Multiple sequence alignment - TraesCS5D01G225100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G225100 chr5D 100.000 2966 0 0 1 2966 332580519 332583484 0.000000e+00 5478
1 TraesCS5D01G225100 chr5D 83.044 749 122 3 1222 1969 332518085 332518829 0.000000e+00 675
2 TraesCS5D01G225100 chr5B 94.397 1981 79 16 288 2254 388609012 388610974 0.000000e+00 3014
3 TraesCS5D01G225100 chr5B 82.891 754 120 7 1222 1972 388594505 388595252 0.000000e+00 669
4 TraesCS5D01G225100 chr5B 85.389 527 44 13 2418 2939 388677932 388678430 1.580000e-142 516
5 TraesCS5D01G225100 chr5B 84.694 294 28 13 5 289 315184965 315184680 8.100000e-71 278
6 TraesCS5D01G225100 chr5A 94.764 1910 72 10 349 2238 433570601 433572502 0.000000e+00 2948
7 TraesCS5D01G225100 chr5A 82.869 753 124 5 1221 1972 433566889 433567637 0.000000e+00 671
8 TraesCS5D01G225100 chr5A 85.472 530 58 6 2439 2962 433572938 433573454 4.350000e-148 534
9 TraesCS5D01G225100 chr3B 84.138 290 32 10 5 290 764294702 764294423 4.870000e-68 268
10 TraesCS5D01G225100 chr7B 83.849 291 32 11 5 288 22833135 22833417 2.270000e-66 263
11 TraesCS5D01G225100 chr7B 83.673 294 27 14 5 289 383873400 383873119 1.050000e-64 257
12 TraesCS5D01G225100 chr6B 83.000 300 31 12 5 292 670019948 670019657 1.360000e-63 254
13 TraesCS5D01G225100 chr1B 83.221 298 28 13 5 288 652299433 652299722 1.360000e-63 254
14 TraesCS5D01G225100 chr1B 83.103 290 34 13 5 291 552953413 552953136 1.770000e-62 250
15 TraesCS5D01G225100 chr4D 83.162 291 31 12 7 287 491395614 491395896 1.770000e-62 250
16 TraesCS5D01G225100 chr1D 83.108 296 29 14 5 288 11195486 11195772 1.770000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G225100 chr5D 332580519 332583484 2965 False 5478.000000 5478 100.000000 1 2966 1 chr5D.!!$F2 2965
1 TraesCS5D01G225100 chr5D 332518085 332518829 744 False 675.000000 675 83.044000 1222 1969 1 chr5D.!!$F1 747
2 TraesCS5D01G225100 chr5B 388609012 388610974 1962 False 3014.000000 3014 94.397000 288 2254 1 chr5B.!!$F2 1966
3 TraesCS5D01G225100 chr5B 388594505 388595252 747 False 669.000000 669 82.891000 1222 1972 1 chr5B.!!$F1 750
4 TraesCS5D01G225100 chr5A 433566889 433573454 6565 False 1384.333333 2948 87.701667 349 2962 3 chr5A.!!$F1 2613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.033228 TTTTTGCCACGCCTTCCATG 59.967 50.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 5511 0.106519 AGTCCCAAGCTTTGTGCAGT 60.107 50.0 0.0 0.0 45.94 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.630242 AAATTCGTCATGTAATCACATTCCT 57.370 32.000 0.00 0.00 42.98 3.36
39 40 6.609237 ATTCGTCATGTAATCACATTCCTG 57.391 37.500 0.00 0.00 42.98 3.86
42 43 4.875536 CGTCATGTAATCACATTCCTGGAA 59.124 41.667 12.26 12.26 42.98 3.53
45 46 4.210331 ATGTAATCACATTCCTGGAAGGC 58.790 43.478 20.11 4.33 45.79 4.35
47 48 7.615432 ATGTAATCACATTCCTGGAAGGCGT 62.615 44.000 20.11 11.35 45.79 5.68
