AutoCloner

Multiple sequence alignment - TraesCS5D01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G225200	chr5D	100.000	8882	0	0	1	8882	332786666	332777785	0.000000e+00	16403.0
1	TraesCS5D01G225200	chr5D	94.350	708	32	2	1851	2550	385444072	385443365	0.000000e+00	1079.0
2	TraesCS5D01G225200	chr5D	89.495	733	55	11	1844	2565	551893397	551894118	0.000000e+00	907.0
3	TraesCS5D01G225200	chr5D	91.988	649	37	7	1932	2568	407317267	407316622	0.000000e+00	896.0
4	TraesCS5D01G225200	chr5D	86.433	656	75	8	6207	6851	505371557	505372209	0.000000e+00	706.0
5	TraesCS5D01G225200	chr5D	88.000	525	43	10	2586	3106	335776422	335775914	3.550000e-168	603.0
6	TraesCS5D01G225200	chr5D	86.948	521	67	1	2586	3106	56906695	56906176	1.280000e-162	584.0
7	TraesCS5D01G225200	chr5D	95.804	286	9	1	2586	2868	559113938	559113653	8.130000e-125	459.0
8	TraesCS5D01G225200	chr5D	95.406	283	13	0	2586	2868	423273402	423273120	1.360000e-122	451.0
9	TraesCS5D01G225200	chr5D	93.289	298	13	2	2572	2868	84381747	84382038	4.930000e-117	433.0
10	TraesCS5D01G225200	chr5D	87.500	136	17	0	1851	1986	513528131	513527996	3.320000e-34	158.0
11	TraesCS5D01G225200	chr5B	93.160	1228	54	8	551	1756	388734822	388733603	0.000000e+00	1775.0
12	TraesCS5D01G225200	chr5B	87.618	1373	82	30	6859	8195	388729721	388728401	0.000000e+00	1513.0
13	TraesCS5D01G225200	chr5B	89.825	629	42	7	8254	8882	388728111	388727505	0.000000e+00	787.0
14	TraesCS5D01G225200	chr5B	91.797	512	39	2	5140	5648	388731279	388730768	0.000000e+00	710.0
15	TraesCS5D01G225200	chr5B	93.548	186	8	3	4349	4533	45810594	45810412	3.160000e-69	274.0
16	TraesCS5D01G225200	chr5B	85.354	198	22	7	3886	4080	551670629	551670436	1.960000e-46	198.0
17	TraesCS5D01G225200	chr5B	89.744	156	15	1	3469	3624	553923016	553923170	1.960000e-46	198.0
18	TraesCS5D01G225200	chr5B	90.132	152	12	3	3473	3623	513611401	513611252	2.530000e-45	195.0
19	TraesCS5D01G225200	chr5B	90.909	143	9	3	4229	4368	388733088	388732947	1.180000e-43	189.0
20	TraesCS5D01G225200	chr5B	90.598	117	6	3	4532	4648	388732945	388732834	5.550000e-32	150.0
21	TraesCS5D01G225200	chr5A	95.171	1139	29	11	551	1676	433787213	433786088	0.000000e+00	1775.0
22	TraesCS5D01G225200	chr5A	86.262	1696	122	47	4532	6195	433785218	433783602	0.000000e+00	1738.0
23	TraesCS5D01G225200	chr5A	89.722	1333	71	30	6859	8136	433783573	433782252	0.000000e+00	1642.0
24	TraesCS5D01G225200	chr5A	93.741	719	39	3	1851	2566	680715939	680715224	0.000000e+00	1074.0
25	TraesCS5D01G225200	chr5A	89.041	730	63	8	1851	2567	700171355	700172080	0.000000e+00	889.0
26	TraesCS5D01G225200	chr5A	89.899	495	42	6	8387	8881	433639805	433639319	1.630000e-176	630.0
27	TraesCS5D01G225200	chr5A	87.973	291	32	3	3784	4073	558694764	558695052	3.070000e-89	340.0
28	TraesCS5D01G225200	chr5A	88.325	197	15	5	4179	4370	433785411	433785218	6.940000e-56	230.0
29	TraesCS5D01G225200	chr7D	93.213	722	38	4	1852	2565	621228495	621229213	0.000000e+00	1051.0
30	TraesCS5D01G225200	chr7D	93.347	481	26	5	58	532	593424146	593423666	0.000000e+00	706.0
31	TraesCS5D01G225200	chr7D	92.708	480	29	6	58	532	618376090	618375612	0.000000e+00	688.0
32	TraesCS5D01G225200	chr7D	85.562	658	83	6	6207	6852	501466537	501467194	0.000000e+00	678.0
33	TraesCS5D01G225200	chr7D	89.464	541	49	4	1	534	254901297	254901836	0.000000e+00	676.0
34	TraesCS5D01G225200	chr7D	91.039	491	33	8	54	534	194788911	194788422	0.000000e+00	652.0
35	TraesCS5D01G225200	chr7D	88.578	429	17	13	2705	3103	29778672	29779098	8.010000e-135	492.0
36	TraesCS5D01G225200	chr7D	94.982	279	11	1	2590	2868	60590854	60590579	1.370000e-117	435.0
37	TraesCS5D01G225200	chr7D	93.197	294	18	2	2576	2868	78291114	78290822	1.770000e-116	431.0
38	TraesCS5D01G225200	chr7D	97.143	175	4	1	4359	4533	285785	285958	2.430000e-75	294.0
39	TraesCS5D01G225200	chr7D	95.283	106	5	0	1	106	561579861	561579756	1.530000e-37	169.0
40	TraesCS5D01G225200	chr7D	92.453	106	8	0	1	106	164630558	164630663	1.540000e-32	152.0
41	TraesCS5D01G225200	chr7D	80.909	110	18	3	8345	8452	447063612	447063720	5.710000e-12	84.2
42	TraesCS5D01G225200	chr7D	80.374	107	14	6	8352	8453	622602746	622602642	3.440000e-09	75.0
43	TraesCS5D01G225200	chr3D	90.483	725	50	9	1851	2568	336811515	336810803	0.000000e+00	939.0
44	TraesCS5D01G225200	chr3D	89.912	565	26	15	2572	3105	80219858	80220422	0.000000e+00	699.0
45	TraesCS5D01G225200	chr3D	90.399	552	23	14	2586	3107	602048431	602047880	0.000000e+00	699.0
46	TraesCS5D01G225200	chr3D	85.449	646	78	9	6210	6843	562514616	562513975	0.000000e+00	658.0
47	TraesCS5D01G225200	chr3D	91.060	481	37	5	58	532	129356146	129355666	0.000000e+00	645.0
48	TraesCS5D01G225200	chr3D	76.480	625	113	27	3473	4080	290935577	290934970	8.660000e-80	309.0
49	TraesCS5D01G225200	chr3D	98.795	166	1	1	4372	4537	613396235	613396399	2.430000e-75	294.0
50	TraesCS5D01G225200	chr3D	97.633	169	4	0	4372	4540	488387658	488387490	3.140000e-74	291.0
51	TraesCS5D01G225200	chr3D	96.552	174	6	0	4372	4545	435703450	435703277	1.130000e-73	289.0
52	TraesCS5D01G225200	chr3D	97.576	165	4	0	4369	4533	42739886	42740050	5.250000e-72	283.0
53	TraesCS5D01G225200	chr3D	97.561	164	4	0	4372	4535	495237655	495237818	1.890000e-71	281.0
54	TraesCS5D01G225200	chr7A	92.157	663	44	6	1851	2509	16765734	16766392	0.000000e+00	929.0
55	TraesCS5D01G225200	chr7A	86.094	640	52	21	3472	4080	47338297	47337664	0.000000e+00	654.0
56	TraesCS5D01G225200	chr7A	85.185	162	20	4	1851	2010	553042331	553042172	7.140000e-36	163.0
57	TraesCS5D01G225200	chr1B	89.843	699	50	12	1851	2532	684863822	684864516	0.000000e+00	878.0
58	TraesCS5D01G225200	chr1B	90.244	410	38	1	2586	2993	574272568	574272159	1.310000e-147	534.0
59	TraesCS5D01G225200	chr1B	85.990	207	16	7	3471	3677	323666122	323666315	9.040000e-50	209.0
60	TraesCS5D01G225200	chrUn	90.676	547	22	16	2586	3105	20485587	20486131	0.000000e+00	701.0
61	TraesCS5D01G225200	chrUn	88.929	551	25	5	2586	3106	364366338	364365794	0.000000e+00	647.0
62	TraesCS5D01G225200	chrUn	88.235	459	18	5	2586	3014	332493860	332494312	4.750000e-142	516.0
63	TraesCS5D01G225200	chrUn	86.966	445	25	14	2695	3106	1922709	1922265	3.750000e-128	470.0
64	TraesCS5D01G225200	chrUn	87.050	417	21	16	2723	3106	418864179	418863763	2.940000e-119	440.0
65	TraesCS5D01G225200	chrUn	95.113	266	9	3	2840	3101	93261928	93262193	4.960000e-112	416.0
66	TraesCS5D01G225200	chrUn	97.154	246	7	0	2856	3101	252510767	252510522	4.960000e-112	416.0
67	TraesCS5D01G225200	chrUn	91.986	287	17	3	2585	2868	150817739	150817456	1.800000e-106	398.0
68	TraesCS5D01G225200	chrUn	90.559	286	24	1	2586	2868	82489979	82489694	8.420000e-100	375.0
69	TraesCS5D01G225200	chrUn	92.885	253	18	0	2856	3108	82489671	82489419	1.410000e-97	368.0
70	TraesCS5D01G225200	chrUn	85.172	290	36	5	2586	2868	89858628	89858339	3.140000e-74	291.0
71	TraesCS5D01G225200	chrUn	86.250	240	30	3	2853	3092	34756696	34756932	3.180000e-64	257.0
72	TraesCS5D01G225200	chrUn	92.903	155	8	1	2714	2868	98078064	98078215	1.160000e-53	222.0
73	TraesCS5D01G225200	chrUn	86.243	189	23	1	2680	2868	221516087	221515902	1.510000e-47	202.0
74	TraesCS5D01G225200	chrUn	84.416	154	23	1	3473	3626	322883789	322883637	5.550000e-32	150.0
75	TraesCS5D01G225200	chrUn	97.531	81	2	0	2586	2666	455225689	455225769	1.200000e-28	139.0
76	TraesCS5D01G225200	chr1A	86.308	650	74	10	6205	6843	572681626	572682271	0.000000e+00	693.0
77	TraesCS5D01G225200	chr1A	93.471	291	11	5	2586	2868	536617165	536616875	8.240000e-115	425.0
78	TraesCS5D01G225200	chr1A	91.611	298	18	3	2572	2862	295227187	295227484	1.070000e-108	405.0
79	TraesCS5D01G225200	chr1A	91.815	281	22	1	2588	2868	150888884	150889163	3.010000e-104	390.0
80	TraesCS5D01G225200	chr1A	88.667	150	16	1	3473	3622	533218930	533219078	1.970000e-41	182.0
81	TraesCS5D01G225200	chr1A	85.802	162	17	5	1844	2000	540414840	540415000	5.520000e-37	167.0
82	TraesCS5D01G225200	chr1A	84.516	155	21	3	1851	2003	578333296	578333143	5.550000e-32	150.0
83	TraesCS5D01G225200	chr1A	87.179	117	15	0	1851	1967	216413709	216413825	5.590000e-27	134.0
84	TraesCS5D01G225200	chr1A	84.127	126	18	2	3944	4067	131276121	131275996	4.360000e-23	121.0
85	TraesCS5D01G225200	chr1A	87.037	108	11	3	3943	4048	202096043	202096149	1.570000e-22	119.0
86	TraesCS5D01G225200	chr1A	97.143	35	1	0	2555	2589	514134155	514134121	9.630000e-05	60.2
87	TraesCS5D01G225200	chr4D	90.406	542	28	13	2586	3103	439874544	439874003	0.000000e+00	691.0
88	TraesCS5D01G225200	chr4D	89.580	547	28	15	2588	3107	175189493	175188949	0.000000e+00	667.0
89	TraesCS5D01G225200	chr4D	85.404	644	83	5	6211	6843	417414954	417415597	0.000000e+00	658.0
90	TraesCS5D01G225200	chr4D	91.189	488	30	6	58	532	450365284	450365771	0.000000e+00	651.0
91	TraesCS5D01G225200	chr4D	90.852	481	37	6	58	532	10646641	10647120	9.730000e-179	638.0
92	TraesCS5D01G225200	chr4D	89.683	504	39	7	48	539	308811408	308811910	1.630000e-176	630.0
93	TraesCS5D01G225200	chr4D	82.143	616	84	17	3473	4065	150313790	150314402	1.030000e-138	505.0
94	TraesCS5D01G225200	chr4D	93.676	253	16	0	2853	3105	93439654	93439402	6.510000e-101	379.0
95	TraesCS5D01G225200	chr4D	88.125	160	15	4	3473	3631	381377474	381377318	4.230000e-43	187.0
96	TraesCS5D01G225200	chr2D	89.560	546	44	8	1	534	645263847	645264391	0.000000e+00	680.0
97	TraesCS5D01G225200	chr2D	86.348	564	39	15	1	532	121622767	121623324	1.660000e-161	580.0
98	TraesCS5D01G225200	chr2D	95.406	283	10	1	2586	2868	86518781	86518502	1.760000e-121	448.0
99	TraesCS5D01G225200	chr2D	95.406	283	10	1	2586	2868	486499200	486499479	1.760000e-121	448.0
100	TraesCS5D01G225200	chr2D	98.765	162	2	0	4372	4533	18206978	18207139	1.130000e-73	289.0
101	TraesCS5D01G225200	chr2D	98.182	165	3	0	4369	4533	313809716	313809880	1.130000e-73	289.0
102	TraesCS5D01G225200	chr2D	90.132	152	14	1	3473	3624	65538171	65538321	7.030000e-46	196.0
103	TraesCS5D01G225200	chr2D	89.677	155	14	2	3472	3626	242325837	242325685	7.030000e-46	196.0
104	TraesCS5D01G225200	chr2D	95.283	106	5	0	1	106	476358194	476358089	1.530000e-37	169.0
105	TraesCS5D01G225200	chr2D	74.373	359	58	20	8356	8699	454959808	454960147	1.210000e-23	122.0
106	TraesCS5D01G225200	chr6A	85.285	666	83	9	6197	6852	199805836	199806496	0.000000e+00	673.0
107	TraesCS5D01G225200	chr6A	85.312	640	82	6	6215	6843	54372805	54372167	0.000000e+00	651.0
108	TraesCS5D01G225200	chr6A	93.357	286	13	3	2586	2868	544168296	544168578	1.380000e-112	418.0
109	TraesCS5D01G225200	chr6A	86.429	140	14	5	3936	4073	199971137	199971273	2.000000e-31	148.0
110	TraesCS5D01G225200	chr6A	84.733	131	18	2	3944	4073	11519085	11519214	7.240000e-26	130.0
111	TraesCS5D01G225200	chr6A	97.222	36	1	0	2554	2589	93269275	93269310	2.680000e-05	62.1
112	TraesCS5D01G225200	chr6D	89.541	545	30	14	2586	3103	108455196	108455740	0.000000e+00	665.0
113	TraesCS5D01G225200	chr6D	88.475	564	28	17	2577	3106	451667783	451668343	0.000000e+00	647.0
114	TraesCS5D01G225200	chr6D	94.057	387	22	1	3679	4064	184785999	184786385	3.570000e-163	586.0
115	TraesCS5D01G225200	chr6D	93.357	286	15	3	2586	2868	99233124	99233408	3.830000e-113	420.0
116	TraesCS5D01G225200	chr6D	90.106	283	22	2	2586	2868	473051366	473051090	6.550000e-96	363.0
117	TraesCS5D01G225200	chr6D	90.058	171	11	3	3473	3638	302052387	302052556	5.400000e-52	217.0
118	TraesCS5D01G225200	chr6D	85.507	207	24	6	3876	4080	435066335	435066133	2.510000e-50	211.0
119	TraesCS5D01G225200	chr6D	84.868	152	22	1	3473	3624	222772796	222772646	1.540000e-32	152.0
120	TraesCS5D01G225200	chr6D	87.059	85	3	7	3999	4080	119143771	119143692	1.230000e-13	89.8
121	TraesCS5D01G225200	chr4A	85.123	652	84	10	6208	6848	601315204	601315853	0.000000e+00	654.0
