000 0.00 0.00 44.83 3.41
429 442 0.393402 TTGCAGCCAGCCTATCAGTG 60.393 55.000 0.00 0.00 44.83 3.66
430 443 1.222936 GCAGCCAGCCTATCAGTGT 59.777 57.895 0.00 0.00 37.23 3.55
431 444 0.393537 GCAGCCAGCCTATCAGTGTT 60.394 55.000 0.00 0.00 37.23 3.32
432 445 1.661341 CAGCCAGCCTATCAGTGTTC 58.339 55.000 0.00 0.00 0.00 3.18
433 446 1.065926 CAGCCAGCCTATCAGTGTTCA 60.066 52.381 0.00 0.00 0.00 3.18
434 447 1.630369 AGCCAGCCTATCAGTGTTCAA 59.370 47.619 0.00 0.00 0.00 2.69
435 448 2.012673 GCCAGCCTATCAGTGTTCAAG 58.987 52.381 0.00 0.00 0.00 3.02
436 449 2.616510 GCCAGCCTATCAGTGTTCAAGT 60.617 50.000 0.00 0.00 0.00 3.16
437 450 3.265791 CCAGCCTATCAGTGTTCAAGTC 58.734 50.000 0.00 0.00 0.00 3.01
438 451 3.055530 CCAGCCTATCAGTGTTCAAGTCT 60.056 47.826 0.00 0.00 0.00 3.24
439 452 4.180057 CAGCCTATCAGTGTTCAAGTCTC 58.820 47.826 0.00 0.00 0.00 3.36
440 453 3.834813 AGCCTATCAGTGTTCAAGTCTCA 59.165 43.478 0.00 0.00 0.00 3.27
441 454 4.081752 AGCCTATCAGTGTTCAAGTCTCAG 60.082 45.833 0.00 0.00 0.00 3.35
442 455 4.180057 CCTATCAGTGTTCAAGTCTCAGC 58.820 47.826 0.00 0.00 0.00 4.26
443 456 4.081752 CCTATCAGTGTTCAAGTCTCAGCT 60.082 45.833 0.00 0.00 0.00 4.24
444 457 3.827008 TCAGTGTTCAAGTCTCAGCTT 57.173 42.857 0.00 0.00 0.00 3.74
445 458 4.937201 TCAGTGTTCAAGTCTCAGCTTA 57.063 40.909 0.00 0.00 0.00 3.09
446 459 5.276461 TCAGTGTTCAAGTCTCAGCTTAA 57.724 39.130 0.00 0.00 0.00 1.85
447 460 5.292765 TCAGTGTTCAAGTCTCAGCTTAAG 58.707 41.667 0.00 0.00 0.00 1.85
448 461 4.061596 AGTGTTCAAGTCTCAGCTTAAGC 58.938 43.478 20.09 20.09 42.49 3.09
462 475 3.466836 GCTTAAGCGTTTAGTGTTCACG 58.533 45.455 12.53 0.00 36.98 4.35
463 476 3.663493 GCTTAAGCGTTTAGTGTTCACGG 60.663 47.826 12.53 0.00 34.42 4.94
464 477 1.944032 AAGCGTTTAGTGTTCACGGT 58.056 45.000 0.00 0.00 45.96 4.83
465 478 1.214367 AGCGTTTAGTGTTCACGGTG 58.786 50.000 0.56 0.56 42.65 4.94
466 479 0.932399 GCGTTTAGTGTTCACGGTGT 59.068 50.000 8.17 0.00 34.42 4.16
467 480 1.328374 GCGTTTAGTGTTCACGGTGTT 59.672 47.619 8.17 0.00 34.42 3.32
468 481 2.223089 GCGTTTAGTGTTCACGGTGTTT 60.223 45.455 8.17 0.00 34.42 2.83
469 482 3.728566 GCGTTTAGTGTTCACGGTGTTTT 60.729 43.478 8.17 0.00 34.42 2.43
470 483 4.023783 CGTTTAGTGTTCACGGTGTTTTC 58.976 43.478 8.17 0.00 0.00 2.29
471 484 4.201744 CGTTTAGTGTTCACGGTGTTTTCT 60.202 41.667 8.17 6.07 0.00 2.52
472 485 5.633927 GTTTAGTGTTCACGGTGTTTTCTT 58.366 37.500 8.17 0.00 0.00 2.52
473 486 5.473796 TTAGTGTTCACGGTGTTTTCTTC 57.526 39.130 8.17 0.00 0.00 2.87
474 487 3.606687 AGTGTTCACGGTGTTTTCTTCT 58.393 40.909 8.17 0.00 0.00 2.85
475 488 4.761975 AGTGTTCACGGTGTTTTCTTCTA 58.238 39.130 8.17 0.00 0.00 2.10
476 489 5.365619 AGTGTTCACGGTGTTTTCTTCTAT 58.634 37.500 8.17 0.00 0.00 1.98
477 490 6.518493 AGTGTTCACGGTGTTTTCTTCTATA 58.482 36.000 8.17 0.00 0.00 1.31
478 491 6.987992 AGTGTTCACGGTGTTTTCTTCTATAA 59.012 34.615 8.17 0.00 0.00 0.98
479 492 7.496591 AGTGTTCACGGTGTTTTCTTCTATAAA 59.503 33.333 8.17 0.00 0.00 1.40
480 493 8.124199 GTGTTCACGGTGTTTTCTTCTATAAAA 58.876 33.333 8.17 0.00 0.00 1.52
481 494 8.675504 TGTTCACGGTGTTTTCTTCTATAAAAA 58.324 29.630 8.17 0.00 0.00 1.94
503 516 7.683437 AAAAATACCAACAGGTTAGTCTAGC 57.317 36.000 0.00 0.00 36.84 3.42
504 517 5.354842 AATACCAACAGGTTAGTCTAGCC 57.645 43.478 4.61 4.61 36.84 3.93
505 518 2.903926 ACCAACAGGTTAGTCTAGCCT 58.096 47.619 9.39 9.39 40.31 4.58
512 525 3.995636 AGGTTAGTCTAGCCTGGATTGA 58.004 45.455 14.08 0.00 38.04 2.57
513 526 4.561752 AGGTTAGTCTAGCCTGGATTGAT 58.438 43.478 14.08 0.00 38.04 2.57
514 527 4.591072 AGGTTAGTCTAGCCTGGATTGATC 59.409 45.833 14.08 0.00 38.04 2.92
515 528 4.591072 GGTTAGTCTAGCCTGGATTGATCT 59.409 45.833 5.53 1.10 0.00 2.75
516 529 5.071115 GGTTAGTCTAGCCTGGATTGATCTT 59.929 44.000 5.53 0.00 0.00 2.40
517 530 6.408662 GGTTAGTCTAGCCTGGATTGATCTTT 60.409 42.308 5.53 0.00 0.00 2.52
518 531 5.707066 AGTCTAGCCTGGATTGATCTTTT 57.293 39.130 0.00 0.00 0.00 2.27
519 532 5.679601 AGTCTAGCCTGGATTGATCTTTTC 58.320 41.667 0.00 0.00 0.00 2.29
520 533 5.428131 AGTCTAGCCTGGATTGATCTTTTCT 59.572 40.000 0.00 0.00 0.00 2.52
521 534 6.069731 AGTCTAGCCTGGATTGATCTTTTCTT 60.070 38.462 0.00 0.00 0.00 2.52
522 535 6.601217 GTCTAGCCTGGATTGATCTTTTCTTT 59.399 38.462 0.00 0.00 0.00 2.52
523 536 7.121907 GTCTAGCCTGGATTGATCTTTTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
524 537 8.328758 TCTAGCCTGGATTGATCTTTTCTTTTA 58.671 33.333 0.00 0.00 0.00 1.52
525 538 7.968014 AGCCTGGATTGATCTTTTCTTTTAT 57.032 32.000 0.00 0.00 0.00 1.40
527 540 8.907885 AGCCTGGATTGATCTTTTCTTTTATAC 58.092 33.333 0.00 0.00 0.00 1.47
528 541 8.907885 GCCTGGATTGATCTTTTCTTTTATACT 58.092 33.333 0.00 0.00 0.00 2.12
625 638 1.006102 CCCGGATCGTCAGTATGGC 60.006 63.158 0.73 0.00 37.35 4.40
635 648 1.470098 GTCAGTATGGCCAGCAACTTG 59.530 52.381 13.05 9.55 31.80 3.16
648 661 3.030291 AGCAACTTGATTTGACCCAACA 58.970 40.909 0.00 0.00 0.00 3.33
701 714 4.035102 GCACCCCTGGTCCTGGTC 62.035 72.222 13.43 0.00 31.02 4.02
706 719 2.122729 CCTGGTCCTGGTCCTGGA 59.877 66.667 24.77 13.34 43.71 3.86
758 771 2.965572 CCTTTGGGGTAACATGCATG 57.034 50.000 25.09 25.09 39.74 4.06
760 773 1.549620 CTTTGGGGTAACATGCATGCA 59.450 47.619 26.53 25.04 39.74 3.96
783 796 6.294397 GCATGGAATCTGTTCTGAAGTTCTTT 60.294 38.462 4.17 0.00 34.68 2.52
834 1380 3.738830 TTACGTACCAGCACAAGAACT 57.261 42.857 0.00 0.00 0.00 3.01
835 1381 2.614829 ACGTACCAGCACAAGAACTT 57.385 45.000 0.00 0.00 0.00 2.66
890 1451 1.888512 TCTCAGCCAATCAAAAGCACC 59.111 47.619 0.00 0.00 0.00 5.01
893 1454 2.819608 TCAGCCAATCAAAAGCACCTAC 59.180 45.455 0.00 0.00 0.00 3.18
894 1455 1.812571 AGCCAATCAAAAGCACCTACG 59.187 47.619 0.00 0.00 0.00 3.51
895 1456 1.539827 GCCAATCAAAAGCACCTACGT 59.460 47.619 0.00 0.00 0.00 3.57
