Multiple sequence alignment - TraesCS5D01G225800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G225800 chr5D 100.000 3066 0 0 1 3066 334254216 334257281 0.000000e+00 5662.0
1 TraesCS5D01G225800 chr5D 95.516 223 10 0 1 223 88270651 88270429 1.050000e-94 357.0
2 TraesCS5D01G225800 chr5D 96.729 214 7 0 11 224 169261233 169261446 1.050000e-94 357.0
3 TraesCS5D01G225800 chr5D 93.750 208 9 3 425 630 326737967 326737762 2.970000e-80 309.0
4 TraesCS5D01G225800 chr5A 86.995 2399 131 73 714 3066 436088905 436091168 0.000000e+00 2534.0
5 TraesCS5D01G225800 chr5B 88.545 1650 75 38 693 2314 391144448 391146011 0.000000e+00 1895.0
6 TraesCS5D01G225800 chr5B 89.796 637 49 4 2431 3066 391146037 391146658 0.000000e+00 802.0
7 TraesCS5D01G225800 chr5B 98.361 61 1 0 625 685 283910208 283910148 1.160000e-19 108.0
8 TraesCS5D01G225800 chr5B 95.385 65 3 0 625 689 140730084 140730020 1.500000e-18 104.0
9 TraesCS5D01G225800 chr7D 96.875 224 7 0 1 224 218082410 218082633 2.890000e-100 375.0
10 TraesCS5D01G225800 chr7D 93.237 207 4 1 247 443 12805889 12806095 2.310000e-76 296.0
11 TraesCS5D01G225800 chr7D 86.190 210 29 0 1249 1458 524915884 524915675 8.550000e-56 228.0
12 TraesCS5D01G225800 chr2D 95.536 224 10 0 1 224 155616757 155616534 2.910000e-95 359.0
13 TraesCS5D01G225800 chr2D 95.111 225 10 1 1 224 253501036 253500812 1.350000e-93 353.0
14 TraesCS5D01G225800 chr2D 96.774 186 6 0 441 626 631194262 631194447 8.260000e-81 311.0
15 TraesCS5D01G225800 chr2D 98.333 60 1 0 625 684 152661825 152661884 4.180000e-19 106.0
16 TraesCS5D01G225800 chr6D 95.516 223 10 0 1 223 151509125 151509347 1.050000e-94 357.0
17 TraesCS5D01G225800 chr6D 93.133 233 16 0 1 233 20641739 20641507 2.930000e-90 342.0
18 TraesCS5D01G225800 chr6D 97.326 187 4 1 444 630 348607207 348607392 1.770000e-82 316.0
19 TraesCS5D01G225800 chr6D 97.297 185 5 0 444 628 112815915 112815731 6.380000e-82 315.0
20 TraesCS5D01G225800 chr6D 93.627 204 10 2 426 629 48535292 48535092 4.970000e-78 302.0
21 TraesCS5D01G225800 chr6D 95.000 80 4 0 1379 1458 432709198 432709119 3.210000e-25 126.0
22 TraesCS5D01G225800 chr3D 96.729 214 7 0 11 224 311455135 311455348 1.050000e-94 357.0
23 TraesCS5D01G225800 chr3D 95.431 197 9 0 438 634 575732565 575732369 6.380000e-82 315.0
24 TraesCS5D01G225800 chr3D 95.431 197 7 2 435 630 299744302 299744497 2.300000e-81 313.0
25 TraesCS5D01G225800 chr3D 94.000 200 5 3 250 443 552577941 552577743 2.310000e-76 296.0
26 TraesCS5D01G225800 chr3D 93.617 94 6 0 1250 1343 63460739 63460646 1.150000e-29 141.0
27 TraesCS5D01G225800 chr3D 85.401 137 16 4 1249 1383 395065177 395065043 4.120000e-29 139.0
28 TraesCS5D01G225800 chr3D 95.312 64 3 0 626 689 351309986 351310049 5.410000e-18 102.0
29 TraesCS5D01G225800 chr1B 93.534 232 15 0 1 232 355112171 355112402 2.260000e-91 346.0
30 TraesCS5D01G225800 chr1B 83.019 212 36 0 1247 1458 631967503 631967292 3.120000e-45 193.0
31 TraesCS5D01G225800 chr1D 95.939 197 6 2 435 630 458763219 458763414 4.930000e-83 318.0
32 TraesCS5D01G225800 chr1D 95.337 193 8 1 440 632 471759260 471759069 3.840000e-79 305.0
33 TraesCS5D01G225800 chr1D 90.206 194 14 5 250 443 8075890 8076078 6.560000e-62 248.0
34 TraesCS5D01G225800 chr1D 82.547 212 37 0 1247 1458 459880413 459880202 1.450000e-43 187.0
35 TraesCS5D01G225800 chr4D 94.898 196 8 2 250 443 424574734 424574539 3.840000e-79 305.0
36 TraesCS5D01G225800 chr4D 78.537 205 34 10 1247 1446 483369420 483369619 3.210000e-25 126.0
37 TraesCS5D01G225800 chr4D 95.385 65 3 0 625 689 5141749 5141685 1.500000e-18 104.0
38 TraesCS5D01G225800 chr4D 98.113 53 1 0 1401 1453 335349354 335349406 3.260000e-15 93.5
39 TraesCS5D01G225800 chrUn 93.237 207 4 1 247 443 42712373 42712579 2.310000e-76 296.0
40 TraesCS5D01G225800 chrUn 93.237 207 4 1 247 443 42713761 42713967 2.310000e-76 296.0
41 TraesCS5D01G225800 chrUn 93.237 207 4 1 247 443 329559583 329559789 2.310000e-76 296.0
42 TraesCS5D01G225800 chr2B 94.301 193 7 2 250 442 531563120 531562932 2.990000e-75 292.0
43 TraesCS5D01G225800 chr2B 89.796 196 18 1 250 443 140500491 140500296 1.830000e-62 250.0
44 TraesCS5D01G225800 chr2B 98.361 61 1 0 625 685 573813927 573813867 1.160000e-19 108.0
45 TraesCS5D01G225800 chr7A 90.323 217 9 2 239 443 135688345 135688561 1.080000e-69 274.0
46 TraesCS5D01G225800 chr7A 89.552 201 10 4 250 440 49476952 49476753 8.490000e-61 244.0
47 TraesCS5D01G225800 chr7A 85.714 210 30 0 1249 1458 604853731 604853522 3.980000e-54 222.0
48 TraesCS5D01G225800 chr7B 91.282 195 13 3 250 443 150822153 150822344 2.340000e-66 263.0
49 TraesCS5D01G225800 chr7B 84.762 210 32 0 1249 1458 561280623 561280414 8.610000e-51 211.0
50 TraesCS5D01G225800 chr7B 79.082 196 37 4 1261 1454 77432170 77432363 6.900000e-27 132.0
51 TraesCS5D01G225800 chr1A 82.857 210 36 0 1249 1458 551592914 551592705 4.040000e-44 189.0
52 TraesCS5D01G225800 chr1A 91.262 103 9 0 1379 1481 444136846 444136948 1.150000e-29 141.0
53 TraesCS5D01G225800 chr1A 75.962 208 44 6 1247 1451 569139386 569139182 5.410000e-18 102.0
54 TraesCS5D01G225800 chr6A 95.000 80 4 0 1379 1458 578886311 578886232 3.210000e-25 126.0
55 TraesCS5D01G225800 chr6B 93.750 80 5 0 1379 1458 652629938 652629859 1.490000e-23 121.0
56 TraesCS5D01G225800 chr3B 98.361 61 1 0 625 685 15138209 15138269 1.160000e-19 108.0
57 TraesCS5D01G225800 chr3B 96.825 63 2 0 625 687 492230163 492230225 4.180000e-19 106.0
58 TraesCS5D01G225800 chr3A 98.361 61 1 0 625 685 573835572 573835512 1.160000e-19 108.0
59 TraesCS5D01G225800 chr4B 76.963 191 40 4 1261 1449 613754442 613754254 4.180000e-19 106.0
60 TraesCS5D01G225800 chr4B 98.113 53 1 0 1401 1453 413500328 413500380 3.260000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G225800 chr5D 334254216 334257281 3065 False 5662.0 5662 100.0000 1 3066 1 chr5D.!!$F2 3065
1 TraesCS5D01G225800 chr5A 436088905 436091168 2263 False 2534.0 2534 86.9950 714 3066 1 chr5A.!!$F1 2352
2 TraesCS5D01G225800 chr5B 391144448 391146658 2210 False 1348.5 1895 89.1705 693 3066 2 chr5B.!!$F1 2373
3 TraesCS5D01G225800 chrUn 42712373 42713967 1594 False 296.0 296 93.2370 247 443 2 chrUn.!!$F2 196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 997 0.322098 AGCGGAGGAGATCGATCGAT 60.322 55.0 29.76 29.76 37.59 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 3099 0.325272 TGCGTGCTTGGGTATGGTAA 59.675 50.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