122	TraesCS5D01G225200	chr4A	90.132	152	14	1	3473	3624	704788379	704788229	7.030000e-46	196.0
123	TraesCS5D01G225200	chr4A	83.732	209	28	6	3869	4073	718501262	718501468	9.100000e-45	193.0
124	TraesCS5D01G225200	chr2A	85.248	644	81	8	6211	6843	66767194	66767834	0.000000e+00	651.0
125	TraesCS5D01G225200	chr2A	84.906	212	24	7	3467	3677	752780204	752780000	3.250000e-49	207.0
126	TraesCS5D01G225200	chr2A	93.396	106	7	0	1	106	748903134	748903239	3.320000e-34	158.0
127	TraesCS5D01G225200	chr1D	88.065	553	31	15	2586	3105	470207368	470206818	2.720000e-174	623.0
128	TraesCS5D01G225200	chr1D	87.645	518	31	15	2619	3103	395349737	395350254	1.000000e-158	571.0
129	TraesCS5D01G225200	chr1D	90.773	401	28	4	3680	4073	392630565	392630963	2.200000e-145	527.0
130	TraesCS5D01G225200	chr1D	93.640	283	9	1	2586	2868	66765702	66765429	1.780000e-111	414.0
131	TraesCS5D01G225200	chr1D	76.923	624	108	29	3475	4080	289515058	289514453	1.110000e-83	322.0
132	TraesCS5D01G225200	chr1D	90.952	210	14	2	3473	3677	392630322	392630531	2.440000e-70	278.0
133	TraesCS5D01G225200	chr1D	87.273	165	15	6	3918	4080	289564665	289564505	5.480000e-42	183.0
134	TraesCS5D01G225200	chr1D	86.792	159	18	3	3467	3623	314087979	314087822	3.300000e-39	174.0
135	TraesCS5D01G225200	chr1D	86.466	133	14	4	3943	4073	314087062	314086932	9.300000e-30	143.0
136	TraesCS5D01G225200	chr1D	87.037	108	11	3	3943	4048	148683039	148683145	1.570000e-22	119.0
137	TraesCS5D01G225200	chr1D	91.667	72	5	1	3999	4069	468869327	468869256	2.040000e-16	99.0
138	TraesCS5D01G225200	chr6B	86.871	556	66	6	2551	3103	234844123	234844674	4.560000e-172	616.0
139	TraesCS5D01G225200	chr6B	82.040	451	61	11	2670	3107	534232240	534231797	5.070000e-97	366.0
140	TraesCS5D01G225200	chr6B	85.859	198	21	7	3886	4080	52389495	52389302	4.200000e-48	204.0
141	TraesCS5D01G225200	chr2B	85.778	450	31	12	7361	7798	1535813	1535385	6.330000e-121	446.0
142	TraesCS5D01G225200	chr2B	86.364	154	19	1	1851	2002	202909587	202909434	5.520000e-37	167.0
143	TraesCS5D01G225200	chr4B	93.640	283	15	1	2586	2868	62976998	62977277	3.830000e-113	420.0
144	TraesCS5D01G225200	chr4B	90.196	153	12	3	3472	3623	299562185	299562335	7.030000e-46	196.0
145	TraesCS5D01G225200	chr4B	81.325	166	23	7	1851	2010	602699158	602699321	2.600000e-25	128.0
146	TraesCS5D01G225200	chr4B	78.571	154	32	1	1851	2003	455007336	455007489	5.670000e-17	100.0
147	TraesCS5D01G225200	chr7B	93.594	281	15	1	2588	2868	458856233	458856510	4.960000e-112	416.0
148	TraesCS5D01G225200	chr7B	84.651	215	26	7	3869	4080	331176087	331175877	3.250000e-49	207.0
149	TraesCS5D01G225200	chr7B	88.199	161	15	4	3473	3632	138875475	138875632	1.180000e-43	189.0
150	TraesCS5D01G225200	chr7B	82.741	197	29	5	3880	4073	602112792	602112986	4.260000e-38	171.0
151	TraesCS5D01G225200	chr3B	91.503	153	12	1	3472	3624	722354853	722354702	9.040000e-50	209.0
152	TraesCS5D01G225200	chr3A	87.097	155	17	2	1851	2003	572550063	572550216	1.190000e-38	172.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G225200	chr5D	332777785	332786666	8881	True	16403.00	16403	100.000000	1	8882	1	chr5D.!!$R2	8881
1	TraesCS5D01G225200	chr5D	385443365	385444072	707	True	1079.00	1079	94.350000	1851	2550	1	chr5D.!!$R4	699
2	TraesCS5D01G225200	chr5D	551893397	551894118	721	False	907.00	907	89.495000	1844	2565	1	chr5D.!!$F3	721
3	TraesCS5D01G225200	chr5D	407316622	407317267	645	True	896.00	896	91.988000	1932	2568	1	chr5D.!!$R5	636
4	TraesCS5D01G225200	chr5D	505371557	505372209	652	False	706.00	706	86.433000	6207	6851	1	chr5D.!!$F2	644
5	TraesCS5D01G225200	chr5D	335775914	335776422	508	True	603.00	603	88.000000	2586	3106	1	chr5D.!!$R3	520
6	TraesCS5D01G225200	chr5D	56906176	56906695	519	True	584.00	584	86.948000	2586	3106	1	chr5D.!!$R1	520
7	TraesCS5D01G225200	chr5B	388727505	388734822	7317	True	854.00	1775	90.651167	551	8882	6	chr5B.!!$R4	8331
8	TraesCS5D01G225200	chr5A	433782252	433787213	4961	True	1346.25	1775	89.870000	551	8136	4	chr5A.!!$R3	7585
9	TraesCS5D01G225200	chr5A	680715224	680715939	715	True	1074.00	1074	93.741000	1851	2566	1	chr5A.!!$R2	715
10	TraesCS5D01G225200	chr5A	700171355	700172080	725	False	889.00	889	89.041000	1851	2567	1	chr5A.!!$F2	716
11	TraesCS5D01G225200	chr7D	621228495	621229213	718	False	1051.00	1051	93.213000	1852	2565	1	chr7D.!!$F7	713
12	TraesCS5D01G225200	chr7D	501466537	501467194	657	False	678.00	678	85.562000	6207	6852	1	chr7D.!!$F6	645
13	TraesCS5D01G225200	chr7D	254901297	254901836	539	False	676.00	676	89.464000	1	534	1	chr7D.!!$F4	533
14	TraesCS5D01G225200	chr3D	336810803	336811515	712	True	939.00	939	90.483000	1851	2568	1	chr3D.!!$R3	717
15	TraesCS5D01G225200	chr3D	80219858	80220422	564	False	699.00	699	89.912000	2572	3105	1	chr3D.!!$F2	533
16	TraesCS5D01G225200	chr3D	602047880	602048431	551	True	699.00	699	90.399000	2586	3107	1	chr3D.!!$R7	521
17	TraesCS5D01G225200	chr3D	562513975	562514616	641	True	658.00	658	85.449000	6210	6843	1	chr3D.!!$R6	633
18	TraesCS5D01G225200	chr3D	290934970	290935577	607	True	309.00	309	76.480000	3473	4080	1	chr3D.!!$R2	607
19	TraesCS5D01G225200	chr7A	16765734	16766392	658	False	929.00	929	92.157000	1851	2509	1	chr7A.!!$F1	658
20	TraesCS5D01G225200	chr7A	47337664	47338297	633	True	654.00	654	86.094000	3472	4080	1	chr7A.!!$R1	608
21	TraesCS5D01G225200	chr1B	684863822	684864516	694	False	878.00	878	89.843000	1851	2532	1	chr1B.!!$F2	681
22	TraesCS5D01G225200	chrUn	20485587	20486131	544	False	701.00	701	90.676000	2586	3105	1	chrUn.!!$F1	519
23	TraesCS5D01G225200	chrUn	364365794	364366338	544	True	647.00	647	88.929000	2586	3106	1	chrUn.!!$R7	520
24	TraesCS5D01G225200	chrUn	82489419	82489979	560	True	371.50	375	91.722000	2586	3108	2	chrUn.!!$R9	522
25	TraesCS5D01G225200	chr1A	572681626	572682271	645	False	693.00	693	86.308000	6205	6843	1	chr1A.!!$F7	638
26	TraesCS5D01G225200	chr4D	439874003	439874544	541	True	691.00	691	90.406000	2586	3103	1	chr4D.!!$R4	517
27	TraesCS5D01G225200	chr4D	175188949	175189493	544	True	667.00	667	89.580000	2588	3107	1	chr4D.!!$R2	519
28	TraesCS5D01G225200	chr4D	417414954	417415597	643	False	658.00	658	85.404000	6211	6843	1	chr4D.!!$F4	632
29	TraesCS5D01G225200	chr4D	308811408	308811910	502	False	630.00	630	89.683000	48	539	1	chr4D.!!$F3	491
30	TraesCS5D01G225200	chr4D	150313790	150314402	612	False	505.00	505	82.143000	3473	4065	1	chr4D.!!$F2	592
31	TraesCS5D01G225200	chr2D	645263847	645264391	544	False	680.00	680	89.560000	1	534	1	chr2D.!!$F7	533
32	TraesCS5D01G225200	chr2D	121622767	121623324	557	False	580.00	580	86.348000	1	532	1	chr2D.!!$F3	531
33	TraesCS5D01G225200	chr6A	199805836	199806496	660	False	673.00	673	85.285000	6197	6852	1	chr6A.!!$F3	655
34	TraesCS5D01G225200	chr6A	54372167	54372805	638	True	651.00	651	85.312000	6215	6843	1	chr6A.!!$R1	628
35	TraesCS5D01G225200	chr6D	108455196	108455740	544	False	665.00	665	89.541000	2586	3103	1	chr6D.!!$F2	517
36	TraesCS5D01G225200	chr6D	451667783	451668343	560	False	647.00	647	88.475000	2577	3106	1	chr6D.!!$F5	529
37	TraesCS5D01G225200	chr4A	601315204	601315853	649	False	654.00	654	85.123000	6208	6848	1	chr4A.!!$F1	640
38	TraesCS5D01G225200	chr2A	66767194	66767834	640	False	651.00	651	85.248000	6211	6843	1	chr2A.!!$F1	632
39	TraesCS5D01G225200	chr1D	470206818	470207368	550	True	623.00	623	88.065000	2586	3105	1	chr1D.!!$R5	519
40	TraesCS5D01G225200	chr1D	395349737	395350254	517	False	571.00	571	87.645000	2619	3103	1	chr1D.!!$F2	484
41	TraesCS5D01G225200	chr1D	392630322	392630963	641	False	402.50	527	90.862500	3473	4073	2	chr1D.!!$F3	600
42	TraesCS5D01G225200	chr1D	289514453	289515058	605	True	322.00	322	76.923000	3475	4080	1	chr1D.!!$R2	605
43	TraesCS5D01G225200	chr6B	234844123	234844674	551	False	616.00	616	86.871000	2551	3103	1	chr6B.!!$F1	552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
511	561	0.320771	GCTTGCGGAGGTCTTTCTGA	60.321	55.0	0.00	0.00	0.00	3.27	F
1683	1797	0.109342	ACTTGCCAAGTAGCAGCAGT	59.891	50.0	8.67	0.00	45.13	4.40	F
1925	2088	0.030369	ATCGCTTAGTTAGACGCGGG	59.970	55.0	12.47	0.00	45.11	6.13	F
3385	3712	0.175073	GTAGGGGTTGAGCTGTACCG	59.825	60.0	0.00	0.00	35.19	4.02	F
4364	4799	0.179084	TGCACGTAGAGCCCATAAGC	60.179	55.0	0.00	0.00	45.43	3.09	F
4855	5646	0.037590	TGGTCAACAGGCCGCTTAAT	59.962	50.0	0.00	0.00	0.00	1.40	F
5324	6911	0.464373	CCATGAAGATCCACACCCCG	60.464	60.0	0.00	0.00	0.00	5.73	F
5710	7521	0.681175	ACCCGTGGTACTTTTAGCGT	59.319	50.0	0.00	0.00	32.11	5.07	F
7556	9736	0.799152	TACCGTTCGTGCTACGCATG	60.799	55.0	1.75	1.75	45.79	4.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1794	1957	0.391130	GCCATGCACACCGAGAGTAA	60.391	55.000	0.00	0.00	0.00	2.24	R
3401	3728	0.179084	GATCATTCGGAGCCGTCCAA	60.179	55.000	8.96	0.00	44.18	3.53	R
3790	4172	1.079127	GAGGCTGGTTGCTTCGCTA	60.079	57.895	0.00	0.00	38.01	4.26	R
4367	4802	0.686769	TTAGGAACGGAGGGAGGAGC	60.687	60.000	0.00	0.00	0.00	4.70	R
6352	8480	0.035439	GAGGGAAAGGCAATGACGGA	60.035	55.000	0.00	0.00	0.00	4.69	R
6706	8845	1.873591	ACGTGATGGCTCTGTTTTCAC	59.126	47.619	0.00	0.00	34.70	3.18	R
7278	9423	0.549469	ATGAGCTGGATGCATGGACA	59.451	50.000	2.46	0.00	45.94	4.02	R
7610	9791	1.401761	TCCCCACATTGTGCATATGC	58.598	50.000	21.09	21.09	42.50	3.14	R
8790	11252	0.102300	GAGGAGAAAGAGCTCGGAGC	59.898	60.000	22.13	22.13	42.84	4.70	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	45	1.627297	GCCTCATCTCCGGGGAAACT	61.627	60.000	8.88	0.00	0.00	2.66
56	63	1.515954	GGAAACTCTCGGCCATCGA	59.484	57.895	2.24	0.00	46.77	3.59
357	401	2.548057	CTCTTTCGTGCCAAAACTGCTA	59.452	45.455	0.00	0.00	0.00	3.49
359	403	2.248280	TTCGTGCCAAAACTGCTAGA	57.752	45.000	0.00	0.00	0.00	2.43
428	474	2.125147	CGCTGATTTCGGCCCAGA	60.125	61.111	9.85	0.00	45.16	3.86
432	479	2.267961	GATTTCGGCCCAGACGGT	59.732	61.111	0.00	0.00	33.33	4.83
503	551	2.641197	AAAAATCGCTTGCGGAGGT	58.359	47.368	15.10	0.00	0.00	3.85
511	561	0.320771	GCTTGCGGAGGTCTTTCTGA	60.321	55.000	0.00	0.00	0.00	3.27
535	585	0.461548	CGGCTGGAGATGCTCTTACA	59.538	55.000	0.00	0.00	0.00	2.41
537	587	1.202627	GGCTGGAGATGCTCTTACAGG	60.203	57.143	14.45	0.00	34.46	4.00
538	588	1.484240	GCTGGAGATGCTCTTACAGGT	59.516	52.381	14.45	0.00	34.46	4.00
539	589	2.482839	GCTGGAGATGCTCTTACAGGTC	60.483	54.545	14.45	0.00	34.46	3.85
540	590	2.762887	CTGGAGATGCTCTTACAGGTCA	59.237	50.000	0.00	0.00	32.02	4.02
541	591	3.173151	TGGAGATGCTCTTACAGGTCAA	58.827	45.455	0.00	0.00	0.00	3.18
542	592	3.055819	TGGAGATGCTCTTACAGGTCAAC	60.056	47.826	0.00	0.00	0.00	3.18
543	593	3.055819	GGAGATGCTCTTACAGGTCAACA	60.056	47.826	0.00	0.00	0.00	3.33
544	594	4.383552	GGAGATGCTCTTACAGGTCAACAT	60.384	45.833	0.00	0.00	0.00	2.71
545	595	4.764172	AGATGCTCTTACAGGTCAACATC	58.236	43.478	0.00	0.00	34.32	3.06
546	596	2.959516	TGCTCTTACAGGTCAACATCG	58.040	47.619	0.00	0.00	0.00	3.84
547	597	2.271800	GCTCTTACAGGTCAACATCGG	58.728	52.381	0.00	0.00	0.00	4.18
548	598	2.094182	GCTCTTACAGGTCAACATCGGA	60.094	50.000	0.00	0.00	0.00	4.55
549	599	3.616560	GCTCTTACAGGTCAACATCGGAA	60.617	47.826	0.00	0.00	0.00	4.30
566	616	2.423538	CGGAAATGCCCTAACTTTGAGG	59.576	50.000	0.00	0.00	0.00	3.86
571	621	6.831868	GGAAATGCCCTAACTTTGAGGTATAA	59.168	38.462	0.00	0.00	31.52	0.98
574	624	8.838649	AATGCCCTAACTTTGAGGTATAATTT	57.161	30.769	0.00	0.00	31.52	1.82
588	638	6.837312	AGGTATAATTTCATCCACCGATCAA	58.163	36.000	0.00	0.00	0.00	2.57
676	726	0.391661	ACTGACGGCTGCCATTGTAG	60.392	55.000	20.29	11.09	0.00	2.74
723	773	6.663093	AGAGGAGCTGTATCCATTACATAGAG	59.337	42.308	0.00	0.00	42.26	2.43
755	813	1.676635	CGTAGAGGACCCGTGACCA	60.677	63.158	0.00	0.00	0.00	4.02
766	824	3.373226	GTGACCACGGCCTGTCTA	58.627	61.111	15.29	3.05	32.67	2.59
767	825	1.215647	GTGACCACGGCCTGTCTAG	59.784	63.158	15.29	3.88	32.67	2.43
