Multiple sequence alignment - TraesCS5D01G225600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G225600 chr5D 100.000 2459 0 0 1 2459 333977935 333980393 0.000000e+00 4542
1 TraesCS5D01G225600 chr5D 97.884 189 3 1 2266 2453 149772391 149772579 2.360000e-85 326
2 TraesCS5D01G225600 chr5D 78.599 257 33 11 1318 1571 287402078 287402315 1.520000e-32 150
3 TraesCS5D01G225600 chr5A 91.730 1572 69 15 712 2245 435475522 435477070 0.000000e+00 2126
4 TraesCS5D01G225600 chr5A 90.735 680 42 7 54 712 435471277 435471956 0.000000e+00 887
5 TraesCS5D01G225600 chr5A 95.337 193 9 0 2261 2453 670102753 670102561 8.540000e-80 307
6 TraesCS5D01G225600 chr5A 85.145 276 29 8 1000 1272 662064160 662063894 3.120000e-69 272
7 TraesCS5D01G225600 chr5B 92.308 1313 52 17 516 1811 390523449 390524729 0.000000e+00 1820
8 TraesCS5D01G225600 chr5B 92.079 1313 55 23 516 1811 390402584 390403864 0.000000e+00 1803
9 TraesCS5D01G225600 chr5B 86.990 515 57 7 2 510 390281359 390281869 2.740000e-159 571
10 TraesCS5D01G225600 chr5B 86.990 515 57 7 2 510 390415407 390415917 2.740000e-159 571
11 TraesCS5D01G225600 chr5B 85.897 156 14 4 1931 2078 390404016 390404171 2.530000e-35 159
12 TraesCS5D01G225600 chr5B 85.897 156 14 4 1931 2078 390524881 390525036 2.530000e-35 159
13 TraesCS5D01G225600 chrUn 97.539 447 6 3 762 1208 475903559 475903118 0.000000e+00 760
14 TraesCS5D01G225600 chrUn 97.297 185 4 1 2269 2452 51492678 51492862 1.840000e-81 313
15 TraesCS5D01G225600 chrUn 97.297 185 4 1 2269 2452 348959344 348959160 1.840000e-81 313
16 TraesCS5D01G225600 chr7D 96.907 194 5 1 2267 2459 605142916 605142723 8.480000e-85 324
17 TraesCS5D01G225600 chr6B 98.352 182 3 0 2270 2451 113707068 113707249 1.100000e-83 320
18 TraesCS5D01G225600 chr2B 97.826 184 4 0 2270 2453 458962292 458962475 3.950000e-83 318
19 TraesCS5D01G225600 chr2B 97.802 182 4 0 2270 2451 70184440 70184259 5.100000e-82 315
20 TraesCS5D01G225600 chr2B 80.934 257 43 5 1318 1571 772711400 772711147 5.360000e-47 198
21 TraesCS5D01G225600 chr1D 94.898 196 10 0 2260 2455 379922585 379922780 8.540000e-80 307
22 TraesCS5D01G225600 chr4B 85.870 276 30 5 1000 1272 609575075 609575344 4.000000e-73 285
23 TraesCS5D01G225600 chr4B 81.277 235 31 9 1097 1323 610244401 610244172 6.990000e-41 178
24 TraesCS5D01G225600 chr4D 84.058 276 32 7 1000 1272 481338663 481338929 3.140000e-64 255
25 TraesCS5D01G225600 chr7B 81.301 246 40 5 1318 1560 63582651 63582893 6.940000e-46 195
26 TraesCS5D01G225600 chr7B 84.058 138 19 3 1096 1230 720925588 720925451 1.980000e-26 130
27 TraesCS5D01G225600 chr4A 92.366 131 10 0 1095 1225 684061118 684060988 1.160000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G225600 chr5D 333977935 333980393 2458 False 4542.0 4542 100.0000 1 2459 1 chr5D.!!$F3 2458
1 TraesCS5D01G225600 chr5A 435471277 435477070 5793 False 1506.5 2126 91.2325 54 2245 2 chr5A.!!$F1 2191
2 TraesCS5D01G225600 chr5B 390523449 390525036 1587 False 989.5 1820 89.1025 516 2078 2 chr5B.!!$F4 1562
3 TraesCS5D01G225600 chr5B 390402584 390404171 1587 False 981.0 1803 88.9880 516 2078 2 chr5B.!!$F3 1562
4 TraesCS5D01G225600 chr5B 390281359 390281869 510 False 571.0 571 86.9900 2 510 1 chr5B.!!$F1 508
5 TraesCS5D01G225600 chr5B 390415407 390415917 510 False 571.0 571 86.9900 2 510 1 chr5B.!!$F2 508


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 230 0.606604 GAAGTCCCACGGTGAAGCTA 59.393 55.0 10.28 0.0 0.0 3.32 F
605 630 0.960364 TTCCAAGCCACATCGCCTTC 60.960 55.0 0.00 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 4989 2.406401 CGTCGCCGTACTCCGATT 59.594 61.111 7.77 0.0 39.56 3.34 R