24 25 1.917872 AGGGCCTAATGCGTTTTTCA 58.082 45.000 2.82 0.00 42.61 2.69
25 26 2.243810 AGGGCCTAATGCGTTTTTCAA 58.756 42.857 2.82 0.00 42.61 2.69
26 27 2.630580 AGGGCCTAATGCGTTTTTCAAA 59.369 40.909 2.82 0.00 42.61 2.69
27 28 3.070302 AGGGCCTAATGCGTTTTTCAAAA 59.930 39.130 2.82 0.00 42.61 2.44
28 29 3.185594 GGGCCTAATGCGTTTTTCAAAAC 59.814 43.478 0.84 5.25 43.61 2.43
29 30 3.185594 GGCCTAATGCGTTTTTCAAAACC 59.814 43.478 9.12 3.93 44.05 3.27
30 31 3.121160 GCCTAATGCGTTTTTCAAAACCG 60.121 43.478 9.12 0.00 44.05 4.44
31 32 4.045783 CCTAATGCGTTTTTCAAAACCGT 58.954 39.130 9.12 2.33 44.05 4.83
32 33 4.147479 CCTAATGCGTTTTTCAAAACCGTC 59.853 41.667 9.12 0.00 44.05 4.79
33 34 2.923605 TGCGTTTTTCAAAACCGTCT 57.076 40.000 9.12 0.00 44.05 4.18
34 35 3.219052 TGCGTTTTTCAAAACCGTCTT 57.781 38.095 9.12 0.00 44.05 3.01
35 36 3.576648 TGCGTTTTTCAAAACCGTCTTT 58.423 36.364 9.12 0.00 44.05 2.52
36 37 3.365220 TGCGTTTTTCAAAACCGTCTTTG 59.635 39.130 9.12 1.10 44.05 2.77
37 38 3.608939 GCGTTTTTCAAAACCGTCTTTGA 59.391 39.130 9.12 5.34 44.05 2.69
38 39 4.489682 GCGTTTTTCAAAACCGTCTTTGAC 60.490 41.667 9.12 0.00 43.29 3.18
39 40 4.854839 CGTTTTTCAAAACCGTCTTTGACT 59.145 37.500 9.12 0.00 43.29 3.41
40 41 6.022821 CGTTTTTCAAAACCGTCTTTGACTA 58.977 36.000 9.12 0.00 43.29 2.59
41 42 6.689669 CGTTTTTCAAAACCGTCTTTGACTAT 59.310 34.615 9.12 0.00 43.29 2.12
42 43 7.219344 CGTTTTTCAAAACCGTCTTTGACTATT 59.781 33.333 9.12 0.00 43.29 1.73
43 44 7.979115 TTTTCAAAACCGTCTTTGACTATTG 57.021 32.000 8.27 0.00 43.29 1.90
44 45 6.928979 TTCAAAACCGTCTTTGACTATTGA 57.071 33.333 8.27 0.00 43.29 2.57
45 46 6.295039 TCAAAACCGTCTTTGACTATTGAC 57.705 37.500 5.34 0.00 39.74 3.18
46 47 5.818336 TCAAAACCGTCTTTGACTATTGACA 59.182 36.000 5.34 0.00 39.74 3.58
47 48 6.316640 TCAAAACCGTCTTTGACTATTGACAA 59.683 34.615 5.34 0.00 39.74 3.18
48 49 5.924475 AACCGTCTTTGACTATTGACAAG 57.076 39.130 0.00 0.00 0.00 3.16
49 50 5.209818 ACCGTCTTTGACTATTGACAAGA 57.790 39.130 0.00 0.00 0.00 3.02
50 51 5.794894 ACCGTCTTTGACTATTGACAAGAT 58.205 37.500 0.00 0.00 0.00 2.40
51 52 6.231211 ACCGTCTTTGACTATTGACAAGATT 58.769 36.000 0.00 0.00 0.00 2.40
52 53 7.383687 ACCGTCTTTGACTATTGACAAGATTA 58.616 34.615 0.00 0.00 0.00 1.75
53 54 7.876068 ACCGTCTTTGACTATTGACAAGATTAA 59.124 33.333 0.00 0.00 0.00 1.40
54 55 8.883731 CCGTCTTTGACTATTGACAAGATTAAT 58.116 33.333 0.00 0.00 0.00 1.40
113 114 5.803020 GAAAGCTCCTTTCACATACGAAT 57.197 39.130 11.65 0.00 46.23 3.34
114 115 6.183309 GAAAGCTCCTTTCACATACGAATT 57.817 37.500 11.65 0.00 46.23 2.17
115 116 6.575162 AAAGCTCCTTTCACATACGAATTT 57.425 33.333 0.00 0.00 0.00 1.82
116 117 5.551760 AGCTCCTTTCACATACGAATTTG 57.448 39.130 0.00 0.00 0.00 2.32
117 118 5.245531 AGCTCCTTTCACATACGAATTTGA 58.754 37.500 0.00 0.00 0.00 2.69
118 119 5.122396 AGCTCCTTTCACATACGAATTTGAC 59.878 40.000 0.00 0.00 0.00 3.18
119 120 5.673818 GCTCCTTTCACATACGAATTTGACC 60.674 44.000 0.00 0.00 0.00 4.02
120 121 4.390603 TCCTTTCACATACGAATTTGACCG 59.609 41.667 0.00 0.00 0.00 4.79
121 122 4.153475 CCTTTCACATACGAATTTGACCGT 59.847 41.667 0.00 0.00 42.15 4.83
122 123 5.349270 CCTTTCACATACGAATTTGACCGTA 59.651 40.000 0.00 0.00 43.97 4.02
124 125 7.223193 CCTTTCACATACGAATTTGACCGTATA 59.777 37.037 8.94 0.00 46.35 1.47
125 126 7.453980 TTCACATACGAATTTGACCGTATAC 57.546 36.000 8.94 0.00 46.35 1.47
126 127 6.798482 TCACATACGAATTTGACCGTATACT 58.202 36.000 8.94 0.00 46.35 2.12
127 128 7.259882 TCACATACGAATTTGACCGTATACTT 58.740 34.615 8.94 0.00 46.35 2.24
128 129 7.760794 TCACATACGAATTTGACCGTATACTTT 59.239 33.333 8.94 0.00 46.35 2.66
129 130 7.844169 CACATACGAATTTGACCGTATACTTTG 59.156 37.037 8.94 2.86 46.35 2.77
130 131 7.546667 ACATACGAATTTGACCGTATACTTTGT 59.453 33.333 8.94 3.35 46.35 2.83
131 132 6.160664 ACGAATTTGACCGTATACTTTGTG 57.839 37.500 0.00 0.00 37.23 3.33
132 133 5.697633 ACGAATTTGACCGTATACTTTGTGT 59.302 36.000 0.00 0.00 37.23 3.72
133 134 6.867816 ACGAATTTGACCGTATACTTTGTGTA 59.132 34.615 0.00 0.00 37.23 2.90
134 135 7.384660 ACGAATTTGACCGTATACTTTGTGTAA 59.615 33.333 0.00 0.00 37.23 2.41
135 136 7.896274 CGAATTTGACCGTATACTTTGTGTAAG 59.104 37.037 0.56 0.00 39.87 2.34
137 138 8.611654 ATTTGACCGTATACTTTGTGTAAGTT 57.388 30.769 0.56 0.00 44.73 2.66
138 139 9.709495 ATTTGACCGTATACTTTGTGTAAGTTA 57.291 29.630 0.56 0.00 44.73 2.24
139 140 8.519492 TTGACCGTATACTTTGTGTAAGTTAC 57.481 34.615 6.06 6.06 44.73 2.50
140 141 7.656412 TGACCGTATACTTTGTGTAAGTTACA 58.344 34.615 11.75 11.75 44.73 2.41
141 142 8.306038 TGACCGTATACTTTGTGTAAGTTACAT 58.694 33.333 18.35 5.28 44.73 2.29
142 143 8.470040 ACCGTATACTTTGTGTAAGTTACATG 57.530 34.615 18.35 11.44 44.73 3.21
143 144 8.090214 ACCGTATACTTTGTGTAAGTTACATGT 58.910 33.333 18.35 15.66 44.73 3.21
144 145 8.589629 CCGTATACTTTGTGTAAGTTACATGTC 58.410 37.037 18.35 7.04 44.73 3.06
145 146 9.131416 CGTATACTTTGTGTAAGTTACATGTCA 57.869 33.333 18.35 9.49 44.73 3.58
180 181 7.649057 ACTCTAACATTTTGTCAAAGTTAGCC 58.351 34.615 21.57 0.00 40.68 3.93
181 182 7.502561 ACTCTAACATTTTGTCAAAGTTAGCCT 59.497 33.333 21.57 12.36 40.68 4.58
182 183 7.871853 TCTAACATTTTGTCAAAGTTAGCCTC 58.128 34.615 21.57 0.00 40.68 4.70
183 184 5.108385 ACATTTTGTCAAAGTTAGCCTCG 57.892 39.130 0.00 0.00 0.00 4.63
184 185 4.819630 ACATTTTGTCAAAGTTAGCCTCGA 59.180 37.500 0.00 0.00 0.00 4.04
185 186 5.298276 ACATTTTGTCAAAGTTAGCCTCGAA 59.702 36.000 0.00 0.00 0.00 3.71
186 187 5.821516 TTTTGTCAAAGTTAGCCTCGAAA 57.178 34.783 0.00 0.00 0.00 3.46
187 188 5.821516 TTTGTCAAAGTTAGCCTCGAAAA 57.178 34.783 0.00 0.00 0.00 2.29
188 189 5.821516 TTGTCAAAGTTAGCCTCGAAAAA 57.178 34.783 0.00 0.00 0.00 1.94
189 190 5.164606 TGTCAAAGTTAGCCTCGAAAAAC 57.835 39.130 0.00 0.00 0.00 2.43
190 191 4.209112 GTCAAAGTTAGCCTCGAAAAACG 58.791 43.478 0.00 0.00 44.09 3.60
191 192 2.963498 AAGTTAGCCTCGAAAAACGC 57.037 45.000 0.00 0.00 42.26 4.84
192 193 1.873698 AGTTAGCCTCGAAAAACGCA 58.126 45.000 0.00 0.00 42.26 5.24
193 194 2.423577 AGTTAGCCTCGAAAAACGCAT 58.576 42.857 0.00 0.00 42.26 4.73
194 195 2.812011 AGTTAGCCTCGAAAAACGCATT 59.188 40.909 0.00 0.00 42.26 3.56
195 196 3.998341 AGTTAGCCTCGAAAAACGCATTA 59.002 39.130 0.00 0.00 42.26 1.90
196 197 4.092968 AGTTAGCCTCGAAAAACGCATTAG 59.907 41.667 0.00 0.00 42.26 1.73
197 198 2.695359 AGCCTCGAAAAACGCATTAGA 58.305 42.857 0.00 0.00 42.26 2.10
198 199 2.415512 AGCCTCGAAAAACGCATTAGAC 59.584 45.455 0.00 0.00 42.26 2.59
199 200 2.475685 GCCTCGAAAAACGCATTAGACC 60.476 50.000 0.00 0.00 42.26 3.85