803	876	1.447838	CAGATGCCCAGCGTTACGT	60.448	57.895	6.63	0.00	0.00	3.57
1045	1118	4.154347	CACGGGAGGAGGAGCAGC	62.154	72.222	0.00	0.00	0.00	5.25
1077	1150	2.280186	GTGATCATCGTCGGGGCC	60.280	66.667	0.00	0.00	0.00	5.80
1216	1289	3.241530	TCCACCTCGCCAAGCAGT	61.242	61.111	0.00	0.00	0.00	4.40
1306	1379	1.142185	CTACCTCGACGACTACGCGA	61.142	60.000	15.93	0.00	43.96	5.87
1560	1633	1.659035	GCAAGGGGATGGAGGGGAAT	61.659	60.000	0.00	0.00	0.00	3.01
1673	1746	2.069273	CGAGGTCAGTTACTTGCCAAG	58.931	52.381	2.11	2.11	0.00	3.61
1677	1791	2.742589	GGTCAGTTACTTGCCAAGTAGC	59.257	50.000	20.01	20.01	44.22	3.58
1680	1794	2.160417	CAGTTACTTGCCAAGTAGCAGC	59.840	50.000	26.50	14.74	44.62	5.25
1683	1797	0.109342	ACTTGCCAAGTAGCAGCAGT	59.891	50.000	8.67	0.00	45.13	4.40
1692	1806	5.673818	GCCAAGTAGCAGCAGTATGTTTAAC	60.674	44.000	0.00	0.00	39.31	2.01
1709	1823	8.975410	ATGTTTAACGTTTCTTAATTAAGGGC	57.025	30.769	22.11	12.72	34.14	5.19
1714	1828	3.759618	CGTTTCTTAATTAAGGGCCCACA	59.240	43.478	27.56	8.15	34.14	4.17
1717	1831	3.963129	TCTTAATTAAGGGCCCACAGTG	58.037	45.455	27.56	6.11	34.14	3.66
1752	1915	9.344772	TGCTTTTAATGTTTCTTACTCAAGGTA	57.655	29.630	0.00	0.00	32.22	3.08
1758	1921	5.616270	TGTTTCTTACTCAAGGTATGTGCA	58.384	37.500	0.00	0.00	32.22	4.57
1761	1924	4.820897	TCTTACTCAAGGTATGTGCAGTG	58.179	43.478	0.00	0.00	32.22	3.66
1762	1925	4.283467	TCTTACTCAAGGTATGTGCAGTGT	59.717	41.667	0.00	0.00	32.22	3.55
1764	1927	3.820557	ACTCAAGGTATGTGCAGTGTTT	58.179	40.909	0.00	0.00	0.00	2.83
1765	1928	3.815401	ACTCAAGGTATGTGCAGTGTTTC	59.185	43.478	0.00	0.00	0.00	2.78
1766	1929	4.067896	CTCAAGGTATGTGCAGTGTTTCT	58.932	43.478	0.00	0.00	0.00	2.52
1767	1930	4.460263	TCAAGGTATGTGCAGTGTTTCTT	58.540	39.130	0.00	0.00	0.00	2.52
1768	1931	5.616270	TCAAGGTATGTGCAGTGTTTCTTA	58.384	37.500	0.00	0.00	0.00	2.10
1769	1932	5.468746	TCAAGGTATGTGCAGTGTTTCTTAC	59.531	40.000	0.00	0.00	0.00	2.34
1770	1933	5.228945	AGGTATGTGCAGTGTTTCTTACT	57.771	39.130	0.00	0.00	0.00	2.24
1771	1934	5.621193	AGGTATGTGCAGTGTTTCTTACTT	58.379	37.500	0.00	0.00	0.00	2.24
1772	1935	6.765403	AGGTATGTGCAGTGTTTCTTACTTA	58.235	36.000	0.00	0.00	0.00	2.24
1773	1936	7.394816	AGGTATGTGCAGTGTTTCTTACTTAT	58.605	34.615	0.00	0.00	0.00	1.73
1774	1937	8.537016	AGGTATGTGCAGTGTTTCTTACTTATA	58.463	33.333	0.00	0.00	0.00	0.98
1775	1938	8.818057	GGTATGTGCAGTGTTTCTTACTTATAG	58.182	37.037	0.00	0.00	0.00	1.31
1776	1939	9.367444	GTATGTGCAGTGTTTCTTACTTATAGT	57.633	33.333	0.00	0.00	0.00	2.12
1778	1941	8.981724	TGTGCAGTGTTTCTTACTTATAGTAG	57.018	34.615	0.00	0.00	31.47	2.57
1779	1942	8.582437	TGTGCAGTGTTTCTTACTTATAGTAGT	58.418	33.333	0.00	0.00	31.47	2.73
1802	1965	8.635877	AGTATGCTTAATGTTTCTTACTCTCG	57.364	34.615	0.00	0.00	0.00	4.04
1803	1966	6.910536	ATGCTTAATGTTTCTTACTCTCGG	57.089	37.500	0.00	0.00	0.00	4.63
1804	1967	5.790593	TGCTTAATGTTTCTTACTCTCGGT	58.209	37.500	0.00	0.00	0.00	4.69
1805	1968	5.637810	TGCTTAATGTTTCTTACTCTCGGTG	59.362	40.000	0.00	0.00	0.00	4.94
1806	1969	5.638234	GCTTAATGTTTCTTACTCTCGGTGT	59.362	40.000	0.00	0.00	0.00	4.16
1807	1970	6.401153	GCTTAATGTTTCTTACTCTCGGTGTG	60.401	42.308	0.00	0.00	0.00	3.82
1808	1971	2.750948	TGTTTCTTACTCTCGGTGTGC	58.249	47.619	0.00	0.00	0.00	4.57
1809	1972	2.101750	TGTTTCTTACTCTCGGTGTGCA	59.898	45.455	0.00	0.00	0.00	4.57
1810	1973	3.244078	TGTTTCTTACTCTCGGTGTGCAT	60.244	43.478	0.00	0.00	0.00	3.96
1811	1974	2.654749	TCTTACTCTCGGTGTGCATG	57.345	50.000	0.00	0.00	0.00	4.06
1812	1975	1.204704	TCTTACTCTCGGTGTGCATGG	59.795	52.381	0.00	0.00	0.00	3.66
1813	1976	0.391130	TTACTCTCGGTGTGCATGGC	60.391	55.000	0.00	0.00	0.00	4.40
1814	1977	1.257750	TACTCTCGGTGTGCATGGCT	61.258	55.000	0.00	0.00	0.00	4.75
1815	1978	2.046988	TCTCGGTGTGCATGGCTG	60.047	61.111	0.00	0.00	0.00	4.85
1824	1987	4.865761	GCATGGCTGCATGCGTGG	62.866	66.667	14.09	6.98	46.69	4.94
1825	1988	3.445687	CATGGCTGCATGCGTGGT	61.446	61.111	14.09	0.00	44.05	4.16
1826	1989	2.677524	ATGGCTGCATGCGTGGTT	60.678	55.556	14.09	0.00	44.05	3.67
1827	1990	2.703798	ATGGCTGCATGCGTGGTTC	61.704	57.895	14.09	0.00	44.05	3.62
1828	1991	4.465512	GGCTGCATGCGTGGTTCG	62.466	66.667	14.09	0.00	44.05	3.95
1837	2000	4.248402	CGTGGTTCGCTCCGTTTA	57.752	55.556	0.00	0.00	0.00	2.01
1838	2001	2.745728	CGTGGTTCGCTCCGTTTAT	58.254	52.632	0.00	0.00	0.00	1.40
1839	2002	1.912001	CGTGGTTCGCTCCGTTTATA	58.088	50.000	0.00	0.00	0.00	0.98
1840	2003	1.850441	CGTGGTTCGCTCCGTTTATAG	59.150	52.381	0.00	0.00	0.00	1.31
1841	2004	2.478370	CGTGGTTCGCTCCGTTTATAGA	60.478	50.000	0.00	0.00	0.00	1.98
1842	2005	3.114065	GTGGTTCGCTCCGTTTATAGAG	58.886	50.000	0.00	0.00	0.00	2.43
1843	2006	2.756760	TGGTTCGCTCCGTTTATAGAGT	59.243	45.455	0.00	0.00	32.47	3.24
1844	2007	3.947196	TGGTTCGCTCCGTTTATAGAGTA	59.053	43.478	0.00	0.00	32.47	2.59
1845	2008	4.201950	TGGTTCGCTCCGTTTATAGAGTAC	60.202	45.833	0.00	0.00	32.47	2.73
1846	2009	4.036144	GGTTCGCTCCGTTTATAGAGTACT	59.964	45.833	0.00	0.00	32.47	2.73
1847	2010	5.449725	GGTTCGCTCCGTTTATAGAGTACTT	60.450	44.000	0.00	0.00	32.47	2.24
1848	2011	6.238484	GGTTCGCTCCGTTTATAGAGTACTTA	60.238	42.308	0.00	0.00	32.47	2.24
1849	2012	6.925610	TCGCTCCGTTTATAGAGTACTTAA	57.074	37.500	0.00	0.00	32.47	1.85
1925	2088	0.030369	ATCGCTTAGTTAGACGCGGG	59.970	55.000	12.47	0.00	45.11	6.13
2146	2316	4.563374	GCCCACAAGTTTAAAATCATGCCT	60.563	41.667	0.00	0.00	0.00	4.75
2161	2331	4.264253	TCATGCCTACAAGTTCATCCAAG	58.736	43.478	0.00	0.00	0.00	3.61
2499	2689	1.686800	AATGCCTCCCATTGCACCC	60.687	57.895	0.00	0.00	42.44	4.61
2500	2690	4.738998	TGCCTCCCATTGCACCCG	62.739	66.667	0.00	0.00	31.31	5.28
2713	2905	3.781307	CCCCGAGGTCATCCGCAA	61.781	66.667	0.00	0.00	39.05	4.85
3069	3315	2.180518	GGCTAAATTTGCGGCGCA	59.819	55.556	33.07	33.07	36.47	6.09
3092	3338	0.793861	CTTGTTTAGCGCGCCTGTTA	59.206	50.000	30.33	11.09	0.00	2.41
3113	3359	6.859112	TTAGAGATGCTCTAAGGTCTGTTT	57.141	37.500	11.70	0.00	44.85	2.83
3114	3360	5.083533	AGAGATGCTCTAAGGTCTGTTTG	57.916	43.478	0.00	0.00	39.28	2.93
3115	3361	4.081198	AGAGATGCTCTAAGGTCTGTTTGG	60.081	45.833	0.00	0.00	39.28	3.28
3116	3362	3.584848	AGATGCTCTAAGGTCTGTTTGGT	59.415	43.478	0.00	0.00	0.00	3.67
3117	3363	4.777896	AGATGCTCTAAGGTCTGTTTGGTA	59.222	41.667	0.00	0.00	0.00	3.25
3118	3364	4.537135	TGCTCTAAGGTCTGTTTGGTAG	57.463	45.455	0.00	0.00	0.00	3.18
3119	3365	3.901844	TGCTCTAAGGTCTGTTTGGTAGT	59.098	43.478	0.00	0.00	0.00	2.73
3120	3366	5.081728	TGCTCTAAGGTCTGTTTGGTAGTA	58.918	41.667	0.00	0.00	0.00	1.82
3121	3367	5.185249	TGCTCTAAGGTCTGTTTGGTAGTAG	59.815	44.000	0.00	0.00	0.00	2.57
3140	3389	8.870242	GTAGTAGTACCAAAATTTTGCTAACG	57.130	34.615	22.90	12.65	36.86	3.18
3142	3391	7.578852	AGTAGTACCAAAATTTTGCTAACGAC	58.421	34.615	22.90	21.63	36.86	4.34
3154	3404	1.396996	GCTAACGACATTTGCGATGGT	59.603	47.619	0.00	0.00	29.33	3.55
3188	3439	8.357402	GCCAGAAAATAACAACTTTTTAGGAGA	58.643	33.333	0.00	0.00	0.00	3.71
3197	3448	6.883744	ACAACTTTTTAGGAGATTGGCAAAA	58.116	32.000	3.01	0.00	0.00	2.44
3198	3449	6.986231	ACAACTTTTTAGGAGATTGGCAAAAG	59.014	34.615	3.01	2.39	37.29	2.27
3199	3450	6.976934	ACTTTTTAGGAGATTGGCAAAAGA	57.023	33.333	3.01	0.00	35.63	2.52
3207	3458	5.779771	AGGAGATTGGCAAAAGAATTTGGTA	59.220	36.000	3.01	0.00	44.93	3.25
3208	3459	5.869344	GGAGATTGGCAAAAGAATTTGGTAC	59.131	40.000	3.01	0.00	44.93	3.34
3209	3460	6.295292	GGAGATTGGCAAAAGAATTTGGTACT	60.295	38.462	3.01	0.00	44.93	2.73
3213	3464	6.969993	TGGCAAAAGAATTTGGTACTTAGT	57.030	33.333	3.75	0.00	44.93	2.24
3214	3465	8.466617	TTGGCAAAAGAATTTGGTACTTAGTA	57.533	30.769	0.00	0.00	44.93	1.82
3215	3466	8.644374	TGGCAAAAGAATTTGGTACTTAGTAT	57.356	30.769	0.00	0.00	44.93	2.12
3216	3467	8.736244	TGGCAAAAGAATTTGGTACTTAGTATC	58.264	33.333	0.00	0.00	44.93	2.24
3217	3468	8.957466	GGCAAAAGAATTTGGTACTTAGTATCT	58.043	33.333	4.18	0.00	44.93	1.98
3246	3506	9.765795	ATCAGTTACTAGCCAGTATTTTACATC	57.234	33.333	0.00	0.00	37.12	3.06
3247	3507	8.755028	TCAGTTACTAGCCAGTATTTTACATCA	58.245	33.333	0.00	0.00	37.12	3.07
3249	3509	9.601217	AGTTACTAGCCAGTATTTTACATCAAG	57.399	33.333	0.00	0.00	37.12	3.02
3253	3566	5.203528	AGCCAGTATTTTACATCAAGCCAT	58.796	37.500	0.00	0.00	0.00	4.40
3259	3572	1.105457	TTACATCAAGCCATGCCTGC	58.895	50.000	0.00	0.00	0.00	4.85
3303	3616	2.125326	CCCACGAGTCATAGGGCGA	61.125	63.158	0.00	0.00	33.91	5.54
3325	3645	1.815840	GCTCTAAGTTGGCGCTCCC	60.816	63.158	7.64	0.00	0.00	4.30
3371	3698	0.451783	GCTCCGTTTTGCATGTAGGG	59.548	55.000	0.00	0.00	0.00	3.53
3382	3709	1.209504	GCATGTAGGGGTTGAGCTGTA	59.790	52.381	0.00	0.00	0.00	2.74
3383	3710	2.906354	CATGTAGGGGTTGAGCTGTAC	58.094	52.381	0.00	0.00	0.00	2.90
3384	3711	1.272807	TGTAGGGGTTGAGCTGTACC	58.727	55.000	0.00	0.00	0.00	3.34
3385	3712	0.175073	GTAGGGGTTGAGCTGTACCG	59.825	60.000	0.00	0.00	35.19	4.02
3386	3713	1.610554	TAGGGGTTGAGCTGTACCGC	61.611	60.000	18.23	18.23	45.02	5.68
3387	3714	2.813908	GGGTTGAGCTGTACCGCG	60.814	66.667	0.00	0.00	35.19	6.46
3388	3715	3.488090	GGTTGAGCTGTACCGCGC	61.488	66.667	0.00	6.07	34.40	6.86
3389	3716	3.838795	GTTGAGCTGTACCGCGCG	61.839	66.667	25.67	25.67	32.01	6.86
3523	3854	0.537371	GGTCACTGACCCAACCCAAG	60.537	60.000	16.54	0.00	46.19	3.61
3636	3972	3.379372	TCGACCCAGTTGCTATACACTAC	59.621	47.826	0.00	0.00	0.00	2.73
3716	4088	1.463674	AAGTGGATCCATTCGGTTGC	58.536	50.000	19.62	1.74	0.00	4.17
3723	4095	0.250124	TCCATTCGGTTGCAGACGTT	60.250	50.000	11.12	0.00	0.00	3.99
3751	4130	7.378966	TGTATAAGAAGCAGGCAGATATACAC	58.621	38.462	11.61	0.00	32.68	2.90
3790	4172	3.935203	GTGAACTAGTACATGCATGCAGT	59.065	43.478	26.69	23.37	0.00	4.40
3821	4205	1.080434	AGCCTCTTGTTCGTCTCGC	60.080	57.895	0.00	0.00	0.00	5.03
3825	4209	1.612156	CTCTTGTTCGTCTCGCTCAG	58.388	55.000	0.00	0.00	0.00	3.35
3894	4284	0.480252	GCTATCCCATTGGCCTTCCT	59.520	55.000	3.32	0.00	0.00	3.36
3961	4352	1.971357	CTTGGGTCGGCCTCATATACT	59.029	52.381	5.77	0.00	34.45	2.12
4075	4468	4.107029	CCGGGTCGGCCTCATATA	57.893	61.111	5.77	0.00	41.17	0.86
4076	4469	1.590147	CCGGGTCGGCCTCATATAC	59.410	63.158	5.77	0.00	41.17	1.47
4077	4470	1.590147	CGGGTCGGCCTCATATACC	59.410	63.158	5.77	0.00	34.45	2.73
4078	4471	1.885163	CGGGTCGGCCTCATATACCC	61.885	65.000	5.77	7.17	45.34	3.69
4079	4472	2.754648	GGTCGGCCTCATATACCCA	58.245	57.895	0.00	0.00	0.00	4.51
4080	4473	1.053424	GGTCGGCCTCATATACCCAA	58.947	55.000	0.00	0.00	0.00	4.12
4081	4474	1.628846	GGTCGGCCTCATATACCCAAT	59.371	52.381	0.00	0.00	0.00	3.16
4082	4475	2.615493	GGTCGGCCTCATATACCCAATG	60.615	54.545	0.00	0.00	0.00	2.82
4083	4476	1.628340	TCGGCCTCATATACCCAATGG	59.372	52.381	0.00	0.00	37.80	3.16
4095	4488	2.194201	CCCAATGGGTTGAACGTAGT	57.806	50.000	10.91	0.00	40.12	2.73
4096	4489	3.337694	CCCAATGGGTTGAACGTAGTA	57.662	47.619	10.91	0.00	37.84	1.82
4097	4490	3.881220	CCCAATGGGTTGAACGTAGTAT	58.119	45.455	10.91	0.00	37.84	2.12
4098	4491	4.266714	CCCAATGGGTTGAACGTAGTATT	58.733	43.478	10.91	0.00	37.84	1.89
4099	4492	4.703093	CCCAATGGGTTGAACGTAGTATTT	59.297	41.667	10.91	0.00	37.84	1.40
4100	4493	5.184287	CCCAATGGGTTGAACGTAGTATTTT	59.816	40.000	10.91	0.00	37.84	1.82
4101	4494	6.090129	CCAATGGGTTGAACGTAGTATTTTG	58.910	40.000	0.00	0.00	36.71	2.44
4102	4495	6.294286	CCAATGGGTTGAACGTAGTATTTTGT	60.294	38.462	0.00	0.00	36.71	2.83
4103	4496	7.094720	CCAATGGGTTGAACGTAGTATTTTGTA	60.095	37.037	0.00	0.00	36.71	2.41
4104	4497	6.783892	TGGGTTGAACGTAGTATTTTGTAC	57.216	37.500	0.00	0.00	45.00	2.90
4105	4498	5.404968	TGGGTTGAACGTAGTATTTTGTACG	59.595	40.000	0.00	0.57	45.00	3.67
4138	4531	4.827087	CAGATCGGGCGCTGTGCT	62.827	66.667	13.46	0.00	45.43	4.40
4156	4549	3.060205	GTGCTCGTTCTGAACTTCTGAAC	60.060	47.826	22.52	22.52	45.75	3.18
4163	4556	2.100252	TCTGAACTTCTGAACCGTCGTT	59.900	45.455	0.00	0.00	33.88	3.85
4201	4631	4.141287	ACCATTCGGTTGTTCTCAAATCA	58.859	39.130	0.00	0.00	46.31	2.57