896 1457 2.745281 GCCAATCAAAAGCACCTACGTA 59.255 45.455 0.00 0.00 0.00 3.57
1052 1617 1.877165 GGCCGATCGAGGAAACGAC 60.877 63.158 18.66 0.00 44.84 4.34
1075 1640 1.802636 CTGGCGTGGGCATGTAAAG 59.197 57.895 0.00 0.00 42.47 1.85
1077 1642 1.377987 GGCGTGGGCATGTAAAGGA 60.378 57.895 0.00 0.00 42.47 3.36
1097 1662 0.476771 AAAAAGGGAGCCACGGAAGA 59.523 50.000 0.00 0.00 0.00 2.87
1124 1689 4.382754 CGTTCCACCAAAAGTACGTACTAC 59.617 45.833 27.59 16.95 34.99 2.73
1348 1931 0.321653 GGGAACATCAGCTGGACGTT 60.322 55.000 15.13 14.30 0.00 3.99
1399 1982 4.891727 CGATAGCCACGCCCGCTT 62.892 66.667 0.00 0.00 37.79 4.68
1501 3066 2.801631 GCTCCCCATCTCAGACGGG 61.802 68.421 0.00 0.00 39.92 5.28
1966 4316 2.625823 CGTGGGCCGAGCATTGTTT 61.626 57.895 0.00 0.00 39.56 2.83
2013 4753 2.520982 TCCCGAGCCCTCCGTATG 60.521 66.667 0.00 0.00 0.00 2.39
2225 5088 4.452733 CGACCTCGAGCCCCAACC 62.453 72.222 6.99 0.00 43.02 3.77
2227 5090 2.852075 ACCTCGAGCCCCAACCAA 60.852 61.111 6.99 0.00 0.00 3.67
2228 5091 2.045926 CCTCGAGCCCCAACCAAG 60.046 66.667 6.99 0.00 0.00 3.61
2230 5093 1.374947 CTCGAGCCCCAACCAAGAA 59.625 57.895 0.00 0.00 0.00 2.52
2231 5094 0.035056 CTCGAGCCCCAACCAAGAAT 60.035 55.000 0.00 0.00 0.00 2.40
2232 5095 0.322456 TCGAGCCCCAACCAAGAATG 60.322 55.000 0.00 0.00 0.00 2.67
2235 5098 1.546029 GAGCCCCAACCAAGAATGTTC 59.454 52.381 0.00 0.00 0.00 3.18
2237 5100 2.008242 CCCCAACCAAGAATGTTCCA 57.992 50.000 0.00 0.00 0.00 3.53
2240 5103 2.354003 CCCAACCAAGAATGTTCCATGC 60.354 50.000 0.00 0.00 0.00 4.06
2243 5106 3.159213 ACCAAGAATGTTCCATGCAGA 57.841 42.857 0.00 0.00 0.00 4.26
2244 5107 3.087031 ACCAAGAATGTTCCATGCAGAG 58.913 45.455 0.00 0.00 0.00 3.35
2245 5108 3.087031 CCAAGAATGTTCCATGCAGAGT 58.913 45.455 0.00 0.00 0.00 3.24
2246 5109 3.508793 CCAAGAATGTTCCATGCAGAGTT 59.491 43.478 0.00 0.00 0.00 3.01
2247 5110 4.021719 CCAAGAATGTTCCATGCAGAGTTT 60.022 41.667 0.00 0.00 0.00 2.66
2250 5113 7.067372 CCAAGAATGTTCCATGCAGAGTTTATA 59.933 37.037 0.00 0.00 0.00 0.98
2251 5114 7.798596 AGAATGTTCCATGCAGAGTTTATAG 57.201 36.000 0.00 0.00 0.00 1.31
2252 5115 7.341805 AGAATGTTCCATGCAGAGTTTATAGT 58.658 34.615 0.00 0.00 0.00 2.12
2256 5119 6.149308 TGTTCCATGCAGAGTTTATAGTTGTG 59.851 38.462 0.00 0.00 0.00 3.33
2258 5121 4.637534 CCATGCAGAGTTTATAGTTGTGCT 59.362 41.667 0.00 0.00 0.00 4.40
2272 5153 4.718961 AGTTGTGCTGTTAGATTTGGAGT 58.281 39.130 0.00 0.00 0.00 3.85
2406 5329 4.454678 GGTGGATCTGACATTGCTATTCA 58.545 43.478 0.00 0.00 0.00 2.57
2412 5349 5.929058 TCTGACATTGCTATTCAGAGAGT 57.071 39.130 14.18 0.00 40.65 3.24
2418 5357 7.663081 TGACATTGCTATTCAGAGAGTTTTTCT 59.337 33.333 0.00 0.00 39.43 2.52
2419 5358 8.401490 ACATTGCTATTCAGAGAGTTTTTCTT 57.599 30.769 0.00 0.00 35.87 2.52
2420 5359 9.507329 ACATTGCTATTCAGAGAGTTTTTCTTA 57.493 29.630 0.00 0.00 35.87 2.10
2479 5469 5.827797 TCCTTGCAGTTGTTTGATAGAAAGT 59.172 36.000 0.00 0.00 0.00 2.66
2540 5535 4.811557 GGATTACAGGTGTTGATCTACTGC 59.188 45.833 8.74 2.12 32.60 4.40
3413 6408 4.439974 GCATCAGCGGGAAATTTCACATTA 60.440 41.667 20.08 3.06 0.00 1.90
3752 6756 4.082190 CCTATGATGTACCCCGTCACTATG 60.082 50.000 0.00 0.00 41.79 2.23
3934 7105 5.108027 CGTTCGCCCTTAAACAAAATCAAAG 60.108 40.000 0.00 0.00 0.00 2.77
3935 7106 4.877282 TCGCCCTTAAACAAAATCAAAGG 58.123 39.130 0.00 0.00 37.13 3.11
3936 7107 3.431912 CGCCCTTAAACAAAATCAAAGGC 59.568 43.478 0.00 0.00 36.24 4.35
3943 7114 7.201461 CCTTAAACAAAATCAAAGGCATGATCG 60.201 37.037 0.00 2.41 39.08 3.69
3946 7117 4.460382 ACAAAATCAAAGGCATGATCGTCT 59.540 37.500 0.00 0.00 39.08 4.18
3950 7121 1.325640 CAAAGGCATGATCGTCTCGTG 59.674 52.381 0.00 5.84 42.79 4.35
3953 7124 0.924090 GGCATGATCGTCTCGTGTTC 59.076 55.000 0.00 2.70 42.05 3.18
3964 7135 3.370061 CGTCTCGTGTTCCCCTATTTTTC 59.630 47.826 0.00 0.00 0.00 2.29
3965 7136 4.576879 GTCTCGTGTTCCCCTATTTTTCT 58.423 43.478 0.00 0.00 0.00 2.52
3966 7137 5.001874 GTCTCGTGTTCCCCTATTTTTCTT 58.998 41.667 0.00 0.00 0.00 2.52
3969 7140 7.173735 GTCTCGTGTTCCCCTATTTTTCTTTTA 59.826 37.037 0.00 0.00 0.00 1.52
3970 7141 7.886446 TCTCGTGTTCCCCTATTTTTCTTTTAT 59.114 33.333 0.00 0.00 0.00 1.40
3971 7142 8.411991 TCGTGTTCCCCTATTTTTCTTTTATT 57.588 30.769 0.00 0.00 0.00 1.40
3972 7143 8.517056 TCGTGTTCCCCTATTTTTCTTTTATTC 58.483 33.333 0.00 0.00 0.00 1.75
3973 7144 8.301002 CGTGTTCCCCTATTTTTCTTTTATTCA 58.699 33.333 0.00 0.00 0.00 2.57
3976 7147 9.639601 GTTCCCCTATTTTTCTTTTATTCACTG 57.360 33.333 0.00 0.00 0.00 3.66
3989 7162 0.847373 TTCACTGTTTGGCCCACCTA 59.153 50.000 0.00 0.00 36.63 3.08
3997 7170 3.906846 TGTTTGGCCCACCTAATGAAAAT 59.093 39.130 0.00 0.00 33.13 1.82
4020 7193 5.808366 TGATAGGCCTATTGATTCGAAGT 57.192 39.130 26.13 0.00 0.00 3.01
4034 7207 5.479375 TGATTCGAAGTAAGTACAAGAGGGT 59.521 40.000 3.35 0.00 0.00 4.34
4036 7209 4.401022 TCGAAGTAAGTACAAGAGGGTCA 58.599 43.478 0.00 0.00 0.00 4.02
4041 7214 5.145564 AGTAAGTACAAGAGGGTCAGTCAA 58.854 41.667 0.00 0.00 0.00 3.18
4047 7220 3.265791 CAAGAGGGTCAGTCAATAGCAC 58.734 50.000 0.00 0.00 0.00 4.40
4052 7225 3.521126 AGGGTCAGTCAATAGCACATCTT 59.479 43.478 0.00 0.00 0.00 2.40
4053 7226 4.716784 AGGGTCAGTCAATAGCACATCTTA 59.283 41.667 0.00 0.00 0.00 2.10
4058 7231 8.125448 GGTCAGTCAATAGCACATCTTATTTTC 58.875 37.037 0.00 0.00 0.00 2.29
4059 7232 8.668353 GTCAGTCAATAGCACATCTTATTTTCA 58.332 33.333 0.00 0.00 0.00 2.69
4061 7234 7.912250 CAGTCAATAGCACATCTTATTTTCACC 59.088 37.037 0.00 0.00 0.00 4.02
4066 7241 4.702131 AGCACATCTTATTTTCACCACTCC 59.298 41.667 0.00 0.00 0.00 3.85
4089 7264 4.810491 CCAAAACTAAACAAGCAGCATTGT 59.190 37.500 0.00 0.00 45.18 2.71
4112 7287 1.734137 GCTATCGAGCCGTCTTCCA 59.266 57.895 0.00 0.00 43.49 3.53
4131 7306 2.423538 CCAATTCAATGGAACCCGTCTC 59.576 50.000 0.00 0.00 43.54 3.36