200 201 2.095372 CCTCGAAAAACGCATTAGACCC 59.905 50.000 0.00 0.00 42.26 4.46
201 202 3.000727 CTCGAAAAACGCATTAGACCCT 58.999 45.455 0.00 0.00 42.26 4.34
202 203 2.739913 TCGAAAAACGCATTAGACCCTG 59.260 45.455 0.00 0.00 42.26 4.45
203 204 2.482721 CGAAAAACGCATTAGACCCTGT 59.517 45.455 0.00 0.00 34.51 4.00
204 205 3.680937 CGAAAAACGCATTAGACCCTGTA 59.319 43.478 0.00 0.00 34.51 2.74
205 206 4.331717 CGAAAAACGCATTAGACCCTGTAT 59.668 41.667 0.00 0.00 34.51 2.29
206 207 5.521010 CGAAAAACGCATTAGACCCTGTATA 59.479 40.000 0.00 0.00 34.51 1.47
207 208 6.292168 CGAAAAACGCATTAGACCCTGTATAG 60.292 42.308 0.00 0.00 34.51 1.31
208 209 5.864418 AAACGCATTAGACCCTGTATAGA 57.136 39.130 0.00 0.00 0.00 1.98
209 210 6.420913 AAACGCATTAGACCCTGTATAGAT 57.579 37.500 0.00 0.00 0.00 1.98
210 211 5.392767 ACGCATTAGACCCTGTATAGATG 57.607 43.478 0.00 0.00 0.00 2.90
211 212 4.220821 ACGCATTAGACCCTGTATAGATGG 59.779 45.833 0.00 0.00 0.00 3.51
212 213 4.462834 CGCATTAGACCCTGTATAGATGGA 59.537 45.833 0.00 0.00 0.00 3.41
213 214 5.047306 CGCATTAGACCCTGTATAGATGGAA 60.047 44.000 0.00 0.00 0.00 3.53
214 215 6.402222 GCATTAGACCCTGTATAGATGGAAG 58.598 44.000 0.00 0.00 0.00 3.46
215 216 6.575254 GCATTAGACCCTGTATAGATGGAAGG 60.575 46.154 0.00 0.00 0.00 3.46
216 217 4.834406 AGACCCTGTATAGATGGAAGGA 57.166 45.455 0.00 0.00 0.00 3.36
217 218 4.746466 AGACCCTGTATAGATGGAAGGAG 58.254 47.826 0.00 0.00 0.00 3.69
218 219 3.835395 GACCCTGTATAGATGGAAGGAGG 59.165 52.174 0.00 0.00 0.00 4.30
219 220 3.177228 CCCTGTATAGATGGAAGGAGGG 58.823 54.545 0.00 0.00 33.23 4.30
220 221 3.181406 CCCTGTATAGATGGAAGGAGGGA 60.181 52.174 0.00 0.00 41.40 4.20
221 222 4.093011 CCTGTATAGATGGAAGGAGGGAG 58.907 52.174 0.00 0.00 0.00 4.30
222 223 4.449968 CCTGTATAGATGGAAGGAGGGAGT 60.450 50.000 0.00 0.00 0.00 3.85
223 224 5.222358 CCTGTATAGATGGAAGGAGGGAGTA 60.222 48.000 0.00 0.00 0.00 2.59
224 225 5.642165 TGTATAGATGGAAGGAGGGAGTAC 58.358 45.833 0.00 0.00 0.00 2.73
225 226 5.375956 TGTATAGATGGAAGGAGGGAGTACT 59.624 44.000 0.00 0.00 0.00 2.73
226 227 3.786213 AGATGGAAGGAGGGAGTACTT 57.214 47.619 0.00 0.00 0.00 2.24
227 228 4.901785 AGATGGAAGGAGGGAGTACTTA 57.098 45.455 0.00 0.00 0.00 2.24
228 229 5.222278 AGATGGAAGGAGGGAGTACTTAA 57.778 43.478 0.00 0.00 0.00 1.85
229 230 5.793967 AGATGGAAGGAGGGAGTACTTAAT 58.206 41.667 0.00 0.00 0.00 1.40
230 231 6.213525 AGATGGAAGGAGGGAGTACTTAATT 58.786 40.000 0.00 0.00 0.00 1.40
231 232 6.678857 AGATGGAAGGAGGGAGTACTTAATTT 59.321 38.462 0.00 0.00 0.00 1.82
232 233 6.062258 TGGAAGGAGGGAGTACTTAATTTG 57.938 41.667 0.00 0.00 0.00 2.32
233 234 5.045140 TGGAAGGAGGGAGTACTTAATTTGG 60.045 44.000 0.00 0.00 0.00 3.28
234 235 4.505324 AGGAGGGAGTACTTAATTTGGC 57.495 45.455 0.00 0.00 0.00 4.52
235 236 3.202373 AGGAGGGAGTACTTAATTTGGCC 59.798 47.826 0.00 0.00 0.00 5.36
236 237 3.053917 GGAGGGAGTACTTAATTTGGCCA 60.054 47.826 0.00 0.00 0.00 5.36
237 238 4.200092 GAGGGAGTACTTAATTTGGCCAG 58.800 47.826 5.11 0.00 0.00 4.85
238 239 3.850173 AGGGAGTACTTAATTTGGCCAGA 59.150 43.478 5.11 0.08 0.00 3.86
239 240 4.080299 AGGGAGTACTTAATTTGGCCAGAG 60.080 45.833 5.11 3.09 0.00 3.35
240 241 4.080526 GGGAGTACTTAATTTGGCCAGAGA 60.081 45.833 5.11 0.00 0.00 3.10
241 242 5.497474 GGAGTACTTAATTTGGCCAGAGAA 58.503 41.667 5.11 0.00 0.00 2.87
242 243 5.944007 GGAGTACTTAATTTGGCCAGAGAAA 59.056 40.000 5.11 0.00 0.00 2.52
243 244 6.433093 GGAGTACTTAATTTGGCCAGAGAAAA 59.567 38.462 5.11 0.00 0.00 2.29
244 245 7.039993 GGAGTACTTAATTTGGCCAGAGAAAAA 60.040 37.037 5.11 0.00 0.00 1.94
268 269 0.698238 AGGCTAGTCACAATGGGCAA 59.302 50.000 0.00 0.00 0.00 4.52
343 354 5.353956 GGAACATGTATGTAGTGTCATGCAA 59.646 40.000 0.00 0.00 41.87 4.08
433 444 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
434 445 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
435 446 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
436 447 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
437 448 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
438 449 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
439 450 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
440 451 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
441 452 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
442 453 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
443 454 8.772705 CAAGCACCTCTCTCTTCATTAAATATC 58.227 37.037 0.00 0.00 0.00 1.63
444 455 8.027524 AGCACCTCTCTCTTCATTAAATATCA 57.972 34.615 0.00 0.00 0.00 2.15
445 456 8.149647 AGCACCTCTCTCTTCATTAAATATCAG 58.850 37.037 0.00 0.00 0.00 2.90
446 457 7.930865 GCACCTCTCTCTTCATTAAATATCAGT 59.069 37.037 0.00 0.00 0.00 3.41
447 458 9.829507 CACCTCTCTCTTCATTAAATATCAGTT 57.170 33.333 0.00 0.00 0.00 3.16
456 467 9.988350 CTTCATTAAATATCAGTTTTGCTACGT 57.012 29.630 0.00 0.00 0.00 3.57
457 468 9.982291 TTCATTAAATATCAGTTTTGCTACGTC 57.018 29.630 0.00 0.00 0.00 4.34
458 469 9.378551 TCATTAAATATCAGTTTTGCTACGTCT 57.621 29.630 0.00 0.00 0.00 4.18
459 470 9.638300 CATTAAATATCAGTTTTGCTACGTCTC 57.362 33.333 0.00 0.00 0.00 3.36
460 471 8.766000 TTAAATATCAGTTTTGCTACGTCTCA 57.234 30.769 0.00 0.00 0.00 3.27
461 472 6.893958 AATATCAGTTTTGCTACGTCTCAG 57.106 37.500 0.00 0.00 0.00 3.35
462 473 3.728076 TCAGTTTTGCTACGTCTCAGT 57.272 42.857 0.00 0.00 0.00 3.41
463 474 3.639538 TCAGTTTTGCTACGTCTCAGTC 58.360 45.455 0.00 0.00 0.00 3.51
464 475 2.405357 CAGTTTTGCTACGTCTCAGTCG 59.595 50.000 0.00 0.00 0.00 4.18
465 476 2.292569 AGTTTTGCTACGTCTCAGTCGA 59.707 45.455 0.00 0.00 0.00 4.20
466 477 2.327081 TTTGCTACGTCTCAGTCGAC 57.673 50.000 7.70 7.70 0.00 4.20
467 478 1.520494 TTGCTACGTCTCAGTCGACT 58.480 50.000 13.58 13.58 0.00 4.18
468 479 1.520494 TGCTACGTCTCAGTCGACTT 58.480 50.000 17.26 2.43 0.00 3.01
469 480 2.691927 TGCTACGTCTCAGTCGACTTA 58.308 47.619 17.26 7.41 0.00 2.24
470 481 2.671888 TGCTACGTCTCAGTCGACTTAG 59.328 50.000 17.26 18.13 38.24 2.18
471 482 2.928757 GCTACGTCTCAGTCGACTTAGA 59.071 50.000 22.49 22.49 37.74 2.10
472 483 3.242059 GCTACGTCTCAGTCGACTTAGAC 60.242 52.174 34.76 34.76 41.46 2.59
484 495 5.867166 GTCGACTTAGACTTCGTTATGTCT 58.133 41.667 8.70 0.00 44.56 3.41
485 496 5.958949 GTCGACTTAGACTTCGTTATGTCTC 59.041 44.000 8.70 0.00 41.92 3.36
486 497 5.640783 TCGACTTAGACTTCGTTATGTCTCA 59.359 40.000 0.00 0.00 41.92 3.27
487 498 5.960683 CGACTTAGACTTCGTTATGTCTCAG 59.039 44.000 0.00 0.00 41.92 3.35
488 499 6.402334 CGACTTAGACTTCGTTATGTCTCAGT 60.402 42.308 8.97 8.97 45.06 3.41