4210	4640	6.308282	CGGTTGTTCTCAAATCAGAGTAGTAC	59.692	42.308	0.00	0.00	36.97	2.73
4212	4642	7.542824	GGTTGTTCTCAAATCAGAGTAGTACTC	59.457	40.741	20.73	20.73	39.14	2.59
4235	4665	6.627243	TCTATGTAGTTAACATCGCAACAGT	58.373	36.000	8.61	0.00	46.15	3.55
4245	4675	1.013596	TCGCAACAGTTTGGTCAGTG	58.986	50.000	0.00	0.00	32.81	3.66
4271	4701	1.375523	CCCCGTCCAAGAACCTTCG	60.376	63.158	0.00	0.00	0.00	3.79
4273	4703	1.669440	CCGTCCAAGAACCTTCGGA	59.331	57.895	0.00	0.00	40.29	4.55
4334	4769	2.570181	CCACCGTACCCACTCGAC	59.430	66.667	0.00	0.00	0.00	4.20
4336	4771	2.677875	ACCGTACCCACTCGACCC	60.678	66.667	0.00	0.00	0.00	4.46
4362	4797	1.810031	GCATGCACGTAGAGCCCATAA	60.810	52.381	14.21	0.00	45.43	1.90
4363	4798	2.138320	CATGCACGTAGAGCCCATAAG	58.862	52.381	0.00	0.00	45.43	1.73
4364	4799	0.179084	TGCACGTAGAGCCCATAAGC	60.179	55.000	0.00	0.00	45.43	3.09
4365	4800	2.575165	TGCACGTAGAGCCCATAAGCT	61.575	52.381	0.00	0.00	45.43	3.74
4366	4801	1.340248	GCACGTAGAGCCCATAAGCTA	59.660	52.381	0.00	0.00	45.15	3.32
4367	4802	2.608261	GCACGTAGAGCCCATAAGCTAG	60.608	54.545	0.00	0.00	45.15	3.42
4368	4803	1.614413	ACGTAGAGCCCATAAGCTAGC	59.386	52.381	6.62	6.62	45.15	3.42
4369	4804	1.889829	CGTAGAGCCCATAAGCTAGCT	59.110	52.381	12.68	12.68	45.15	3.32
4371	4806	3.925453	GAGCCCATAAGCTAGCTCC	57.075	57.895	19.65	2.74	45.15	4.70
4372	4807	1.347062	GAGCCCATAAGCTAGCTCCT	58.653	55.000	19.65	5.85	45.15	3.69
4373	4808	1.275010	GAGCCCATAAGCTAGCTCCTC	59.725	57.143	19.65	12.53	45.15	3.71
4374	4809	0.323302	GCCCATAAGCTAGCTCCTCC	59.677	60.000	19.65	1.02	0.00	4.30
4375	4810	0.980423	CCCATAAGCTAGCTCCTCCC	59.020	60.000	19.65	0.00	0.00	4.30
4376	4811	1.484065	CCCATAAGCTAGCTCCTCCCT	60.484	57.143	19.65	3.31	0.00	4.20
4377	4812	1.899142	CCATAAGCTAGCTCCTCCCTC	59.101	57.143	19.65	0.00	0.00	4.30
4378	4813	1.899142	CATAAGCTAGCTCCTCCCTCC	59.101	57.143	19.65	0.00	0.00	4.30
4379	4814	0.178987	TAAGCTAGCTCCTCCCTCCG	60.179	60.000	19.65	0.00	0.00	4.63
4380	4815	2.123640	GCTAGCTCCTCCCTCCGT	60.124	66.667	7.70	0.00	0.00	4.69
4381	4816	1.758906	GCTAGCTCCTCCCTCCGTT	60.759	63.158	7.70	0.00	0.00	4.44
4382	4817	1.740332	GCTAGCTCCTCCCTCCGTTC	61.740	65.000	7.70	0.00	0.00	3.95
4383	4818	1.076192	TAGCTCCTCCCTCCGTTCC	60.076	63.158	0.00	0.00	0.00	3.62
4384	4819	1.581923	TAGCTCCTCCCTCCGTTCCT	61.582	60.000	0.00	0.00	0.00	3.36
4385	4820	1.076192	GCTCCTCCCTCCGTTCCTA	60.076	63.158	0.00	0.00	0.00	2.94
4386	4821	0.686769	GCTCCTCCCTCCGTTCCTAA	60.687	60.000	0.00	0.00	0.00	2.69
4387	4822	1.861982	CTCCTCCCTCCGTTCCTAAA	58.138	55.000	0.00	0.00	0.00	1.85
4388	4823	2.399580	CTCCTCCCTCCGTTCCTAAAT	58.600	52.381	0.00	0.00	0.00	1.40
4389	4824	3.573695	CTCCTCCCTCCGTTCCTAAATA	58.426	50.000	0.00	0.00	0.00	1.40
4390	4825	4.161102	CTCCTCCCTCCGTTCCTAAATAT	58.839	47.826	0.00	0.00	0.00	1.28
4391	4826	4.563782	TCCTCCCTCCGTTCCTAAATATT	58.436	43.478	0.00	0.00	0.00	1.28
4392	4827	4.973211	TCCTCCCTCCGTTCCTAAATATTT	59.027	41.667	5.89	5.89	0.00	1.40
4393	4828	5.063880	CCTCCCTCCGTTCCTAAATATTTG	58.936	45.833	11.05	1.40	0.00	2.32
4394	4829	5.397559	CCTCCCTCCGTTCCTAAATATTTGT	60.398	44.000	11.05	0.00	0.00	2.83
4395	4830	5.677567	TCCCTCCGTTCCTAAATATTTGTC	58.322	41.667	11.05	0.00	0.00	3.18
4396	4831	5.427481	TCCCTCCGTTCCTAAATATTTGTCT	59.573	40.000	11.05	0.00	0.00	3.41
4397	4832	6.069847	TCCCTCCGTTCCTAAATATTTGTCTT	60.070	38.462	11.05	0.00	0.00	3.01
4398	4833	6.602009	CCCTCCGTTCCTAAATATTTGTCTTT	59.398	38.462	11.05	0.00	0.00	2.52
4399	4834	7.201705	CCCTCCGTTCCTAAATATTTGTCTTTC	60.202	40.741	11.05	0.00	0.00	2.62
4400	4835	7.553044	CCTCCGTTCCTAAATATTTGTCTTTCT	59.447	37.037	11.05	0.00	0.00	2.52
4401	4836	9.595823	CTCCGTTCCTAAATATTTGTCTTTCTA	57.404	33.333	11.05	0.00	0.00	2.10
4402	4837	9.595823	TCCGTTCCTAAATATTTGTCTTTCTAG	57.404	33.333	11.05	0.00	0.00	2.43
4403	4838	9.595823	CCGTTCCTAAATATTTGTCTTTCTAGA	57.404	33.333	11.05	0.00	0.00	2.43
4415	4850	8.746052	TTTGTCTTTCTAGAGGTTTCAAATGA	57.254	30.769	0.00	0.00	0.00	2.57
4416	4851	8.924511	TTGTCTTTCTAGAGGTTTCAAATGAT	57.075	30.769	0.00	0.00	0.00	2.45
4417	4852	8.327941	TGTCTTTCTAGAGGTTTCAAATGATG	57.672	34.615	0.00	0.00	0.00	3.07
4418	4853	8.156820	TGTCTTTCTAGAGGTTTCAAATGATGA	58.843	33.333	0.00	0.00	35.85	2.92
4419	4854	8.447053	GTCTTTCTAGAGGTTTCAAATGATGAC	58.553	37.037	0.00	0.00	37.92	3.06
4420	4855	8.378565	TCTTTCTAGAGGTTTCAAATGATGACT	58.621	33.333	0.00	0.00	37.92	3.41
4421	4856	9.658799	CTTTCTAGAGGTTTCAAATGATGACTA	57.341	33.333	0.00	0.00	37.92	2.59
4422	4857	9.436957	TTTCTAGAGGTTTCAAATGATGACTAC	57.563	33.333	0.00	0.00	37.92	2.73
4423	4858	8.134202	TCTAGAGGTTTCAAATGATGACTACA	57.866	34.615	0.00	0.00	37.92	2.74
4424	4859	8.762645	TCTAGAGGTTTCAAATGATGACTACAT	58.237	33.333	0.00	0.00	37.92	2.29
4426	4861	8.723942	AGAGGTTTCAAATGATGACTACATAC	57.276	34.615	0.00	0.00	37.92	2.39
4427	4862	7.492669	AGAGGTTTCAAATGATGACTACATACG	59.507	37.037	0.00	0.00	37.92	3.06
4428	4863	6.538742	AGGTTTCAAATGATGACTACATACGG	59.461	38.462	0.00	0.00	37.92	4.02
4429	4864	6.537301	GGTTTCAAATGATGACTACATACGGA	59.463	38.462	0.00	0.00	37.92	4.69
4430	4865	7.065324	GGTTTCAAATGATGACTACATACGGAA	59.935	37.037	0.00	0.00	37.92	4.30
4431	4866	7.534085	TTCAAATGATGACTACATACGGAAC	57.466	36.000	0.00	0.00	37.92	3.62
4432	4867	6.635755	TCAAATGATGACTACATACGGAACA	58.364	36.000	0.00	0.00	36.82	3.18
4433	4868	7.100409	TCAAATGATGACTACATACGGAACAA	58.900	34.615	0.00	0.00	36.82	2.83
4434	4869	7.604545	TCAAATGATGACTACATACGGAACAAA	59.395	33.333	0.00	0.00	36.82	2.83
4435	4870	7.915293	AATGATGACTACATACGGAACAAAA	57.085	32.000	0.00	0.00	36.82	2.44
4436	4871	8.506168	AATGATGACTACATACGGAACAAAAT	57.494	30.769	0.00	0.00	36.82	1.82
4437	4872	7.302350	TGATGACTACATACGGAACAAAATG	57.698	36.000	0.00	0.00	36.82	2.32
4438	4873	7.100409	TGATGACTACATACGGAACAAAATGA	58.900	34.615	0.00	0.00	36.82	2.57
4439	4874	6.961359	TGACTACATACGGAACAAAATGAG	57.039	37.500	0.00	0.00	0.00	2.90
4440	4875	6.460781	TGACTACATACGGAACAAAATGAGT	58.539	36.000	0.00	0.00	0.00	3.41
4441	4876	6.367695	TGACTACATACGGAACAAAATGAGTG	59.632	38.462	0.00	0.00	0.00	3.51
4442	4877	6.460781	ACTACATACGGAACAAAATGAGTGA	58.539	36.000	0.00	0.00	0.00	3.41
4443	4878	6.932400	ACTACATACGGAACAAAATGAGTGAA	59.068	34.615	0.00	0.00	0.00	3.18
4444	4879	6.817765	ACATACGGAACAAAATGAGTGAAT	57.182	33.333	0.00	0.00	0.00	2.57
4445	4880	6.842163	ACATACGGAACAAAATGAGTGAATC	58.158	36.000	0.00	0.00	0.00	2.52
4446	4881	6.655003	ACATACGGAACAAAATGAGTGAATCT	59.345	34.615	0.00	0.00	0.00	2.40
4447	4882	7.822334	ACATACGGAACAAAATGAGTGAATCTA	59.178	33.333	0.00	0.00	0.00	1.98
4448	4883	6.481954	ACGGAACAAAATGAGTGAATCTAC	57.518	37.500	0.00	0.00	0.00	2.59
4449	4884	5.995282	ACGGAACAAAATGAGTGAATCTACA	59.005	36.000	0.00	0.00	0.00	2.74
4450	4885	6.073222	ACGGAACAAAATGAGTGAATCTACAC	60.073	38.462	0.00	0.00	40.60	2.90
4485	4920	8.893563	TGTCTATATACATCCATATGTGGTGA	57.106	34.615	8.51	0.00	45.99	4.02
4486	4921	8.749354	TGTCTATATACATCCATATGTGGTGAC	58.251	37.037	8.51	5.34	45.99	3.67
4487	4922	8.198109	GTCTATATACATCCATATGTGGTGACC	58.802	40.741	8.51	0.00	45.99	4.02
4488	4923	6.950860	ATATACATCCATATGTGGTGACCA	57.049	37.500	0.00	0.00	45.99	4.02
4489	4924	5.848286	ATACATCCATATGTGGTGACCAT	57.152	39.130	7.94	0.00	45.99	3.55
4490	4925	4.524802	ACATCCATATGTGGTGACCATT	57.475	40.909	7.94	0.86	44.79	3.16
4491	4926	4.870636	ACATCCATATGTGGTGACCATTT	58.129	39.130	7.94	0.45	44.79	2.32
4492	4927	4.646040	ACATCCATATGTGGTGACCATTTG	59.354	41.667	7.94	3.39	44.79	2.32
4493	4928	4.582973	TCCATATGTGGTGACCATTTGA	57.417	40.909	7.94	0.00	46.16	2.69
4494	4929	4.928263	TCCATATGTGGTGACCATTTGAA	58.072	39.130	7.94	0.00	46.16	2.69
4495	4930	5.328565	TCCATATGTGGTGACCATTTGAAA	58.671	37.500	7.94	0.00	46.16	2.69
4496	4931	5.957168	TCCATATGTGGTGACCATTTGAAAT	59.043	36.000	7.94	0.00	46.16	2.17
4497	4932	6.096705	TCCATATGTGGTGACCATTTGAAATC	59.903	38.462	7.94	0.00	46.16	2.17
4498	4933	6.097270	CCATATGTGGTGACCATTTGAAATCT	59.903	38.462	7.94	0.00	40.83	2.40
4499	4934	5.649782	ATGTGGTGACCATTTGAAATCTC	57.350	39.130	7.94	0.00	35.28	2.75
4500	4935	4.728772	TGTGGTGACCATTTGAAATCTCT	58.271	39.130	7.94	0.00	35.28	3.10
4501	4936	5.875224	TGTGGTGACCATTTGAAATCTCTA	58.125	37.500	7.94	0.00	35.28	2.43
4502	4937	5.939883	TGTGGTGACCATTTGAAATCTCTAG	59.060	40.000	7.94	0.00	35.28	2.43
4503	4938	6.173339	GTGGTGACCATTTGAAATCTCTAGA	58.827	40.000	7.94	0.00	35.28	2.43
4504	4939	6.655003	GTGGTGACCATTTGAAATCTCTAGAA	59.345	38.462	7.94	0.00	35.28	2.10
4505	4940	7.174946	GTGGTGACCATTTGAAATCTCTAGAAA	59.825	37.037	7.94	0.00	35.28	2.52
4506	4941	7.391554	TGGTGACCATTTGAAATCTCTAGAAAG	59.608	37.037	0.00	0.00	0.00	2.62
4507	4942	7.607991	GGTGACCATTTGAAATCTCTAGAAAGA	59.392	37.037	0.00	0.00	0.00	2.52
4508	4943	8.447053	GTGACCATTTGAAATCTCTAGAAAGAC	58.553	37.037	0.00	0.00	0.00	3.01
4509	4944	8.156820	TGACCATTTGAAATCTCTAGAAAGACA	58.843	33.333	0.00	0.00	0.00	3.41
4510	4945	8.924511	ACCATTTGAAATCTCTAGAAAGACAA	57.075	30.769	0.00	0.00	0.00	3.18
4511	4946	9.354673	ACCATTTGAAATCTCTAGAAAGACAAA	57.645	29.630	0.00	4.41	0.00	2.83
4524	4959	9.595823	TCTAGAAAGACAAATATTTAGGAACGG	57.404	33.333	0.00	0.00	0.00	4.44
4525	4960	9.595823	CTAGAAAGACAAATATTTAGGAACGGA	57.404	33.333	0.00	0.00	0.00	4.69
4526	4961	8.494016	AGAAAGACAAATATTTAGGAACGGAG	57.506	34.615	0.00	0.00	0.00	4.63
4527	4962	7.553044	AGAAAGACAAATATTTAGGAACGGAGG	59.447	37.037	0.00	0.00	0.00	4.30
4528	4963	5.681639	AGACAAATATTTAGGAACGGAGGG	58.318	41.667	0.00	0.00	0.00	4.30
4529	4964	5.427481	AGACAAATATTTAGGAACGGAGGGA	59.573	40.000	0.00	0.00	0.00	4.20
4530	4965	5.681639	ACAAATATTTAGGAACGGAGGGAG	58.318	41.667	0.00	0.00	0.00	4.30
4601	5042	2.494471	TCCATGTACCTGTACTGTTCCG	59.506	50.000	8.75	0.00	37.00	4.30
4605	5046	2.294233	TGTACCTGTACTGTTCCGACAC	59.706	50.000	8.75	0.00	37.00	3.67
4713	5159	7.284919	TCTGCAGGATAATTAACGACAGATA	57.715	36.000	15.13	0.00	0.00	1.98
4750	5196	2.263540	CGGGTCACGGTTGGTAGG	59.736	66.667	0.00	0.00	39.42	3.18
4842	5288	0.880278	GCTGTCTCGCTTGTGGTCAA	60.880	55.000	0.00	0.00	0.00	3.18
4853	5644	1.302192	GTGGTCAACAGGCCGCTTA	60.302	57.895	0.00	0.00	32.87	3.09
4854	5645	0.887387	GTGGTCAACAGGCCGCTTAA	60.887	55.000	0.00	0.00	32.87	1.85
4855	5646	0.037590	TGGTCAACAGGCCGCTTAAT	59.962	50.000	0.00	0.00	0.00	1.40
4943	6380	0.586319	AAACCACTCATTCACGTGCG	59.414	50.000	11.67	1.57	0.00	5.34
4959	6396	4.965062	ACGTGCGTGATAAAAATACTTGG	58.035	39.130	0.00	0.00	0.00	3.61
4964	6534	6.964934	GTGCGTGATAAAAATACTTGGTTAGG	59.035	38.462	0.00	0.00	0.00	2.69
4993	6563	4.382685	CCGATCGGTGTATATATGGCCTTT	60.383	45.833	26.35	0.00	0.00	3.11
5025	6595	3.201487	AGTGATGGACCATGTGATGTGAT	59.799	43.478	12.99	0.00	0.00	3.06
5026	6596	3.314357	GTGATGGACCATGTGATGTGATG	59.686	47.826	12.99	0.00	0.00	3.07
5027	6597	1.753930	TGGACCATGTGATGTGATGC	58.246	50.000	0.00	0.00	0.00	3.91
5028	6598	1.004511	TGGACCATGTGATGTGATGCA	59.995	47.619	0.00	0.00	0.00	3.96
5029	6599	2.093890	GGACCATGTGATGTGATGCAA	58.906	47.619	0.00	0.00	0.00	4.08
5030	6600	2.691526	GGACCATGTGATGTGATGCAAT	59.308	45.455	0.00	0.00	0.00	3.56
5063	6633	1.871039	AGACCATTGTCGTTTTGTCCG	59.129	47.619	0.00	0.00	46.51	4.79
5110	6680	2.661537	CTGCAGCGGTCGTGTGAA	60.662	61.111	0.00	0.00	0.00	3.18
5112	6682	1.568612	CTGCAGCGGTCGTGTGAATT	61.569	55.000	0.00	0.00	0.00	2.17
5113	6683	1.154413	GCAGCGGTCGTGTGAATTG	60.154	57.895	0.00	0.00	0.00	2.32
5114	6684	1.565156	GCAGCGGTCGTGTGAATTGA	61.565	55.000	0.00	0.00	0.00	2.57
5324	6911	0.464373	CCATGAAGATCCACACCCCG	60.464	60.000	0.00	0.00	0.00	5.73
5336	6923	4.669773	ACCCCGGCCTACCCTGTT	62.670	66.667	0.00	0.00	0.00	3.16
5348	6935	1.959226	CCCTGTTGTTGACGTCGGG	60.959	63.158	11.62	9.51	0.00	5.14
5442	7049	9.837525	TTTTTGTTTGAAAATCAGGTTGAAATG	57.162	25.926	0.00	0.00	0.00	2.32
5550	7158	3.536956	TGGCTACAAGAGGGAAATACG	57.463	47.619	0.00	0.00	0.00	3.06