54 55 4.492604 CTGGAAGGCGTGGGAAAA 57.507 55.556 0.00 0.00 0.00 2.29
55 56 2.727103 CTGGAAGGCGTGGGAAAAA 58.273 52.632 0.00 0.00 0.00 1.94
78 79 7.838771 AAAGAAAATCTATGCTCCAAAATGC 57.161 32.000 0.00 0.00 0.00 3.56
79 80 6.786967 AGAAAATCTATGCTCCAAAATGCT 57.213 33.333 0.00 0.00 0.00 3.79
80 81 7.179076 AGAAAATCTATGCTCCAAAATGCTT 57.821 32.000 0.00 0.00 0.00 3.91
82 83 8.098912 AGAAAATCTATGCTCCAAAATGCTTTT 58.901 29.630 0.00 0.00 0.00 2.27
102 103 8.359642 TGCTTTTGAAAGTAGCATTTTCATAGT 58.640 29.630 0.45 0.00 42.31 2.12
103 104 9.840427 GCTTTTGAAAGTAGCATTTTCATAGTA 57.160 29.630 9.96 0.00 42.31 1.82
106 107 9.515226 TTTGAAAGTAGCATTTTCATAGTACCT 57.485 29.630 9.96 0.00 42.31 3.08
107 108 9.515226 TTGAAAGTAGCATTTTCATAGTACCTT 57.485 29.630 9.96 0.00 42.31 3.50
108 109 9.515226 TGAAAGTAGCATTTTCATAGTACCTTT 57.485 29.630 6.29 0.00 39.05 3.11
126 127 3.941081 TTTTTGCCACGCCTTCCA 58.059 50.000 0.00 0.00 0.00 3.53
127 128 2.435418 TTTTTGCCACGCCTTCCAT 58.565 47.368 0.00 0.00 0.00 3.41
128 129 0.033228 TTTTTGCCACGCCTTCCATG 59.967 50.000 0.00 0.00 0.00 3.66
129 130 2.433231 TTTTGCCACGCCTTCCATGC 62.433 55.000 0.00 0.00 0.00 4.06
130 131 4.657408 TGCCACGCCTTCCATGCA 62.657 61.111 0.00 0.00 0.00 3.96
132 133 1.823470 GCCACGCCTTCCATGCATA 60.823 57.895 0.00 0.00 0.00 3.14
133 134 1.383456 GCCACGCCTTCCATGCATAA 61.383 55.000 0.00 0.00 0.00 1.90
134 135 1.102154 CCACGCCTTCCATGCATAAA 58.898 50.000 0.00 0.00 0.00 1.40
136 137 2.544277 CCACGCCTTCCATGCATAAATG 60.544 50.000 0.00 0.00 0.00 2.32
138 139 2.099592 ACGCCTTCCATGCATAAATGTG 59.900 45.455 0.00 3.81 0.00 3.21
139 140 2.358582 CGCCTTCCATGCATAAATGTGA 59.641 45.455 0.00 0.00 0.00 3.58
141 142 4.500205 CGCCTTCCATGCATAAATGTGATT 60.500 41.667 0.00 0.00 0.00 2.57
142 143 5.362263 GCCTTCCATGCATAAATGTGATTT 58.638 37.500 0.00 0.00 36.29 2.17
143 144 5.464389 GCCTTCCATGCATAAATGTGATTTC 59.536 40.000 0.00 0.00 33.82 2.17
145 146 7.214381 CCTTCCATGCATAAATGTGATTTCAT 58.786 34.615 0.00 0.00 33.82 2.57
147 148 7.349412 TCCATGCATAAATGTGATTTCATGA 57.651 32.000 0.00 0.00 35.60 3.07
148 149 7.958088 TCCATGCATAAATGTGATTTCATGAT 58.042 30.769 0.00 0.00 35.60 2.45
149 150 7.870445 TCCATGCATAAATGTGATTTCATGATG 59.130 33.333 0.00 0.00 35.60 3.07
150 151 7.870445 CCATGCATAAATGTGATTTCATGATGA 59.130 33.333 0.00 0.00 35.60 2.92
151 152 9.255304 CATGCATAAATGTGATTTCATGATGAA 57.745 29.630 3.29 3.29 35.60 2.57
152 153 9.996554 ATGCATAAATGTGATTTCATGATGAAT 57.003 25.926 8.90 0.00 36.11 2.57
153 154 9.825109 TGCATAAATGTGATTTCATGATGAATT 57.175 25.926 8.90 5.47 36.11 2.17
159 160 9.878667 AATGTGATTTCATGATGAATTTTAGCA 57.121 25.926 8.90 0.00 36.11 3.49
160 161 9.878667 ATGTGATTTCATGATGAATTTTAGCAA 57.121 25.926 8.90 0.00 36.11 3.91
161 162 9.708092 TGTGATTTCATGATGAATTTTAGCAAA 57.292 25.926 8.90 0.00 36.11 3.68
162 163 9.962759 GTGATTTCATGATGAATTTTAGCAAAC 57.037 29.630 8.90 0.00 36.11 2.93