2271 6004 0.185175 AGTCCCTGGAACCAAACACC 59.815 55.000 0.00 0.0 0.00 4.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 95 2.791927 CCAGATCTCGTGCGTCGA 59.208 61.111 0.00 3.96 46.83 4.20
98 103 4.409588 CGTGCGTCGAGTTTGGCG 62.410 66.667 0.00 0.00 42.86 5.69
140 145 4.025401 CGGCGAGTTTGGGTGCAC 62.025 66.667 8.80 8.80 0.00 4.57
141 146 2.904866 GGCGAGTTTGGGTGCACA 60.905 61.111 20.43 0.00 0.00 4.57
142 147 2.639286 GCGAGTTTGGGTGCACAG 59.361 61.111 20.43 0.18 0.00 3.66
223 230 0.606604 GAAGTCCCACGGTGAAGCTA 59.393 55.000 10.28 0.00 0.00 3.32
238 245 2.571757 CTACTCAGCGGTGCGGAA 59.428 61.111 10.38 0.00 31.77 4.30
355 362 3.660501 ACGAATGTGTTAGCAGAGACA 57.339 42.857 0.00 0.00 0.00 3.41
394 401 2.572290 GCAACAGGGTACATGGGATAC 58.428 52.381 0.00 0.00 0.00 2.24
421 428 7.148540 GGTTTGTTACGCTGTACAGATTAATCA 60.149 37.037 27.08 16.65 0.00 2.57
435 442 6.156256 ACAGATTAATCACTACCCTAGCAACA 59.844 38.462 17.56 0.00 0.00 3.33
448 455 4.818546 CCCTAGCAACAATACTGAGATTGG 59.181 45.833 10.31 0.00 40.50 3.16
455 462 6.203723 GCAACAATACTGAGATTGGGATCTAC 59.796 42.308 10.31 0.00 42.66 2.59
519 526 5.621781 CGACCCTAGAACCTTTTAGACTGTC 60.622 48.000 0.00 0.00 0.00 3.51
595 602 2.123683 TTGCCCGTTTCCAAGCCA 60.124 55.556 0.00 0.00 0.00 4.75
605 630 0.960364 TTCCAAGCCACATCGCCTTC 60.960 55.000 0.00 0.00 0.00 3.46
891 4483 4.103469 TGGCACGTGGGGTATATAATTTCT 59.897 41.667 18.88 0.00 0.00 2.52
971 4563 2.663602 CACAGAAGCATCACACGTAGTC 59.336 50.000 0.00 0.00 41.61 2.59
972 4564 2.296190 ACAGAAGCATCACACGTAGTCA 59.704 45.455 0.00 0.00 41.61 3.41
1046 4638 2.350514 GCAGGAGCTCAGCCTTGT 59.649 61.111 17.19 0.00 37.91 3.16
1324 4922 4.241555 CGGATGGGAAGGCGAGGG 62.242 72.222 0.00 0.00 0.00 4.30
1325 4923 3.878667 GGATGGGAAGGCGAGGGG 61.879 72.222 0.00 0.00 0.00 4.79
1405 5003 2.279252 CCCAATCGGAGTACGGCG 60.279 66.667 4.80 4.80 44.45 6.46
1502 5100 5.527582 ACTCGACAACTTTACTTGATTGCTT 59.472 36.000 0.00 0.00 0.00 3.91
1591 5192 7.397221 TCTTGTGTGTTGGATAAGATTGATCT 58.603 34.615 0.00 0.00 39.22 2.75
1592 5193 7.550551 TCTTGTGTGTTGGATAAGATTGATCTC 59.449 37.037 0.00 0.00 35.76 2.75
1593 5194 6.950842 TGTGTGTTGGATAAGATTGATCTCT 58.049 36.000 0.00 0.00 35.76 3.10
1640 5259 5.411669 GCCGATGGTATTATTCCTTAACCAG 59.588 44.000 0.00 0.00 43.11 4.00
1680 5300 2.396590 TTACCGGAGATTTGGTCTGC 57.603 50.000 9.46 0.00 41.50 4.26
1697 5317 4.767409 GGTCTGCCCTCTCTTGTTTAAATT 59.233 41.667 0.00 0.00 0.00 1.82
1901 5628 0.035056 CCAAGGGGTCAGCTTGGTAG 60.035 60.000 0.00 0.00 41.79 3.18
1902 5629 0.984230 CAAGGGGTCAGCTTGGTAGA 59.016 55.000 0.00 0.00 0.00 2.59
1963 5694 5.522824 ACTGTCTCTAAGTTCCAAAAACGTC 59.477 40.000 0.00 0.00 0.00 4.34
2090 5823 9.025041 AGGCAGTTTATAAGATTTTTGCTTAGT 57.975 29.630 0.00 0.00 31.94 2.24
2102 5835 4.974645 TTTGCTTAGTTCCAGGAGAGAA 57.025 40.909 0.00 0.00 0.00 2.87
2128 5861 7.519347 AAAGATAGGGGGTGTAGAATTACAA 57.481 36.000 0.00 0.00 41.25 2.41
2133 5866 3.010920 GGGGGTGTAGAATTACAAAGGGT 59.989 47.826 0.00 0.00 41.25 4.34
2155 5888 4.672251 GCATGGGCTCCAACATCT 57.328 55.556 0.00 0.00 36.95 2.90
2175 5908 5.718649 TCTTTTTGTGAGAGAGAAACGTG 57.281 39.130 0.00 0.00 0.00 4.49
2245 5978 5.690865 TCAGTGGGCTATTAATTAGGTTGG 58.309 41.667 0.00 0.00 0.00 3.77
2246 5979 4.278419 CAGTGGGCTATTAATTAGGTTGGC 59.722 45.833 0.00 0.00 0.00 4.52
2247 5980 4.168088 AGTGGGCTATTAATTAGGTTGGCT 59.832 41.667 0.00 0.00 0.00 4.75
2248 5981 4.278419 GTGGGCTATTAATTAGGTTGGCTG 59.722 45.833 0.00 0.00 0.00 4.85