5569	7177	3.240069	ACGCACGTGAACATAGTTAGAC	58.760	45.455	22.23	0.00	0.00	2.59
5582	7190	1.068125	AGTTAGACGCGCACACACATA	60.068	47.619	5.73	0.00	0.00	2.29
5587	7195	3.194861	AGACGCGCACACACATAAATAT	58.805	40.909	5.73	0.00	0.00	1.28
5655	7263	2.224917	TGGGTATCAAACTTGGTCCACC	60.225	50.000	0.00	0.00	0.00	4.61
5695	7506	8.240682	TGAAATTTCATGAAGTAATTACACCCG	58.759	33.333	16.91	2.63	31.01	5.28
5701	7512	4.819769	TGAAGTAATTACACCCGTGGTAC	58.180	43.478	17.65	0.00	32.11	3.34
5710	7521	0.681175	ACCCGTGGTACTTTTAGCGT	59.319	50.000	0.00	0.00	32.11	5.07
5767	7578	8.764287	GCAAACAGTGTTTTTGAATATAGCTTT	58.236	29.630	18.59	0.00	36.24	3.51
5829	7644	7.971722	TGAATGTCAATACAAAATCTGATGCAG	59.028	33.333	0.00	0.00	39.58	4.41
5839	7654	8.697846	ACAAAATCTGATGCAGAAATAACATG	57.302	30.769	0.78	0.00	44.04	3.21
5875	7690	6.926826	ACATGCATTAATTTATGATGTGGCAG	59.073	34.615	8.58	2.37	31.35	4.85
5901	7718	7.164826	GCGTTGCATTCATAGAGTAATGAAAAG	59.835	37.037	3.61	0.00	46.12	2.27
5941	7759	5.123027	TCGCATGCATAACTTGTTTATGTGA	59.877	36.000	19.57	0.00	46.30	3.58
5962	7780	4.580167	TGATATGGTTGCATGGCTAGAAAC	59.420	41.667	0.00	0.00	0.00	2.78
5972	7790	6.226052	TGCATGGCTAGAAACATAGATAGTG	58.774	40.000	0.00	0.00	0.00	2.74
5973	7791	5.641209	GCATGGCTAGAAACATAGATAGTGG	59.359	44.000	0.00	0.00	0.00	4.00
5977	7795	6.842280	TGGCTAGAAACATAGATAGTGGGTTA	59.158	38.462	0.00	0.00	0.00	2.85
5979	7797	9.032624	GGCTAGAAACATAGATAGTGGGTTATA	57.967	37.037	0.00	0.00	0.00	0.98
6045	8173	8.787852	GGAATTGAAAACATAGGATACAGGATC	58.212	37.037	0.00	0.00	41.41	3.36
6077	8205	7.995463	TTTTTCTCAACCGAAACAATTTAGG	57.005	32.000	0.00	0.00	40.73	2.69
6127	8255	7.556844	AGACCTTATAACCACAATGTGTAGAG	58.443	38.462	12.79	0.00	0.00	2.43
6168	8296	8.613060	TTGGTGCAATTTCAATGCTTAAAATA	57.387	26.923	0.00	0.00	44.14	1.40
6271	8399	8.541133	TTCAATCATGATAGTACAACGAACAA	57.459	30.769	9.04	0.00	34.96	2.83
6272	8400	8.716646	TCAATCATGATAGTACAACGAACAAT	57.283	30.769	9.04	0.00	0.00	2.71
6306	8434	9.847224	ATAAAACTTACATCCAAATCCGTAGAT	57.153	29.630	0.00	0.00	0.00	1.98
6334	8462	3.994392	AGCGACGAATACAAACACTGAAT	59.006	39.130	0.00	0.00	0.00	2.57
6365	8493	2.436646	CGCCTCCGTCATTGCCTT	60.437	61.111	0.00	0.00	0.00	4.35
6407	8535	6.480981	GGCAAAACTTGTTGTAGTAGACAGTA	59.519	38.462	0.00	0.00	39.88	2.74
6584	8719	3.175710	ACCTCCACACACCCACCC	61.176	66.667	0.00	0.00	0.00	4.61
6628	8766	2.764547	GGCTAGGCGGGGAGAACT	60.765	66.667	0.00	0.00	0.00	3.01
6706	8845	4.436523	CCTAACAAAACGCGAAGAAACAAG	59.563	41.667	15.93	0.63	0.00	3.16
6720	8859	4.016444	AGAAACAAGTGAAAACAGAGCCA	58.984	39.130	0.00	0.00	0.00	4.75
6723	8862	3.554934	ACAAGTGAAAACAGAGCCATCA	58.445	40.909	0.00	0.00	0.00	3.07
6726	8865	1.873591	GTGAAAACAGAGCCATCACGT	59.126	47.619	0.00	0.00	32.09	4.49
6778	8917	1.403687	GCTCTAAGGCCACCGGAGAT	61.404	60.000	9.46	0.00	0.00	2.75
6852	8992	4.847444	GAGGAGGCAGCCCGCTTC	62.847	72.222	8.22	2.77	45.75	3.86
6878	9018	7.893236	CGTGTCAACTGAAATCTTTTCTATACG	59.107	37.037	2.08	0.00	0.00	3.06
6894	9034	1.493772	TACGCGGAAGTTCTGTTGTG	58.506	50.000	12.47	5.50	0.00	3.33
6898	9038	2.477189	CGCGGAAGTTCTGTTGTGTTTT	60.477	45.455	13.23	0.00	0.00	2.43
6903	9043	5.474825	GGAAGTTCTGTTGTGTTTTTGGAA	58.525	37.500	2.25	0.00	0.00	3.53
7046	9191	1.340017	TGCTGCGGATTTAGAAAGCCT	60.340	47.619	7.63	0.00	42.16	4.58
7050	9195	2.237643	TGCGGATTTAGAAAGCCTACCA	59.762	45.455	7.63	0.17	42.16	3.25
7142	9287	3.074369	TCCTGCCGGCGATGAAGA	61.074	61.111	23.90	8.86	0.00	2.87
7148	9293	1.811266	CCGGCGATGAAGACTGTGG	60.811	63.158	9.30	0.00	0.00	4.17
7189	9334	4.382320	GACGGCAAGCGGTACCCA	62.382	66.667	6.25	0.00	0.00	4.51
7234	9379	3.315765	CTACCGGAGCACAACCAAA	57.684	52.632	9.46	0.00	0.00	3.28
7339	9484	1.819928	ATAGAACACCAATGCACGCA	58.180	45.000	0.00	0.00	0.00	5.24
7346	9491	2.476051	CAATGCACGCACGTCCTC	59.524	61.111	0.00	0.00	0.00	3.71
7354	9499	2.740055	GCACGTCCTCTGCACCAG	60.740	66.667	0.00	0.00	34.56	4.00
7360	9505	3.060615	CCTCTGCACCAGCTTGGC	61.061	66.667	2.50	0.00	42.67	4.52
7394	9562	8.393366	GGATCGGTACATCATGATTCATAATTG	58.607	37.037	5.16	0.00	0.00	2.32
7522	9702	1.011968	TCGTCTTTCCGGAACATGCG	61.012	55.000	18.64	18.17	0.00	4.73
7543	9723	1.893168	GCGTGCGTTCATGTACCGTT	61.893	55.000	0.00	0.00	0.00	4.44
7556	9736	0.799152	TACCGTTCGTGCTACGCATG	60.799	55.000	1.75	1.75	45.79	4.06
7586	9767	2.792542	GCACGCCTGAAAATAGACATGC	60.793	50.000	0.00	0.00	0.00	4.06
7606	9787	8.803397	ACATGCCGATCTGTACTATTACTATA	57.197	34.615	0.00	0.00	0.00	1.31
7607	9788	9.409918	ACATGCCGATCTGTACTATTACTATAT	57.590	33.333	0.00	0.00	0.00	0.86
7611	9792	9.828852	GCCGATCTGTACTATTACTATATATGC	57.171	37.037	0.00	0.00	0.00	3.14
7652	9833	0.459585	GGGACGCAAACTCGCTGATA	60.460	55.000	0.00	0.00	0.00	2.15
7666	9847	2.397413	CTGATAATCCGGCCGGCCTT	62.397	60.000	41.01	32.65	34.68	4.35
7667	9848	1.228154	GATAATCCGGCCGGCCTTT	60.228	57.895	41.01	30.95	34.68	3.11
7678	9859	0.323629	CCGGCCTTTTCACCTCTGTA	59.676	55.000	0.00	0.00	0.00	2.74
7683	9864	4.615912	CGGCCTTTTCACCTCTGTATTTTG	60.616	45.833	0.00	0.00	0.00	2.44
7854	10035	2.456119	CGCCGAGGACATCAGCAAC	61.456	63.158	0.00	0.00	30.07	4.17
7862	10043	3.406764	AGGACATCAGCAACAAGAAGAC	58.593	45.455	0.00	0.00	0.00	3.01
7952	10152	5.560760	GCGATGGGTGTGTTGTGATTATATG	60.561	44.000	0.00	0.00	0.00	1.78
8015	10215	4.519213	TGTGATTACCGGGGAAACTATTG	58.481	43.478	6.32	0.00	0.00	1.90
8016	10216	3.314357	GTGATTACCGGGGAAACTATTGC	59.686	47.826	6.32	0.00	0.00	3.56
8035	10235	1.308998	CCTGTTCGTTGCCTTGTCTT	58.691	50.000	0.00	0.00	0.00	3.01
8123	10328	0.517755	CGACTCGCACTGACTGTACT	59.482	55.000	0.00	0.00	0.00	2.73
8159	10364	5.764131	CACTGTTATTCTTTTTGCGGGTTA	58.236	37.500	0.00	0.00	0.00	2.85
8171	10376	3.613494	TGCGGGTTAACTATGTAGCAA	57.387	42.857	5.42	0.00	0.00	3.91
8195	10400	1.663173	CGGGCCAATGTTCGGTTTT	59.337	52.632	4.39	0.00	0.00	2.43
8196	10401	0.032815	CGGGCCAATGTTCGGTTTTT	59.967	50.000	4.39	0.00	0.00	1.94
8217	10422	1.343069	TTTTCCGGGGGAATGTTTGG	58.657	50.000	0.00	0.00	41.71	3.28
8218	10423	0.188834	TTTCCGGGGGAATGTTTGGT	59.811	50.000	0.00	0.00	41.71	3.67
8219	10424	0.188834	TTCCGGGGGAATGTTTGGTT	59.811	50.000	0.00	0.00	36.71	3.67
8220	10425	0.188834	TCCGGGGGAATGTTTGGTTT	59.811	50.000	0.00	0.00	0.00	3.27
8232	10437	6.183360	GGAATGTTTGGTTTATAATCCGTCGT	60.183	38.462	7.85	1.09	0.00	4.34
8242	10447	4.875544	ATAATCCGTCGTCCATTTGTTG	57.124	40.909	0.00	0.00	0.00	3.33
8278	10740	6.814043	ACGTAAGACTTTCTAGTGTTCCTTT	58.186	36.000	0.00	0.00	38.64	3.11
8283	10745	4.377897	ACTTTCTAGTGTTCCTTTGGTCG	58.622	43.478	0.00	0.00	31.99	4.79
8350	10812	4.992381	ACGAAAGTGTAATTGTGAGCTC	57.008	40.909	6.82	6.82	46.97	4.09
8354	10816	2.611518	AGTGTAATTGTGAGCTCGAGC	58.388	47.619	30.01	30.01	42.49	5.03
8369	10831	3.512680	CTCGAGCGAACAGTAAATTCCT	58.487	45.455	0.00	0.00	0.00	3.36
8370	10832	3.250744	TCGAGCGAACAGTAAATTCCTG	58.749	45.455	4.08	4.08	36.01	3.86
8377	10839	8.106247	AGCGAACAGTAAATTCCTGAAAAATA	57.894	30.769	11.00	0.00	34.04	1.40
8378	10840	8.739972	AGCGAACAGTAAATTCCTGAAAAATAT	58.260	29.630	11.00	0.00	34.04	1.28
8379	10841	9.353999	GCGAACAGTAAATTCCTGAAAAATATT	57.646	29.630	11.00	0.00	34.04	1.28
8423	10885	8.937884	TGATTATTTTGGCAAGAAACATTGATG	58.062	29.630	0.00	0.00	31.55	3.07
8448	10910	4.688511	TTTCTACACGTGTGCAAACTTT	57.311	36.364	30.83	2.89	0.00	2.66
8455	10917	3.091022	GTGCAAACTTTCGCGGCG	61.091	61.111	17.70	17.70	0.00	6.46
8498	10960	4.558538	ATCGATGCTACAAAATGCTTCC	57.441	40.909	0.00	0.00	32.10	3.46
8500	10962	3.126858	TCGATGCTACAAAATGCTTCCAC	59.873	43.478	0.00	0.00	32.10	4.02
8506	10968	4.990426	GCTACAAAATGCTTCCACAAACAT	59.010	37.500	0.00	0.00	0.00	2.71
8552	11014	1.934589	TTCTTCACACACACCTCACG	58.065	50.000	0.00	0.00	0.00	4.35
8553	11015	0.104120	TCTTCACACACACCTCACGG	59.896	55.000	0.00	0.00	0.00	4.94
8554	11016	0.104120	CTTCACACACACCTCACGGA	59.896	55.000	0.00	0.00	0.00	4.69
8555	11017	0.756294	TTCACACACACCTCACGGAT	59.244	50.000	0.00	0.00	0.00	4.18
8557	11019	0.249868	CACACACACCTCACGGATGT	60.250	55.000	0.00	0.00	34.80	3.06
8558	11020	0.249868	ACACACACCTCACGGATGTG	60.250	55.000	14.48	14.48	46.76	3.21
8559	11021	0.249868	CACACACCTCACGGATGTGT	60.250	55.000	3.48	3.48	46.68	3.72
8560	11022	0.468226	ACACACCTCACGGATGTGTT	59.532	50.000	10.59	3.50	45.11	3.32
8561	11023	1.134220	ACACACCTCACGGATGTGTTT	60.134	47.619	10.59	4.58	45.11	2.83
8562	11024	1.531149	CACACCTCACGGATGTGTTTC	59.469	52.381	10.59	0.00	46.49	2.78
8563	11025	1.156736	CACCTCACGGATGTGTTTCC	58.843	55.000	0.00	0.00	46.49	3.13
8564	11026	0.762418	ACCTCACGGATGTGTTTCCA	59.238	50.000	0.00	0.00	46.49	3.53
8565	11027	1.351017	ACCTCACGGATGTGTTTCCAT	59.649	47.619	0.00	0.00	46.49	3.41
8566	11028	2.009774	CCTCACGGATGTGTTTCCATC	58.990	52.381	0.00	0.00	46.49	3.51
8567	11029	2.615240	CCTCACGGATGTGTTTCCATCA	60.615	50.000	3.83	0.00	46.49	3.07
8665	11127	3.935818	TGGAGTTTACTGTTCACCCAA	57.064	42.857	0.00	0.00	0.00	4.12
8668	11130	3.477530	GAGTTTACTGTTCACCCAAGCT	58.522	45.455	0.00	0.00	0.00	3.74
8695	11157	2.656560	GCTCGAGCTAAGAAAGTCCA	57.343	50.000	29.88	0.00	38.21	4.02
8717	11179	1.479323	GTATGGAAGTGGAGCGGTACA	59.521	52.381	0.00	0.00	0.00	2.90
8718	11180	0.537188	ATGGAAGTGGAGCGGTACAG	59.463	55.000	0.00	0.00	0.00	2.74
8753	11215	1.890174	GAAAAGGCACCATTCCCCG	59.110	57.895	0.00	0.00	0.00	5.73
8757	11219	2.124695	GGCACCATTCCCCGTCTC	60.125	66.667	0.00	0.00	0.00	3.36
8758	11220	2.670148	GGCACCATTCCCCGTCTCT	61.670	63.158	0.00	0.00	0.00	3.10
8768	11230	2.941480	TCCCCGTCTCTCCATAACTAC	58.059	52.381	0.00	0.00	0.00	2.73
8790	11252	3.466803	AACCCCCACCCTTTGCCTG	62.467	63.158	0.00	0.00	0.00	4.85
8825	11287	2.428890	CTCCTCTCTTGATAGCGGTTGT	59.571	50.000	0.00	0.00	0.00	3.32
8846	11308	0.182299	CCATCCCTTGCTCCCTCTTC	59.818	60.000	0.00	0.00	0.00	2.87
8856	11318	1.444119	CTCCCTCTTCTCGGCTCTCG	61.444	65.000	0.00	0.00	40.90	4.04
8878	11340	4.201940	CGCTGTGAATCCAATGCTAATTCA	60.202	41.667	0.00	0.00	37.14	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
56	63	2.277404	GTCGAGCCCTCCCTCTCT	59.723	66.667	0.00	0.00	0.00	3.10
82	118	2.277404	GAGCTCTCCCTCTCCCGT	59.723	66.667	6.43	0.00	0.00	5.28
92	128	3.972276	CCTAGCCGCCGAGCTCTC	61.972	72.222	12.85	2.37	43.67	3.20
228	270	1.551883	GGTCAGCCTTGCCATTGATTT	59.448	47.619	0.00	0.00	0.00	2.17
344	388	0.605319	CGGGTCTAGCAGTTTTGGCA	60.605	55.000	0.00	0.00	0.00	4.92
428	474	1.376812	GGAGCCCGATTTTCACCGT	60.377	57.895	0.00	0.00	0.00	4.83
432	479	1.302949	CCCAGGAGCCCGATTTTCA	59.697	57.895	0.00	0.00	0.00	2.69
454	502	0.958382	CCGAAAAATCGGCCCAGTCA	60.958	55.000	4.12	0.00	46.76	3.41
494	542	0.321671	CCTCAGAAAGACCTCCGCAA	59.678	55.000	0.00	0.00	0.00	4.85
497	545	1.153745	CGCCTCAGAAAGACCTCCG	60.154	63.158	0.00	0.00	0.00	4.63
503	551	3.695606	AGCCGCGCCTCAGAAAGA	61.696	61.111	0.00	0.00	0.00	2.52
535	585	1.463674	GGCATTTCCGATGTTGACCT	58.536	50.000	0.00	0.00	0.00	3.85
537	587	1.463674	AGGGCATTTCCGATGTTGAC	58.536	50.000	0.00	0.00	34.94	3.18
538	588	3.013921	GTTAGGGCATTTCCGATGTTGA	58.986	45.455	0.00	0.00	34.94	3.18
539	589	3.016736	AGTTAGGGCATTTCCGATGTTG	58.983	45.455	0.00	0.00	34.94	3.33
540	590	3.366052	AGTTAGGGCATTTCCGATGTT	57.634	42.857	0.00	0.00	34.94	2.71
541	591	3.366052	AAGTTAGGGCATTTCCGATGT	57.634	42.857	0.00	0.00	34.94	3.06
542	592	3.694072	TCAAAGTTAGGGCATTTCCGATG	59.306	43.478	0.00	0.00	34.94	3.84
543	593	3.947834	CTCAAAGTTAGGGCATTTCCGAT	59.052	43.478	0.00	0.00	34.94	4.18
544	594	3.343617	CTCAAAGTTAGGGCATTTCCGA	58.656	45.455	0.00	0.00	34.94	4.55
545	595	2.423538	CCTCAAAGTTAGGGCATTTCCG	59.576	50.000	0.00	0.00	34.94	4.30
546	596	3.431415	ACCTCAAAGTTAGGGCATTTCC	58.569	45.455	0.00	0.00	38.54	3.13
547	597	7.875327	TTATACCTCAAAGTTAGGGCATTTC	57.125	36.000	0.00	0.00	38.54	2.17
548	598	8.838649	AATTATACCTCAAAGTTAGGGCATTT	57.161	30.769	0.00	0.00	38.54	2.32