4132 7307 2.420058 ATTCAATGGAACCCGTCTCC 57.580 50.000 0.00 0.00 35.46 3.71
4145 7320 1.185618 CGTCTCCCCAGTCAACCAGA 61.186 60.000 0.00 0.00 0.00 3.86
4153 7328 3.498481 CCCCAGTCAACCAGAAAGATCAA 60.498 47.826 0.00 0.00 0.00 2.57
4161 7336 6.860023 GTCAACCAGAAAGATCAAGACAAATG 59.140 38.462 0.00 0.00 0.00 2.32
4166 7341 5.709164 CAGAAAGATCAAGACAAATGGACCT 59.291 40.000 0.00 0.00 0.00 3.85
4172 7347 3.907474 TCAAGACAAATGGACCTGTAGGA 59.093 43.478 4.64 0.00 38.94 2.94
4180 7355 7.000472 ACAAATGGACCTGTAGGATATCATTG 59.000 38.462 4.64 5.51 38.94 2.82
4181 7356 6.770286 AATGGACCTGTAGGATATCATTGT 57.230 37.500 4.64 0.00 38.94 2.71
4182 7357 5.808366 TGGACCTGTAGGATATCATTGTC 57.192 43.478 4.64 3.31 38.94 3.18
4184 7359 4.020128 GGACCTGTAGGATATCATTGTCCC 60.020 50.000 4.64 0.00 38.94 4.46
4185 7360 4.832492 ACCTGTAGGATATCATTGTCCCT 58.168 43.478 4.64 0.00 38.94 4.20
4186 7361 4.841246 ACCTGTAGGATATCATTGTCCCTC 59.159 45.833 4.64 0.00 38.94 4.30
4187 7362 4.223923 CCTGTAGGATATCATTGTCCCTCC 59.776 50.000 4.83 0.00 33.74 4.30
4188 7363 4.826616 TGTAGGATATCATTGTCCCTCCA 58.173 43.478 4.83 0.00 33.74 3.86
4189 7364 5.415065 TGTAGGATATCATTGTCCCTCCAT 58.585 41.667 4.83 0.00 33.74 3.41
4190 7365 5.851693 TGTAGGATATCATTGTCCCTCCATT 59.148 40.000 4.83 0.00 33.74 3.16
4191 7366 5.511386 AGGATATCATTGTCCCTCCATTC 57.489 43.478 4.83 0.00 33.74 2.67
4197 7372 0.999712 TTGTCCCTCCATTCCCTTCC 59.000 55.000 0.00 0.00 0.00 3.46
4198 7373 0.919289 TGTCCCTCCATTCCCTTCCC 60.919 60.000 0.00 0.00 0.00 3.97
4201 7376 0.921256 CCCTCCATTCCCTTCCCACT 60.921 60.000 0.00 0.00 0.00 4.00
4204 7379 2.629639 CCTCCATTCCCTTCCCACTAGA 60.630 54.545 0.00 0.00 0.00 2.43
4217 7403 7.288852 CCCTTCCCACTAGATATGATGTATAGG 59.711 44.444 0.00 0.00 0.00 2.57
4255 7447 2.238898 GGTACCACCATAAGCTGAGGTT 59.761 50.000 7.15 1.39 38.42 3.50
4260 7452 2.938956 CCATAAGCTGAGGTTAGGGG 57.061 55.000 23.13 16.08 41.69 4.79
4261 7453 2.127708 CCATAAGCTGAGGTTAGGGGT 58.872 52.381 23.13 0.00 41.69 4.95
4262 7454 2.158755 CCATAAGCTGAGGTTAGGGGTG 60.159 54.545 23.13 10.57 41.69 4.61
4264 7456 1.208165 AAGCTGAGGTTAGGGGTGGG 61.208 60.000 0.00 0.00 0.00 4.61
4266 7458 2.001269 CTGAGGTTAGGGGTGGGGG 61.001 68.421 0.00 0.00 0.00 5.40
4281 7473 3.012722 GGGGACGGGGGTGATGAA 61.013 66.667 0.00 0.00 0.00 2.57
4282 7474 2.590092 GGGACGGGGGTGATGAAG 59.410 66.667 0.00 0.00 0.00 3.02
4283 7475 2.124695 GGACGGGGGTGATGAAGC 60.125 66.667 0.00 0.00 0.00 3.86
4284 7476 2.670148 GGACGGGGGTGATGAAGCT 61.670 63.158 0.00 0.00 0.00 3.74
4285 7477 1.299976 GACGGGGGTGATGAAGCTT 59.700 57.895 0.00 0.00 0.00 3.74
4286 7478 0.744771 GACGGGGGTGATGAAGCTTC 60.745 60.000 19.89 19.89 0.00 3.86
4287 7479 1.299648 CGGGGGTGATGAAGCTTCA 59.700 57.895 30.23 30.23 42.14 3.02
4288 7480 1.026718 CGGGGGTGATGAAGCTTCAC 61.027 60.000 30.66 22.67 40.49 3.18
4302 7497 5.011635 TGAAGCTTCACTGTGTATGGTCTTA 59.988 40.000 25.16 0.00 31.01 2.10
4311 7506 8.704668 TCACTGTGTATGGTCTTATCAATACAT 58.295 33.333 7.79 0.00 0.00 2.29
4312 7507 8.768019 CACTGTGTATGGTCTTATCAATACATG 58.232 37.037 0.00 0.00 0.00 3.21
4351 7546 6.212888 AGGAATTTCAATTGCGCTTCTATT 57.787 33.333 9.73 0.16 41.03 1.73
4353 7548 5.172053 GGAATTTCAATTGCGCTTCTATTCG 59.828 40.000 9.73 0.00 0.00 3.34
4359 7554 1.629013 TGCGCTTCTATTCGTCACTG 58.371 50.000 9.73 0.00 0.00 3.66
4366 7561 4.734108 GCTTCTATTCGTCACTGTAGGACC 60.734 50.000 0.00 0.00 31.55 4.46
4388 7583 3.561143 TGGGTTCAAGCAGCTTTCTTTA 58.439 40.909 4.38 0.00 0.00 1.85
4440 7643 6.803154 AGAAAACAGTGTACCTTGATAAGC 57.197 37.500 0.00 0.00 0.00 3.09
4449 7652 7.489757 CAGTGTACCTTGATAAGCTTAACTCTC 59.510 40.741 10.85 4.06 0.00 3.20
4468 7954 7.216973 ACTCTCAAGTACTAACTTACCAGTG 57.783 40.000 0.00 0.00 44.28 3.66
4471 7957 3.863142 AGTACTAACTTACCAGTGCCG 57.137 47.619 0.00 0.00 31.60 5.69
4489 7985 1.987770 CCGCAGCAAAAGCTACAATTG 59.012 47.619 3.24 3.24 0.00 2.32
4545 8094 6.209788 CCCCCTCTGAATCTGTAGTATACTTC 59.790 46.154 11.40 6.63 43.54 3.01
4558 8107 8.288689 TGTAGTATACTTCTGTATGACTTGCA 57.711 34.615 11.40 0.00 43.54 4.08
4559 8108 8.914011 TGTAGTATACTTCTGTATGACTTGCAT 58.086 33.333 11.40 0.00 43.54 3.96
4560 8109 9.751542 GTAGTATACTTCTGTATGACTTGCATT 57.248 33.333 11.40 0.00 39.49 3.56
4564 8113 5.798132 ACTTCTGTATGACTTGCATTCTCA 58.202 37.500 0.00 0.00 38.44 3.27
4586 8135 7.125811 TCTCAGGTGATTAATAGTTTAGCCTGT 59.874 37.037 0.00 0.00 41.06 4.00
4647 8225 3.827722 CCTGTACTCCAAAGTTTCCCAA 58.172 45.455 0.00 0.00 36.92 4.12
4650 8228 4.457466 TGTACTCCAAAGTTTCCCAACTC 58.543 43.478 0.00 0.00 42.89 3.01
4651 8229 3.662759 ACTCCAAAGTTTCCCAACTCA 57.337 42.857 0.00 0.00 42.89 3.41
4652 8230 3.288092 ACTCCAAAGTTTCCCAACTCAC 58.712 45.455 0.00 0.00 42.89 3.51
4653 8231 3.053619 ACTCCAAAGTTTCCCAACTCACT 60.054 43.478 0.00 0.00 42.89 3.41
4712 8290 5.989168 TGTAGGTGATATAACAATCTTGGCG 59.011 40.000 0.00 0.00 0.00 5.69
4730 8308 2.159198 GGCGAACCGTTCTTCCTATGTA 60.159 50.000 9.55 0.00 0.00 2.29
4815 8393 3.008813 ACAGAAGACTGCATGGACATTCT 59.991 43.478 0.00 0.00 46.95 2.40
4863 8441 1.755200 AGGAACTGGGGCCTTCTTTA 58.245 50.000 0.84 0.00 37.18 1.85
5399 8977 4.165779 GTTATGTGAGTGCCATTTTTCCG 58.834 43.478 0.00 0.00 0.00 4.30
5408 8987 2.223923 TGCCATTTTTCCGGTTGTTGAG 60.224 45.455 0.00 0.00 0.00 3.02
5422 9001 3.712016 TGTTGAGCAGTAGCCCATTTA 57.288 42.857 0.00 0.00 43.56 1.40
5609 9234 4.092821 TGTCGTATGTGAACATGCTAAAGC 59.907 41.667 6.19 0.00 36.91 3.51
5610 9235 3.621268 TCGTATGTGAACATGCTAAAGCC 59.379 43.478 6.19 0.00 41.18 4.35
5611 9236 3.623060 CGTATGTGAACATGCTAAAGCCT 59.377 43.478 6.19 0.00 41.18 4.58
5612 9237 4.808895 CGTATGTGAACATGCTAAAGCCTA 59.191 41.667 6.19 0.00 41.18 3.93
5613 9238 5.293324 CGTATGTGAACATGCTAAAGCCTAA 59.707 40.000 6.19 0.00 41.18 2.69