163 164 9.708092 TGATTTCATGATGAATTTTAGCAAACA 57.292 25.926 8.90 0.00 36.11 2.83
164 165 9.962759 GATTTCATGATGAATTTTAGCAAACAC 57.037 29.630 8.90 0.00 36.11 3.32
165 166 7.565450 TTCATGATGAATTTTAGCAAACACG 57.435 32.000 3.29 0.00 30.26 4.49
166 167 6.676950 TCATGATGAATTTTAGCAAACACGT 58.323 32.000 0.00 0.00 0.00 4.49
168 169 6.066054 TGATGAATTTTAGCAAACACGTGA 57.934 33.333 25.01 0.00 0.00 4.35
169 170 6.499172 TGATGAATTTTAGCAAACACGTGAA 58.501 32.000 25.01 3.21 0.00 3.18
170 171 6.975197 TGATGAATTTTAGCAAACACGTGAAA 59.025 30.769 25.01 10.68 0.00 2.69
171 172 6.561945 TGAATTTTAGCAAACACGTGAAAC 57.438 33.333 25.01 8.51 0.00 2.78
172 173 6.326375 TGAATTTTAGCAAACACGTGAAACT 58.674 32.000 25.01 15.41 31.75 2.66
173 174 6.809196 TGAATTTTAGCAAACACGTGAAACTT 59.191 30.769 25.01 11.07 31.75 2.66
175 176 7.589574 ATTTTAGCAAACACGTGAAACTTTT 57.410 28.000 25.01 9.00 31.75 2.27
177 178 3.908213 AGCAAACACGTGAAACTTTTGT 58.092 36.364 25.01 9.57 31.19 2.83
178 179 3.917985 AGCAAACACGTGAAACTTTTGTC 59.082 39.130 25.01 15.98 31.19 3.18
179 180 3.670991 GCAAACACGTGAAACTTTTGTCA 59.329 39.130 25.01 0.00 31.19 3.58
180 181 4.149046 GCAAACACGTGAAACTTTTGTCAA 59.851 37.500 25.01 0.00 31.19 3.18
181 182 5.332656 GCAAACACGTGAAACTTTTGTCAAA 60.333 36.000 25.01 0.00 31.19 2.69
252 253 8.468399 AGTTTTTGAATTTTACTGTTAACCCGA 58.532 29.630 2.48 0.00 0.00 5.14
253 254 8.748582 GTTTTTGAATTTTACTGTTAACCCGAG 58.251 33.333 2.48 0.00 0.00 4.63
254 255 7.804843 TTTGAATTTTACTGTTAACCCGAGA 57.195 32.000 2.48 0.00 0.00 4.04
255 256 7.989416 TTGAATTTTACTGTTAACCCGAGAT 57.011 32.000 2.48 0.00 0.00 2.75
257 258 7.162761 TGAATTTTACTGTTAACCCGAGATCA 58.837 34.615 2.48 0.00 0.00 2.92
259 260 8.575649 AATTTTACTGTTAACCCGAGATCATT 57.424 30.769 2.48 0.00 0.00 2.57
261 262 6.978343 TTACTGTTAACCCGAGATCATTTG 57.022 37.500 2.48 0.00 0.00 2.32
262 263 5.160607 ACTGTTAACCCGAGATCATTTGA 57.839 39.130 2.48 0.00 0.00 2.69
263 264 5.178797 ACTGTTAACCCGAGATCATTTGAG 58.821 41.667 2.48 0.00 0.00 3.02
265 266 4.192317 GTTAACCCGAGATCATTTGAGCT 58.808 43.478 0.00 0.00 44.40 4.09
270 271 1.876322 GAGATCATTTGAGCTCGGGG 58.124 55.000 9.64 0.00 45.86 5.73
271 272 1.139853 GAGATCATTTGAGCTCGGGGT 59.860 52.381 9.64 0.00 45.86 4.95
272 273 1.134280 AGATCATTTGAGCTCGGGGTG 60.134 52.381 9.64 5.61 35.67 4.61
273 274 0.911769 ATCATTTGAGCTCGGGGTGA 59.088 50.000 9.64 10.84 0.00 4.02
285 286 2.342648 GGGTGAGAAACTCCGCGT 59.657 61.111 4.92 0.00 33.42 6.01
286 287 1.737008 GGGTGAGAAACTCCGCGTC 60.737 63.158 4.92 0.00 33.42 5.19
287 288 1.737008 GGTGAGAAACTCCGCGTCC 60.737 63.158 4.92 0.00 0.00 4.79
289 290 2.204461 TGAGAAACTCCGCGTCCCA 61.204 57.895 4.92 0.00 0.00 4.37
290 291 1.005394 GAGAAACTCCGCGTCCCAA 60.005 57.895 4.92 0.00 0.00 4.12
291 292 0.601841 GAGAAACTCCGCGTCCCAAA 60.602 55.000 4.92 0.00 0.00 3.28