549	599	8.838649	AAATTATACCTCAAAGTTAGGGCATT	57.161	30.769	0.00	0.00	38.54	3.56
566	616	7.530010	CCATTGATCGGTGGATGAAATTATAC	58.470	38.462	9.93	0.00	37.72	1.47
571	621	2.624838	GCCATTGATCGGTGGATGAAAT	59.375	45.455	17.67	0.00	37.72	2.17
574	624	0.179020	GGCCATTGATCGGTGGATGA	60.179	55.000	17.67	0.00	37.72	2.92
581	631	1.532868	GATTCGAAGGCCATTGATCGG	59.467	52.381	5.01	0.00	36.05	4.18
676	726	4.541973	ACAAAAGGAGAAATGGAATGGC	57.458	40.909	0.00	0.00	0.00	4.40
723	773	0.530744	TCTACGTGCATGGAGTGTCC	59.469	55.000	17.86	0.00	36.96	4.02
755	813	4.703379	ATACTACTACTAGACAGGCCGT	57.297	45.455	0.00	0.00	0.00	5.68
765	823	8.082852	GCATCTGCTAAGCAAATACTACTACTA	58.917	37.037	0.00	0.00	38.41	1.82
766	824	6.926272	GCATCTGCTAAGCAAATACTACTACT	59.074	38.462	0.00	0.00	38.41	2.57
767	825	6.146347	GGCATCTGCTAAGCAAATACTACTAC	59.854	42.308	1.70	0.00	38.41	2.73
918	991	1.405821	GCGAGGAGTAGAAGCTAAGCA	59.594	52.381	0.00	0.00	0.00	3.91
952	1025	1.006519	TGACAGAGGAGGAGAGAAGGG	59.993	57.143	0.00	0.00	0.00	3.95
1012	1085	1.916777	GTGGTTTCTCCCCCTCCGA	60.917	63.158	0.00	0.00	34.77	4.55
1045	1118	1.326213	ATCACCTCCTCCTCGTGCTG	61.326	60.000	0.00	0.00	0.00	4.41
1450	1523	3.060615	CTCGTCGTTCTCCCCGGT	61.061	66.667	0.00	0.00	0.00	5.28
1673	1746	5.526010	AACGTTAAACATACTGCTGCTAC	57.474	39.130	0.00	0.00	0.00	3.58
1677	1791	9.607285	AATTAAGAAACGTTAAACATACTGCTG	57.393	29.630	0.00	0.00	0.00	4.41
1692	1806	3.759618	TGTGGGCCCTTAATTAAGAAACG	59.240	43.478	25.70	9.04	35.33	3.60
1709	1823	1.601759	CAACTGGCCTCACTGTGGG	60.602	63.158	3.32	3.91	0.00	4.61
1714	1828	2.656947	TAAAAGCAACTGGCCTCACT	57.343	45.000	3.32	0.00	46.50	3.41
1717	1831	3.942130	ACATTAAAAGCAACTGGCCTC	57.058	42.857	3.32	0.00	46.50	4.70
1752	1915	9.587772	CTACTATAAGTAAGAAACACTGCACAT	57.412	33.333	0.00	0.00	29.00	3.21
1776	1939	9.731819	CGAGAGTAAGAAACATTAAGCATACTA	57.268	33.333	0.00	0.00	0.00	1.82
1777	1940	7.707035	CCGAGAGTAAGAAACATTAAGCATACT	59.293	37.037	0.00	0.00	0.00	2.12
1778	1941	7.491696	ACCGAGAGTAAGAAACATTAAGCATAC	59.508	37.037	0.00	0.00	0.00	2.39
1779	1942	7.491372	CACCGAGAGTAAGAAACATTAAGCATA	59.509	37.037	0.00	0.00	0.00	3.14
1780	1943	6.313905	CACCGAGAGTAAGAAACATTAAGCAT	59.686	38.462	0.00	0.00	0.00	3.79
1781	1944	5.637810	CACCGAGAGTAAGAAACATTAAGCA	59.362	40.000	0.00	0.00	0.00	3.91
1782	1945	5.638234	ACACCGAGAGTAAGAAACATTAAGC	59.362	40.000	0.00	0.00	0.00	3.09
1783	1946	6.401153	GCACACCGAGAGTAAGAAACATTAAG	60.401	42.308	0.00	0.00	0.00	1.85
1784	1947	5.407387	GCACACCGAGAGTAAGAAACATTAA	59.593	40.000	0.00	0.00	0.00	1.40
1785	1948	4.927425	GCACACCGAGAGTAAGAAACATTA	59.073	41.667	0.00	0.00	0.00	1.90
1786	1949	3.746492	GCACACCGAGAGTAAGAAACATT	59.254	43.478	0.00	0.00	0.00	2.71
1787	1950	3.244078	TGCACACCGAGAGTAAGAAACAT	60.244	43.478	0.00	0.00	0.00	2.71
1788	1951	2.101750	TGCACACCGAGAGTAAGAAACA	59.898	45.455	0.00	0.00	0.00	2.83
1789	1952	2.750948	TGCACACCGAGAGTAAGAAAC	58.249	47.619	0.00	0.00	0.00	2.78
1790	1953	3.325870	CATGCACACCGAGAGTAAGAAA	58.674	45.455	0.00	0.00	0.00	2.52
1791	1954	2.353704	CCATGCACACCGAGAGTAAGAA	60.354	50.000	0.00	0.00	0.00	2.52
1792	1955	1.204704	CCATGCACACCGAGAGTAAGA	59.795	52.381	0.00	0.00	0.00	2.10
1793	1956	1.645034	CCATGCACACCGAGAGTAAG	58.355	55.000	0.00	0.00	0.00	2.34
1794	1957	0.391130	GCCATGCACACCGAGAGTAA	60.391	55.000	0.00	0.00	0.00	2.24
1795	1958	1.218047	GCCATGCACACCGAGAGTA	59.782	57.895	0.00	0.00	0.00	2.59
1796	1959	2.046892	GCCATGCACACCGAGAGT	60.047	61.111	0.00	0.00	0.00	3.24
1797	1960	2.104859	CAGCCATGCACACCGAGAG	61.105	63.158	0.00	0.00	0.00	3.20
1798	1961	2.046988	CAGCCATGCACACCGAGA	60.047	61.111	0.00	0.00	0.00	4.04
1809	1972	2.677524	AACCACGCATGCAGCCAT	60.678	55.556	19.57	0.00	41.38	4.40
1810	1973	3.364441	GAACCACGCATGCAGCCA	61.364	61.111	19.57	0.00	41.38	4.75
1811	1974	4.465512	CGAACCACGCATGCAGCC	62.466	66.667	19.57	0.00	41.38	4.85
1820	1983	1.850441	CTATAAACGGAGCGAACCACG	59.150	52.381	0.00	0.00	45.66	4.94
1821	1984	3.114065	CTCTATAAACGGAGCGAACCAC	58.886	50.000	0.00	0.00	0.00	4.16
1822	1985	2.756760	ACTCTATAAACGGAGCGAACCA	59.243	45.455	0.00	0.00	33.29	3.67
1823	1986	3.433513	ACTCTATAAACGGAGCGAACC	57.566	47.619	0.00	0.00	33.29	3.62
1824	1987	5.167218	AGTACTCTATAAACGGAGCGAAC	57.833	43.478	0.00	0.00	33.29	3.95
1825	1988	5.824904	AAGTACTCTATAAACGGAGCGAA	57.175	39.130	0.00	0.00	33.29	4.70
1826	1989	6.316140	TGTTAAGTACTCTATAAACGGAGCGA	59.684	38.462	0.00	0.00	33.29	4.93
1827	1990	6.489675	TGTTAAGTACTCTATAAACGGAGCG	58.510	40.000	0.00	0.00	33.29	5.03
1828	1991	8.351461	AGATGTTAAGTACTCTATAAACGGAGC	58.649	37.037	0.00	0.00	33.29	4.70
1829	1992	9.881529	GAGATGTTAAGTACTCTATAAACGGAG	57.118	37.037	0.00	0.00	35.86	4.63
1830	1993	8.844244	GGAGATGTTAAGTACTCTATAAACGGA	58.156	37.037	0.00	0.00	0.00	4.69
1831	1994	8.627403	TGGAGATGTTAAGTACTCTATAAACGG	58.373	37.037	0.00	0.00	0.00	4.44
1836	1999	9.132923	CCTGTTGGAGATGTTAAGTACTCTATA	57.867	37.037	0.00	0.00	34.57	1.31
1837	2000	7.418025	GCCTGTTGGAGATGTTAAGTACTCTAT	60.418	40.741	0.00	0.00	34.57	1.98
1838	2001	6.127423	GCCTGTTGGAGATGTTAAGTACTCTA	60.127	42.308	0.00	0.00	34.57	2.43
1839	2002	5.337652	GCCTGTTGGAGATGTTAAGTACTCT	60.338	44.000	0.00	0.00	34.57	3.24
1840	2003	4.870991	GCCTGTTGGAGATGTTAAGTACTC	59.129	45.833	0.00	0.00	34.57	2.59
1841	2004	4.620803	CGCCTGTTGGAGATGTTAAGTACT	60.621	45.833	0.00	0.00	34.95	2.73
1842	2005	3.617263	CGCCTGTTGGAGATGTTAAGTAC	59.383	47.826	0.00	0.00	34.95	2.73
1843	2006	3.857052	CGCCTGTTGGAGATGTTAAGTA	58.143	45.455	0.00	0.00	34.95	2.24
1844	2007	2.699954	CGCCTGTTGGAGATGTTAAGT	58.300	47.619	0.00	0.00	34.95	2.24
1845	2008	1.398390	GCGCCTGTTGGAGATGTTAAG	59.602	52.381	0.00	0.00	34.95	1.85
1846	2009	1.448985	GCGCCTGTTGGAGATGTTAA	58.551	50.000	0.00	0.00	34.95	2.01
1847	2010	0.392461	GGCGCCTGTTGGAGATGTTA	60.392	55.000	22.15	0.00	34.95	2.41
1848	2011	1.675641	GGCGCCTGTTGGAGATGTT	60.676	57.895	22.15	0.00	34.95	2.71
1849	2012	2.045926	GGCGCCTGTTGGAGATGT	60.046	61.111	22.15	0.00	34.95	3.06
1901	2064	2.479049	GCGTCTAACTAAGCGATGGACA	60.479	50.000	0.00	0.00	0.00	4.02
1938	2101	1.511318	TTTTAGCGCGGCTGCTGAAA	61.511	50.000	22.33	22.33	46.70	2.69
1940	2103	1.745115	ATTTTAGCGCGGCTGCTGA	60.745	52.632	22.96	15.42	46.70	4.26
1972	2139	1.226802	TTTTTGCGCGCTGCTGAAA	60.227	47.368	33.29	20.53	46.63	2.69
2095	2265	6.892310	ACTTTTCTTCATCAACTTGTTTGC	57.108	33.333	0.00	0.00	34.88	3.68
2146	2316	5.129634	TGAACTTGCTTGGATGAACTTGTA	58.870	37.500	0.00	0.00	0.00	2.41
2161	2331	6.051646	ACTTGATTTGCATTTTGAACTTGC	57.948	33.333	0.00	0.00	36.91	4.01
2258	2441	3.578282	GGAGAGGGAGGAAGATTCATCTC	59.422	52.174	7.13	3.26	38.69	2.75
2580	2770	2.763627	AAAAACAAGGCGGCGATGGC	62.764	55.000	12.98	0.00	38.90	4.40
2581	2771	0.732538	GAAAAACAAGGCGGCGATGG	60.733	55.000	12.98	0.00	0.00	3.51
2583	2773	0.958822	AAGAAAAACAAGGCGGCGAT	59.041	45.000	12.98	0.00	0.00	4.58
2584	2774	0.309612	GAAGAAAAACAAGGCGGCGA	59.690	50.000	12.98	0.00	0.00	5.54
2697	2889	2.511600	GTTGCGGATGACCTCGGG	60.512	66.667	0.00	0.00	0.00	5.14
3114	3360	7.959109	CGTTAGCAAAATTTTGGTACTACTACC	59.041	37.037	31.98	16.07	46.87	3.18
3115	3361	8.711457	TCGTTAGCAAAATTTTGGTACTACTAC	58.289	33.333	31.98	26.05	46.87	2.73
3116	3362	8.711457	GTCGTTAGCAAAATTTTGGTACTACTA	58.289	33.333	31.98	21.26	46.87	1.82
3117	3363	7.227116	TGTCGTTAGCAAAATTTTGGTACTACT	59.773	33.333	31.98	20.94	46.87	2.57
3118	3364	7.354257	TGTCGTTAGCAAAATTTTGGTACTAC	58.646	34.615	31.98	27.10	46.87	2.73
3119	3365	7.493743	TGTCGTTAGCAAAATTTTGGTACTA	57.506	32.000	31.98	20.89	46.87	1.82
3120	3366	6.380095	TGTCGTTAGCAAAATTTTGGTACT	57.620	33.333	31.98	22.07	46.87	2.73
3121	3367	7.631915	AATGTCGTTAGCAAAATTTTGGTAC	57.368	32.000	31.98	25.48	46.87	3.34
3140	3389	4.089923	GCAAGTTTTACCATCGCAAATGTC	59.910	41.667	0.00	0.00	0.00	3.06
3142	3391	3.367630	GGCAAGTTTTACCATCGCAAATG	59.632	43.478	0.00	0.00	0.00	2.32
3154	3404	9.660180	AAAGTTGTTATTTTCTGGCAAGTTTTA	57.340	25.926	0.00	0.00	38.66	1.52
3188	3439	7.962441	ACTAAGTACCAAATTCTTTTGCCAAT	58.038	30.769	0.00	0.00	40.77	3.16
3191	3442	8.957466	AGATACTAAGTACCAAATTCTTTTGCC	58.043	33.333	0.00	0.00	40.77	4.52
3218	3469	9.953565	TGTAAAATACTGGCTAGTAACTGATTT	57.046	29.630	14.40	7.93	42.37	2.17
3221	3472	8.755028	TGATGTAAAATACTGGCTAGTAACTGA	58.245	33.333	14.40	0.00	42.37	3.41
3223	3474	9.601217	CTTGATGTAAAATACTGGCTAGTAACT	57.399	33.333	14.40	1.78	42.37	2.24
3224	3475	8.336080	GCTTGATGTAAAATACTGGCTAGTAAC	58.664	37.037	14.40	8.29	42.37	2.50
3225	3476	7.497909	GGCTTGATGTAAAATACTGGCTAGTAA	59.502	37.037	14.40	0.00	42.37	2.24
3238	3498	2.094078	GCAGGCATGGCTTGATGTAAAA	60.094	45.455	20.85	0.00	37.87	1.52
3240	3500	1.105457	GCAGGCATGGCTTGATGTAA	58.895	50.000	20.85	0.00	37.87	2.41
3241	3501	0.256752	AGCAGGCATGGCTTGATGTA	59.743	50.000	20.85	0.00	38.81	2.29
3242	3502	1.000019	AGCAGGCATGGCTTGATGT	60.000	52.632	20.85	0.00	38.81	3.06
3243	3503	1.437573	CAGCAGGCATGGCTTGATG	59.562	57.895	20.85	18.78	44.45	3.07
3286	3599	1.065928	GTCGCCCTATGACTCGTGG	59.934	63.158	0.00	0.00	33.54	4.94
3301	3614	1.134530	CGCCAACTTAGAGCTCGTCG	61.135	60.000	8.37	2.83	0.00	5.12
3303	3616	1.446272	GCGCCAACTTAGAGCTCGT	60.446	57.895	8.37	0.00	0.00	4.18
3353	3680	1.094785	CCCCTACATGCAAAACGGAG	58.905	55.000	0.00	0.00	0.00	4.63
3354	3681	0.402504	ACCCCTACATGCAAAACGGA	59.597	50.000	0.00	0.00	0.00	4.69
3355	3682	1.067915	CAACCCCTACATGCAAAACGG	60.068	52.381	0.00	0.00	0.00	4.44
3356	3683	1.883275	TCAACCCCTACATGCAAAACG	59.117	47.619	0.00	0.00	0.00	3.60
3357	3684	2.352715	GCTCAACCCCTACATGCAAAAC	60.353	50.000	0.00	0.00	0.00	2.43
3371	3698	3.488090	GCGCGGTACAGCTCAACC	61.488	66.667	16.02	4.19	34.40	3.77
3399	3726	2.125673	ATTCGGAGCCGTCCAACG	60.126	61.111	8.96	0.00	44.18	4.10
3400	3727	0.462047	ATCATTCGGAGCCGTCCAAC	60.462	55.000	8.96	0.00	44.18	3.77
3401	3728	0.179084	GATCATTCGGAGCCGTCCAA	60.179	55.000	8.96	0.00	44.18	3.53
3443	3774	3.944015	AGAGCAGAAATAAGACCATGCAC	59.056	43.478	0.00	0.00	36.15	4.57
3444	3775	4.226427	AGAGCAGAAATAAGACCATGCA	57.774	40.909	0.00	0.00	36.15	3.96
3445	3776	6.874288	AATAGAGCAGAAATAAGACCATGC	57.126	37.500	0.00	0.00	0.00	4.06
3446	3777	8.680903	ACAAAATAGAGCAGAAATAAGACCATG	58.319	33.333	0.00	0.00	0.00	3.66
3447	3778	8.814038	ACAAAATAGAGCAGAAATAAGACCAT	57.186	30.769	0.00	0.00	0.00	3.55
3448	3779	7.882791	TGACAAAATAGAGCAGAAATAAGACCA	59.117	33.333	0.00	0.00	0.00	4.02
3449	3780	8.268850	TGACAAAATAGAGCAGAAATAAGACC	57.731	34.615	0.00	0.00	0.00	3.85
3450	3781	9.766277	CTTGACAAAATAGAGCAGAAATAAGAC	57.234	33.333	0.00	0.00	0.00	3.01
3516	3847	1.375326	GGCCTCGACTTCTTGGGTT	59.625	57.895	0.00	0.00	0.00	4.11
3523	3854	4.225497	CCCATTGGCCTCGACTTC	57.775	61.111	3.32	0.00	0.00	3.01
3677	4013	4.941263	ACTTTGGTTAGCTTCGCATATCAA	59.059	37.500	0.00	0.00	0.00	2.57
3716	4088	4.744570	TGCTTCTTATACAGGAACGTCTG	58.255	43.478	2.88	2.88	40.40	3.51
3751	4130	8.804743	ACTAGTTCACGTAATAATCAATCAACG	58.195	33.333	0.00	0.00	34.63	4.10
3790	4172	1.079127	GAGGCTGGTTGCTTCGCTA	60.079	57.895	0.00	0.00	38.01	4.26
3894	4284	4.569943	GAGTGAGCACATTCTAAAGACCA	58.430	43.478	3.19	0.00	31.48	4.02
3932	4323	3.314693	AGGCCGACCCAAGATTAAGATA	58.685	45.455	0.00	0.00	36.11	1.98
3961	4352	1.517538	ATGGCCCCTCAACCCATTGA	61.518	55.000	0.00	0.00	42.73	2.57
3997	4389	3.083997	GAGGCCATGGGTCGACCT	61.084	66.667	32.52	12.83	41.11	3.85
4077	4470	5.890424	AAATACTACGTTCAACCCATTGG	57.110	39.130	0.00	0.00	36.39	3.16
4078	4471	6.674066	ACAAAATACTACGTTCAACCCATTG	58.326	36.000	0.00	0.00	37.14	2.82
4079	4472	6.887626	ACAAAATACTACGTTCAACCCATT	57.112	33.333	0.00	0.00	0.00	3.16
4080	4473	6.091169	CGTACAAAATACTACGTTCAACCCAT	59.909	38.462	0.00	0.00	32.76	4.00
4081	4474	5.404968	CGTACAAAATACTACGTTCAACCCA	59.595	40.000	0.00	0.00	32.76	4.51
4082	4475	5.405269	ACGTACAAAATACTACGTTCAACCC	59.595	40.000	0.00	0.00	45.05	4.11