5614 9239 6.183360 CGTATGTGAACATGCTAAAGCCTAAA 60.183 38.462 6.19 0.00 41.18 1.85
5615 9240 5.627499 TGTGAACATGCTAAAGCCTAAAG 57.373 39.130 0.00 0.00 41.18 1.85
5616 9241 4.458989 TGTGAACATGCTAAAGCCTAAAGG 59.541 41.667 0.00 0.00 41.18 3.11
5617 9242 4.016444 TGAACATGCTAAAGCCTAAAGGG 58.984 43.478 0.00 0.00 41.18 3.95
5677 9310 1.097547 GCACGATCATGTTCTGGGGG 61.098 60.000 2.44 0.00 0.00 5.40
5910 9734 8.933807 CATGAGTGATTAATATTACTGCCTCAG 58.066 37.037 14.45 0.00 31.35 3.35
5915 9739 8.338259 GTGATTAATATTACTGCCTCAGTGTTG 58.662 37.037 9.52 0.00 45.01 3.33
5985 9816 7.898014 ATGACAGACTTGTATATCACCACTA 57.102 36.000 0.00 0.00 37.76 2.74
5989 9820 8.135382 ACAGACTTGTATATCACCACTAAAGT 57.865 34.615 0.00 0.00 35.25 2.66
6007 9839 7.821359 CACTAAAGTCTTTTCTGATCCTCATCA 59.179 37.037 2.51 0.00 36.62 3.07
6173 10005 0.316204 CCCAAACTTCAAGCAGCCTG 59.684 55.000 0.00 0.00 0.00 4.85
6189 10021 1.541147 GCCTGACATTGCACAGCTTTA 59.459 47.619 0.00 0.00 33.40 1.85
6289 10121 4.024133 CCGACATGAATTCAACAGTGACAA 60.024 41.667 13.09 0.00 31.90 3.18
6419 10251 0.389948 GTAGTGCAGTTGAGACCCCG 60.390 60.000 0.00 0.00 0.00 5.73
6521 10353 1.988956 AGGCAGGGAGCTCTCAGTG 60.989 63.158 17.82 7.48 44.79 3.66
6590 10426 4.848357 AGCAAAATAGAGCAGCTTCCTTA 58.152 39.130 0.00 0.00 29.98 2.69
6691 10529 6.533730 TGATCGCTGGGATTTAGTTATTCAT 58.466 36.000 8.71 0.00 34.82 2.57
6692 10530 6.998074 TGATCGCTGGGATTTAGTTATTCATT 59.002 34.615 8.71 0.00 34.82 2.57
6724 10562 8.542497 TGTCTGTACATGTTTACAGTTTATCC 57.458 34.615 22.26 9.72 46.27 2.59
6881 10721 7.147915 CCCCCTCAAAATTCGAAGAAATTATCA 60.148 37.037 3.35 0.00 45.90 2.15
6893 10733 6.619854 CGAAGAAATTATCAAATGACGTCGTC 59.380 38.462 18.51 18.51 33.32 4.20
6927 10767 4.083110 CCACCTGATGCTGTTTTTCAGTAG 60.083 45.833 0.00 0.00 45.23 2.57
6928 10768 4.516698 CACCTGATGCTGTTTTTCAGTAGT 59.483 41.667 0.00 0.00 45.23 2.73
6929 10769 5.700832 CACCTGATGCTGTTTTTCAGTAGTA 59.299 40.000 0.00 0.00 45.23 1.82
6938 10778 6.910972 GCTGTTTTTCAGTAGTACTGGTTTTC 59.089 38.462 26.30 15.88 45.94 2.29
6947 10787 7.612633 TCAGTAGTACTGGTTTTCCTTGTTTTT 59.387 33.333 26.30 0.00 45.94 1.94
7013 10854 1.598924 GCACTGTCACTGCTTGCTTTC 60.599 52.381 0.00 0.00 0.00 2.62
7144 10985 1.007964 CGAATGCAAAACCCGCACA 60.008 52.632 0.00 0.00 43.35 4.57
7147 10988 1.460359 GAATGCAAAACCCGCACATTG 59.540 47.619 0.00 0.00 43.35 2.82
7211 11057 2.730928 CGCGCAACCAATCAAATTCTTT 59.269 40.909 8.75 0.00 0.00 2.52
7212 11058 3.422085 CGCGCAACCAATCAAATTCTTTG 60.422 43.478 8.75 0.00 41.96 2.77
7254 11136 1.444895 CGCCCAAGCAATTGACTGC 60.445 57.895 10.34 5.33 42.97 4.40
7321 11203 2.806237 CGCTCGTCCCTACCTTCC 59.194 66.667 0.00 0.00 0.00 3.46
7326 11208 2.108168 CTCGTCCCTACCTTCCATTCA 58.892 52.381 0.00 0.00 0.00 2.57
7332 11214 2.107204 CCCTACCTTCCATTCATCCTGG 59.893 54.545 0.00 0.00 34.93 4.45
7336 11218 1.303309 CTTCCATTCATCCTGGTCGC 58.697 55.000 0.00 0.00 35.19 5.19
7338 11220 0.982852 TCCATTCATCCTGGTCGCCT 60.983 55.000 0.00 0.00 35.19 5.52
7340 11222 1.019673 CATTCATCCTGGTCGCCTTG 58.980 55.000 0.00 0.00 0.00 3.61
7352 11234 3.752339 GCCTTGGCCGCCTTCTTG 61.752 66.667 11.61 0.00 0.00 3.02
7358 11240 3.423154 GCCGCCTTCTTGACCGTG 61.423 66.667 0.00 0.00 0.00 4.94
7361 11243 2.027625 CGCCTTCTTGACCGTGACC 61.028 63.158 0.00 0.00 0.00 4.02
7523 11414 4.363990 CTGCAGCACGACTCCGGT 62.364 66.667 0.00 0.00 40.78 5.28
7606 11507 1.928653 CGGCTCGTTTCGTTTGACA 59.071 52.632 0.00 0.00 0.00 3.58
7611 11515 2.475111 GCTCGTTTCGTTTGACATCTCA 59.525 45.455 0.00 0.00 0.00 3.27
7642 11578 1.233950 ATGGTCGTGATTGCGTTGCA 61.234 50.000 0.00 0.00 36.47 4.08
7664 11600 3.571119 GCGTTGCAGCTGATGACT 58.429 55.556 20.43 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.785982 GAGGCTAAAGAGAAGACCATTTATAAT 57.214 33.333 0.00 0.00 0.00 1.28
12 13 8.768397 TGAGGCTAAAGAGAAGACCATTTATAA 58.232 33.333 0.00 0.00 0.00 0.98
13 14 8.319057 TGAGGCTAAAGAGAAGACCATTTATA 57.681 34.615 0.00 0.00 0.00 0.98
14 15 7.200434 TGAGGCTAAAGAGAAGACCATTTAT 57.800 36.000 0.00 0.00 0.00 1.40
15 16 6.352222 CCTGAGGCTAAAGAGAAGACCATTTA 60.352 42.308 0.00 0.00 0.00 1.40
16 17 5.495640 CTGAGGCTAAAGAGAAGACCATTT 58.504 41.667 0.00 0.00 0.00 2.32
17 18 4.080638 CCTGAGGCTAAAGAGAAGACCATT 60.081 45.833 0.00 0.00 0.00 3.16
18 19 3.454082 CCTGAGGCTAAAGAGAAGACCAT 59.546 47.826 0.00 0.00 0.00 3.55
19 20 2.834549 CCTGAGGCTAAAGAGAAGACCA 59.165 50.000 0.00 0.00 0.00 4.02
39 40 1.202211 ACGTTTGCTTGGTTTTCGTCC 60.202 47.619 0.00 0.00 0.00 4.79
114 120 1.745320 ATCCTATCACGCGGTGGGTC 61.745 60.000 12.47 0.00 33.87 4.46
135 147 1.134699 TGTGGATGCGAAGGAAGCTAG 60.135 52.381 0.00 0.00 35.28 3.42
147 160 2.123428 GCAGGGGATGTGTGGATGC 61.123 63.158 0.00 0.00 0.00 3.91
149 162 1.422781 CATAGCAGGGGATGTGTGGAT 59.577 52.381 0.00 0.00 0.00 3.41
158 171 1.292242 AGAGAACCTCATAGCAGGGGA 59.708 52.381 0.00 0.00 37.96 4.81
167 180 5.825593 TGGTCACTTAAAGAGAACCTCAT 57.174 39.130 0.00 0.00 36.40 2.90
171 184 8.459635 GGAATTAATGGTCACTTAAAGAGAACC 58.540 37.037 0.00 0.00 36.16 3.62
172 185 8.459635 GGGAATTAATGGTCACTTAAAGAGAAC 58.540 37.037 0.00 0.00 0.00 3.01
174 187 7.116736 GGGGAATTAATGGTCACTTAAAGAGA 58.883 38.462 0.00 0.00 0.00 3.10
179 192 5.182169 ACGGGGAATTAATGGTCACTTAA 57.818 39.130 0.00 0.00 0.00 1.85
181 194 3.617284 GACGGGGAATTAATGGTCACTT 58.383 45.455 0.00 0.00 0.00 3.16
182 195 2.419574 CGACGGGGAATTAATGGTCACT 60.420 50.000 0.00 0.00 0.00 3.41
279 292 0.671163 ATTCAAGCCCGTTTACGCGA 60.671 50.000 15.93 0.00 38.18 5.87
291 304 8.644318 ATTAATTTGCTGATGAGAATTCAAGC 57.356 30.769 8.44 8.81 37.58 4.01
328 341 2.811410 TCCTACCGCTGGAGTTTTCTA 58.189 47.619 1.50 0.00 0.00 2.10
346 359 8.021973 CGAATGGAGTACTACATATACTGTTCC 58.978 40.741 21.11 1.54 39.39 3.62