294 295 0.883370 AAACTCCGCGTCCCAAACTC 60.883 55.000 4.92 0.00 0.00 3.01
295 296 2.809601 CTCCGCGTCCCAAACTCG 60.810 66.667 4.92 0.00 35.87 4.18
296 297 3.569049 CTCCGCGTCCCAAACTCGT 62.569 63.158 4.92 0.00 34.30 4.18
297 298 2.663852 CCGCGTCCCAAACTCGTT 60.664 61.111 4.92 0.00 34.30 3.85
298 299 2.549282 CGCGTCCCAAACTCGTTG 59.451 61.111 0.00 0.00 36.94 4.10
300 301 1.568025 GCGTCCCAAACTCGTTGTC 59.432 57.895 0.00 0.00 35.23 3.18
301 302 0.878961 GCGTCCCAAACTCGTTGTCT 60.879 55.000 0.00 0.00 35.23 3.41
302 303 1.578583 CGTCCCAAACTCGTTGTCTT 58.421 50.000 0.00 0.00 35.23 3.01
304 305 2.353579 CGTCCCAAACTCGTTGTCTTTT 59.646 45.455 0.00 0.00 35.23 2.27
305 306 3.545426 CGTCCCAAACTCGTTGTCTTTTC 60.545 47.826 0.00 0.00 35.23 2.29
306 307 3.375922 GTCCCAAACTCGTTGTCTTTTCA 59.624 43.478 0.00 0.00 35.23 2.69
307 308 4.036380 GTCCCAAACTCGTTGTCTTTTCAT 59.964 41.667 0.00 0.00 35.23 2.57
308 309 4.274950 TCCCAAACTCGTTGTCTTTTCATC 59.725 41.667 0.00 0.00 35.23 2.92
309 310 4.537015 CCAAACTCGTTGTCTTTTCATCC 58.463 43.478 0.00 0.00 35.23 3.51
310 311 4.036262 CCAAACTCGTTGTCTTTTCATCCA 59.964 41.667 0.00 0.00 35.23 3.41
312 313 5.424121 AACTCGTTGTCTTTTCATCCAAG 57.576 39.130 0.00 0.00 0.00 3.61
313 314 4.703897 ACTCGTTGTCTTTTCATCCAAGA 58.296 39.130 0.00 0.00 0.00 3.02
314 315 5.123227 ACTCGTTGTCTTTTCATCCAAGAA 58.877 37.500 0.00 0.00 31.98 2.52
316 317 6.060028 TCGTTGTCTTTTCATCCAAGAAAG 57.940 37.500 0.00 0.00 38.60 2.62
318 319 5.532557 GTTGTCTTTTCATCCAAGAAAGGG 58.467 41.667 0.00 0.00 38.60 3.95
319 320 5.060427 TGTCTTTTCATCCAAGAAAGGGA 57.940 39.130 0.00 0.00 38.60 4.20
321 322 4.460731 GTCTTTTCATCCAAGAAAGGGAGG 59.539 45.833 0.00 0.00 38.60 4.30
322 323 4.106341 TCTTTTCATCCAAGAAAGGGAGGT 59.894 41.667 0.00 0.00 38.60 3.85
323 324 3.721087 TTCATCCAAGAAAGGGAGGTC 57.279 47.619 0.00 0.00 37.96 3.85
324 325 2.921221 TCATCCAAGAAAGGGAGGTCT 58.079 47.619 0.00 0.00 37.96 3.85
325 326 2.840651 TCATCCAAGAAAGGGAGGTCTC 59.159 50.000 0.00 0.00 37.96 3.36
326 327 1.267121 TCCAAGAAAGGGAGGTCTCG 58.733 55.000 0.00 0.00 0.00 4.04
328 329 1.623811 CCAAGAAAGGGAGGTCTCGAA 59.376 52.381 0.00 0.00 0.00 3.71
329 330 2.038557 CCAAGAAAGGGAGGTCTCGAAA 59.961 50.000 0.00 0.00 0.00 3.46
330 331 3.496160 CCAAGAAAGGGAGGTCTCGAAAA 60.496 47.826 0.00 0.00 0.00 2.29
331 332 4.134563 CAAGAAAGGGAGGTCTCGAAAAA 58.865 43.478 0.00 0.00 0.00 1.94
333 334 3.135895 AGAAAGGGAGGTCTCGAAAAACA 59.864 43.478 0.00 0.00 0.00 2.83
334 335 3.570912 AAGGGAGGTCTCGAAAAACAA 57.429 42.857 0.00 0.00 0.00 2.83
335 336 2.847441 AGGGAGGTCTCGAAAAACAAC 58.153 47.619 0.00 0.00 0.00 3.32
336 337 1.529865 GGGAGGTCTCGAAAAACAACG 59.470 52.381 0.00 0.00 0.00 4.10
337 338 1.070108 GGAGGTCTCGAAAAACAACGC 60.070 52.381 0.00 0.00 0.00 4.84
338 339 0.942252 AGGTCTCGAAAAACAACGCC 59.058 50.000 0.00 0.00 0.00 5.68
339 340 0.658897 GGTCTCGAAAAACAACGCCA 59.341 50.000 0.00 0.00 0.00 5.69