4083	4476	6.452244	ACGTACAAAATACTACGTTCAACC	57.548	37.500	0.00	0.00	45.05	3.77
4084	4477	7.149192	ACGTACGTACAAAATACTACGTTCAAC	60.149	37.037	21.41	1.13	45.05	3.18
4085	4478	6.853872	ACGTACGTACAAAATACTACGTTCAA	59.146	34.615	21.41	0.00	45.05	2.69
4086	4479	6.367421	ACGTACGTACAAAATACTACGTTCA	58.633	36.000	21.41	0.00	45.05	3.18
4087	4480	6.518395	TGACGTACGTACAAAATACTACGTTC	59.482	38.462	22.87	2.82	45.05	3.95
4088	4481	6.302313	GTGACGTACGTACAAAATACTACGTT	59.698	38.462	22.87	1.52	45.05	3.99
4090	4483	6.217947	GTGACGTACGTACAAAATACTACG	57.782	41.667	22.87	12.07	41.24	3.51
4105	4498	1.081892	TCTGCTAGGTCGTGACGTAC	58.918	55.000	4.40	1.85	0.00	3.67
4138	4531	2.100252	ACGGTTCAGAAGTTCAGAACGA	59.900	45.455	25.73	5.33	41.84	3.85
4143	4536	2.135664	ACGACGGTTCAGAAGTTCAG	57.864	50.000	5.50	0.00	0.00	3.02
4156	4549	2.380410	GCAGTGGTAGCAACGACGG	61.380	63.158	0.00	0.00	39.16	4.79
4214	4644	6.567701	CCAAACTGTTGCGATGTTAACTACAT	60.568	38.462	7.22	0.00	40.63	2.29
4215	4645	5.277586	CCAAACTGTTGCGATGTTAACTACA	60.278	40.000	7.22	0.00	35.80	2.74
4216	4646	5.144359	CCAAACTGTTGCGATGTTAACTAC	58.856	41.667	7.22	0.18	33.01	2.73
4217	4647	4.817464	ACCAAACTGTTGCGATGTTAACTA	59.183	37.500	7.22	0.00	33.01	2.24
4218	4648	3.630312	ACCAAACTGTTGCGATGTTAACT	59.370	39.130	7.22	0.00	33.01	2.24
4219	4649	3.959943	ACCAAACTGTTGCGATGTTAAC	58.040	40.909	0.00	0.00	33.01	2.01
4220	4650	3.628032	TGACCAAACTGTTGCGATGTTAA	59.372	39.130	0.00	0.00	33.01	2.01
4221	4651	3.206964	TGACCAAACTGTTGCGATGTTA	58.793	40.909	0.00	0.00	33.01	2.41
4223	4653	1.603802	CTGACCAAACTGTTGCGATGT	59.396	47.619	0.00	0.00	33.01	3.06
4227	4657	0.732571	ACACTGACCAAACTGTTGCG	59.267	50.000	0.00	0.00	33.01	4.85
4271	4701	6.072673	TGTCGCCTTCTTTCTTAGAAAAATCC	60.073	38.462	8.82	0.00	42.19	3.01
4273	4703	6.486993	AGTGTCGCCTTCTTTCTTAGAAAAAT	59.513	34.615	8.82	0.00	42.19	1.82
4334	4769	1.638388	CTACGTGCATGCAGTGTGGG	61.638	60.000	27.33	18.51	0.00	4.61
4336	4771	0.717784	CTCTACGTGCATGCAGTGTG	59.282	55.000	27.33	17.94	0.00	3.82
4362	4797	2.197324	CGGAGGGAGGAGCTAGCT	59.803	66.667	19.45	19.45	0.00	3.32
4363	4798	1.740332	GAACGGAGGGAGGAGCTAGC	61.740	65.000	6.62	6.62	0.00	3.42
4364	4799	1.110518	GGAACGGAGGGAGGAGCTAG	61.111	65.000	0.00	0.00	0.00	3.42
4365	4800	1.076192	GGAACGGAGGGAGGAGCTA	60.076	63.158	0.00	0.00	0.00	3.32
4366	4801	1.581923	TAGGAACGGAGGGAGGAGCT	61.582	60.000	0.00	0.00	0.00	4.09
4367	4802	0.686769	TTAGGAACGGAGGGAGGAGC	60.687	60.000	0.00	0.00	0.00	4.70
4368	4803	1.861982	TTTAGGAACGGAGGGAGGAG	58.138	55.000	0.00	0.00	0.00	3.69
4369	4804	2.563039	ATTTAGGAACGGAGGGAGGA	57.437	50.000	0.00	0.00	0.00	3.71
4370	4805	4.976540	AATATTTAGGAACGGAGGGAGG	57.023	45.455	0.00	0.00	0.00	4.30
4371	4806	5.681639	ACAAATATTTAGGAACGGAGGGAG	58.318	41.667	0.00	0.00	0.00	4.30
4372	4807	5.427481	AGACAAATATTTAGGAACGGAGGGA	59.573	40.000	0.00	0.00	0.00	4.20
4373	4808	5.681639	AGACAAATATTTAGGAACGGAGGG	58.318	41.667	0.00	0.00	0.00	4.30
4374	4809	7.553044	AGAAAGACAAATATTTAGGAACGGAGG	59.447	37.037	0.00	0.00	0.00	4.30
4375	4810	8.494016	AGAAAGACAAATATTTAGGAACGGAG	57.506	34.615	0.00	0.00	0.00	4.63
4376	4811	9.595823	CTAGAAAGACAAATATTTAGGAACGGA	57.404	33.333	0.00	0.00	0.00	4.69
4377	4812	9.595823	TCTAGAAAGACAAATATTTAGGAACGG	57.404	33.333	0.00	0.00	0.00	4.44
4389	4824	9.354673	TCATTTGAAACCTCTAGAAAGACAAAT	57.645	29.630	13.64	13.64	36.38	2.32
4390	4825	8.746052	TCATTTGAAACCTCTAGAAAGACAAA	57.254	30.769	0.00	4.41	0.00	2.83
4391	4826	8.786898	CATCATTTGAAACCTCTAGAAAGACAA	58.213	33.333	0.00	0.00	0.00	3.18
4392	4827	8.156820	TCATCATTTGAAACCTCTAGAAAGACA	58.843	33.333	0.00	0.00	0.00	3.41
4393	4828	8.447053	GTCATCATTTGAAACCTCTAGAAAGAC	58.553	37.037	0.00	0.00	35.70	3.01
4394	4829	8.378565	AGTCATCATTTGAAACCTCTAGAAAGA	58.621	33.333	0.00	0.00	35.70	2.52
4395	4830	8.558973	AGTCATCATTTGAAACCTCTAGAAAG	57.441	34.615	0.00	0.00	35.70	2.62
4396	4831	9.436957	GTAGTCATCATTTGAAACCTCTAGAAA	57.563	33.333	0.00	0.00	35.70	2.52
4397	4832	8.593679	TGTAGTCATCATTTGAAACCTCTAGAA	58.406	33.333	0.00	0.00	35.70	2.10
4398	4833	8.134202	TGTAGTCATCATTTGAAACCTCTAGA	57.866	34.615	0.00	0.00	35.70	2.43
4399	4834	8.954950	ATGTAGTCATCATTTGAAACCTCTAG	57.045	34.615	0.00	0.00	35.70	2.43
4400	4835	9.817809	GTATGTAGTCATCATTTGAAACCTCTA	57.182	33.333	0.00	0.00	35.70	2.43
4401	4836	7.492669	CGTATGTAGTCATCATTTGAAACCTCT	59.507	37.037	0.00	0.00	35.70	3.69
4402	4837	7.254455	CCGTATGTAGTCATCATTTGAAACCTC	60.254	40.741	0.00	0.00	35.70	3.85
4403	4838	6.538742	CCGTATGTAGTCATCATTTGAAACCT	59.461	38.462	0.00	0.00	35.70	3.50
4404	4839	6.537301	TCCGTATGTAGTCATCATTTGAAACC	59.463	38.462	0.00	0.00	35.70	3.27
4405	4840	7.534085	TCCGTATGTAGTCATCATTTGAAAC	57.466	36.000	0.00	0.00	35.70	2.78
4406	4841	7.604545	TGTTCCGTATGTAGTCATCATTTGAAA	59.395	33.333	0.00	0.00	35.70	2.69
4407	4842	7.100409	TGTTCCGTATGTAGTCATCATTTGAA	58.900	34.615	0.00	0.00	35.70	2.69
4408	4843	6.635755	TGTTCCGTATGTAGTCATCATTTGA	58.364	36.000	0.00	0.00	35.70	2.69
4409	4844	6.902224	TGTTCCGTATGTAGTCATCATTTG	57.098	37.500	0.00	0.00	35.70	2.32
4410	4845	7.915293	TTTGTTCCGTATGTAGTCATCATTT	57.085	32.000	0.00	0.00	35.70	2.32
4411	4846	7.915293	TTTTGTTCCGTATGTAGTCATCATT	57.085	32.000	0.00	0.00	35.70	2.57
4412	4847	7.768582	TCATTTTGTTCCGTATGTAGTCATCAT	59.231	33.333	0.00	0.00	35.70	2.45
4413	4848	7.100409	TCATTTTGTTCCGTATGTAGTCATCA	58.900	34.615	0.00	0.00	35.70	3.07
4414	4849	7.277981	ACTCATTTTGTTCCGTATGTAGTCATC	59.722	37.037	0.00	0.00	35.70	2.92
4415	4850	7.064609	CACTCATTTTGTTCCGTATGTAGTCAT	59.935	37.037	0.00	0.00	38.00	3.06
4416	4851	6.367695	CACTCATTTTGTTCCGTATGTAGTCA	59.632	38.462	0.00	0.00	0.00	3.41
4417	4852	6.588756	TCACTCATTTTGTTCCGTATGTAGTC	59.411	38.462	0.00	0.00	0.00	2.59
4418	4853	6.460781	TCACTCATTTTGTTCCGTATGTAGT	58.539	36.000	0.00	0.00	0.00	2.73
4419	4854	6.961359	TCACTCATTTTGTTCCGTATGTAG	57.039	37.500	0.00	0.00	0.00	2.74
4420	4855	7.822334	AGATTCACTCATTTTGTTCCGTATGTA	59.178	33.333	0.00	0.00	0.00	2.29
4421	4856	6.655003	AGATTCACTCATTTTGTTCCGTATGT	59.345	34.615	0.00	0.00	0.00	2.29
4422	4857	7.076842	AGATTCACTCATTTTGTTCCGTATG	57.923	36.000	0.00	0.00	0.00	2.39
4423	4858	7.822334	TGTAGATTCACTCATTTTGTTCCGTAT	59.178	33.333	0.00	0.00	0.00	3.06
4424	4859	7.117236	GTGTAGATTCACTCATTTTGTTCCGTA	59.883	37.037	0.00	0.00	35.68	4.02
4425	4860	5.995282	TGTAGATTCACTCATTTTGTTCCGT	59.005	36.000	0.00	0.00	0.00	4.69
4426	4861	6.147821	AGTGTAGATTCACTCATTTTGTTCCG	59.852	38.462	0.00	0.00	44.07	4.30
4427	4862	7.440523	AGTGTAGATTCACTCATTTTGTTCC	57.559	36.000	0.00	0.00	44.07	3.62
4474	4909	7.067859	AGAGATTTCAAATGGTCACCACATATG	59.932	37.037	0.00	0.00	35.80	1.78
4475	4910	7.121382	AGAGATTTCAAATGGTCACCACATAT	58.879	34.615	0.00	0.00	35.80	1.78
4476	4911	6.484288	AGAGATTTCAAATGGTCACCACATA	58.516	36.000	0.00	0.00	35.80	2.29
4477	4912	5.327732	AGAGATTTCAAATGGTCACCACAT	58.672	37.500	0.00	0.00	35.80	3.21
4478	4913	4.728772	AGAGATTTCAAATGGTCACCACA	58.271	39.130	0.00	0.00	35.80	4.17
4479	4914	6.173339	TCTAGAGATTTCAAATGGTCACCAC	58.827	40.000	0.00	0.00	35.80	4.16
4480	4915	6.373005	TCTAGAGATTTCAAATGGTCACCA	57.627	37.500	0.00	0.00	38.19	4.17
4481	4916	7.607991	TCTTTCTAGAGATTTCAAATGGTCACC	59.392	37.037	0.00	0.00	0.00	4.02
4482	4917	8.447053	GTCTTTCTAGAGATTTCAAATGGTCAC	58.553	37.037	0.00	0.00	0.00	3.67
4483	4918	8.156820	TGTCTTTCTAGAGATTTCAAATGGTCA	58.843	33.333	0.00	0.00	0.00	4.02
4484	4919	8.553459	TGTCTTTCTAGAGATTTCAAATGGTC	57.447	34.615	0.00	0.00	0.00	4.02
4485	4920	8.924511	TTGTCTTTCTAGAGATTTCAAATGGT	57.075	30.769	0.00	0.00	0.00	3.55
4498	4933	9.595823	CCGTTCCTAAATATTTGTCTTTCTAGA	57.404	33.333	11.05	0.00	0.00	2.43
4499	4934	9.595823	TCCGTTCCTAAATATTTGTCTTTCTAG	57.404	33.333	11.05	0.00	0.00	2.43
4500	4935	9.595823	CTCCGTTCCTAAATATTTGTCTTTCTA	57.404	33.333	11.05	0.00	0.00	2.10
4501	4936	7.553044	CCTCCGTTCCTAAATATTTGTCTTTCT	59.447	37.037	11.05	0.00	0.00	2.52
4502	4937	7.201705	CCCTCCGTTCCTAAATATTTGTCTTTC	60.202	40.741	11.05	0.00	0.00	2.62
4503	4938	6.602009	CCCTCCGTTCCTAAATATTTGTCTTT	59.398	38.462	11.05	0.00	0.00	2.52
4504	4939	6.069847	TCCCTCCGTTCCTAAATATTTGTCTT	60.070	38.462	11.05	0.00	0.00	3.01
4505	4940	5.427481	TCCCTCCGTTCCTAAATATTTGTCT	59.573	40.000	11.05	0.00	0.00	3.41
4506	4941	5.677567	TCCCTCCGTTCCTAAATATTTGTC	58.322	41.667	11.05	0.00	0.00	3.18
4507	4942	5.191124	ACTCCCTCCGTTCCTAAATATTTGT	59.809	40.000	11.05	0.00	0.00	2.83
4508	4943	5.681639	ACTCCCTCCGTTCCTAAATATTTG	58.318	41.667	11.05	1.40	0.00	2.32
4509	4944	5.970501	ACTCCCTCCGTTCCTAAATATTT	57.029	39.130	5.89	5.89	0.00	1.40
4510	4945	7.628501	ATTACTCCCTCCGTTCCTAAATATT	57.371	36.000	0.00	0.00	0.00	1.28
4511	4946	8.912614	ATATTACTCCCTCCGTTCCTAAATAT	57.087	34.615	0.00	0.00	0.00	1.28
4513	4948	8.912614	ATATATTACTCCCTCCGTTCCTAAAT	57.087	34.615	0.00	0.00	0.00	1.40
4514	4949	8.591072	CAATATATTACTCCCTCCGTTCCTAAA	58.409	37.037	0.00	0.00	0.00	1.85
4515	4950	7.731688	ACAATATATTACTCCCTCCGTTCCTAA	59.268	37.037	0.00	0.00	0.00	2.69
4516	4951	7.243824	ACAATATATTACTCCCTCCGTTCCTA	58.756	38.462	0.00	0.00	0.00	2.94
4517	4952	6.082707	ACAATATATTACTCCCTCCGTTCCT	58.917	40.000	0.00	0.00	0.00	3.36
4518	4953	6.356186	ACAATATATTACTCCCTCCGTTCC	57.644	41.667	0.00	0.00	0.00	3.62
4519	4954	8.120140	AGTACAATATATTACTCCCTCCGTTC	57.880	38.462	0.00	0.00	0.00	3.95
4520	4955	9.018582	GTAGTACAATATATTACTCCCTCCGTT	57.981	37.037	4.49	0.00	30.97	4.44
4521	4956	7.613411	GGTAGTACAATATATTACTCCCTCCGT	59.387	40.741	2.06	0.00	30.97	4.69
4522	4957	7.067981	GGGTAGTACAATATATTACTCCCTCCG	59.932	44.444	17.91	2.42	35.22	4.63
4523	4958	8.121185	AGGGTAGTACAATATATTACTCCCTCC	58.879	40.741	19.94	12.63	39.41	4.30
4552	4987	5.794894	AGGATCAAACGTCAGAAACTACAT	58.205	37.500	0.00	0.00	0.00	2.29
4553	4988	5.209818	AGGATCAAACGTCAGAAACTACA	57.790	39.130	0.00	0.00	0.00	2.74
4601	5042	1.600663	CGGTCGATCAGGCTATGTGTC	60.601	57.143	0.00	0.00	0.00	3.67
4605	5046	0.891373	ATCCGGTCGATCAGGCTATG	59.109	55.000	0.00	0.00	0.00	2.23
4683	5129	5.009710	TCGTTAATTATCCTGCAGATCGACT	59.990	40.000	17.39	0.00	36.33	4.18
4713	5159	1.070821	CGTGCGTGTGTGAGAATGAT	58.929	50.000	0.00	0.00	0.00	2.45
4737	5183	1.340088	TTAGTGCCTACCAACCGTGA	58.660	50.000	0.00	0.00	0.00	4.35
4738	5184	2.396590	ATTAGTGCCTACCAACCGTG	57.603	50.000	0.00	0.00	0.00	4.94
4739	5185	4.700700	GAATATTAGTGCCTACCAACCGT	58.299	43.478	0.00	0.00	0.00	4.83
4740	5186	3.739300	CGAATATTAGTGCCTACCAACCG	59.261	47.826	0.00	0.00	0.00	4.44
4741	5187	4.062991	CCGAATATTAGTGCCTACCAACC	58.937	47.826	0.00	0.00	0.00	3.77
4744	5190	2.701423	TGCCGAATATTAGTGCCTACCA	59.299	45.455	0.00	0.00	0.00	3.25
4750	5196	1.070577	CGCAGTGCCGAATATTAGTGC	60.071	52.381	10.11	5.90	36.42	4.40
4793	5239	6.154877	TCCTATGTTGCCATTCATCAATTTGT	59.845	34.615	0.00	0.00	32.29	2.83
4853	5644	6.382570	AGACAGGACTTAGTCATCTGCTAATT	59.617	38.462	14.72	0.00	37.23	1.40
4854	5645	5.896678	AGACAGGACTTAGTCATCTGCTAAT	59.103	40.000	14.72	0.00	37.23	1.73
4855	5646	5.265191	AGACAGGACTTAGTCATCTGCTAA	58.735	41.667	14.72	0.00	37.23	3.09
4866	5657	2.088423	AGCGACAGAGACAGGACTTAG	58.912	52.381	0.00	0.00	0.00	2.18
4868	5659	1.333177	AAGCGACAGAGACAGGACTT	58.667	50.000	0.00	0.00	0.00	3.01
4870	5661	4.839668	ATATAAGCGACAGAGACAGGAC	57.160	45.455	0.00	0.00	0.00	3.85
4975	6545	7.681939	AATACAAAAGGCCATATATACACCG	57.318	36.000	5.01	0.00	0.00	4.94
4977	6547	9.073475	TGGAAATACAAAAGGCCATATATACAC	57.927	33.333	5.01	0.00	0.00	2.90
4979	6549	9.297037	ACTGGAAATACAAAAGGCCATATATAC	57.703	33.333	5.01	0.00	0.00	1.47
4980	6550	9.295825	CACTGGAAATACAAAAGGCCATATATA	57.704	33.333	5.01	0.00	0.00	0.86
4981	6551	8.004215	TCACTGGAAATACAAAAGGCCATATAT	58.996	33.333	5.01	0.00	0.00	0.86
5026	6596	3.243704	TGGTCTTTACTGGTTGCAATTGC	60.244	43.478	23.69	23.69	42.50	3.56
5027	6597	4.582701	TGGTCTTTACTGGTTGCAATTG	57.417	40.909	0.59	0.00	0.00	2.32