357 370 2.762327 GGTTCCCGAATGGAGTACTACA 59.238 50.000 11.02 11.02 46.24 2.74
373 386 0.107654 ACCAAGCTATGCTCGGTTCC 60.108 55.000 0.00 0.00 44.32 3.62
374 387 3.460648 ACCAAGCTATGCTCGGTTC 57.539 52.632 0.00 0.00 44.32 3.62
375 388 3.957288 AACCAAGCTATGCTCGGTT 57.043 47.368 8.90 8.90 44.32 4.44
377 390 1.718757 GCCAACCAAGCTATGCTCGG 61.719 60.000 0.00 0.00 38.93 4.63
378 391 1.026182 TGCCAACCAAGCTATGCTCG 61.026 55.000 0.00 0.00 38.25 5.03
379 392 1.135286 GTTGCCAACCAAGCTATGCTC 60.135 52.381 0.00 0.00 38.25 4.26
380 393 0.890683 GTTGCCAACCAAGCTATGCT 59.109 50.000 0.00 0.00 42.56 3.79
381 394 0.456653 CGTTGCCAACCAAGCTATGC 60.457 55.000 1.21 0.00 33.21 3.14
382 395 0.456653 GCGTTGCCAACCAAGCTATG 60.457 55.000 1.21 0.00 33.21 2.23
383 396 0.893270 TGCGTTGCCAACCAAGCTAT 60.893 50.000 1.21 0.00 33.21 2.97
384 397 1.527148 TGCGTTGCCAACCAAGCTA 60.527 52.632 1.21 0.00 33.21 3.32
385 398 2.832661 TGCGTTGCCAACCAAGCT 60.833 55.556 1.21 0.00 33.21 3.74
386 399 2.658268 GTGCGTTGCCAACCAAGC 60.658 61.111 1.21 0.39 33.21 4.01
387 400 2.353376 CGTGCGTTGCCAACCAAG 60.353 61.111 1.21 0.31 33.21 3.61
388 401 3.893763 CCGTGCGTTGCCAACCAA 61.894 61.111 1.21 0.00 0.00 3.67
391 404 4.025401 CTCCCGTGCGTTGCCAAC 62.025 66.667 0.00 0.00 0.00 3.77
392 405 4.555709 ACTCCCGTGCGTTGCCAA 62.556 61.111 0.00 0.00 0.00 4.52
393 406 4.555709 AACTCCCGTGCGTTGCCA 62.556 61.111 0.00 0.00 0.00 4.92
394 407 3.284449 AAACTCCCGTGCGTTGCC 61.284 61.111 0.00 0.00 0.00 4.52
395 408 2.051345 CAAACTCCCGTGCGTTGC 60.051 61.111 0.00 0.00 0.00 4.17
396 409 2.051345 GCAAACTCCCGTGCGTTG 60.051 61.111 0.00 0.00 0.00 4.10
397 410 2.515057 TGCAAACTCCCGTGCGTT 60.515 55.556 0.00 0.00 43.93 4.84
398 411 2.972505 CTGCAAACTCCCGTGCGT 60.973 61.111 0.00 0.00 43.93 5.24
399 412 4.389576 GCTGCAAACTCCCGTGCG 62.390 66.667 0.00 0.00 43.93 5.34
400 413 4.043200 GGCTGCAAACTCCCGTGC 62.043 66.667 0.50 0.00 41.29 5.34
401 414 2.594303 TGGCTGCAAACTCCCGTG 60.594 61.111 0.50 0.00 0.00 4.94
402 415 2.281761 CTGGCTGCAAACTCCCGT 60.282 61.111 0.50 0.00 0.00 5.28
403 416 3.741476 GCTGGCTGCAAACTCCCG 61.741 66.667 11.80 0.00 42.31 5.14
404 417 2.484287 TAGGCTGGCTGCAAACTCCC 62.484 60.000 18.32 0.00 45.15 4.30
405 418 0.394899 ATAGGCTGGCTGCAAACTCC 60.395 55.000 18.32 0.00 45.15 3.85
406 419 1.020437 GATAGGCTGGCTGCAAACTC 58.980 55.000 18.32 5.39 45.15 3.01
407 420 0.329261 TGATAGGCTGGCTGCAAACT 59.671 50.000 18.32 8.57 45.15 2.66
408 421 0.737219 CTGATAGGCTGGCTGCAAAC 59.263 55.000 18.32 5.17 45.15 2.93
409 422 0.329261 ACTGATAGGCTGGCTGCAAA 59.671 50.000 18.32 5.56 45.15 3.68
410 423 0.393402 CACTGATAGGCTGGCTGCAA 60.393 55.000 18.32 5.93 45.15 4.08
411 424 1.222661 CACTGATAGGCTGGCTGCA 59.777 57.895 18.32 10.76 45.15 4.41
412 425 0.393537 AACACTGATAGGCTGGCTGC 60.394 55.000 14.70 7.96 41.94 5.25
413 426 1.065926 TGAACACTGATAGGCTGGCTG 60.066 52.381 14.70 0.00 0.00 4.85
414 427 1.279496 TGAACACTGATAGGCTGGCT 58.721 50.000 9.28 9.28 0.00 4.75
415 428 2.012673 CTTGAACACTGATAGGCTGGC 58.987 52.381 0.00 0.00 0.00 4.85
416 429 3.055530 AGACTTGAACACTGATAGGCTGG 60.056 47.826 0.00 0.00 0.00 4.85
417 430 4.180057 GAGACTTGAACACTGATAGGCTG 58.820 47.826 0.00 0.00 0.00 4.85
418 431 3.834813 TGAGACTTGAACACTGATAGGCT 59.165 43.478 0.00 0.00 0.00 4.58
419 432 4.180057 CTGAGACTTGAACACTGATAGGC 58.820 47.826 0.00 0.00 0.00 3.93
420 433 4.081752 AGCTGAGACTTGAACACTGATAGG 60.082 45.833 0.00 0.00 0.00 2.57
421 434 5.070770 AGCTGAGACTTGAACACTGATAG 57.929 43.478 0.00 0.00 0.00 2.08
422 435 5.474578 AAGCTGAGACTTGAACACTGATA 57.525 39.130 0.00 0.00 0.00 2.15
423 436 4.348863 AAGCTGAGACTTGAACACTGAT 57.651 40.909 0.00 0.00 0.00 2.90
424 437 3.827008 AAGCTGAGACTTGAACACTGA 57.173 42.857 0.00 0.00 0.00 3.41
425 438 4.084118 GCTTAAGCTGAGACTTGAACACTG 60.084 45.833 20.38 0.00 38.21 3.66
426 439 4.061596 GCTTAAGCTGAGACTTGAACACT 58.938 43.478 20.38 0.00 38.21 3.55
427 440 3.120854 CGCTTAAGCTGAGACTTGAACAC 60.121 47.826 24.33 0.00 39.32 3.32
428 441 3.059884 CGCTTAAGCTGAGACTTGAACA 58.940 45.455 24.33 0.00 39.32 3.18
429 442 3.060602 ACGCTTAAGCTGAGACTTGAAC 58.939 45.455 24.33 0.00 39.32 3.18
430 443 3.386768 ACGCTTAAGCTGAGACTTGAA 57.613 42.857 24.33 0.00 39.32 2.69
431 444 3.386768 AACGCTTAAGCTGAGACTTGA 57.613 42.857 24.33 0.00 39.32 3.02
432 445 4.686554 ACTAAACGCTTAAGCTGAGACTTG 59.313 41.667 24.33 9.26 39.32 3.16
433 446 4.686554 CACTAAACGCTTAAGCTGAGACTT 59.313 41.667 24.33 10.72 39.32 3.01
434 447 4.238514 CACTAAACGCTTAAGCTGAGACT 58.761 43.478 24.33 6.29 39.32 3.24
435 448 3.988517 ACACTAAACGCTTAAGCTGAGAC 59.011 43.478 24.33 0.00 39.32 3.36
436 449 4.252971 ACACTAAACGCTTAAGCTGAGA 57.747 40.909 24.33 7.27 39.32 3.27
437 450 4.447724 TGAACACTAAACGCTTAAGCTGAG 59.552 41.667 24.33 16.77 39.32 3.35
438 451 4.210537 GTGAACACTAAACGCTTAAGCTGA 59.789 41.667 24.33 6.59 39.32 4.26
439 452 4.455124 GTGAACACTAAACGCTTAAGCTG 58.545 43.478 24.33 19.09 39.32 4.24
440 453 3.183775 CGTGAACACTAAACGCTTAAGCT 59.816 43.478 24.33 9.29 39.32 3.74
441 454 3.466836 CGTGAACACTAAACGCTTAAGC 58.533 45.455 17.83 17.83 37.78 3.09
442 455 3.492011 ACCGTGAACACTAAACGCTTAAG 59.508 43.478 0.00 0.00 36.02 1.85
443 456 3.245754 CACCGTGAACACTAAACGCTTAA 59.754 43.478 0.00 0.00 36.02 1.85
444 457 2.796031 CACCGTGAACACTAAACGCTTA 59.204 45.455 0.00 0.00 36.02 3.09
445 458 1.595794 CACCGTGAACACTAAACGCTT 59.404 47.619 0.00 0.00 36.02 4.68
446 459 1.214367 CACCGTGAACACTAAACGCT 58.786 50.000 0.00 0.00 36.02 5.07
447 460 0.932399 ACACCGTGAACACTAAACGC 59.068 50.000 5.28 0.00 36.02 4.84
448 461 3.661758 AAACACCGTGAACACTAAACG 57.338 42.857 5.28 0.00 37.07 3.60
449 462 5.225899 AGAAAACACCGTGAACACTAAAC 57.774 39.130 5.28 0.00 0.00 2.01