489 500 6.844254 ACTTAGACTTCGTTATGTCTCAGTC 58.156 40.000 0.00 0.00 41.23 3.51
490 501 4.343811 AGACTTCGTTATGTCTCAGTCG 57.656 45.455 0.00 0.00 39.04 4.18
491 502 4.001652 AGACTTCGTTATGTCTCAGTCGA 58.998 43.478 0.00 0.00 39.04 4.20
492 503 4.636648 AGACTTCGTTATGTCTCAGTCGAT 59.363 41.667 0.00 0.00 39.04 3.59
493 504 4.663166 ACTTCGTTATGTCTCAGTCGATG 58.337 43.478 0.00 0.00 0.00 3.84
494 505 4.156190 ACTTCGTTATGTCTCAGTCGATGT 59.844 41.667 0.00 0.00 33.39 3.06
495 506 4.696899 TCGTTATGTCTCAGTCGATGTT 57.303 40.909 0.00 0.00 0.00 2.71
496 507 5.806366 TCGTTATGTCTCAGTCGATGTTA 57.194 39.130 0.00 0.00 0.00 2.41
497 508 6.373186 TCGTTATGTCTCAGTCGATGTTAT 57.627 37.500 0.00 0.00 0.00 1.89
498 509 7.486802 TCGTTATGTCTCAGTCGATGTTATA 57.513 36.000 0.00 0.00 0.00 0.98
499 510 8.095937 TCGTTATGTCTCAGTCGATGTTATAT 57.904 34.615 0.00 0.00 0.00 0.86
500 511 8.565416 TCGTTATGTCTCAGTCGATGTTATATT 58.435 33.333 0.00 0.00 0.00 1.28
501 512 8.841822 CGTTATGTCTCAGTCGATGTTATATTC 58.158 37.037 0.00 0.00 0.00 1.75
502 513 9.130312 GTTATGTCTCAGTCGATGTTATATTCC 57.870 37.037 0.00 0.00 0.00 3.01
503 514 6.709018 TGTCTCAGTCGATGTTATATTCCA 57.291 37.500 0.00 0.00 0.00 3.53
504 515 7.290110 TGTCTCAGTCGATGTTATATTCCAT 57.710 36.000 0.00 0.00 0.00 3.41
505 516 7.726216 TGTCTCAGTCGATGTTATATTCCATT 58.274 34.615 0.00 0.00 0.00 3.16
506 517 7.653311 TGTCTCAGTCGATGTTATATTCCATTG 59.347 37.037 0.00 0.00 0.00 2.82
507 518 7.867909 GTCTCAGTCGATGTTATATTCCATTGA 59.132 37.037 0.00 1.84 0.00 2.57
508 519 8.588472 TCTCAGTCGATGTTATATTCCATTGAT 58.412 33.333 0.00 0.00 34.76 2.57
509 520 8.763049 TCAGTCGATGTTATATTCCATTGATC 57.237 34.615 0.00 0.00 34.76 2.92
510 521 8.588472 TCAGTCGATGTTATATTCCATTGATCT 58.412 33.333 0.00 5.12 34.76 2.75
511 522 9.212641 CAGTCGATGTTATATTCCATTGATCTT 57.787 33.333 0.00 0.00 34.76 2.40
512 523 9.212641 AGTCGATGTTATATTCCATTGATCTTG 57.787 33.333 0.00 0.00 34.76 3.02
513 524 9.208022 GTCGATGTTATATTCCATTGATCTTGA 57.792 33.333 0.00 0.00 34.76 3.02
514 525 9.777297 TCGATGTTATATTCCATTGATCTTGAA 57.223 29.630 0.00 0.00 0.00 2.69
608 619 6.243811 ACTTAGTTAAGTCTCAGTCGACTG 57.756 41.667 34.76 34.76 42.52 3.51
609 620 5.996513 ACTTAGTTAAGTCTCAGTCGACTGA 59.003 40.000 38.24 38.24 45.04 3.41
619 630 2.701107 CAGTCGACTGAGACCTAGACA 58.299 52.381 36.73 0.00 46.59 3.41
620 631 2.417239 CAGTCGACTGAGACCTAGACAC 59.583 54.545 36.73 0.00 46.59 3.67
621 632 2.038689 AGTCGACTGAGACCTAGACACA 59.961 50.000 19.30 0.00 41.83 3.72
622 633 2.160022 GTCGACTGAGACCTAGACACAC 59.840 54.545 8.70 0.00 35.22 3.82
623 634 1.469308 CGACTGAGACCTAGACACACC 59.531 57.143 0.00 0.00 0.00 4.16
659 670 7.012799 TGTGTCACATAAGCAAACTTGTATTGA 59.987 33.333 0.18 0.00 36.57 2.57
685 696 5.345202 GTGTGTGATGTTACTCCTAAGTTCG 59.655 44.000 0.00 0.00 36.92 3.95
689 700 4.219944 TGATGTTACTCCTAAGTTCGTGCT 59.780 41.667 0.00 0.00 36.92 4.40
690 701 3.909430 TGTTACTCCTAAGTTCGTGCTG 58.091 45.455 0.00 0.00 36.92 4.41
741 752 4.827835 AGAAGTCAAGAGCACAGTACAGTA 59.172 41.667 0.00 0.00 0.00 2.74
743 754 4.145807 AGTCAAGAGCACAGTACAGTACT 58.854 43.478 7.48 7.48 40.28 2.73
751 768 4.395542 AGCACAGTACAGTACTACAGTAGC 59.604 45.833 13.12 12.26 37.23 3.58
788 805 3.619242 CGTCGTGAGGGCTAGATCCTATA 60.619 52.174 5.23 0.00 34.21 1.31
789 806 4.528920 GTCGTGAGGGCTAGATCCTATAT 58.471 47.826 5.23 0.00 34.21 0.86
900 924 0.584876 CATGTCACATGCGATGCGAT 59.415 50.000 4.43 0.00 0.00 4.58
965 993 0.893270 CCAGAGCGGAGGAGATCGAT 60.893 60.000 0.00 0.00 36.56 3.59
966 994 0.521291 CAGAGCGGAGGAGATCGATC 59.479 60.000 17.91 17.91 41.38 3.69
967 995 0.953471 AGAGCGGAGGAGATCGATCG 60.953 60.000 19.33 9.36 44.99 3.69
968 996 0.951525 GAGCGGAGGAGATCGATCGA 60.952 60.000 21.86 21.86 32.33 3.59
969 997 0.322098 AGCGGAGGAGATCGATCGAT 60.322 55.000 29.76 29.76 37.59 3.59
1156 1188 2.829043 TACGTACTGCCTTGCTGCCG 62.829 60.000 0.00 0.00 33.82 5.69
1157 1189 3.804193 GTACTGCCTTGCTGCCGC 61.804 66.667 0.00 0.00 0.00 6.53
1179 1211 4.077184 CTACTTCGTGCCCGGCCA 62.077 66.667 7.03 0.00 33.95 5.36
1180 1212 4.382320 TACTTCGTGCCCGGCCAC 62.382 66.667 5.24 5.24 33.95 5.01
1206 1245 1.148273 GGATTATGCCGCTCCACCA 59.852 57.895 0.00 0.00 0.00 4.17
1208 1247 0.106708 GATTATGCCGCTCCACCAGA 59.893 55.000 0.00 0.00 0.00 3.86
1223 1262 3.487120 ACCAGAGTGAACAAGGGTTAC 57.513 47.619 0.00 0.00 37.36 2.50
1312 1361 1.205460 ACTACCTCCGCCCCAACATT 61.205 55.000 0.00 0.00 0.00 2.71
1348 1397 3.827898 GACGAGGAGGACCGGCTG 61.828 72.222 0.00 0.00 41.83 4.85
1366 1415 1.271934 CTGATATGCAGCCTCTACGCT 59.728 52.381 0.00 0.00 40.65 5.07
1724 2402 4.163458 GGTCTCATATCCAAACCAGTACCA 59.837 45.833 0.00 0.00 0.00 3.25
1843 2551 3.851128 GTGGGCGTAGGGAGCTCC 61.851 72.222 25.59 25.59 33.29 4.70
2028 2736 1.048601 GTGGACTCAGTGTTCCAGGA 58.951 55.000 14.33 0.00 32.30 3.86
2041 2749 4.222145 GTGTTCCAGGACTATGTACAAGGA 59.778 45.833 0.00 0.00 0.00 3.36
2051 2759 2.033194 GTACAAGGACACGGGCAGC 61.033 63.158 0.00 0.00 0.00 5.25
2056 2764 3.050275 GGACACGGGCAGCAGAAC 61.050 66.667 0.00 0.00 0.00 3.01
2061 2769 1.762957 ACACGGGCAGCAGAACTATAT 59.237 47.619 0.00 0.00 0.00 0.86
2062 2770 2.138320 CACGGGCAGCAGAACTATATG 58.862 52.381 0.00 0.00 0.00 1.78
2063 2771 1.762957 ACGGGCAGCAGAACTATATGT 59.237 47.619 0.00 0.00 0.00 2.29
2064 2772 2.963101 ACGGGCAGCAGAACTATATGTA 59.037 45.455 0.00 0.00 0.00 2.29
2065 2773 3.005897 ACGGGCAGCAGAACTATATGTAG 59.994 47.826 0.00 0.00 0.00 2.74
2095 2803 4.038042 TCAGACCTGAACATGATCCGTATC 59.962 45.833 0.00 0.00 36.53 2.24
2096 2804 3.322254 AGACCTGAACATGATCCGTATCC 59.678 47.826 0.00 0.00 0.00 2.59
2097 2805 2.035961 ACCTGAACATGATCCGTATCCG 59.964 50.000 0.00 0.00 0.00 4.18
2223 2951 2.158475 TGGGATATCAGTTGATTGCCCC 60.158 50.000 20.29 17.27 41.83 5.80
2304 3032 1.884579 AGCTGCTTGTCCATTGAACAG 59.115 47.619 0.00 0.00 0.00 3.16
2308 3036 1.881973 GCTTGTCCATTGAACAGCAGA 59.118 47.619 0.00 0.00 0.00 4.26
2309 3037 2.490903 GCTTGTCCATTGAACAGCAGAT 59.509 45.455 0.00 0.00 0.00 2.90
2312 3040 5.335897 GCTTGTCCATTGAACAGCAGATAAA 60.336 40.000 0.00 0.00 0.00 1.40
2313 3041 5.885230 TGTCCATTGAACAGCAGATAAAG 57.115 39.130 0.00 0.00 0.00 1.85
2314 3042 4.701651 TGTCCATTGAACAGCAGATAAAGG 59.298 41.667 0.00 0.00 0.00 3.11
2315 3043 4.096984 GTCCATTGAACAGCAGATAAAGGG 59.903 45.833 0.00 0.00 0.00 3.95
2316 3044 4.018506 TCCATTGAACAGCAGATAAAGGGA 60.019 41.667 0.00 0.00 0.00 4.20
2317 3045 4.096984 CCATTGAACAGCAGATAAAGGGAC 59.903 45.833 0.00 0.00 0.00 4.46