2249 5982 4.079443 TGGGCTATTAATTAGGTTGGCTGT 60.079 41.667 0.00 0.00 0.00 4.40
2250 5983 5.132985 TGGGCTATTAATTAGGTTGGCTGTA 59.867 40.000 0.00 0.00 0.00 2.74
2251 5984 6.183361 TGGGCTATTAATTAGGTTGGCTGTAT 60.183 38.462 0.00 0.00 0.00 2.29
2252 5985 7.017750 TGGGCTATTAATTAGGTTGGCTGTATA 59.982 37.037 0.00 0.00 0.00 1.47
2253 5986 8.053355 GGGCTATTAATTAGGTTGGCTGTATAT 58.947 37.037 0.00 0.00 0.00 0.86
2254 5987 8.893727 GGCTATTAATTAGGTTGGCTGTATATG 58.106 37.037 0.00 0.00 0.00 1.78
2255 5988 9.667107 GCTATTAATTAGGTTGGCTGTATATGA 57.333 33.333 0.00 0.00 0.00 2.15
2259 5992 7.750229 AATTAGGTTGGCTGTATATGATGTG 57.250 36.000 0.00 0.00 0.00 3.21
2260 5993 4.090761 AGGTTGGCTGTATATGATGTGG 57.909 45.455 0.00 0.00 0.00 4.17
2261 5994 3.459598 AGGTTGGCTGTATATGATGTGGT 59.540 43.478 0.00 0.00 0.00 4.16
2262 5995 4.658435 AGGTTGGCTGTATATGATGTGGTA 59.342 41.667 0.00 0.00 0.00 3.25
2263 5996 5.131977 AGGTTGGCTGTATATGATGTGGTAA 59.868 40.000 0.00 0.00 0.00 2.85
2264 5997 5.238650 GGTTGGCTGTATATGATGTGGTAAC 59.761 44.000 0.00 0.00 0.00 2.50
2265 5998 5.887214 TGGCTGTATATGATGTGGTAACT 57.113 39.130 0.00 0.00 37.61 2.24
2266 5999 6.247229 TGGCTGTATATGATGTGGTAACTT 57.753 37.500 0.00 0.00 37.61 2.66
2267 6000 6.658849 TGGCTGTATATGATGTGGTAACTTT 58.341 36.000 0.00 0.00 37.61 2.66
2268 6001 7.797062 TGGCTGTATATGATGTGGTAACTTTA 58.203 34.615 0.00 0.00 37.61 1.85
2269 6002 7.931407 TGGCTGTATATGATGTGGTAACTTTAG 59.069 37.037 0.00 0.00 37.61 1.85
2270 6003 7.387948 GGCTGTATATGATGTGGTAACTTTAGG 59.612 40.741 0.00 0.00 37.61 2.69
2271 6004 7.387948 GCTGTATATGATGTGGTAACTTTAGGG 59.612 40.741 0.00 0.00 37.61 3.53
2272 6005 7.741785 TGTATATGATGTGGTAACTTTAGGGG 58.258 38.462 0.00 0.00 37.61 4.79
2273 6006 6.841781 ATATGATGTGGTAACTTTAGGGGT 57.158 37.500 0.00 0.00 37.61 4.95
2274 6007 4.295141 TGATGTGGTAACTTTAGGGGTG 57.705 45.455 0.00 0.00 37.61 4.61
2275 6008 3.653836 TGATGTGGTAACTTTAGGGGTGT 59.346 43.478 0.00 0.00 37.61 4.16
2276 6009 4.105057 TGATGTGGTAACTTTAGGGGTGTT 59.895 41.667 0.00 0.00 37.61 3.32
2277 6010 4.523168 TGTGGTAACTTTAGGGGTGTTT 57.477 40.909 0.00 0.00 37.61 2.83
2278 6011 4.208746 TGTGGTAACTTTAGGGGTGTTTG 58.791 43.478 0.00 0.00 37.61 2.93
2279 6012 3.570975 GTGGTAACTTTAGGGGTGTTTGG 59.429 47.826 0.00 0.00 37.61 3.28
2280 6013 3.204831 TGGTAACTTTAGGGGTGTTTGGT 59.795 43.478 0.00 0.00 37.61 3.67
2281 6014 4.217510 GGTAACTTTAGGGGTGTTTGGTT 58.782 43.478 0.00 0.00 0.00 3.67
2282 6015 4.279169 GGTAACTTTAGGGGTGTTTGGTTC 59.721 45.833 0.00 0.00 0.00 3.62
2283 6016 2.953453 ACTTTAGGGGTGTTTGGTTCC 58.047 47.619 0.00 0.00 0.00 3.62
2284 6017 2.245287 ACTTTAGGGGTGTTTGGTTCCA 59.755 45.455 0.00 0.00 0.00 3.53
2285 6018 2.668144 TTAGGGGTGTTTGGTTCCAG 57.332 50.000 0.00 0.00 0.00 3.86
2286 6019 0.774908 TAGGGGTGTTTGGTTCCAGG 59.225 55.000 0.00 0.00 0.00 4.45
2287 6020 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
2288 6021 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
2289 6022 0.826256 GGGTGTTTGGTTCCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
2290 6023 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
2291 6024 1.411074 GGTGTTTGGTTCCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
2292 6025 2.384828 GTGTTTGGTTCCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
2293 6026 2.764010 GTGTTTGGTTCCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
2294 6027 3.196901 GTGTTTGGTTCCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
2315 6048 6.844097 TTTTGTGTTGGGACTAGAAAAAGT 57.156 33.333 0.00 0.00 0.00 2.66