340 341 1.265905 GGTCTCGAAAAACAACGCCAT 59.734 47.619 0.00 0.00 0.00 4.40
341 342 2.287368 GGTCTCGAAAAACAACGCCATT 60.287 45.455 0.00 0.00 0.00 3.16
342 343 3.058777 GGTCTCGAAAAACAACGCCATTA 60.059 43.478 0.00 0.00 0.00 1.90
344 345 4.059511 TCTCGAAAAACAACGCCATTAGA 58.940 39.130 0.00 0.00 0.00 2.10
345 346 4.512198 TCTCGAAAAACAACGCCATTAGAA 59.488 37.500 0.00 0.00 0.00 2.10
346 347 5.180492 TCTCGAAAAACAACGCCATTAGAAT 59.820 36.000 0.00 0.00 0.00 2.40
347 348 5.764131 TCGAAAAACAACGCCATTAGAATT 58.236 33.333 0.00 0.00 0.00 2.17
348 349 5.627367 TCGAAAAACAACGCCATTAGAATTG 59.373 36.000 0.00 0.00 0.00 2.32
349 350 5.627367 CGAAAAACAACGCCATTAGAATTGA 59.373 36.000 0.00 0.00 0.00 2.57
351 352 5.957842 AAACAACGCCATTAGAATTGAGA 57.042 34.783 0.00 0.00 0.00 3.27
352 353 6.515272 AAACAACGCCATTAGAATTGAGAT 57.485 33.333 0.00 0.00 0.00 2.75
362 3728 7.171508 GCCATTAGAATTGAGATCGTGATGTTA 59.828 37.037 0.00 0.00 0.00 2.41
363 3729 9.212641 CCATTAGAATTGAGATCGTGATGTTAT 57.787 33.333 0.00 0.00 0.00 1.89
406 3772 2.047002 AACCACGGGCATACCATTAC 57.953 50.000 0.00 0.00 40.22 1.89
407 3773 0.181824 ACCACGGGCATACCATTACC 59.818 55.000 0.00 0.00 40.22 2.85
558 3933 3.991725 CTTGCCTCAGCCCTGCCTC 62.992 68.421 0.00 0.00 38.69 4.70
561 3936 3.095163 CCTCAGCCCTGCCTCCAT 61.095 66.667 0.00 0.00 0.00 3.41
562 3937 2.509916 CTCAGCCCTGCCTCCATC 59.490 66.667 0.00 0.00 0.00 3.51
563 3938 2.041762 TCAGCCCTGCCTCCATCT 59.958 61.111 0.00 0.00 0.00 2.90
655 4035 2.846652 GCCTGGCATCTGCATCAGC 61.847 63.158 15.17 0.00 44.36 4.26
698 4078 1.876322 GGCTGCGAGCTGAAATAGAT 58.124 50.000 6.15 0.00 41.99 1.98
699 4079 3.032017 GGCTGCGAGCTGAAATAGATA 57.968 47.619 6.15 0.00 41.99 1.98
806 4195 2.978452 AAGATCCGATGGAAGGCGCG 62.978 60.000 0.00 0.00 34.34 6.86
883 4272 4.461992 ACGATTCAACCAACAGTTTACG 57.538 40.909 0.00 0.00 36.18 3.18
887 4276 0.659123 CAACCAACAGTTTACGCGGC 60.659 55.000 12.47 0.00 36.18 6.53
1216 4606 4.194720 CCGAGAAGGCCGTCTCCG 62.195 72.222 34.07 28.14 40.93 4.63
1218 4608 3.453679 GAGAAGGCCGTCTCCGCT 61.454 66.667 31.69 7.25 38.51 5.52
1988 5384 8.630037 GTGATCGATCAAGGGGTTTATATTTTT 58.370 33.333 28.83 0.00 38.75 1.94
2025 5421 1.837538 CGCCGTGACGTGGTTGATTT 61.838 55.000 3.64 0.00 0.00 2.17
2031 5427 1.959985 TGACGTGGTTGATTTTGCCAT 59.040 42.857 0.00 0.00 34.52 4.40
2115 5511 3.642778 GAGGGCGCACGTAGCTGAA 62.643 63.158 10.83 0.00 42.61 3.02
2116 5512 3.488090 GGGCGCACGTAGCTGAAC 61.488 66.667 10.83 0.00 42.61 3.18
2117 5513 2.432628 GGCGCACGTAGCTGAACT 60.433 61.111 10.83 0.00 42.61 3.01
2118 5514 2.730672 GGCGCACGTAGCTGAACTG 61.731 63.158 10.83 0.00 42.61 3.16
2119 5515 2.772189 CGCACGTAGCTGAACTGC 59.228 61.111 0.00 0.00 42.61 4.40
2167 5563 2.734606 TCGTTGATTCAGTTCGCGATTT 59.265 40.909 10.88 0.00 0.00 2.17
2169 5565 3.906008 CGTTGATTCAGTTCGCGATTTTT 59.094 39.130 10.88 0.00 0.00 1.94
2177 5573 0.384974 TTCGCGATTTTTGCCGTGAC 60.385 50.000 10.88 0.00 43.64 3.67