2318 3046 4.365514 TTGAACAGCAGATAAAGGGACA 57.634 40.909 0.00 0.00 0.00 4.02
2320 3048 5.692115 TGAACAGCAGATAAAGGGACATA 57.308 39.130 0.00 0.00 0.00 2.29
2321 3049 6.252599 TGAACAGCAGATAAAGGGACATAT 57.747 37.500 0.00 0.00 0.00 1.78
2322 3050 6.057533 TGAACAGCAGATAAAGGGACATATG 58.942 40.000 0.00 0.00 0.00 1.78
2323 3051 5.636903 ACAGCAGATAAAGGGACATATGT 57.363 39.130 8.43 8.43 0.00 2.29
2324 3052 6.747414 ACAGCAGATAAAGGGACATATGTA 57.253 37.500 8.71 0.00 0.00 2.29
2325 3053 6.763355 ACAGCAGATAAAGGGACATATGTAG 58.237 40.000 8.71 0.00 0.00 2.74
2326 3054 5.641209 CAGCAGATAAAGGGACATATGTAGC 59.359 44.000 8.71 0.00 0.00 3.58
2327 3055 5.307976 AGCAGATAAAGGGACATATGTAGCA 59.692 40.000 8.71 0.00 0.00 3.49
2329 3057 6.656693 GCAGATAAAGGGACATATGTAGCAAT 59.343 38.462 8.71 0.00 0.00 3.56
2330 3058 7.175641 GCAGATAAAGGGACATATGTAGCAATT 59.824 37.037 8.71 3.79 0.00 2.32
2331 3059 8.725148 CAGATAAAGGGACATATGTAGCAATTC 58.275 37.037 8.71 1.64 0.00 2.17
2333 3061 8.995027 ATAAAGGGACATATGTAGCAATTCAA 57.005 30.769 8.71 0.00 0.00 2.69
2337 3065 7.573710 AGGGACATATGTAGCAATTCAAACTA 58.426 34.615 8.71 0.00 0.00 2.24
2340 3068 9.884465 GGACATATGTAGCAATTCAAACTAATC 57.116 33.333 8.71 0.00 0.00 1.75
2371 3099 7.234988 AGTTAAGTACCTCATCAGTTACCAACT 59.765 37.037 0.00 0.00 44.06 3.16
2372 3100 6.435292 AAGTACCTCATCAGTTACCAACTT 57.565 37.500 0.00 0.00 40.46 2.66
2373 3101 7.549147 AAGTACCTCATCAGTTACCAACTTA 57.451 36.000 0.00 0.00 40.46 2.24
2374 3102 6.932947 AGTACCTCATCAGTTACCAACTTAC 58.067 40.000 0.00 0.00 40.46 2.34
2375 3103 5.161943 ACCTCATCAGTTACCAACTTACC 57.838 43.478 0.00 0.00 40.46 2.85
2376 3104 4.595781 ACCTCATCAGTTACCAACTTACCA 59.404 41.667 0.00 0.00 40.46 3.25
2378 3106 6.442564 ACCTCATCAGTTACCAACTTACCATA 59.557 38.462 0.00 0.00 40.46 2.74
2379 3107 6.761714 CCTCATCAGTTACCAACTTACCATAC 59.238 42.308 0.00 0.00 40.46 2.39
2432 3160 5.349824 AGATCGACAAAAAGTTCAAGAGC 57.650 39.130 0.00 0.00 0.00 4.09
2443 3171 9.226345 CAAAAAGTTCAAGAGCTAACAACTAAG 57.774 33.333 0.23 0.00 0.00 2.18
2457 3185 5.869753 ACAACTAAGCAGCAGTATTCTTG 57.130 39.130 0.00 0.00 0.00 3.02
2516 3254 6.973843 ACACATTGCATTCCATATGTGATAC 58.026 36.000 25.94 0.00 46.70 2.24
2517 3255 6.774170 ACACATTGCATTCCATATGTGATACT 59.226 34.615 25.94 7.63 46.70 2.12
2518 3256 7.938490 ACACATTGCATTCCATATGTGATACTA 59.062 33.333 25.94 0.00 46.70 1.82
2534 3272 8.171164 TGTGATACTATGTAACAGATCTGGAG 57.829 38.462 26.08 14.39 34.19 3.86
2589 3327 5.914085 TTGGATGCCAAATTAAACGTTTG 57.086 34.783 23.46 6.87 40.92 2.93
2590 3328 3.743396 TGGATGCCAAATTAAACGTTTGC 59.257 39.130 23.46 16.47 35.71 3.68
2591 3329 3.743396 GGATGCCAAATTAAACGTTTGCA 59.257 39.130 23.46 21.24 35.71 4.08
2594 3338 4.371786 TGCCAAATTAAACGTTTGCATCA 58.628 34.783 23.46 8.93 35.71 3.07
2633 3377 9.959749 GAAGACCTAAACACAAATACAAATCAA 57.040 29.630 0.00 0.00 0.00 2.57
2635 3379 8.908903 AGACCTAAACACAAATACAAATCAACA 58.091 29.630 0.00 0.00 0.00 3.33
2674 3418 2.823747 TCGCGGCCATCAGTAGTTATAT 59.176 45.455 6.13 0.00 0.00 0.86
2675 3419 2.923655 CGCGGCCATCAGTAGTTATATG 59.076 50.000 2.24 0.00 0.00 1.78
2707 3452 7.827819 TGTAGTTCATTACACACTTATCTGC 57.172 36.000 0.00 0.00 0.00 4.26
2726 3471 1.379044 CCCGGGCATTTTCAGCTCT 60.379 57.895 8.08 0.00 0.00 4.09
2730 3475 1.831580 GGGCATTTTCAGCTCTCACT 58.168 50.000 0.00 0.00 0.00 3.41
2741 3486 1.274728 AGCTCTCACTGCGAGACAAAT 59.725 47.619 0.00 0.00 46.18 2.32
2766 3514 1.064166 CACTCAATCATGCCCCCTCTT 60.064 52.381 0.00 0.00 0.00 2.85
2785 3533 0.755698 TAGGAGGAGTCGGGATGCAC 60.756 60.000 0.00 0.00 0.00 4.57
2828 3576 1.334149 GGTTTTGCTCTTCACACTCGC 60.334 52.381 0.00 0.00 0.00 5.03
2846 3594 0.250513 GCGATCCTTGTCCTTCTGGT 59.749 55.000 0.00 0.00 34.23 4.00
2865 3613 2.421529 GGTGGGCTTCCTGTATTACCAG 60.422 54.545 0.00 0.00 0.00 4.00
2879 3627 3.781760 CCAGCATTTGCCACTGGT 58.218 55.556 0.00 0.00 44.91 4.00
2898 3646 7.275183 CACTGGTCTCATCATTATTTGGAGTA 58.725 38.462 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.535540 TGAAAAACGCATTAGGCCCTATATA 58.464 36.000 0.00 0.00 40.31 0.86
1 2 5.381757 TGAAAAACGCATTAGGCCCTATAT 58.618 37.500 0.00 0.00 40.31 0.86
4 5 3.074675 TGAAAAACGCATTAGGCCCTA 57.925 42.857 0.00 0.00 40.31 3.53
5 6 1.917872 TGAAAAACGCATTAGGCCCT 58.082 45.000 0.00 0.00 40.31 5.19
6 7 2.734276 TTGAAAAACGCATTAGGCCC 57.266 45.000 0.00 0.00 40.31 5.80
7 8 3.185594 GGTTTTGAAAAACGCATTAGGCC 59.814 43.478 11.43 0.00 47.00 5.19
9 10 4.045783 ACGGTTTTGAAAAACGCATTAGG 58.954 39.130 25.88 0.75 47.00 2.69
10 11 4.973663 AGACGGTTTTGAAAAACGCATTAG 59.026 37.500 25.88 1.46 47.00 1.73
11 12 4.922719 AGACGGTTTTGAAAAACGCATTA 58.077 34.783 25.88 0.00 47.00 1.90
12 13 3.776340 AGACGGTTTTGAAAAACGCATT 58.224 36.364 25.88 8.64 47.00 3.56
13 14 3.430333 AGACGGTTTTGAAAAACGCAT 57.570 38.095 25.88 13.16 47.00 4.73
14 15 2.923605 AGACGGTTTTGAAAAACGCA 57.076 40.000 25.88 0.00 47.00 5.24
15 16 3.608939 TCAAAGACGGTTTTGAAAAACGC 59.391 39.130 25.88 18.38 47.00 4.84
16 17 4.854839 AGTCAAAGACGGTTTTGAAAAACG 59.145 37.500 24.58 24.58 45.62 3.60
17 18 7.980742 ATAGTCAAAGACGGTTTTGAAAAAC 57.019 32.000 15.31 9.66 45.62 2.43
18 19 8.244802 TCAATAGTCAAAGACGGTTTTGAAAAA 58.755 29.630 15.31 7.12 45.62 1.94
19 20 7.698970 GTCAATAGTCAAAGACGGTTTTGAAAA 59.301 33.333 15.31 8.99 45.62 2.29
20 21 7.148222 TGTCAATAGTCAAAGACGGTTTTGAAA 60.148 33.333 15.31 9.26 45.62 2.69
21 22 6.316640 TGTCAATAGTCAAAGACGGTTTTGAA 59.683 34.615 15.31 4.98 45.62 2.69
22 23 5.818336 TGTCAATAGTCAAAGACGGTTTTGA 59.182 36.000 11.17 11.17 42.93 2.69
23 24 6.055231 TGTCAATAGTCAAAGACGGTTTTG 57.945 37.500 7.37 7.37 37.67 2.44
24 25 6.540914 TCTTGTCAATAGTCAAAGACGGTTTT 59.459 34.615 0.00 0.00 37.67 2.43
25 26 6.053005 TCTTGTCAATAGTCAAAGACGGTTT 58.947 36.000 0.00 0.00 37.67 3.27
26 27 5.607477 TCTTGTCAATAGTCAAAGACGGTT 58.393 37.500 0.00 0.00 37.67 4.44
27 28 5.209818 TCTTGTCAATAGTCAAAGACGGT 57.790 39.130 0.00 0.00 37.67 4.83
28 29 6.727824 AATCTTGTCAATAGTCAAAGACGG 57.272 37.500 0.00 0.00 37.67 4.79
91 92 5.803020 ATTCGTATGTGAAAGGAGCTTTC 57.197 39.130 0.00 0.00 46.88 2.62
92 93 6.206634 TCAAATTCGTATGTGAAAGGAGCTTT 59.793 34.615 0.00 0.00 36.29 3.51
93 94 5.705441 TCAAATTCGTATGTGAAAGGAGCTT 59.295 36.000 0.00 0.00 0.00 3.74
94 95 5.122396 GTCAAATTCGTATGTGAAAGGAGCT 59.878 40.000 0.00 0.00 29.80 4.09
95 96 5.324697 GTCAAATTCGTATGTGAAAGGAGC 58.675 41.667 0.00 0.00 29.80 4.70