2316 6049 6.445357 TTTGTGTTGGGACTAGAAAAAGTC 57.555 37.500 0.00 0.00 44.31 3.01
2317 6050 5.367945 TGTGTTGGGACTAGAAAAAGTCT 57.632 39.130 0.00 0.00 44.42 3.24
2318 6051 5.365619 TGTGTTGGGACTAGAAAAAGTCTC 58.634 41.667 0.00 0.67 45.63 3.36
2319 6052 5.130477 TGTGTTGGGACTAGAAAAAGTCTCT 59.870 40.000 0.00 0.00 45.63 3.10
2320 6053 6.325545 TGTGTTGGGACTAGAAAAAGTCTCTA 59.674 38.462 0.00 0.00 45.63 2.43
2321 6054 6.869388 GTGTTGGGACTAGAAAAAGTCTCTAG 59.131 42.308 0.00 5.52 45.63 2.43
2333 6066 9.110502 AGAAAAAGTCTCTAGTAAACCAAACAG 57.889 33.333 0.00 0.00 0.00 3.16
2334 6067 7.803279 AAAAGTCTCTAGTAAACCAAACAGG 57.197 36.000 0.00 0.00 45.67 4.00
2335 6068 5.485209 AGTCTCTAGTAAACCAAACAGGG 57.515 43.478 0.00 0.00 43.89 4.45
2336 6069 4.906060 AGTCTCTAGTAAACCAAACAGGGT 59.094 41.667 0.00 0.00 45.04 4.34
2337 6070 4.995487 GTCTCTAGTAAACCAAACAGGGTG 59.005 45.833 0.00 0.00 41.32 4.61
2338 6071 4.041198 TCTCTAGTAAACCAAACAGGGTGG 59.959 45.833 0.00 0.00 41.32 4.61
2339 6072 2.375014 AGTAAACCAAACAGGGTGGG 57.625 50.000 0.00 0.00 41.32 4.61
2340 6073 1.854280 AGTAAACCAAACAGGGTGGGA 59.146 47.619 0.00 0.00 41.32 4.37
2341 6074 1.958579 GTAAACCAAACAGGGTGGGAC 59.041 52.381 0.00 0.00 41.32 4.46
2342 6075 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
2343 6076 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
2344 6077 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
2345 6078 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
2346 6079 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
2378 6111 9.170584 CTTTTTGCTAAAAGTACTTAGAAGCAC 57.829 33.333 26.54 9.63 43.34 4.40
2379 6112 6.796705 TTGCTAAAAGTACTTAGAAGCACC 57.203 37.500 26.54 8.77 31.59 5.01
2380 6113 6.110411 TGCTAAAAGTACTTAGAAGCACCT 57.890 37.500 24.48 1.17 31.59 4.00
2381 6114 6.164176 TGCTAAAAGTACTTAGAAGCACCTC 58.836 40.000 24.48 7.11 31.59 3.85
2382 6115 5.581479 GCTAAAAGTACTTAGAAGCACCTCC 59.419 44.000 22.32 2.48 31.59 4.30
2383 6116 5.827326 AAAAGTACTTAGAAGCACCTCCT 57.173 39.130 8.92 0.00 0.00 3.69
2384 6117 5.827326 AAAGTACTTAGAAGCACCTCCTT 57.173 39.130 8.92 0.00 0.00 3.36
2385 6118 4.810191 AGTACTTAGAAGCACCTCCTTG 57.190 45.455 0.00 0.00 0.00 3.61
2386 6119 4.417437 AGTACTTAGAAGCACCTCCTTGA 58.583 43.478 0.00 0.00 0.00 3.02
2387 6120 3.971245 ACTTAGAAGCACCTCCTTGAG 57.029 47.619 0.00 0.00 0.00 3.02
2388 6121 3.511477 ACTTAGAAGCACCTCCTTGAGA 58.489 45.455 0.00 0.00 0.00 3.27
2389 6122 3.513515 ACTTAGAAGCACCTCCTTGAGAG 59.486 47.826 0.00 0.00 42.83 3.20
2390 6123 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
2391 6124 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
2392 6125 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
2393 6126 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
2394 6127 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
2395 6128 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
2396 6129 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
2397 6130 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
2398 6131 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
2399 6132 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
2400 6133 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
2401 6134 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
2402 6135 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
2403 6136 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
2404 6137 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
2405 6138 7.762382 TCCTTGAGAGTCTTTTTCAAAAAGTC 58.238 34.615 19.82 15.25 31.11 3.01