450 463 5.644636 AGAAGAAAACACCGTGAACACTAAA 59.355 36.000 5.28 0.00 0.00 1.85
451 464 5.180271 AGAAGAAAACACCGTGAACACTAA 58.820 37.500 5.28 0.00 0.00 2.24
452 465 4.761975 AGAAGAAAACACCGTGAACACTA 58.238 39.130 5.28 0.00 0.00 2.74
453 466 3.606687 AGAAGAAAACACCGTGAACACT 58.393 40.909 5.28 0.00 0.00 3.55
454 467 5.668558 ATAGAAGAAAACACCGTGAACAC 57.331 39.130 5.28 0.00 0.00 3.32
455 468 7.789273 TTTATAGAAGAAAACACCGTGAACA 57.211 32.000 5.28 0.00 0.00 3.18
486 499 3.252974 CAGGCTAGACTAACCTGTTGG 57.747 52.381 19.82 0.00 44.91 3.77
491 504 3.995636 TCAATCCAGGCTAGACTAACCT 58.004 45.455 0.00 0.00 0.00 3.50
492 505 4.591072 AGATCAATCCAGGCTAGACTAACC 59.409 45.833 0.00 0.00 0.00 2.85
493 506 5.799827 AGATCAATCCAGGCTAGACTAAC 57.200 43.478 0.00 0.00 0.00 2.34
494 507 6.814954 AAAGATCAATCCAGGCTAGACTAA 57.185 37.500 0.00 0.00 0.00 2.24
495 508 6.613271 AGAAAAGATCAATCCAGGCTAGACTA 59.387 38.462 0.00 0.00 0.00 2.59
496 509 5.428131 AGAAAAGATCAATCCAGGCTAGACT 59.572 40.000 0.00 0.00 0.00 3.24
497 510 5.679601 AGAAAAGATCAATCCAGGCTAGAC 58.320 41.667 0.00 0.00 0.00 2.59
498 511 5.965033 AGAAAAGATCAATCCAGGCTAGA 57.035 39.130 0.00 0.00 0.00 2.43
499 512 7.401955 AAAAGAAAAGATCAATCCAGGCTAG 57.598 36.000 0.00 0.00 0.00 3.42
501 514 7.968014 ATAAAAGAAAAGATCAATCCAGGCT 57.032 32.000 0.00 0.00 0.00 4.58
502 515 8.907885 AGTATAAAAGAAAAGATCAATCCAGGC 58.092 33.333 0.00 0.00 0.00 4.85
513 526 9.998106 AGCTCAACAGTAGTATAAAAGAAAAGA 57.002 29.630 0.00 0.00 0.00 2.52
515 528 9.772973 TCAGCTCAACAGTAGTATAAAAGAAAA 57.227 29.630 0.00 0.00 0.00 2.29
516 529 9.772973 TTCAGCTCAACAGTAGTATAAAAGAAA 57.227 29.630 0.00 0.00 0.00 2.52
517 530 9.944376 ATTCAGCTCAACAGTAGTATAAAAGAA 57.056 29.630 0.00 0.00 0.00 2.52
625 638 1.962807 TGGGTCAAATCAAGTTGCTGG 59.037 47.619 0.00 0.00 0.00 4.85
635 648 0.521735 GGAGCGTGTTGGGTCAAATC 59.478 55.000 0.00 0.00 36.17 2.17
706 719 2.289569 ACAAATGCAATCCATGGCGTTT 60.290 40.909 6.96 6.46 46.87 3.60
718 731 4.343526 AGGTGTGACCATAAACAAATGCAA 59.656 37.500 0.00 0.00 41.95 4.08
758 771 4.699257 AGAACTTCAGAACAGATTCCATGC 59.301 41.667 0.00 0.00 35.18 4.06
760 773 7.830099 AAAAGAACTTCAGAACAGATTCCAT 57.170 32.000 0.00 0.00 35.18 3.41
783 796 5.385198 AGTGCTCCCTAATGAACAAGAAAA 58.615 37.500 0.00 0.00 0.00 2.29
787 800 4.187694 GAGAGTGCTCCCTAATGAACAAG 58.812 47.826 0.00 0.00 35.01 3.16
834 1380 3.560896 GGCGTGGTCAAGTTAACTAACAA 59.439 43.478 8.92 1.28 38.62 2.83
835 1381 3.132925 GGCGTGGTCAAGTTAACTAACA 58.867 45.455 8.92 0.00 38.62 2.41
837 1383 3.472283 TGGCGTGGTCAAGTTAACTAA 57.528 42.857 8.92 0.00 0.00 2.24
838 1384 3.592059 GATGGCGTGGTCAAGTTAACTA 58.408 45.455 8.92 0.00 0.00 2.24
890 1451 5.813717 TCCAATCATACTTGTCGTACGTAG 58.186 41.667 16.05 13.19 0.00 3.51
893 1454 4.916870 TCTCCAATCATACTTGTCGTACG 58.083 43.478 9.53 9.53 0.00 3.67
894 1455 7.042658 GGAATTCTCCAATCATACTTGTCGTAC 60.043 40.741 5.23 0.00 41.96 3.67
895 1456 6.984474 GGAATTCTCCAATCATACTTGTCGTA 59.016 38.462 5.23 0.00 41.96 3.43
896 1457 5.817816 GGAATTCTCCAATCATACTTGTCGT 59.182 40.000 5.23 0.00 41.96 4.34
1041 1606 1.291877 CCAGCCAAGTCGTTTCCTCG 61.292 60.000 0.00 0.00 0.00 4.63
1097 1662 2.291365 GTACTTTTGGTGGAACGGTGT 58.709 47.619 0.00 0.00 38.12 4.16
1103 1668 4.545610 CGTAGTACGTACTTTTGGTGGAA 58.454 43.478 31.58 9.15 36.74 3.53
1124 1689 0.249031 TCGTCATGGATGCTAGCACG 60.249 55.000 22.07 17.02 0.00 5.34
1126 1691 0.249031 CGTCGTCATGGATGCTAGCA 60.249 55.000 21.85 21.85 0.00 3.49
1127 1692 0.941463 CCGTCGTCATGGATGCTAGC 60.941 60.000 8.10 8.10 0.00 3.42
1162 1742 4.554036 GCATGGAGGCCCGGAGAC 62.554 72.222 0.73 0.00 34.29 3.36
1201 1781 1.893919 AAGCAAGAGGACGAGGAGGC 61.894 60.000 0.00 0.00 0.00 4.70
1348 1931 3.473647 CGAGGGCCAGCTCCATGA 61.474 66.667 6.18 0.00 0.00 3.07
1986 4725 2.240160 GAGGGCTCGGGAGATATAGAGA 59.760 54.545 0.00 0.00 38.80 3.10
1991 4730 1.304547 CGGAGGGCTCGGGAGATAT 60.305 63.158 0.00 0.00 38.80 1.63
1993 4732 2.082836 ATACGGAGGGCTCGGGAGAT 62.083 60.000 0.00 0.00 38.80 2.75
2031 4771 2.645192 CGGGGGAAATGGCAACCAC 61.645 63.158 0.00 0.00 35.80 4.16
2032 4772 2.283532 CGGGGGAAATGGCAACCA 60.284 61.111 0.00 0.00 38.19 3.67
2232 5095 6.546395 CACAACTATAAACTCTGCATGGAAC 58.454 40.000 0.00 0.00 0.00 3.62
2235 5098 4.637534 AGCACAACTATAAACTCTGCATGG 59.362 41.667 0.00 0.00 0.00 3.66
2237 5100 5.248640 ACAGCACAACTATAAACTCTGCAT 58.751 37.500 0.00 0.00 0.00 3.96
2240 5103 8.709386 ATCTAACAGCACAACTATAAACTCTG 57.291 34.615 0.00 0.00 0.00 3.35
2243 5106 8.730680 CCAAATCTAACAGCACAACTATAAACT 58.269 33.333 0.00 0.00 0.00 2.66
2244 5107 8.726988 TCCAAATCTAACAGCACAACTATAAAC 58.273 33.333 0.00 0.00 0.00 2.01
2245 5108 8.856153 TCCAAATCTAACAGCACAACTATAAA 57.144 30.769 0.00 0.00 0.00 1.40
2246 5109 8.100791 ACTCCAAATCTAACAGCACAACTATAA 58.899 33.333 0.00 0.00 0.00 0.98
2247 5110 7.620880 ACTCCAAATCTAACAGCACAACTATA 58.379 34.615 0.00 0.00 0.00 1.31
2250 5113 4.718961 ACTCCAAATCTAACAGCACAACT 58.281 39.130 0.00 0.00 0.00 3.16
2251 5114 5.215160 CAACTCCAAATCTAACAGCACAAC 58.785 41.667 0.00 0.00 0.00 3.32
2252 5115 4.278170 CCAACTCCAAATCTAACAGCACAA 59.722 41.667 0.00 0.00 0.00 3.33
2256 5119 3.127721 GCTCCAACTCCAAATCTAACAGC 59.872 47.826 0.00 0.00 0.00 4.40
2258 5121 4.365514 TGCTCCAACTCCAAATCTAACA 57.634 40.909 0.00 0.00 0.00 2.41
2272 5153 4.565166 CGTCAAACTCGTATTATGCTCCAA 59.435 41.667 0.00 0.00 0.00 3.53
2436 5375 6.961554 GCAAGGAAAACGTACTCATTCATAAG 59.038 38.462 0.00 0.00 0.00 1.73
2540 5535 1.689959 GCTTGCACTCGGACATTTTG 58.310 50.000 0.00 0.00 0.00 2.44
2611 5606 4.615949 TGATTGGAACCGTTGATTTGTTG 58.384 39.130 0.00 0.00 0.00 3.33
3010 6005 1.679032 GCGGTAATCCAGACAAAGCCT 60.679 52.381 0.00 0.00 0.00 4.58
3309 6304 6.826668 TCTATTCTGTCAAAGTCAGTGGAAA 58.173 36.000 0.00 0.00 34.86 3.13