2205 5604 1.279271 AGGTGTGGAATGGTAGACTGC 59.721 52.381 0.00 0.00 0.00 4.40
2245 5924 3.850122 GCTTGGCGACTTATCCTTTTT 57.150 42.857 0.00 0.00 0.00 1.94
2246 5925 3.501950 GCTTGGCGACTTATCCTTTTTG 58.498 45.455 0.00 0.00 0.00 2.44
2247 5926 3.190535 GCTTGGCGACTTATCCTTTTTGA 59.809 43.478 0.00 0.00 0.00 2.69
2249 5928 4.759516 TGGCGACTTATCCTTTTTGAAC 57.240 40.909 0.00 0.00 0.00 3.18
2250 5929 4.138290 TGGCGACTTATCCTTTTTGAACA 58.862 39.130 0.00 0.00 0.00 3.18
2251 5930 4.764823 TGGCGACTTATCCTTTTTGAACAT 59.235 37.500 0.00 0.00 0.00 2.71
2252 5931 5.941058 TGGCGACTTATCCTTTTTGAACATA 59.059 36.000 0.00 0.00 0.00 2.29
2253 5932 6.431543 TGGCGACTTATCCTTTTTGAACATAA 59.568 34.615 0.00 0.00 0.00 1.90
2254 5933 6.967199 GGCGACTTATCCTTTTTGAACATAAG 59.033 38.462 0.00 0.00 34.51 1.73
2255 5934 6.967199 GCGACTTATCCTTTTTGAACATAAGG 59.033 38.462 0.00 0.00 39.82 2.69
2260 5939 5.682943 TCCTTTTTGAACATAAGGACGTG 57.317 39.130 0.00 0.00 41.80 4.49
2261 5940 4.517453 TCCTTTTTGAACATAAGGACGTGG 59.483 41.667 0.00 0.00 41.80 4.94
2262 5941 3.907894 TTTTGAACATAAGGACGTGGC 57.092 42.857 0.00 0.00 0.00 5.01
2263 5942 2.851263 TTGAACATAAGGACGTGGCT 57.149 45.000 0.00 0.00 0.00 4.75
2264 5943 3.965379 TTGAACATAAGGACGTGGCTA 57.035 42.857 0.00 0.00 0.00 3.93
2265 5944 3.520290 TGAACATAAGGACGTGGCTAG 57.480 47.619 0.00 0.00 0.00 3.42
2266 5945 2.829720 TGAACATAAGGACGTGGCTAGT 59.170 45.455 0.00 0.00 0.00 2.57
2267 5946 3.259876 TGAACATAAGGACGTGGCTAGTT 59.740 43.478 0.00 0.00 0.00 2.24
2268 5947 3.521947 ACATAAGGACGTGGCTAGTTC 57.478 47.619 0.00 0.00 0.00 3.01
2269 5948 3.097614 ACATAAGGACGTGGCTAGTTCT 58.902 45.455 0.00 0.00 0.00 3.01
2270 5949 3.130693 ACATAAGGACGTGGCTAGTTCTC 59.869 47.826 0.00 0.00 0.00 2.87
2271 5950 1.629043 AAGGACGTGGCTAGTTCTCA 58.371 50.000 0.00 0.00 0.00 3.27
2272 5951 1.178276 AGGACGTGGCTAGTTCTCAG 58.822 55.000 0.00 0.00 0.00 3.35
2273 5952 0.889306 GGACGTGGCTAGTTCTCAGT 59.111 55.000 0.00 0.00 0.00 3.41
2274 5953 1.135344 GGACGTGGCTAGTTCTCAGTC 60.135 57.143 0.00 0.00 0.00 3.51
2275 5954 0.522180 ACGTGGCTAGTTCTCAGTCG 59.478 55.000 0.00 0.00 0.00 4.18
2276 5955 0.803117 CGTGGCTAGTTCTCAGTCGA 59.197 55.000 0.00 0.00 0.00 4.20
2277 5956 1.402259 CGTGGCTAGTTCTCAGTCGAT 59.598 52.381 0.00 0.00 0.00 3.59
2278 5957 2.159366 CGTGGCTAGTTCTCAGTCGATT 60.159 50.000 0.00 0.00 0.00 3.34
2279 5958 3.182967 GTGGCTAGTTCTCAGTCGATTG 58.817 50.000 0.68 0.68 0.00 2.67
2280 5959 3.089284 TGGCTAGTTCTCAGTCGATTGA 58.911 45.455 10.44 10.44 0.00 2.57
2281 5960 3.701542 TGGCTAGTTCTCAGTCGATTGAT 59.298 43.478 11.34 0.00 0.00 2.57
2282 5961 4.887655 TGGCTAGTTCTCAGTCGATTGATA 59.112 41.667 11.34 1.19 0.00 2.15
2283 5962 5.216648 GGCTAGTTCTCAGTCGATTGATAC 58.783 45.833 11.34 12.05 0.00 2.24
2284 5963 5.009210 GGCTAGTTCTCAGTCGATTGATACT 59.991 44.000 21.27 21.27 0.00 2.12