2406 6139 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
2407 6140 7.148000 CCTTGAGAGTCTTTTTCAAAAAGTCCT 60.148 37.037 19.82 16.49 31.11 3.85
2408 6141 8.801882 TTGAGAGTCTTTTTCAAAAAGTCCTA 57.198 30.769 19.82 0.61 0.00 2.94
2409 6142 8.438676 TGAGAGTCTTTTTCAAAAAGTCCTAG 57.561 34.615 19.82 0.00 0.00 3.02
2410 6143 7.499232 TGAGAGTCTTTTTCAAAAAGTCCTAGG 59.501 37.037 19.82 0.82 0.00 3.02
2411 6144 6.773200 AGAGTCTTTTTCAAAAAGTCCTAGGG 59.227 38.462 19.82 0.00 0.00 3.53
2412 6145 6.669631 AGTCTTTTTCAAAAAGTCCTAGGGA 58.330 36.000 19.82 0.00 0.00 4.20
2444 6177 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
2445 6178 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
2446 6179 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
2447 6180 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
2448 6181 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
2449 6182 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
2450 6183 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
2451 6184 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
2452 6185 3.458487 ACTAGAGAACCAAACACCACCTT 59.542 43.478 0.00 0.00 0.00 3.50
2453 6186 3.382083 AGAGAACCAAACACCACCTTT 57.618 42.857 0.00 0.00 0.00 3.11
2454 6187 4.513406 AGAGAACCAAACACCACCTTTA 57.487 40.909 0.00 0.00 0.00 1.85
2455 6188 5.061721 AGAGAACCAAACACCACCTTTAT 57.938 39.130 0.00 0.00 0.00 1.40
2456 6189 6.195600 AGAGAACCAAACACCACCTTTATA 57.804 37.500 0.00 0.00 0.00 0.98
2457 6190 6.790319 AGAGAACCAAACACCACCTTTATAT 58.210 36.000 0.00 0.00 0.00 0.86
2458 6191 7.924541 AGAGAACCAAACACCACCTTTATATA 58.075 34.615 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 2.362736 GCTCATGACTCAAGCAATGGA 58.637 47.619 0.00 0.00 36.06 3.41
50 54 1.404391 GGCTCATGACTCAAGCAATGG 59.596 52.381 6.27 0.00 37.78 3.16
52 56 2.366533 CAGGCTCATGACTCAAGCAAT 58.633 47.619 6.27 0.00 37.78 3.56
55 59 1.375098 GGCAGGCTCATGACTCAAGC 61.375 60.000 0.00 0.00 35.27 4.01
90 95 3.055719 CCACCGATGCGCCAAACT 61.056 61.111 4.18 0.00 0.00 2.66
142 147 1.364626 CTTGACCCTGAGCGACATGC 61.365 60.000 0.00 0.00 46.98 4.06
193 199 3.050275 GGACTTCCTGGTGCGCAC 61.050 66.667 32.15 32.15 0.00 5.34
223 230 3.288308 CTCTTCCGCACCGCTGAGT 62.288 63.158 0.00 0.00 0.00 3.41
238 245 3.923864 TCGCGGCACCAACACTCT 61.924 61.111 6.13 0.00 0.00 3.24
278 285 2.290514 CCTCTCTCACATCCTTTTGGCA 60.291 50.000 0.00 0.00 40.12 4.92
331 338 3.673338 TCTCTGCTAACACATTCGTTTCG 59.327 43.478 0.00 0.00 0.00 3.46
342 349 1.202475 TGCAACGTGTCTCTGCTAACA 60.202 47.619 10.27 0.00 37.00 2.41
355 362 3.757745 GCCTGTATAAACATGCAACGT 57.242 42.857 0.00 0.00 44.10 3.99
394 401 2.396601 TCTGTACAGCGTAACAAACCG 58.603 47.619 18.45 0.00 0.00 4.44
421 428 5.269991 TCTCAGTATTGTTGCTAGGGTAGT 58.730 41.667 0.00 0.00 0.00 2.73
435 442 8.652290 GTTTAGGTAGATCCCAATCTCAGTATT 58.348 37.037 0.00 0.00 41.46 1.89
448 455 5.416271 TGACAGGTTGTTTAGGTAGATCC 57.584 43.478 0.00 0.00 0.00 3.36
455 462 3.190535 CCCGATTTGACAGGTTGTTTAGG 59.809 47.826 0.00 0.00 0.00 2.69
537 544 7.088905 GGGAATTGTAGTGTATCTGTATACGG 58.911 42.308 5.24 5.24 40.84 4.02
595 602 3.462021 GCAGAAGAATAGAAGGCGATGT 58.538 45.455 0.00 0.00 0.00 3.06
605 630 2.673368 GGTGGACAACGCAGAAGAATAG 59.327 50.000 0.00 0.00 0.00 1.73
680 705 3.383185 CGGCAGAGAGATTAGGAGACTTT 59.617 47.826 0.00 0.00 43.67 2.66
891 4483 3.445450 TGAAACTGTGGTGCTAAGCAAAA 59.555 39.130 0.00 0.00 41.47 2.44
971 4563 4.211374 GCACAGAAACCTACAGTAAGTGTG 59.789 45.833 0.00 0.00 40.69 3.82
972 4564 4.377897 GCACAGAAACCTACAGTAAGTGT 58.622 43.478 0.00 0.00 43.86 3.55