96 97 5.445939 CGGTCAAATTCGTATGTGAAAGGAG 60.446 44.000 0.00 0.00 29.80 3.69
97 98 4.390603 CGGTCAAATTCGTATGTGAAAGGA 59.609 41.667 0.00 0.00 29.80 3.36
98 99 4.153475 ACGGTCAAATTCGTATGTGAAAGG 59.847 41.667 0.00 0.00 37.88 3.11
99 100 5.277601 ACGGTCAAATTCGTATGTGAAAG 57.722 39.130 0.00 0.00 37.88 2.62
100 101 6.971527 ATACGGTCAAATTCGTATGTGAAA 57.028 33.333 8.60 0.00 46.56 2.69
107 108 6.867816 ACACAAAGTATACGGTCAAATTCGTA 59.132 34.615 0.00 0.33 44.31 3.43
108 109 5.697633 ACACAAAGTATACGGTCAAATTCGT 59.302 36.000 0.00 0.00 42.55 3.85
109 110 6.160664 ACACAAAGTATACGGTCAAATTCG 57.839 37.500 0.00 0.00 0.00 3.34
110 111 8.715088 ACTTACACAAAGTATACGGTCAAATTC 58.285 33.333 0.00 0.00 46.85 2.17
111 112 8.611654 ACTTACACAAAGTATACGGTCAAATT 57.388 30.769 0.00 0.00 46.85 1.82
154 155 8.780249 GGCTAACTTTGACAAAATGTTAGAGTA 58.220 33.333 27.70 7.69 38.12 2.59
155 156 7.502561 AGGCTAACTTTGACAAAATGTTAGAGT 59.497 33.333 27.70 17.75 38.12 3.24
156 157 7.875971 AGGCTAACTTTGACAAAATGTTAGAG 58.124 34.615 27.70 15.50 38.12 2.43
157 158 7.307751 CGAGGCTAACTTTGACAAAATGTTAGA 60.308 37.037 27.70 8.69 38.12 2.10
158 159 6.797033 CGAGGCTAACTTTGACAAAATGTTAG 59.203 38.462 23.22 23.22 38.44 2.34
159 160 6.483974 TCGAGGCTAACTTTGACAAAATGTTA 59.516 34.615 1.62 7.21 0.00 2.41
160 161 5.298276 TCGAGGCTAACTTTGACAAAATGTT 59.702 36.000 1.62 6.45 0.00 2.71
161 162 4.819630 TCGAGGCTAACTTTGACAAAATGT 59.180 37.500 1.62 0.00 0.00 2.71
162 163 5.356882 TCGAGGCTAACTTTGACAAAATG 57.643 39.130 1.62 0.00 0.00 2.32
163 164 6.385649 TTTCGAGGCTAACTTTGACAAAAT 57.614 33.333 1.62 0.00 0.00 1.82
164 165 5.821516 TTTCGAGGCTAACTTTGACAAAA 57.178 34.783 1.62 0.00 0.00 2.44
165 166 5.821516 TTTTCGAGGCTAACTTTGACAAA 57.178 34.783 0.00 0.00 0.00 2.83
166 167 5.575019 GTTTTTCGAGGCTAACTTTGACAA 58.425 37.500 0.00 0.00 0.00 3.18
167 168 4.260456 CGTTTTTCGAGGCTAACTTTGACA 60.260 41.667 0.00 0.00 42.86 3.58
168 169 4.209112 CGTTTTTCGAGGCTAACTTTGAC 58.791 43.478 0.00 0.00 42.86 3.18
169 170 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
170 171 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
171 172 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
172 173 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
173 174 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
174 175 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
175 176 4.092383 GTCTAATGCGTTTTTCGAGGCTAA 59.908 41.667 0.00 0.00 42.86 3.09
176 177 3.615496 GTCTAATGCGTTTTTCGAGGCTA 59.385 43.478 0.00 0.00 42.86 3.93
177 178 2.415512 GTCTAATGCGTTTTTCGAGGCT 59.584 45.455 0.00 0.00 42.86 4.58
178 179 2.475685 GGTCTAATGCGTTTTTCGAGGC 60.476 50.000 0.00 0.00 42.86 4.70
179 180 2.095372 GGGTCTAATGCGTTTTTCGAGG 59.905 50.000 0.00 0.00 42.86 4.63
180 181 3.000727 AGGGTCTAATGCGTTTTTCGAG 58.999 45.455 0.00 0.00 42.86 4.04
181 182 2.739913 CAGGGTCTAATGCGTTTTTCGA 59.260 45.455 0.00 0.00 42.86 3.71
182 183 2.482721 ACAGGGTCTAATGCGTTTTTCG 59.517 45.455 0.00 0.00 43.12 3.46
183 184 5.813080 ATACAGGGTCTAATGCGTTTTTC 57.187 39.130 0.00 0.00 0.00 2.29
184 185 6.646267 TCTATACAGGGTCTAATGCGTTTTT 58.354 36.000 0.00 0.00 0.00 1.94
185 186 6.229936 TCTATACAGGGTCTAATGCGTTTT 57.770 37.500 0.00 0.00 0.00 2.43
186 187 5.864418 TCTATACAGGGTCTAATGCGTTT 57.136 39.130 0.00 0.00 0.00 3.60
187 188 5.279506 CCATCTATACAGGGTCTAATGCGTT 60.280 44.000 0.00 0.00 0.00 4.84
188 189 4.220821 CCATCTATACAGGGTCTAATGCGT 59.779 45.833 0.00 0.00 0.00 5.24
189 190 4.462834 TCCATCTATACAGGGTCTAATGCG 59.537 45.833 0.00 0.00 0.00 4.73
190 191 6.360370 TTCCATCTATACAGGGTCTAATGC 57.640 41.667 0.00 0.00 0.00 3.56
191 192 6.726299 TCCTTCCATCTATACAGGGTCTAATG 59.274 42.308 0.00 0.00 0.00 1.90
192 193 6.875469 TCCTTCCATCTATACAGGGTCTAAT 58.125 40.000 0.00 0.00 0.00 1.73
193 194 6.289482 TCCTTCCATCTATACAGGGTCTAA 57.711 41.667 0.00 0.00 0.00 2.10
194 195 5.222358 CCTCCTTCCATCTATACAGGGTCTA 60.222 48.000 0.00 0.00 0.00 2.59
195 196 4.449968 CCTCCTTCCATCTATACAGGGTCT 60.450 50.000 0.00 0.00 0.00 3.85
196 197 3.835395 CCTCCTTCCATCTATACAGGGTC 59.165 52.174 0.00 0.00 0.00 4.46
197 198 3.440154 CCCTCCTTCCATCTATACAGGGT 60.440 52.174 0.00 0.00 35.49 4.34
198 199 3.177228 CCCTCCTTCCATCTATACAGGG 58.823 54.545 0.00 0.00 33.59 4.45
199 200 4.093011 CTCCCTCCTTCCATCTATACAGG 58.907 52.174 0.00 0.00 0.00 4.00
200 201 4.746466 ACTCCCTCCTTCCATCTATACAG 58.254 47.826 0.00 0.00 0.00 2.74
201 202 4.834406 ACTCCCTCCTTCCATCTATACA 57.166 45.455 0.00 0.00 0.00 2.29
202 203 5.894653 AGTACTCCCTCCTTCCATCTATAC 58.105 45.833 0.00 0.00 0.00 1.47
203 204 6.547396 AAGTACTCCCTCCTTCCATCTATA 57.453 41.667 0.00 0.00 0.00 1.31
204 205 5.426325 AAGTACTCCCTCCTTCCATCTAT 57.574 43.478 0.00 0.00 0.00 1.98
205 206 4.901785 AAGTACTCCCTCCTTCCATCTA 57.098 45.455 0.00 0.00 0.00 1.98
206 207 3.786213 AAGTACTCCCTCCTTCCATCT 57.214 47.619 0.00 0.00 0.00 2.90
207 208 6.502074 AATTAAGTACTCCCTCCTTCCATC 57.498 41.667 0.00 0.00 0.00 3.51
208 209 6.353951 CCAAATTAAGTACTCCCTCCTTCCAT 60.354 42.308 0.00 0.00 0.00 3.41
209 210 5.045140 CCAAATTAAGTACTCCCTCCTTCCA 60.045 44.000 0.00 0.00 0.00 3.53
210 211 5.437946 CCAAATTAAGTACTCCCTCCTTCC 58.562 45.833 0.00 0.00 0.00 3.46
211 212 4.882427 GCCAAATTAAGTACTCCCTCCTTC 59.118 45.833 0.00 0.00 0.00 3.46
212 213 4.325109 GGCCAAATTAAGTACTCCCTCCTT 60.325 45.833 0.00 0.00 0.00 3.36
213 214 3.202373 GGCCAAATTAAGTACTCCCTCCT 59.798 47.826 0.00 0.00 0.00 3.69
214 215 3.053917 TGGCCAAATTAAGTACTCCCTCC 60.054 47.826 0.61 0.00 0.00 4.30
215 216 4.080526 TCTGGCCAAATTAAGTACTCCCTC 60.081 45.833 7.01 0.00 0.00 4.30
216 217 3.850173 TCTGGCCAAATTAAGTACTCCCT 59.150 43.478 7.01 0.00 0.00 4.20
217 218 4.080526 TCTCTGGCCAAATTAAGTACTCCC 60.081 45.833 7.01 0.00 0.00 4.30
218 219 5.099042 TCTCTGGCCAAATTAAGTACTCC 57.901 43.478 7.01 0.00 0.00 3.85
219 220 7.448748 TTTTCTCTGGCCAAATTAAGTACTC 57.551 36.000 7.01 0.00 0.00 2.59
220 221 7.833285 TTTTTCTCTGGCCAAATTAAGTACT 57.167 32.000 7.01 0.00 0.00 2.73
242 243 4.463891 CCCATTGTGACTAGCCTCATTTTT 59.536 41.667 0.00 0.00 0.00 1.94
243 244 4.019174 CCCATTGTGACTAGCCTCATTTT 58.981 43.478 0.00 0.00 0.00 1.82
244 245 3.624777 CCCATTGTGACTAGCCTCATTT 58.375 45.455 0.00 0.00 0.00 2.32
245 246 2.684927 GCCCATTGTGACTAGCCTCATT 60.685 50.000 0.00 0.00 0.00 2.57
246 247 1.133976 GCCCATTGTGACTAGCCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
247 248 0.253044 GCCCATTGTGACTAGCCTCA 59.747 55.000 0.00 0.00 0.00 3.86
248 249 0.253044 TGCCCATTGTGACTAGCCTC 59.747 55.000 0.00 0.00 0.00 4.70