3413 6408 8.454106 GTTTGATGATACTAACTGCATGTCTTT 58.546 33.333 0.00 0.00 0.00 2.52
3455 6450 3.322254 TCTCTTCTCTCCTGACCAACAAC 59.678 47.826 0.00 0.00 0.00 3.32
3697 6701 8.318412 TCTTTAACTACTGCCTCAAATACATCA 58.682 33.333 0.00 0.00 0.00 3.07
3752 6756 1.376037 CCCCGTCTCCAAACTGCTC 60.376 63.158 0.00 0.00 0.00 4.26
3934 7105 0.924090 GAACACGAGACGATCATGCC 59.076 55.000 0.00 0.00 0.00 4.40
3935 7106 0.924090 GGAACACGAGACGATCATGC 59.076 55.000 0.00 0.00 0.00 4.06
3936 7107 1.560923 GGGAACACGAGACGATCATG 58.439 55.000 0.00 0.00 0.00 3.07
3943 7114 4.576879 AGAAAAATAGGGGAACACGAGAC 58.423 43.478 0.00 0.00 0.00 3.36
3946 7117 8.411991 AATAAAAGAAAAATAGGGGAACACGA 57.588 30.769 0.00 0.00 0.00 4.35
3950 7121 9.639601 CAGTGAATAAAAGAAAAATAGGGGAAC 57.360 33.333 0.00 0.00 0.00 3.62
3953 7124 9.996554 AAACAGTGAATAAAAGAAAAATAGGGG 57.003 29.630 0.00 0.00 0.00 4.79
3964 7135 4.306600 GTGGGCCAAACAGTGAATAAAAG 58.693 43.478 8.40 0.00 0.00 2.27
3965 7136 3.070302 GGTGGGCCAAACAGTGAATAAAA 59.930 43.478 8.40 0.00 34.09 1.52
3966 7137 2.630580 GGTGGGCCAAACAGTGAATAAA 59.369 45.455 8.40 0.00 34.09 1.40
3969 7140 0.188342 AGGTGGGCCAAACAGTGAAT 59.812 50.000 8.40 0.00 37.19 2.57
3970 7141 0.847373 TAGGTGGGCCAAACAGTGAA 59.153 50.000 8.40 0.00 37.19 3.18
3971 7142 0.847373 TTAGGTGGGCCAAACAGTGA 59.153 50.000 8.40 0.00 37.19 3.41
3972 7143 1.545582 CATTAGGTGGGCCAAACAGTG 59.454 52.381 8.40 0.88 37.19 3.66
3973 7144 1.427368 TCATTAGGTGGGCCAAACAGT 59.573 47.619 8.40 0.00 37.19 3.55
3976 7147 4.551702 ATTTTCATTAGGTGGGCCAAAC 57.448 40.909 8.40 4.19 37.19 2.93
3980 7153 5.011023 CCTATCAATTTTCATTAGGTGGGCC 59.989 44.000 0.00 0.00 0.00 5.80
3997 7170 6.174720 ACTTCGAATCAATAGGCCTATCAA 57.825 37.500 25.60 16.43 0.00 2.57
4015 7188 4.217983 ACTGACCCTCTTGTACTTACTTCG 59.782 45.833 0.00 0.00 0.00 3.79
4020 7193 6.127423 GCTATTGACTGACCCTCTTGTACTTA 60.127 42.308 0.00 0.00 0.00 2.24
4034 7207 8.668353 GTGAAAATAAGATGTGCTATTGACTGA 58.332 33.333 0.00 0.00 0.00 3.41
4036 7209 7.611467 TGGTGAAAATAAGATGTGCTATTGACT 59.389 33.333 0.00 0.00 0.00 3.41
4041 7214 6.543831 GGAGTGGTGAAAATAAGATGTGCTAT 59.456 38.462 0.00 0.00 0.00 2.97
4047 7220 6.588719 TTTGGGAGTGGTGAAAATAAGATG 57.411 37.500 0.00 0.00 0.00 2.90
4052 7225 7.342284 TGTTTAGTTTTGGGAGTGGTGAAAATA 59.658 33.333 0.00 0.00 0.00 1.40
4053 7226 6.155393 TGTTTAGTTTTGGGAGTGGTGAAAAT 59.845 34.615 0.00 0.00 0.00 1.82
4058 7231 4.736464 GCTTGTTTAGTTTTGGGAGTGGTG 60.736 45.833 0.00 0.00 0.00 4.17
4059 7232 3.383505 GCTTGTTTAGTTTTGGGAGTGGT 59.616 43.478 0.00 0.00 0.00 4.16
4061 7234 4.610945 CTGCTTGTTTAGTTTTGGGAGTG 58.389 43.478 0.00 0.00 0.00 3.51
4066 7241 4.810491 ACAATGCTGCTTGTTTAGTTTTGG 59.190 37.500 0.00 0.00 35.90 3.28
4112 7287 2.620627 GGGAGACGGGTTCCATTGAATT 60.621 50.000 4.79 0.00 36.40 2.17
4127 7302 1.056660 TTCTGGTTGACTGGGGAGAC 58.943 55.000 0.00 0.00 0.00 3.36
4131 7306 2.040278 TGATCTTTCTGGTTGACTGGGG 59.960 50.000 0.00 0.00 0.00 4.96
4132 7307 3.423539 TGATCTTTCTGGTTGACTGGG 57.576 47.619 0.00 0.00 0.00 4.45
4145 7320 5.388654 ACAGGTCCATTTGTCTTGATCTTT 58.611 37.500 0.00 0.00 0.00 2.52
4153 7328 5.905331 TGATATCCTACAGGTCCATTTGTCT 59.095 40.000 0.00 0.00 36.34 3.41
4161 7336 4.020128 GGGACAATGATATCCTACAGGTCC 60.020 50.000 13.39 13.39 40.46 4.46
4166 7341 4.826616 TGGAGGGACAATGATATCCTACA 58.173 43.478 0.00 0.00 36.20 2.74
4172 7347 4.254540 AGGGAATGGAGGGACAATGATAT 58.745 43.478 0.00 0.00 0.00 1.63
4180 7355 0.919289 TGGGAAGGGAATGGAGGGAC 60.919 60.000 0.00 0.00 0.00 4.46
4181 7356 0.919289 GTGGGAAGGGAATGGAGGGA 60.919 60.000 0.00 0.00 0.00 4.20
4182 7357 0.921256 AGTGGGAAGGGAATGGAGGG 60.921 60.000 0.00 0.00 0.00 4.30
4184 7359 2.764269 TCTAGTGGGAAGGGAATGGAG 58.236 52.381 0.00 0.00 0.00 3.86
4185 7360 2.961536 TCTAGTGGGAAGGGAATGGA 57.038 50.000 0.00 0.00 0.00 3.41
4186 7361 4.846367 TCATATCTAGTGGGAAGGGAATGG 59.154 45.833 0.00 0.00 0.00 3.16
4187 7362 6.013032 ACATCATATCTAGTGGGAAGGGAATG 60.013 42.308 0.00 0.00 0.00 2.67
4188 7363 6.094302 ACATCATATCTAGTGGGAAGGGAAT 58.906 40.000 0.00 0.00 0.00 3.01
4189 7364 5.476983 ACATCATATCTAGTGGGAAGGGAA 58.523 41.667 0.00 0.00 0.00 3.97
4190 7365 5.093236 ACATCATATCTAGTGGGAAGGGA 57.907 43.478 0.00 0.00 0.00 4.20
4191 7366 7.288852 CCTATACATCATATCTAGTGGGAAGGG 59.711 44.444 0.00 0.00 0.00 3.95
4197 7372 7.609097 ATGGCCTATACATCATATCTAGTGG 57.391 40.000 3.32 0.00 0.00 4.00
4198 7373 9.360901 AGTATGGCCTATACATCATATCTAGTG 57.639 37.037 20.48 0.00 43.38 2.74
4217 7403 6.709397 GGTGGTACCTATTTAAGAAGTATGGC 59.291 42.308 14.36 0.00 34.73 4.40
4264 7456 3.012722 TTCATCACCCCCGTCCCC 61.013 66.667 0.00 0.00 0.00 4.81
4266 7458 2.124695 GCTTCATCACCCCCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
4268 7460 1.299976 GAAGCTTCATCACCCCCGT 59.700 57.895 21.67 0.00 0.00 5.28
4269 7461 1.026718 GTGAAGCTTCATCACCCCCG 61.027 60.000 30.65 0.00 41.02 5.73
4270 7462 0.329596 AGTGAAGCTTCATCACCCCC 59.670 55.000 30.65 16.38 46.60 5.40
4275 7467 4.256110 CCATACACAGTGAAGCTTCATCA 58.744 43.478 30.65 7.53 39.73 3.07
4276 7468 4.256920 ACCATACACAGTGAAGCTTCATC 58.743 43.478 30.65 22.56 39.73 2.92
4277 7469 4.019860 AGACCATACACAGTGAAGCTTCAT 60.020 41.667 30.65 17.42 39.73 2.57
4278 7470 3.324846 AGACCATACACAGTGAAGCTTCA 59.675 43.478 25.16 25.16 34.20 3.02
4279 7471 3.931578 AGACCATACACAGTGAAGCTTC 58.068 45.455 19.89 19.89 0.00 3.86
4280 7472 4.357918 AAGACCATACACAGTGAAGCTT 57.642 40.909 7.81 0.00 0.00 3.74
4281 7473 5.187772 TGATAAGACCATACACAGTGAAGCT 59.812 40.000 7.81 0.00 0.00 3.74
4282 7474 5.419542 TGATAAGACCATACACAGTGAAGC 58.580 41.667 7.81 0.00 0.00 3.86
4283 7475 9.035607 GTATTGATAAGACCATACACAGTGAAG 57.964 37.037 7.81 0.00 0.00 3.02