1046 4638 3.002583 TCATGCGGAGGGTGAGCA 61.003 61.111 0.00 0.00 45.46 4.26
1158 4756 2.587473 TGCTTGTGCGCGTTCTGA 60.587 55.556 8.43 0.00 43.34 3.27
1324 4922 2.815647 CTTGAGCGCCTCCGTTCC 60.816 66.667 2.29 0.00 43.00 3.62
1325 4923 2.815647 CCTTGAGCGCCTCCGTTC 60.816 66.667 2.29 0.00 43.79 3.95
1391 4989 2.406401 CGTCGCCGTACTCCGATT 59.594 61.111 7.77 0.00 39.56 3.34
1392 4990 3.580193 CCGTCGCCGTACTCCGAT 61.580 66.667 7.77 0.00 39.56 4.18
1502 5100 3.319405 ACATTGGCATACCGAAACAAACA 59.681 39.130 0.00 0.00 39.70 2.83
1591 5192 6.294787 CCACACTCAACTAGCTAAGAAGAAGA 60.295 42.308 0.00 0.00 0.00 2.87
1592 5193 5.866633 CCACACTCAACTAGCTAAGAAGAAG 59.133 44.000 0.00 0.00 0.00 2.85
1593 5194 5.784177 CCACACTCAACTAGCTAAGAAGAA 58.216 41.667 0.00 0.00 0.00 2.52
1640 5259 7.465513 CGGTAAATGTAAACTAGCATGTCTTCC 60.466 40.741 0.00 0.00 0.00 3.46
1652 5272 6.243148 ACCAAATCTCCGGTAAATGTAAACT 58.757 36.000 0.00 0.00 32.31 2.66
1697 5317 7.615582 AATCAATCAGCGAACTAGATCAAAA 57.384 32.000 0.00 0.00 0.00 2.44
1749 5369 4.098416 GCACGATTTGAATAACTTGAGGC 58.902 43.478 0.00 0.00 0.00 4.70
1816 5436 3.855379 CGTCCACTTAAATCGATCGTGAA 59.145 43.478 15.94 4.50 0.00 3.18
1819 5521 3.498927 ACGTCCACTTAAATCGATCGT 57.501 42.857 15.94 0.00 0.00 3.73
1931 5659 9.847224 TTTGGAACTTAGAGACAGTAGATTTTT 57.153 29.630 0.00 0.00 0.00 1.94
1943 5674 4.383173 GGGACGTTTTTGGAACTTAGAGA 58.617 43.478 0.00 0.00 0.00 3.10
1963 5694 4.021916 CCCTACCTCAGTATATTACCGGG 58.978 52.174 6.32 0.00 0.00 5.73
2102 5835 7.935405 TGTAATTCTACACCCCCTATCTTTTT 58.065 34.615 0.00 0.00 32.93 1.94
2107 5840 6.296803 CCTTTGTAATTCTACACCCCCTATC 58.703 44.000 0.00 0.00 37.77 2.08
2109 5842 4.475747 CCCTTTGTAATTCTACACCCCCTA 59.524 45.833 0.00 0.00 37.77 3.53
2110 5843 3.268595 CCCTTTGTAATTCTACACCCCCT 59.731 47.826 0.00 0.00 37.77 4.79
2111 5844 3.010920 ACCCTTTGTAATTCTACACCCCC 59.989 47.826 0.00 0.00 37.77 5.40
2128 5861 4.764143 GCCCATGCTACAACCCTT 57.236 55.556 0.00 0.00 33.53 3.95
2139 5872 3.007182 ACAAAAAGATGTTGGAGCCCATG 59.993 43.478 0.00 0.00 31.53 3.66
2155 5888 4.509616 TCCACGTTTCTCTCTCACAAAAA 58.490 39.130 0.00 0.00 0.00 1.94
2175 5908 4.083217 TGTTGTGCCATTAATACGTGTTCC 60.083 41.667 0.00 0.00 0.00 3.62
2218 5951 9.520515 CAACCTAATTAATAGCCCACTGATAAT 57.479 33.333 0.00 0.00 0.00 1.28
2219 5952 7.942341 CCAACCTAATTAATAGCCCACTGATAA 59.058 37.037 0.00 0.00 0.00 1.75
2223 5956 4.278419 GCCAACCTAATTAATAGCCCACTG 59.722 45.833 0.00 0.00 0.00 3.66
2228 5961 8.893727 CATATACAGCCAACCTAATTAATAGCC 58.106 37.037 0.00 0.00 0.00 3.93
2245 5978 7.387948 CCCTAAAGTTACCACATCATATACAGC 59.612 40.741 0.00 0.00 0.00 4.40
2246 5979 7.878127 CCCCTAAAGTTACCACATCATATACAG 59.122 40.741 0.00 0.00 0.00 2.74
2247 5980 7.348801 ACCCCTAAAGTTACCACATCATATACA 59.651 37.037 0.00 0.00 0.00 2.29
2248 5981 7.660208 CACCCCTAAAGTTACCACATCATATAC 59.340 40.741 0.00 0.00 0.00 1.47
2249 5982 7.348801 ACACCCCTAAAGTTACCACATCATATA 59.651 37.037 0.00 0.00 0.00 0.86
2250 5983 6.159751 ACACCCCTAAAGTTACCACATCATAT 59.840 38.462 0.00 0.00 0.00 1.78
2251 5984 5.489637 ACACCCCTAAAGTTACCACATCATA 59.510 40.000 0.00 0.00 0.00 2.15
2252 5985 4.291249 ACACCCCTAAAGTTACCACATCAT 59.709 41.667 0.00 0.00 0.00 2.45
2253 5986 3.653836 ACACCCCTAAAGTTACCACATCA 59.346 43.478 0.00 0.00 0.00 3.07
2254 5987 4.296621 ACACCCCTAAAGTTACCACATC 57.703 45.455 0.00 0.00 0.00 3.06
2255 5988 4.734843 AACACCCCTAAAGTTACCACAT 57.265 40.909 0.00 0.00 0.00 3.21
2256 5989 4.208746 CAAACACCCCTAAAGTTACCACA 58.791 43.478 0.00 0.00 0.00 4.17
2257 5990 3.570975 CCAAACACCCCTAAAGTTACCAC 59.429 47.826 0.00 0.00 0.00 4.16