249 250 0.698238 TTGCCCATTGTGACTAGCCT 59.302 50.000 0.00 0.00 0.00 4.58
250 251 1.098050 CTTGCCCATTGTGACTAGCC 58.902 55.000 0.00 0.00 0.00 3.93
251 252 2.113860 TCTTGCCCATTGTGACTAGC 57.886 50.000 0.00 0.00 0.00 3.42
252 253 3.411446 TGTTCTTGCCCATTGTGACTAG 58.589 45.455 0.00 0.00 0.00 2.57
253 254 3.500448 TGTTCTTGCCCATTGTGACTA 57.500 42.857 0.00 0.00 0.00 2.59
254 255 2.363306 TGTTCTTGCCCATTGTGACT 57.637 45.000 0.00 0.00 0.00 3.41
268 269 7.396623 AGTGTGTAGGTTACTAGCTTATGTTCT 59.603 37.037 0.00 0.00 33.36 3.01
433 444 9.638300 GAGACGTAGCAAAACTGATATTTAATG 57.362 33.333 0.00 0.00 0.00 1.90
434 445 9.378551 TGAGACGTAGCAAAACTGATATTTAAT 57.621 29.630 0.00 0.00 0.00 1.40
435 446 8.766000 TGAGACGTAGCAAAACTGATATTTAA 57.234 30.769 0.00 0.00 0.00 1.52
436 447 8.033038 ACTGAGACGTAGCAAAACTGATATTTA 58.967 33.333 0.00 0.00 0.00 1.40
437 448 6.874134 ACTGAGACGTAGCAAAACTGATATTT 59.126 34.615 0.00 0.00 0.00 1.40
438 449 6.398918 ACTGAGACGTAGCAAAACTGATATT 58.601 36.000 0.00 0.00 0.00 1.28
439 450 5.967088 ACTGAGACGTAGCAAAACTGATAT 58.033 37.500 0.00 0.00 0.00 1.63
440 451 5.386958 ACTGAGACGTAGCAAAACTGATA 57.613 39.130 0.00 0.00 0.00 2.15
441 452 4.238514 GACTGAGACGTAGCAAAACTGAT 58.761 43.478 0.00 0.00 0.00 2.90
442 453 3.639538 GACTGAGACGTAGCAAAACTGA 58.360 45.455 0.00 0.00 0.00 3.41
443 454 2.405357 CGACTGAGACGTAGCAAAACTG 59.595 50.000 0.00 0.00 0.00 3.16
444 455 2.292569 TCGACTGAGACGTAGCAAAACT 59.707 45.455 4.08 0.00 0.00 2.66
445 456 2.404361 GTCGACTGAGACGTAGCAAAAC 59.596 50.000 8.70 0.00 0.00 2.43
446 457 2.292569 AGTCGACTGAGACGTAGCAAAA 59.707 45.455 19.30 0.00 45.26 2.44
447 458 1.878088 AGTCGACTGAGACGTAGCAAA 59.122 47.619 19.30 0.00 45.26 3.68
448 459 1.520494 AGTCGACTGAGACGTAGCAA 58.480 50.000 19.30 0.00 45.26 3.91
449 460 1.520494 AAGTCGACTGAGACGTAGCA 58.480 50.000 20.85 0.00 45.26 3.49
450 461 2.928757 TCTAAGTCGACTGAGACGTAGC 59.071 50.000 26.12 0.00 45.92 3.58
451 462 4.503767 GTCTAAGTCGACTGAGACGTAG 57.496 50.000 36.15 24.24 46.90 3.51
456 467 3.661944 ACGAAGTCTAAGTCGACTGAGA 58.338 45.455 26.12 26.12 43.14 3.27
457 468 4.407496 AACGAAGTCTAAGTCGACTGAG 57.593 45.455 22.32 22.32 45.00 3.35
458 469 5.410746 ACATAACGAAGTCTAAGTCGACTGA 59.589 40.000 20.85 11.31 45.00 3.41
459 470 5.629097 ACATAACGAAGTCTAAGTCGACTG 58.371 41.667 20.85 7.79 45.00 3.51
460 471 5.642919 AGACATAACGAAGTCTAAGTCGACT 59.357 40.000 13.58 13.58 45.00 4.18
461 472 5.867166 AGACATAACGAAGTCTAAGTCGAC 58.133 41.667 7.70 7.70 45.00 4.20
462 473 5.640783 TGAGACATAACGAAGTCTAAGTCGA 59.359 40.000 0.00 0.00 45.00 4.20
463 474 5.866075 TGAGACATAACGAAGTCTAAGTCG 58.134 41.667 0.00 0.00 45.00 4.18
465 476 6.821031 ACTGAGACATAACGAAGTCTAAGT 57.179 37.500 6.74 6.74 46.82 2.24
466 477 5.960683 CGACTGAGACATAACGAAGTCTAAG 59.039 44.000 5.59 5.59 45.00 2.18
467 478 5.640783 TCGACTGAGACATAACGAAGTCTAA 59.359 40.000 0.00 0.00 45.00 2.10
468 479 5.173664 TCGACTGAGACATAACGAAGTCTA 58.826 41.667 0.00 0.00 45.00 2.59
469 480 4.001652 TCGACTGAGACATAACGAAGTCT 58.998 43.478 0.00 0.00 45.00 3.24
470 481 4.337985 TCGACTGAGACATAACGAAGTC 57.662 45.455 0.00 0.00 45.00 3.01
472 483 4.663166 ACATCGACTGAGACATAACGAAG 58.337 43.478 0.00 0.00 33.77 3.79
473 484 4.696899 ACATCGACTGAGACATAACGAA 57.303 40.909 0.00 0.00 33.77 3.85
474 485 4.696899 AACATCGACTGAGACATAACGA 57.303 40.909 0.00 0.00 0.00 3.85
475 486 8.729529 AATATAACATCGACTGAGACATAACG 57.270 34.615 0.00 0.00 0.00 3.18
476 487 9.130312 GGAATATAACATCGACTGAGACATAAC 57.870 37.037 0.00 0.00 0.00 1.89
477 488 8.856103 TGGAATATAACATCGACTGAGACATAA 58.144 33.333 0.00 0.00 0.00 1.90
478 489 8.404107 TGGAATATAACATCGACTGAGACATA 57.596 34.615 0.00 0.00 0.00 2.29
479 490 7.290110 TGGAATATAACATCGACTGAGACAT 57.710 36.000 0.00 0.00 0.00 3.06
480 491 6.709018 TGGAATATAACATCGACTGAGACA 57.291 37.500 0.00 0.00 0.00 3.41
481 492 7.867909 TCAATGGAATATAACATCGACTGAGAC 59.132 37.037 0.00 0.00 0.00 3.36
482 493 7.951591 TCAATGGAATATAACATCGACTGAGA 58.048 34.615 0.00 0.00 0.00 3.27
483 494 8.768957 ATCAATGGAATATAACATCGACTGAG 57.231 34.615 0.00 0.00 0.00 3.35
484 495 8.588472 AGATCAATGGAATATAACATCGACTGA 58.412 33.333 0.00 0.00 0.00 3.41
485 496 8.768957 AGATCAATGGAATATAACATCGACTG 57.231 34.615 0.00 0.00 0.00 3.51
486 497 9.212641 CAAGATCAATGGAATATAACATCGACT 57.787 33.333 0.00 0.00 0.00 4.18
487 498 9.208022 TCAAGATCAATGGAATATAACATCGAC 57.792 33.333 0.00 0.00 0.00 4.20
488 499 9.777297 TTCAAGATCAATGGAATATAACATCGA 57.223 29.630 0.00 0.00 0.00 3.59
570 581 9.298250 ACTTAACTAAGTCTCACTCAAGTGATA 57.702 33.333 12.96 3.87 44.68 2.15
571 582 8.184304 ACTTAACTAAGTCTCACTCAAGTGAT 57.816 34.615 12.96 1.75 44.68 3.06
572 583 7.584122 ACTTAACTAAGTCTCACTCAAGTGA 57.416 36.000 12.07 12.07 46.00 3.41
599 610 2.417239 GTGTCTAGGTCTCAGTCGACTG 59.583 54.545 34.76 34.76 45.08 3.51
600 611 2.038689 TGTGTCTAGGTCTCAGTCGACT 59.961 50.000 13.58 13.58 34.38 4.18
601 612 2.160022 GTGTGTCTAGGTCTCAGTCGAC 59.840 54.545 7.70 7.70 0.00 4.20
602 613 2.424557 GTGTGTCTAGGTCTCAGTCGA 58.575 52.381 0.00 0.00 0.00 4.20
603 614 1.469308 GGTGTGTCTAGGTCTCAGTCG 59.531 57.143 0.00 0.00 0.00 4.18
604 615 1.819903 GGGTGTGTCTAGGTCTCAGTC 59.180 57.143 0.00 0.00 0.00 3.51
605 616 1.147191 TGGGTGTGTCTAGGTCTCAGT 59.853 52.381 0.00 0.00 0.00 3.41
606 617 1.924731 TGGGTGTGTCTAGGTCTCAG 58.075 55.000 0.00 0.00 0.00 3.35
607 618 2.623418 ATGGGTGTGTCTAGGTCTCA 57.377 50.000 0.00 0.00 0.00 3.27
608 619 5.416271 TTTAATGGGTGTGTCTAGGTCTC 57.584 43.478 0.00 0.00 0.00 3.36
609 620 7.127339 ACATATTTAATGGGTGTGTCTAGGTCT 59.873 37.037 0.00 0.00 0.00 3.85
610 621 7.226720 CACATATTTAATGGGTGTGTCTAGGTC 59.773 40.741 9.93 0.00 36.37 3.85
611 622 7.054124 CACATATTTAATGGGTGTGTCTAGGT 58.946 38.462 9.93 0.00 36.37 3.08
612 623 7.496529 CACATATTTAATGGGTGTGTCTAGG 57.503 40.000 9.93 0.00 36.37 3.02
618 629 6.507958 TGTGACACATATTTAATGGGTGTG 57.492 37.500 16.92 15.38 42.27 3.82
619 630 8.815565 TTATGTGACACATATTTAATGGGTGT 57.184 30.769 25.12 13.51 40.41 4.16
620 631 7.862372 GCTTATGTGACACATATTTAATGGGTG 59.138 37.037 25.12 5.26 40.41 4.61
621 632 7.559533 TGCTTATGTGACACATATTTAATGGGT 59.440 33.333 25.12 2.52 40.41 4.51
622 633 7.939782 TGCTTATGTGACACATATTTAATGGG 58.060 34.615 25.12 11.29 40.41 4.00
623 634 9.800433 TTTGCTTATGTGACACATATTTAATGG 57.200 29.630 25.12 12.34 40.41 3.16
637 648 8.075574 CACTTCAATACAAGTTTGCTTATGTGA 58.924 33.333 0.00 0.00 34.17 3.58