5028	6598	5.070313	ACAATGGTCTTTACTGGTTGCAATT	59.930	36.000	0.59	0.00	0.00	2.32
5029	6599	4.588528	ACAATGGTCTTTACTGGTTGCAAT	59.411	37.500	0.59	0.00	0.00	3.56
5030	6600	3.957497	ACAATGGTCTTTACTGGTTGCAA	59.043	39.130	0.00	0.00	0.00	4.08
5112	6682	8.293867	GCCACAGTAACAACAAATAGTTAATCA	58.706	33.333	0.00	0.00	38.74	2.57
5113	6683	8.512138	AGCCACAGTAACAACAAATAGTTAATC	58.488	33.333	0.00	0.00	38.74	1.75
5114	6684	8.296713	CAGCCACAGTAACAACAAATAGTTAAT	58.703	33.333	0.00	0.00	38.74	1.40
5324	6911	0.953960	CGTCAACAACAGGGTAGGCC	60.954	60.000	0.00	0.00	0.00	5.19
5336	6923	1.855213	CGTAGGTCCCGACGTCAACA	61.855	60.000	17.16	0.00	39.53	3.33
5348	6935	2.541556	GTCTTGATCTTGGCGTAGGTC	58.458	52.381	0.00	0.00	0.00	3.85
5417	7004	7.967303	GCATTTCAACCTGATTTTCAAACAAAA	59.033	29.630	0.00	0.00	0.00	2.44
5470	7077	4.693283	TCATCGCTTCCATCGACTTTAAT	58.307	39.130	0.00	0.00	38.88	1.40
5478	7085	1.926561	TGAGTTCATCGCTTCCATCG	58.073	50.000	0.00	0.00	0.00	3.84
5479	7086	3.686726	ACTTTGAGTTCATCGCTTCCATC	59.313	43.478	0.00	0.00	0.00	3.51
5488	7095	7.195646	TGTTTGTTGATGACTTTGAGTTCATC	58.804	34.615	4.89	4.89	35.38	2.92
5550	7158	2.027688	GCGTCTAACTATGTTCACGTGC	59.972	50.000	11.67	0.00	0.00	5.34
5569	7177	6.782506	TTTTAATATTTATGTGTGTGCGCG	57.217	33.333	0.00	0.00	0.00	6.86
5634	7242	2.224917	GGTGGACCAAGTTTGATACCCA	60.225	50.000	0.00	0.00	35.64	4.51
5655	7263	1.144969	ATTTCACACGTGCGTACAGG	58.855	50.000	17.22	0.00	37.69	4.00
5729	7540	7.642071	AAACACTGTTTGCATGAATGATAAC	57.358	32.000	6.35	0.00	0.00	1.89
5733	7544	6.104665	TCAAAAACACTGTTTGCATGAATGA	58.895	32.000	7.93	2.91	36.19	2.57
5734	7545	6.347270	TCAAAAACACTGTTTGCATGAATG	57.653	33.333	7.93	0.94	36.19	2.67
5775	7586	9.651913	GGTATTATGAGCAAAAATGAAAGGAAA	57.348	29.630	0.00	0.00	0.00	3.13
5776	7587	8.811017	TGGTATTATGAGCAAAAATGAAAGGAA	58.189	29.630	0.00	0.00	0.00	3.36
5777	7588	8.359875	TGGTATTATGAGCAAAAATGAAAGGA	57.640	30.769	0.00	0.00	0.00	3.36
5778	7589	9.037737	CATGGTATTATGAGCAAAAATGAAAGG	57.962	33.333	0.00	0.00	0.00	3.11
5779	7590	9.806203	TCATGGTATTATGAGCAAAAATGAAAG	57.194	29.630	0.00	0.00	32.39	2.62
5875	7690	5.657470	TCATTACTCTATGAATGCAACGC	57.343	39.130	0.00	0.00	33.82	4.84
5914	7732	6.714492	CATAAACAAGTTATGCATGCGAGTA	58.286	36.000	14.09	3.12	41.98	2.59
5941	7759	4.535781	TGTTTCTAGCCATGCAACCATAT	58.464	39.130	0.00	0.00	0.00	1.78
5996	7814	9.823647	TTCCTAAATATCTGTGTTTTGCAAAAA	57.176	25.926	25.40	10.76	0.00	1.94
5997	7815	9.995003	ATTCCTAAATATCTGTGTTTTGCAAAA	57.005	25.926	20.46	20.46	0.00	2.44
5998	7816	9.995003	AATTCCTAAATATCTGTGTTTTGCAAA	57.005	25.926	8.05	8.05	0.00	3.68
5999	7817	9.421806	CAATTCCTAAATATCTGTGTTTTGCAA	57.578	29.630	0.00	0.00	0.00	4.08
6000	7818	8.801299	TCAATTCCTAAATATCTGTGTTTTGCA	58.199	29.630	0.00	0.00	0.00	4.08
6001	7819	9.638239	TTCAATTCCTAAATATCTGTGTTTTGC	57.362	29.630	0.00	0.00	0.00	3.68
6076	8204	7.317390	TGTTGACCAGAAAAGTTTTAAGTTCC	58.683	34.615	0.00	0.00	0.00	3.62
6077	8205	8.751302	TTGTTGACCAGAAAAGTTTTAAGTTC	57.249	30.769	0.00	0.00	0.00	3.01
6220	8348	8.919145	AGATGAATAGATAGGAAGTTTTCTCGT	58.081	33.333	0.00	0.00	0.00	4.18
6286	8414	5.696724	GGTGATCTACGGATTTGGATGTAAG	59.303	44.000	0.00	0.00	31.46	2.34
6306	8434	3.057386	TGTTTGTATTCGTCGCTAGGTGA	60.057	43.478	0.00	0.00	0.00	4.02
6352	8480	0.035439	GAGGGAAAGGCAATGACGGA	60.035	55.000	0.00	0.00	0.00	4.69
6364	8492	3.755628	CGGCTCCGACGAGGGAAA	61.756	66.667	1.35	0.00	42.83	3.13
6407	8535	2.309504	GGGGCCTTAGCACTTCCCT	61.310	63.158	0.84	0.00	44.23	4.20
6492	8626	3.311106	GTCTACGTTCATGTGTTTCGGA	58.689	45.455	0.00	0.00	0.00	4.55
6494	8628	2.975193	TCGTCTACGTTCATGTGTTTCG	59.025	45.455	0.00	0.00	40.80	3.46
6526	8661	3.094572	CCTTGGTGGATTTGCTCAGATT	58.905	45.455	0.00	0.00	38.35	2.40
6554	8689	2.741092	GAGGTGTGTCTCCGGCAA	59.259	61.111	0.00	0.00	0.00	4.52
6628	8766	4.949856	GTGGCTTCCTGAAGATGGAATAAA	59.050	41.667	11.00	0.00	42.03	1.40
6706	8845	1.873591	ACGTGATGGCTCTGTTTTCAC	59.126	47.619	0.00	0.00	34.70	3.18
6852	8992	7.893236	CGTATAGAAAAGATTTCAGTTGACACG	59.107	37.037	5.71	0.00	0.00	4.49
6853	8993	7.688578	GCGTATAGAAAAGATTTCAGTTGACAC	59.311	37.037	5.71	0.00	0.00	3.67
6854	8994	7.411480	CGCGTATAGAAAAGATTTCAGTTGACA	60.411	37.037	0.00	0.00	0.00	3.58
6855	8995	6.895040	CGCGTATAGAAAAGATTTCAGTTGAC	59.105	38.462	0.00	0.00	0.00	3.18
6856	8996	6.035650	CCGCGTATAGAAAAGATTTCAGTTGA	59.964	38.462	4.92	0.00	0.00	3.18
6857	8997	6.035650	TCCGCGTATAGAAAAGATTTCAGTTG	59.964	38.462	4.92	0.00	0.00	3.16
6878	9018	2.844122	AAACACAACAGAACTTCCGC	57.156	45.000	0.00	0.00	0.00	5.54
6938	9082	9.673454	AACGATATGTAAACTTGAAACTTTTCC	57.327	29.630	0.00	0.00	36.36	3.13
7004	9149	5.133941	CAGGTGTGCCTCTATCTAGAGTTA	58.866	45.833	12.12	0.09	46.52	2.24
7046	9191	5.637810	CGTTCAGCTTGAAGTTAAGATGGTA	59.362	40.000	4.24	0.00	42.63	3.25
7050	9195	4.003648	CCCGTTCAGCTTGAAGTTAAGAT	58.996	43.478	0.00	0.00	37.00	2.40
7234	9379	7.094933	CGTAATAAACTTACCTTGAGCCACTTT	60.095	37.037	0.00	0.00	0.00	2.66
7278	9423	0.549469	ATGAGCTGGATGCATGGACA	59.451	50.000	2.46	0.00	45.94	4.02
7337	9482	2.740055	CTGGTGCAGAGGACGTGC	60.740	66.667	0.00	0.00	41.59	5.34
7339	9484	2.511452	AAGCTGGTGCAGAGGACGT	61.511	57.895	0.00	0.00	42.74	4.34
7416	9588	2.154854	TGCACGAACCTCTTCTCTTG	57.845	50.000	0.00	0.00	0.00	3.02
7485	9663	2.232298	GAGACCAGGAACCGAGCTGG	62.232	65.000	0.00	0.00	46.41	4.85
7522	9702	2.275812	GTACATGAACGCACGCGC	60.276	61.111	12.02	0.00	44.19	6.86
7556	9736	1.785041	TTCAGGCGTGCACTTTCAGC	61.785	55.000	16.19	10.23	0.00	4.26
7610	9791	1.401761	TCCCCACATTGTGCATATGC	58.598	50.000	21.09	21.09	42.50	3.14
7611	9792	3.304861	CGAATCCCCACATTGTGCATATG	60.305	47.826	11.41	9.48	31.34	1.78
7622	9803	4.090588	GCGTCCCGAATCCCCACA	62.091	66.667	0.00	0.00	0.00	4.17
7666	9847	6.872920	ACAAAAGCAAAATACAGAGGTGAAA	58.127	32.000	0.00	0.00	0.00	2.69
7667	9848	6.463995	ACAAAAGCAAAATACAGAGGTGAA	57.536	33.333	0.00	0.00	0.00	3.18
7671	9852	6.974965	AGAGAACAAAAGCAAAATACAGAGG	58.025	36.000	0.00	0.00	0.00	3.69
7678	9859	6.319658	TCACTCTGAGAGAACAAAAGCAAAAT	59.680	34.615	17.71	0.00	33.32	1.82
7683	9864	3.183373	CGTCACTCTGAGAGAACAAAAGC	59.817	47.826	17.71	0.00	33.32	3.51
7854	10035	2.416747	TGATGTGGCTTCGTCTTCTTG	58.583	47.619	0.00	0.00	0.00	3.02
7862	10043	0.674581	TCAGGCTTGATGTGGCTTCG	60.675	55.000	0.00	0.00	38.29	3.79
8015	10215	1.166531	AGACAAGGCAACGAACAGGC	61.167	55.000	0.00	0.00	46.39	4.85
8016	10216	1.308998	AAGACAAGGCAACGAACAGG	58.691	50.000	0.00	0.00	46.39	4.00
8059	10264	5.008613	TCGCATCTGGAAATTATTAACCTGC	59.991	40.000	0.00	0.00	0.00	4.85
8118	10323	5.254115	ACAGTGCTACATAGTCAGAGTACA	58.746	41.667	0.00	0.00	0.00	2.90
8123	10328	7.646548	AGAATAACAGTGCTACATAGTCAGA	57.353	36.000	0.00	0.00	0.00	3.27
8159	10364	3.743269	GCCCGGTACATTGCTACATAGTT	60.743	47.826	0.00	0.00	0.00	2.24
8171	10376	0.746563	CGAACATTGGCCCGGTACAT	60.747	55.000	0.00	0.00	0.00	2.29
8197	10402	1.694696	CCAAACATTCCCCCGGAAAAA	59.305	47.619	0.73	0.00	45.41	1.94
8198	10403	1.343069	CCAAACATTCCCCCGGAAAA	58.657	50.000	0.73	0.00	45.41	2.29
8199	10404	0.188834	ACCAAACATTCCCCCGGAAA	59.811	50.000	0.73	0.00	45.41	3.13
8200	10405	0.188834	AACCAAACATTCCCCCGGAA	59.811	50.000	0.73	0.00	46.39	4.30
8201	10406	0.188834	AAACCAAACATTCCCCCGGA	59.811	50.000	0.73	0.00	0.00	5.14
8202	10407	1.926108	TAAACCAAACATTCCCCCGG	58.074	50.000	0.00	0.00	0.00	5.73
8203	10408	5.221362	GGATTATAAACCAAACATTCCCCCG	60.221	44.000	6.89	0.00	0.00	5.73
8204	10409	5.221362	CGGATTATAAACCAAACATTCCCCC	60.221	44.000	11.87	0.00	0.00	5.40
8205	10410	5.361571	ACGGATTATAAACCAAACATTCCCC	59.638	40.000	11.87	0.00	0.00	4.81
8206	10411	6.459670	ACGGATTATAAACCAAACATTCCC	57.540	37.500	11.87	0.00	0.00	3.97
8207	10412	6.183360	ACGACGGATTATAAACCAAACATTCC	60.183	38.462	11.87	0.06	0.00	3.01
8208	10413	6.778108	ACGACGGATTATAAACCAAACATTC	58.222	36.000	11.87	0.00	0.00	2.67
8209	10414	6.183360	GGACGACGGATTATAAACCAAACATT	60.183	38.462	11.87	0.00	0.00	2.71
8210	10415	5.295045	GGACGACGGATTATAAACCAAACAT	59.705	40.000	11.87	0.00	0.00	2.71
8211	10416	4.630940	GGACGACGGATTATAAACCAAACA	59.369	41.667	11.87	0.00	0.00	2.83
8212	10417	4.630940	TGGACGACGGATTATAAACCAAAC	59.369	41.667	11.87	2.25	0.00	2.93
8213	10418	4.829968	TGGACGACGGATTATAAACCAAA	58.170	39.130	11.87	0.00	0.00	3.28
8214	10419	4.468765	TGGACGACGGATTATAAACCAA	57.531	40.909	11.87	0.00	0.00	3.67
8215	10420	4.675976	ATGGACGACGGATTATAAACCA	57.324	40.909	11.87	0.00	0.00	3.67
8216	10421	5.295045	ACAAATGGACGACGGATTATAAACC	59.705	40.000	0.00	1.68	0.00	3.27
8217	10422	6.354039	ACAAATGGACGACGGATTATAAAC	57.646	37.500	0.00	0.00	0.00	2.01
8218	10423	6.372103	ACAACAAATGGACGACGGATTATAAA	59.628	34.615	0.00	0.00	0.00	1.40
8219	10424	5.875910	ACAACAAATGGACGACGGATTATAA	59.124	36.000	0.00	0.00	0.00	0.98
8220	10425	5.292345	CACAACAAATGGACGACGGATTATA	59.708	40.000	0.00	0.00	0.00	0.98
8232	10437	7.036220	ACGTATTTTCAAACACAACAAATGGA	58.964	30.769	0.00	0.00	0.00	3.41
8339	10801	1.071605	GTTCGCTCGAGCTCACAATT	58.928	50.000	32.88	0.00	39.32	2.32
8350	10812	3.250744	TCAGGAATTTACTGTTCGCTCG	58.749	45.455	8.48	0.00	37.25	5.03
8389	10851	8.816640	TTCTTGCCAAAATAATCAGAACTTTC	57.183	30.769	0.00	0.00	0.00	2.62
8427	10889	4.654015	GAAAGTTTGCACACGTGTAGAAA	58.346	39.130	22.90	18.90	0.00	2.52
8434	10896	1.297304	CGCGAAAGTTTGCACACGT	60.297	52.632	0.00	0.00	37.43	4.49
8438	10900	3.091022	CGCCGCGAAAGTTTGCAC	61.091	61.111	8.23	0.00	37.43	4.57
8455	10917	1.931635	TTTTTGCCCATACCTCCACC	58.068	50.000	0.00	0.00	0.00	4.61
8498	10960	5.178067	GGATGCTCCAAAAAGAATGTTTGTG	59.822	40.000	0.00	0.00	41.78	3.33
8500	10962	5.299148	TGGATGCTCCAAAAAGAATGTTTG	58.701	37.500	2.78	0.00	45.00	2.93
8546	11008	3.623848	TGGAAACACATCCGTGAGG	57.376	52.632	0.00	0.00	46.80	3.86
8558	11020	5.459762	CCGTGCATATTTTCATGATGGAAAC	59.540	40.000	0.05	0.00	36.56	2.78
8559	11021	5.359292	TCCGTGCATATTTTCATGATGGAAA	59.641	36.000	0.65	0.65	35.11	3.13
8560	11022	4.886489	TCCGTGCATATTTTCATGATGGAA	59.114	37.500	0.00	0.00	0.00	3.53
8561	11023	4.459330	TCCGTGCATATTTTCATGATGGA	58.541	39.130	0.00	0.00	0.00	3.41
8562	11024	4.834357	TCCGTGCATATTTTCATGATGG	57.166	40.909	0.00	0.00	0.00	3.51
8563	11025	7.368480	TCTATCCGTGCATATTTTCATGATG	57.632	36.000	0.00	0.00	0.00	3.07
8564	11026	7.984422	TTCTATCCGTGCATATTTTCATGAT	57.016	32.000	0.00	0.00	0.00	2.45
8565	11027	7.714813	TCTTTCTATCCGTGCATATTTTCATGA	59.285	33.333	0.00	0.00	0.00	3.07
8566	11028	7.864686	TCTTTCTATCCGTGCATATTTTCATG	58.135	34.615	0.00	0.00	0.00	3.07
8567	11029	8.345565	GTTCTTTCTATCCGTGCATATTTTCAT	58.654	33.333	0.00	0.00	0.00	2.57
8634	11096	9.403583	TGAACAGTAAACTCCAAAAGAATAGTT	57.596	29.630	0.00	0.00	33.72	2.24
8641	11103	4.642885	TGGGTGAACAGTAAACTCCAAAAG	59.357	41.667	0.00	0.00	0.00	2.27
8649	11111	3.211045	TGAGCTTGGGTGAACAGTAAAC	58.789	45.455	0.00	0.00	0.00	2.01
8655	11117	1.142667	TGACATGAGCTTGGGTGAACA	59.857	47.619	0.00	0.00	0.00	3.18
8695	11157	1.204146	ACCGCTCCACTTCCATACAT	58.796	50.000	0.00	0.00	0.00	2.29
8705	11167	0.389948	CTTCCACTGTACCGCTCCAC	60.390	60.000	0.00	0.00	0.00	4.02
8717	11179	2.883828	CGCCTCCCACACTTCCACT	61.884	63.158	0.00	0.00	0.00	4.00
8718	11180	2.358737	CGCCTCCCACACTTCCAC	60.359	66.667	0.00	0.00	0.00	4.02
8753	11215	3.134262	GGTTGGGGTAGTTATGGAGAGAC	59.866	52.174	0.00	0.00	0.00	3.36
8757	11219	1.493446	GGGGTTGGGGTAGTTATGGAG	59.507	57.143	0.00	0.00	0.00	3.86
8758	11220	1.598869	GGGGTTGGGGTAGTTATGGA	58.401	55.000	0.00	0.00	0.00	3.41
8768	11230	3.527427	AAAGGGTGGGGGTTGGGG	61.527	66.667	0.00	0.00	0.00	4.96
8790	11252	0.102300	GAGGAGAAAGAGCTCGGAGC	59.898	60.000	22.13	22.13	42.84	4.70
8825	11287	1.694169	GAGGGAGCAAGGGATGGGA	60.694	63.158	0.00	0.00	0.00	4.37
8856	11318	5.252969	TGAATTAGCATTGGATTCACAGC	57.747	39.130	0.00	0.00	35.51	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.