2258 5991 3.204831 ACCAAACACCCCTAAAGTTACCA 59.795 43.478 0.00 0.00 0.00 3.25
2259 5992 3.836146 ACCAAACACCCCTAAAGTTACC 58.164 45.455 0.00 0.00 0.00 2.85
2260 5993 4.279169 GGAACCAAACACCCCTAAAGTTAC 59.721 45.833 0.00 0.00 0.00 2.50
2261 5994 4.079327 TGGAACCAAACACCCCTAAAGTTA 60.079 41.667 0.00 0.00 0.00 2.24
2262 5995 3.302161 GGAACCAAACACCCCTAAAGTT 58.698 45.455 0.00 0.00 0.00 2.66
2263 5996 2.245287 TGGAACCAAACACCCCTAAAGT 59.755 45.455 0.00 0.00 0.00 2.66
2264 5997 2.890945 CTGGAACCAAACACCCCTAAAG 59.109 50.000 0.00 0.00 0.00 1.85
2265 5998 2.425102 CCTGGAACCAAACACCCCTAAA 60.425 50.000 0.00 0.00 0.00 1.85
2266 5999 1.146152 CCTGGAACCAAACACCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
2267 6000 0.774908 CCTGGAACCAAACACCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
2268 6001 1.541672 CCTGGAACCAAACACCCCT 59.458 57.895 0.00 0.00 0.00 4.79
2269 6002 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
2270 6003 0.826256 GTCCCTGGAACCAAACACCC 60.826 60.000 0.00 0.00 0.00 4.61
2271 6004 0.185175 AGTCCCTGGAACCAAACACC 59.815 55.000 0.00 0.00 0.00 4.16
2272 6005 2.067365 AAGTCCCTGGAACCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
2273 6006 2.838637 AAAGTCCCTGGAACCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
2291 6024 7.177744 AGACTTTTTCTAGTCCCAACACAAAAA 59.822 33.333 0.00 0.00 44.50 1.94
2292 6025 6.661805 AGACTTTTTCTAGTCCCAACACAAAA 59.338 34.615 0.00 0.00 44.50 2.44
2293 6026 6.184789 AGACTTTTTCTAGTCCCAACACAAA 58.815 36.000 0.00 0.00 44.50 2.83
2294 6027 5.751586 AGACTTTTTCTAGTCCCAACACAA 58.248 37.500 0.00 0.00 44.50 3.33
2295 6028 5.130477 AGAGACTTTTTCTAGTCCCAACACA 59.870 40.000 0.00 0.00 44.50 3.72
2296 6029 5.612351 AGAGACTTTTTCTAGTCCCAACAC 58.388 41.667 0.00 0.00 44.50 3.32
2297 6030 5.888982 AGAGACTTTTTCTAGTCCCAACA 57.111 39.130 0.00 0.00 44.50 3.33
2307 6040 9.110502 CTGTTTGGTTTACTAGAGACTTTTTCT 57.889 33.333 0.00 0.00 37.23 2.52
2308 6041 8.343366 CCTGTTTGGTTTACTAGAGACTTTTTC 58.657 37.037 0.00 0.00 0.00 2.29
2309 6042 7.284716 CCCTGTTTGGTTTACTAGAGACTTTTT 59.715 37.037 0.00 0.00 0.00 1.94
2310 6043 6.771267 CCCTGTTTGGTTTACTAGAGACTTTT 59.229 38.462 0.00 0.00 0.00 2.27
2311 6044 6.126565 ACCCTGTTTGGTTTACTAGAGACTTT 60.127 38.462 0.00 0.00 33.91 2.66
2312 6045 5.368816 ACCCTGTTTGGTTTACTAGAGACTT 59.631 40.000 0.00 0.00 33.91 3.01
2313 6046 4.906060 ACCCTGTTTGGTTTACTAGAGACT 59.094 41.667 0.00 0.00 33.91 3.24
2314 6047 4.995487 CACCCTGTTTGGTTTACTAGAGAC 59.005 45.833 0.00 0.00 36.12 3.36
2315 6048 4.041198 CCACCCTGTTTGGTTTACTAGAGA 59.959 45.833 0.00 0.00 36.12 3.10
2316 6049 4.324267 CCACCCTGTTTGGTTTACTAGAG 58.676 47.826 0.00 0.00 36.12 2.43
2317 6050 3.073356 CCCACCCTGTTTGGTTTACTAGA 59.927 47.826 0.00 0.00 36.12 2.43
2318 6051 3.073356 TCCCACCCTGTTTGGTTTACTAG 59.927 47.826 0.00 0.00 36.12 2.57
2319 6052 3.054576 TCCCACCCTGTTTGGTTTACTA 58.945 45.455 0.00 0.00 36.12 1.82
2320 6053 1.854280 TCCCACCCTGTTTGGTTTACT 59.146 47.619 0.00 0.00 36.12 2.24
2321 6054 1.958579 GTCCCACCCTGTTTGGTTTAC 59.041 52.381 0.00 0.00 36.12 2.01
2322 6055 1.854280 AGTCCCACCCTGTTTGGTTTA 59.146 47.619 0.00 0.00 36.12 2.01
2323 6056 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
2324 6057 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
2325 6058 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
2326 6059 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
2353 6086 8.132995 GGTGCTTCTAAGTACTTTTAGCAAAAA 58.867 33.333 26.70 12.05 40.82 1.94
2354 6087 7.501225 AGGTGCTTCTAAGTACTTTTAGCAAAA 59.499 33.333 26.70 12.30 40.82 2.44