659 670 6.420913 ACTTAGGAGTAACATCACACACTT 57.579 37.500 0.00 0.00 33.32 3.16
685 696 1.204467 CTCCCTCTCAGTCTTCAGCAC 59.796 57.143 0.00 0.00 0.00 4.40
689 700 1.599606 GCGCTCCCTCTCAGTCTTCA 61.600 60.000 0.00 0.00 0.00 3.02
690 701 1.140804 GCGCTCCCTCTCAGTCTTC 59.859 63.158 0.00 0.00 0.00 2.87
741 752 3.764972 GGAGGAGAAAGTGCTACTGTAGT 59.235 47.826 15.71 0.00 0.00 2.73
743 754 3.097614 GGGAGGAGAAAGTGCTACTGTA 58.902 50.000 0.00 0.00 0.00 2.74
751 768 0.388649 CGACGTGGGAGGAGAAAGTG 60.389 60.000 0.00 0.00 0.00 3.16
788 805 2.162681 GGCATTTTATAGCGAGGGCAT 58.837 47.619 0.00 0.00 43.41 4.40
789 806 1.604604 GGCATTTTATAGCGAGGGCA 58.395 50.000 0.00 0.00 43.41 5.36
821 838 0.618458 GGATGGCTGGTGAGGTTGTA 59.382 55.000 0.00 0.00 0.00 2.41
1029 1057 2.034221 GGGCCCTTCTTCACGCTT 59.966 61.111 17.04 0.00 0.00 4.68
1162 1194 4.077184 TGGCCGGGCACGAAGTAG 62.077 66.667 29.27 0.00 41.61 2.57
1163 1195 4.382320 GTGGCCGGGCACGAAGTA 62.382 66.667 40.73 11.97 41.61 2.24
1176 1208 3.767630 ATAATCCGTGGGCCGTGGC 62.768 63.158 8.91 1.16 41.06 5.01
1177 1209 1.891919 CATAATCCGTGGGCCGTGG 60.892 63.158 7.51 7.51 33.66 4.94
1178 1210 2.542907 GCATAATCCGTGGGCCGTG 61.543 63.158 0.00 0.00 33.66 4.94
1179 1211 2.203153 GCATAATCCGTGGGCCGT 60.203 61.111 0.00 0.00 33.66 5.68
1180 1212 2.978010 GGCATAATCCGTGGGCCG 60.978 66.667 0.00 0.00 34.56 6.13
1181 1213 2.978010 CGGCATAATCCGTGGGCC 60.978 66.667 0.00 0.00 44.18 5.80
1191 1223 1.264749 ACTCTGGTGGAGCGGCATAA 61.265 55.000 1.45 0.00 45.48 1.90
1198 1234 1.517242 CTTGTTCACTCTGGTGGAGC 58.483 55.000 0.00 0.00 45.48 4.70
1206 1245 6.620877 TCATATGTAACCCTTGTTCACTCT 57.379 37.500 1.90 0.00 35.87 3.24
1208 1247 6.430000 GTGTTCATATGTAACCCTTGTTCACT 59.570 38.462 1.90 0.00 35.87 3.41
1213 1252 4.901868 ACGTGTTCATATGTAACCCTTGT 58.098 39.130 1.90 0.91 0.00 3.16
1223 1262 3.242837 CCCAGCATCAACGTGTTCATATG 60.243 47.826 0.00 0.00 0.00 1.78
1348 1397 2.733858 GCTAGCGTAGAGGCTGCATATC 60.734 54.545 0.00 0.00 44.50 1.63
1366 1415 2.434843 CCACCTGCTCCCGATGCTA 61.435 63.158 0.00 0.00 0.00 3.49
1484 1533 2.407616 CAGCGCGTACCTGATCGA 59.592 61.111 8.43 0.00 32.03 3.59
1486 1535 2.962253 GGCAGCGCGTACCTGATC 60.962 66.667 15.18 3.94 32.03 2.92
2028 2736 1.206371 GCCCGTGTCCTTGTACATAGT 59.794 52.381 0.00 0.00 0.00 2.12
2041 2749 1.191535 TATAGTTCTGCTGCCCGTGT 58.808 50.000 0.00 0.00 0.00 4.49
2051 2759 8.759641 GTCTGAAATGCACTACATATAGTTCTG 58.240 37.037 0.00 0.00 39.80 3.02
2056 2764 7.436933 TCAGGTCTGAAATGCACTACATATAG 58.563 38.462 0.00 0.00 35.16 1.31
2061 2769 4.350368 TTCAGGTCTGAAATGCACTACA 57.650 40.909 10.61 0.00 45.56 2.74
2165 2882 8.298030 TGCATTTACGATACACTCATATCAAG 57.702 34.615 0.00 0.00 31.98 3.02
2229 2957 3.844577 GCAGTGAGCATGAGTTTCATT 57.155 42.857 0.00 0.00 44.79 2.57
2251 2979 2.102578 CATCCCCTGGCTTTAAACTGG 58.897 52.381 0.00 0.00 0.00 4.00
2304 3032 5.551233 TGCTACATATGTCCCTTTATCTGC 58.449 41.667 12.68 3.61 0.00 4.26
2308 3036 8.995027 TTGAATTGCTACATATGTCCCTTTAT 57.005 30.769 12.68 0.00 0.00 1.40
2309 3037 8.682710 GTTTGAATTGCTACATATGTCCCTTTA 58.317 33.333 12.68 0.00 0.00 1.85
2312 3040 6.426587 AGTTTGAATTGCTACATATGTCCCT 58.573 36.000 12.68 0.00 0.00 4.20
2313 3041 6.699575 AGTTTGAATTGCTACATATGTCCC 57.300 37.500 12.68 5.20 0.00 4.46
2314 3042 9.884465 GATTAGTTTGAATTGCTACATATGTCC 57.116 33.333 12.68 5.57 0.00 4.02
2315 3043 9.884465 GGATTAGTTTGAATTGCTACATATGTC 57.116 33.333 12.68 0.00 0.00 3.06
2316 3044 9.407380 TGGATTAGTTTGAATTGCTACATATGT 57.593 29.630 13.93 13.93 0.00 2.29
2320 3048 9.643693 CTTTTGGATTAGTTTGAATTGCTACAT 57.356 29.630 0.00 0.00 0.00 2.29
2321 3049 8.637986 ACTTTTGGATTAGTTTGAATTGCTACA 58.362 29.630 0.00 0.00 0.00 2.74
2322 3050 9.476202 AACTTTTGGATTAGTTTGAATTGCTAC 57.524 29.630 0.00 0.00 30.72 3.58
2330 3058 9.856162 AGGTACTTAACTTTTGGATTAGTTTGA 57.144 29.630 0.00 0.00 36.16 2.69
2337 3065 8.164070 ACTGATGAGGTACTTAACTTTTGGATT 58.836 33.333 0.00 0.00 41.55 3.01
2340 3068 7.745620 AACTGATGAGGTACTTAACTTTTGG 57.254 36.000 0.00 0.00 41.55 3.28
2343 3071 7.970102 TGGTAACTGATGAGGTACTTAACTTT 58.030 34.615 7.35 0.00 41.55 2.66
2371 3099 0.325272 TGCGTGCTTGGGTATGGTAA 59.675 50.000 0.00 0.00 0.00 2.85
2372 3100 0.544223 ATGCGTGCTTGGGTATGGTA 59.456 50.000 0.00 0.00 0.00 3.25
2373 3101 1.031571 CATGCGTGCTTGGGTATGGT 61.032 55.000 0.00 0.00 0.00 3.55
2374 3102 1.729276 CATGCGTGCTTGGGTATGG 59.271 57.895 0.00 0.00 0.00 2.74
2394 3122 5.047306 TGTCGATCTTTCTACCATTGTCACT 60.047 40.000 0.00 0.00 0.00 3.41
2432 3160 7.459486 CAAGAATACTGCTGCTTAGTTGTTAG 58.541 38.462 0.00 0.00 0.00 2.34
2443 3171 8.494347 GCTATATATATGCAAGAATACTGCTGC 58.506 37.037 5.44 0.00 32.43 5.25
2516 3254 5.982516 GCTGTTCTCCAGATCTGTTACATAG 59.017 44.000 21.11 12.84 44.49 2.23
2517 3255 5.422012 TGCTGTTCTCCAGATCTGTTACATA 59.578 40.000 21.11 8.60 44.49 2.29
2518 3256 4.223700 TGCTGTTCTCCAGATCTGTTACAT 59.776 41.667 21.11 0.00 44.49 2.29
2534 3272 1.589716 GGTGCCACCTGATGCTGTTC 61.590 60.000 6.63 0.00 34.73 3.18
2567 3305 4.212214 GCAAACGTTTAATTTGGCATCCAA 59.788 37.500 14.20 0.00 42.29 3.53
2590 3328 4.926238 GGTCTTCTACCGCATAGATTGATG 59.074 45.833 0.00 0.00 39.75 3.07
2591 3329 5.140747 GGTCTTCTACCGCATAGATTGAT 57.859 43.478 0.00 0.00 39.75 2.57
2607 3351 9.959749 TTGATTTGTATTTGTGTTTAGGTCTTC 57.040 29.630 0.00 0.00 0.00 2.87
2620 3364 7.906611 TCGTTTGTCTGTTGATTTGTATTTG 57.093 32.000 0.00 0.00 0.00 2.32
2633 3377 5.618561 GCGATTCTTTATTCGTTTGTCTGT 58.381 37.500 0.00 0.00 37.66 3.41
2635 3379 4.201685 CCGCGATTCTTTATTCGTTTGTCT 60.202 41.667 8.23 0.00 37.66 3.41
2674 3418 2.831685 AATGAACTACACGGTGAGCA 57.168 45.000 16.29 5.50 0.00 4.26
2675 3419 3.367025 GTGTAATGAACTACACGGTGAGC 59.633 47.826 16.29 0.00 41.56 4.26
2707 3452 2.362889 AGCTGAAAATGCCCGGGG 60.363 61.111 25.28 9.31 0.00 5.73
2726 3471 2.289382 TGCCTTATTTGTCTCGCAGTGA 60.289 45.455 0.00 0.00 0.00 3.41
2730 3475 2.289382 TGAGTGCCTTATTTGTCTCGCA 60.289 45.455 0.00 0.00 0.00 5.10
2766 3514 0.755698 GTGCATCCCGACTCCTCCTA 60.756 60.000 0.00 0.00 0.00 2.94
2785 3533 1.772966 CTTTGTTTGTAGTTGTGCGCG 59.227 47.619 0.00 0.00 0.00 6.86
2789 3537 4.712122 ACCACCTTTGTTTGTAGTTGTG 57.288 40.909 0.00 0.00 0.00 3.33
2828 3576 1.406069 CCACCAGAAGGACAAGGATCG 60.406 57.143 0.00 0.00 38.69 3.69
2846 3594 1.211949 GCTGGTAATACAGGAAGCCCA 59.788 52.381 0.00 0.00 38.90 5.36
2865 3613 1.133790 GATGAGACCAGTGGCAAATGC 59.866 52.381 9.78 0.00 41.14 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.