4284 7476 8.536175 TGTATTGATAAGACCATACACAGTGAA 58.464 33.333 7.81 0.00 0.00 3.18
4285 7477 8.073467 TGTATTGATAAGACCATACACAGTGA 57.927 34.615 7.81 0.00 0.00 3.41
4286 7478 8.768019 CATGTATTGATAAGACCATACACAGTG 58.232 37.037 0.00 0.00 0.00 3.66
4287 7479 8.486210 ACATGTATTGATAAGACCATACACAGT 58.514 33.333 0.00 0.00 0.00 3.55
4288 7480 8.893219 ACATGTATTGATAAGACCATACACAG 57.107 34.615 0.00 0.00 0.00 3.66
4325 7520 4.943705 AGAAGCGCAATTGAAATTCCTAGA 59.056 37.500 11.47 0.00 0.00 2.43
4327 7522 6.942532 ATAGAAGCGCAATTGAAATTCCTA 57.057 33.333 11.47 3.33 0.00 2.94
4328 7523 5.841957 ATAGAAGCGCAATTGAAATTCCT 57.158 34.783 11.47 1.12 0.00 3.36
4338 7533 2.604914 CAGTGACGAATAGAAGCGCAAT 59.395 45.455 11.47 0.00 0.00 3.56
4351 7546 0.611062 CCCAGGTCCTACAGTGACGA 60.611 60.000 0.00 0.00 33.46 4.20
4353 7548 1.275573 GAACCCAGGTCCTACAGTGAC 59.724 57.143 0.00 0.00 0.00 3.67
4359 7554 0.690762 TGCTTGAACCCAGGTCCTAC 59.309 55.000 0.00 0.00 0.00 3.18
4366 7561 1.613836 AGAAAGCTGCTTGAACCCAG 58.386 50.000 16.73 0.00 0.00 4.45
4388 7583 6.780457 ACATGGCTTAAACAAGCTCATAAT 57.220 33.333 9.07 1.95 44.86 1.28
4440 7643 9.843334 CTGGTAAGTTAGTACTTGAGAGTTAAG 57.157 37.037 0.00 0.00 44.22 1.85
4449 7652 3.924686 CGGCACTGGTAAGTTAGTACTTG 59.075 47.826 0.00 0.00 44.22 3.16
4489 7985 5.715434 TTTTAGAACACAATACAAGGGGC 57.285 39.130 0.00 0.00 0.00 5.80
4515 8015 2.915869 ACAGATTCAGAGGGGGTAACA 58.084 47.619 0.00 0.00 39.74 2.41
4516 8016 4.031611 ACTACAGATTCAGAGGGGGTAAC 58.968 47.826 0.00 0.00 0.00 2.50
4545 8094 4.331992 CACCTGAGAATGCAAGTCATACAG 59.668 45.833 0.00 3.49 34.33 2.74
4558 8107 8.718656 AGGCTAAACTATTAATCACCTGAGAAT 58.281 33.333 0.00 0.00 0.00 2.40
4559 8108 7.987458 CAGGCTAAACTATTAATCACCTGAGAA 59.013 37.037 0.00 0.00 43.88 2.87
4560 8109 7.125811 ACAGGCTAAACTATTAATCACCTGAGA 59.874 37.037 11.88 0.00 43.88 3.27
4564 8113 7.092846 ACAGACAGGCTAAACTATTAATCACCT 60.093 37.037 0.00 0.00 0.00 4.00
4647 8225 5.106157 GCCAGCAACACATATAAAAGTGAGT 60.106 40.000 9.47 0.00 39.03 3.41
4650 8228 5.058149 TGCCAGCAACACATATAAAAGTG 57.942 39.130 0.00 0.00 41.40 3.16
4651 8229 5.009631 TCTGCCAGCAACACATATAAAAGT 58.990 37.500 0.00 0.00 0.00 2.66
4652 8230 5.355071 TCTCTGCCAGCAACACATATAAAAG 59.645 40.000 0.00 0.00 0.00 2.27
4653 8231 5.252547 TCTCTGCCAGCAACACATATAAAA 58.747 37.500 0.00 0.00 0.00 1.52
4712 8290 5.579564 AGTCTACATAGGAAGAACGGTTC 57.420 43.478 12.91 12.91 0.00 3.62
4730 8308 6.778559 ACTCTGTGTAAGGAAGAGTAAAGTCT 59.221 38.462 2.82 0.00 46.77 3.24
4863 8441 5.071788 TCCAGACTACAAAACCTGTGAAGAT 59.928 40.000 0.00 0.00 39.20 2.40
5399 8977 2.556286 GGGCTACTGCTCAACAACC 58.444 57.895 0.00 0.00 40.03 3.77
5408 8987 5.243207 ACCGTATTATAAATGGGCTACTGC 58.757 41.667 9.37 0.00 38.76 4.40
5609 9234 1.909700 TCTTGCAGTTGCCCTTTAGG 58.090 50.000 1.06 0.00 41.18 2.69
5610 9235 5.841957 ATAATCTTGCAGTTGCCCTTTAG 57.158 39.130 1.06 0.00 41.18 1.85
5611 9236 6.423182 AGTATAATCTTGCAGTTGCCCTTTA 58.577 36.000 1.06 0.00 41.18 1.85
5612 9237 5.264395 AGTATAATCTTGCAGTTGCCCTTT 58.736 37.500 1.06 0.00 41.18 3.11
5613 9238 4.860022 AGTATAATCTTGCAGTTGCCCTT 58.140 39.130 1.06 0.00 41.18 3.95
5614 9239 4.510167 AGTATAATCTTGCAGTTGCCCT 57.490 40.909 1.06 0.00 41.18 5.19
5615 9240 4.399303 ACAAGTATAATCTTGCAGTTGCCC 59.601 41.667 1.06 0.00 45.86 5.36
5616 9241 5.567138 ACAAGTATAATCTTGCAGTTGCC 57.433 39.130 1.06 0.00 45.86 4.52
5617 9242 7.382218 ACAAAACAAGTATAATCTTGCAGTTGC 59.618 33.333 6.38 0.00 45.86 4.17
5677 9310 8.903820 AGATAACCATAAAATTGGCACTACTTC 58.096 33.333 0.00 0.00 40.68 3.01
5910 9734 4.857509 TTATACCAGCCCAAAACAACAC 57.142 40.909 0.00 0.00 0.00 3.32
5911 9735 6.426646 AATTTATACCAGCCCAAAACAACA 57.573 33.333 0.00 0.00 0.00 3.33
5951 9779 3.829026 ACAAGTCTGTCATAGTGCTGAGA 59.171 43.478 0.00 0.00 0.00 3.27
5964 9792 8.135382 ACTTTAGTGGTGATATACAAGTCTGT 57.865 34.615 0.00 0.00 39.75 3.41
6007 9839 0.325933 TGCCTGCAGAGTTAGCACAT 59.674 50.000 17.39 0.00 37.02 3.21
6173 10005 2.094545 CCCCTTAAAGCTGTGCAATGTC 60.095 50.000 0.00 0.00 0.00 3.06
6189 10021 2.431954 CTGATGATGAACAGCCCCTT 57.568 50.000 0.00 0.00 33.55 3.95
6289 10121 1.593787 CGCCATGGACTCTGACTGT 59.406 57.895 18.40 0.00 0.00 3.55
6419 10251 2.029828 ACTAGGTATGCGTATGCTCAGC 60.030 50.000 8.69 5.54 43.34 4.26
6521 10353 4.681978 AGCGGTTCCGTGTCCTGC 62.682 66.667 12.81 0.00 0.00 4.85
6590 10426 0.324738 TTGAGCTCCCACTCCGAGAT 60.325 55.000 12.15 0.00 35.72 2.75
6691 10529 8.439993 TGTAAACATGTACAGACAGCTAAAAA 57.560 30.769 0.00 0.00 39.50 1.94
6724 10562 3.984018 CAAGCATTGCGATTCAAAAGG 57.016 42.857 2.38 0.00 40.39 3.11
6881 10721 3.739300 CACCTTACAAGACGACGTCATTT 59.261 43.478 28.31 13.47 34.60 2.32
7013 10854 3.494045 TCTCATCAGTTACTGTCAGCG 57.506 47.619 12.41 0.00 32.61 5.18
7153 10994 1.562017 TTTGTAGAATATCGCGCGCA 58.438 45.000 32.61 18.69 0.00 6.09
7161 11002 6.890268 GGGTTTGACCTCCTTTTGTAGAATAT 59.110 38.462 0.00 0.00 38.64 1.28
7162 11003 6.243148 GGGTTTGACCTCCTTTTGTAGAATA 58.757 40.000 0.00 0.00 38.64 1.75
7163 11004 5.077564 GGGTTTGACCTCCTTTTGTAGAAT 58.922 41.667 0.00 0.00 38.64 2.40
7309 11191 3.049344 AGGATGAATGGAAGGTAGGGAC 58.951 50.000 0.00 0.00 0.00 4.46
7321 11203 1.019673 CAAGGCGACCAGGATGAATG 58.980 55.000 0.00 0.00 39.69 2.67
7326 11208 4.115199 GGCCAAGGCGACCAGGAT 62.115 66.667 4.80 0.00 43.06 3.24
7336 11218 2.034066 TCAAGAAGGCGGCCAAGG 59.966 61.111 23.09 5.83 0.00 3.61
7338 11220 2.282180 GGTCAAGAAGGCGGCCAA 60.282 61.111 23.09 0.00 0.00 4.52
7340 11222 4.699522 ACGGTCAAGAAGGCGGCC 62.700 66.667 12.11 12.11 0.00 6.13
7348 11230 2.649034 GCGAGGTCACGGTCAAGA 59.351 61.111 0.00 0.00 0.00 3.02
7502 11393 1.812922 GGAGTCGTGCTGCAGGATG 60.813 63.158 25.40 20.52 40.87 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.