2285 5964 6.460399 GGCTAGTTCTCAGTCGATTGATACTT 60.460 42.308 22.13 9.47 0.00 2.24
2286 5965 7.255173 GGCTAGTTCTCAGTCGATTGATACTTA 60.255 40.741 22.13 9.95 0.00 2.24
2287 5966 8.129840 GCTAGTTCTCAGTCGATTGATACTTAA 58.870 37.037 22.13 10.90 0.00 1.85
2288 5967 9.440784 CTAGTTCTCAGTCGATTGATACTTAAC 57.559 37.037 22.13 15.80 0.00 2.01
2289 5968 8.057536 AGTTCTCAGTCGATTGATACTTAACT 57.942 34.615 11.34 12.14 0.00 2.24
2290 5969 9.175312 AGTTCTCAGTCGATTGATACTTAACTA 57.825 33.333 11.34 0.00 0.00 2.24
2291 5970 9.784680 GTTCTCAGTCGATTGATACTTAACTAA 57.215 33.333 11.34 0.00 0.00 2.24
2294 5973 9.440784 CTCAGTCGATTGATACTTAACTAAGTC 57.559 37.037 11.34 0.00 44.77 3.01
2295 5974 9.175312 TCAGTCGATTGATACTTAACTAAGTCT 57.825 33.333 6.51 0.00 44.77 3.24
2296 5975 9.790389 CAGTCGATTGATACTTAACTAAGTCTT 57.210 33.333 0.86 0.00 44.77 3.01
2308 5987 9.228949 ACTTAACTAAGTCTTATTCGACTGAGA 57.771 33.333 11.32 0.00 42.73 3.27
2316 5995 9.706691 AAGTCTTATTCGACTGAGATTTAACAA 57.293 29.630 4.03 0.00 43.14 2.83
2317 5996 9.360093 AGTCTTATTCGACTGAGATTTAACAAG 57.640 33.333 0.59 0.00 42.39 3.16
2318 5997 9.355215 GTCTTATTCGACTGAGATTTAACAAGA 57.645 33.333 0.59 0.00 0.00 3.02
2319 5998 9.355215 TCTTATTCGACTGAGATTTAACAAGAC 57.645 33.333 0.00 0.00 0.00 3.01
2320 5999 9.360093 CTTATTCGACTGAGATTTAACAAGACT 57.640 33.333 0.00 0.00 0.00 3.24
2321 6000 7.588143 ATTCGACTGAGATTTAACAAGACTG 57.412 36.000 0.00 0.00 0.00 3.51
2373 6052 2.278271 GCACGTAGAGCTCGAGCC 60.278 66.667 32.94 23.39 41.95 4.70
2386 6065 0.037326 TCGAGCCCATGTGTGTTCTC 60.037 55.000 0.00 0.00 0.00 2.87
2387 6066 0.320683 CGAGCCCATGTGTGTTCTCA 60.321 55.000 0.00 0.00 0.00 3.27
2417 6096 2.429610 TGACATACTTCTTCGGGTAGCC 59.570 50.000 0.00 0.00 0.00 3.93
2444 6159 2.358737 CCGGCACCACAGAAGGAC 60.359 66.667 0.00 0.00 0.00 3.85
2449 6164 0.877071 GCACCACAGAAGGACATGTG 59.123 55.000 1.15 0.00 45.10 3.21
2465 6180 5.998363 GGACATGTGTTCCCTAATTATCCTC 59.002 44.000 1.15 0.00 0.00 3.71
2467 6182 6.595682 ACATGTGTTCCCTAATTATCCTCTG 58.404 40.000 0.00 0.00 0.00 3.35
2472 6187 4.292186 TCCCTAATTATCCTCTGCATGC 57.708 45.455 11.82 11.82 0.00 4.06
2483 6198 2.423185 CCTCTGCATGCGGTTTATTTGA 59.577 45.455 25.42 3.27 0.00 2.69
2487 6202 2.816672 TGCATGCGGTTTATTTGACTCA 59.183 40.909 14.09 0.00 0.00 3.41
2498 6213 6.970613 GGTTTATTTGACTCAAACGAAACACT 59.029 34.615 26.55 9.26 40.44 3.55
2500 6215 5.811399 ATTTGACTCAAACGAAACACTCA 57.189 34.783 6.35 0.00 36.13 3.41
2512 6227 6.920569 ACGAAACACTCATACTTTCAAGTT 57.079 33.333 0.00 0.00 40.37 2.66
2517 6232 9.567848 GAAACACTCATACTTTCAAGTTTCAAA 57.432 29.630 0.00 0.00 41.70 2.69
2518 6233 9.921637 AAACACTCATACTTTCAAGTTTCAAAA 57.078 25.926 0.00 0.00 40.37 2.44
2527 6242 7.949186 ACTTTCAAGTTTCAAAATCGTGTTTC 58.051 30.769 0.00 0.00 35.21 2.78
2544 6259 0.817634 TTCCACACCTGCTGAAACGG 60.818 55.000 0.00 0.00 0.00 4.44
2552 6267 1.021202 CTGCTGAAACGGTGGTTCAA 58.979 50.000 0.00 0.00 34.62 2.69