2355 6088 6.996282 AGGTGCTTCTAAGTACTTTTAGCAAA 59.004 34.615 26.70 12.78 40.82 3.68
2356 6089 6.531021 AGGTGCTTCTAAGTACTTTTAGCAA 58.469 36.000 26.70 15.79 40.82 3.91
2357 6090 6.110411 AGGTGCTTCTAAGTACTTTTAGCA 57.890 37.500 23.73 23.73 40.82 3.49
2358 6091 5.581479 GGAGGTGCTTCTAAGTACTTTTAGC 59.419 44.000 14.49 18.46 40.82 3.09
2359 6092 6.937392 AGGAGGTGCTTCTAAGTACTTTTAG 58.063 40.000 14.49 6.24 40.82 1.85
2360 6093 6.930068 AGGAGGTGCTTCTAAGTACTTTTA 57.070 37.500 14.49 0.00 40.82 1.52
2361 6094 5.827326 AGGAGGTGCTTCTAAGTACTTTT 57.173 39.130 14.49 0.00 40.82 2.27
2362 6095 5.307196 TCAAGGAGGTGCTTCTAAGTACTTT 59.693 40.000 14.49 0.00 40.82 2.66
2363 6096 4.838986 TCAAGGAGGTGCTTCTAAGTACTT 59.161 41.667 13.68 13.68 40.82 2.24
2364 6097 4.417437 TCAAGGAGGTGCTTCTAAGTACT 58.583 43.478 10.19 0.00 40.82 2.73
2365 6098 4.463186 TCTCAAGGAGGTGCTTCTAAGTAC 59.537 45.833 2.68 2.68 40.37 2.73
2366 6099 4.673968 TCTCAAGGAGGTGCTTCTAAGTA 58.326 43.478 0.00 0.00 0.00 2.24
2367 6100 3.511477 TCTCAAGGAGGTGCTTCTAAGT 58.489 45.455 0.00 0.00 0.00 2.24
2368 6101 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
2369 6102 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
2370 6103 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
2371 6104 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
2372 6105 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
2373 6106 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
2374 6107 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
2375 6108 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
2376 6109 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
2377 6110 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
2378 6111 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
2379 6112 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
2380 6113 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
2381 6114 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
2382 6115 7.766283 AGGACTTTTTGAAAAAGACTCTCAAG 58.234 34.615 30.55 7.82 31.11 3.02
2383 6116 7.703058 AGGACTTTTTGAAAAAGACTCTCAA 57.297 32.000 30.55 0.00 0.00 3.02
2384 6117 7.499232 CCTAGGACTTTTTGAAAAAGACTCTCA 59.501 37.037 30.55 14.91 0.00 3.27
2385 6118 7.041030 CCCTAGGACTTTTTGAAAAAGACTCTC 60.041 40.741 30.55 19.27 0.00 3.20
2386 6119 6.773200 CCCTAGGACTTTTTGAAAAAGACTCT 59.227 38.462 30.55 23.56 0.00 3.24
2387 6120 6.771267 TCCCTAGGACTTTTTGAAAAAGACTC 59.229 38.462 30.55 20.15 0.00 3.36
2388 6121 6.669631 TCCCTAGGACTTTTTGAAAAAGACT 58.330 36.000 30.55 26.69 0.00 3.24
2389 6122 6.954487 TCCCTAGGACTTTTTGAAAAAGAC 57.046 37.500 30.55 24.86 0.00 3.01
2422 6155 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
2423 6156 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
2424 6157 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
2425 6158 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
2426 6159 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
2427 6160 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
2428 6161 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
2429 6162 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
2430 6163 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
2431 6164 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
2432 6165 4.513406 AAAGGTGGTGTTTGGTTCTCTA 57.487 40.909 0.00 0.00 0.00 2.43
2433 6166 3.382083 AAAGGTGGTGTTTGGTTCTCT 57.618 42.857 0.00 0.00 0.00 3.10



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.