2575 6290 3.989817 AGCATTTTGATTTTCGGCTGAAC 59.010 39.130 7.69 0.00 32.71 3.18
2577 6292 3.972950 TTTTGATTTTCGGCTGAACGA 57.027 38.095 7.69 0.00 41.76 3.85
2586 6301 1.066605 TCGGCTGAACGAACCTATAGC 59.933 52.381 0.00 0.00 40.34 2.97
2588 6303 2.292569 CGGCTGAACGAACCTATAGCTA 59.707 50.000 0.00 0.00 35.47 3.32
2603 6318 2.062971 AGCTATTGATGGCAAGGTGG 57.937 50.000 0.00 0.00 37.45 4.61
2627 6342 4.084888 CGTGACGCCTTTTCCGCC 62.085 66.667 0.00 0.00 0.00 6.13
2629 6344 2.203224 TGACGCCTTTTCCGCCAA 60.203 55.556 0.00 0.00 0.00 4.52
2678 6393 2.040947 CCCCTCCAGCTTTCTTCTTCTT 59.959 50.000 0.00 0.00 0.00 2.52
2681 6396 4.252878 CCTCCAGCTTTCTTCTTCTTCTC 58.747 47.826 0.00 0.00 0.00 2.87
2682 6397 4.252878 CTCCAGCTTTCTTCTTCTTCTCC 58.747 47.826 0.00 0.00 0.00 3.71
2687 6402 6.293900 CCAGCTTTCTTCTTCTTCTCCTTTTC 60.294 42.308 0.00 0.00 0.00 2.29
2689 6404 6.262049 AGCTTTCTTCTTCTTCTCCTTTTCAC 59.738 38.462 0.00 0.00 0.00 3.18
2711 6426 3.686726 CGTCCTTTCTTCCAGATTTCAGG 59.313 47.826 0.00 0.00 0.00 3.86
2747 6462 4.532834 TGTAAGCATATTCTTTGGACCCC 58.467 43.478 0.00 0.00 0.00 4.95
2778 6498 3.731867 CGTCATATTTGGAGGCAGTTTGC 60.732 47.826 0.00 0.00 44.08 3.68
2792 6512 3.971032 AGTTTGCAAACTGAGTGTAGC 57.029 42.857 37.28 11.88 46.80 3.58
2793 6513 3.545703 AGTTTGCAAACTGAGTGTAGCT 58.454 40.909 37.28 14.63 46.80 3.32
2794 6514 3.561725 AGTTTGCAAACTGAGTGTAGCTC 59.438 43.478 37.28 11.20 46.80 4.09
2795 6515 4.923333 AGTTTGCAAACTGAGTGTAGCTCA 60.923 41.667 37.28 0.00 46.80 4.26
2804 6524 3.157932 GAGTGTAGCTCAGATGGTGAC 57.842 52.381 0.00 0.00 43.58 3.67
2808 6528 4.040952 AGTGTAGCTCAGATGGTGACTTTT 59.959 41.667 0.00 0.00 0.00 2.27
2814 6534 4.276926 GCTCAGATGGTGACTTTTCTTGTT 59.723 41.667 0.00 0.00 0.00 2.83
2861 6581 0.685097 TAGAGTTGGCACTGGTGGTC 59.315 55.000 2.84 0.00 31.22 4.02
2864 6584 2.203139 TTGGCACTGGTGGTCACG 60.203 61.111 2.84 0.00 0.00 4.35
2866 6586 2.203153 GGCACTGGTGGTCACGTT 60.203 61.111 2.84 0.00 0.00 3.99
2868 6588 1.381165 GGCACTGGTGGTCACGTTTT 61.381 55.000 2.84 0.00 0.00 2.43
2881 6601 6.581166 GTGGTCACGTTTTCCTTGATTTATTC 59.419 38.462 0.00 0.00 0.00 1.75
2888 6608 6.072175 CGTTTTCCTTGATTTATTCCAGGTCA 60.072 38.462 0.00 0.00 38.24 4.02
2892 6612 5.822519 TCCTTGATTTATTCCAGGTCATTCG 59.177 40.000 0.00 0.00 38.24 3.34
2901 6621 4.238761 TCCAGGTCATTCGTCGATATTC 57.761 45.455 0.00 0.00 0.00 1.75
2908 6628 4.441415 GTCATTCGTCGATATTCTTCGCTT 59.559 41.667 0.00 0.00 38.97 4.68
2909 6629 4.441087 TCATTCGTCGATATTCTTCGCTTG 59.559 41.667 0.00 0.00 38.97 4.01
2913 6633 3.116300 GTCGATATTCTTCGCTTGCTCA 58.884 45.455 0.00 0.00 38.97 4.26
2919 6639 0.243636 TCTTCGCTTGCTCACGATCA 59.756 50.000 0.00 0.00 38.25 2.92
2934 6654 3.426859 CACGATCATTCTATGGTTCGCTC 59.573 47.826 0.00 0.00 38.77 5.03
2939 6659 0.248498 TTCTATGGTTCGCTCGCTCG 60.248 55.000 0.00 0.00 0.00 5.03
2941 6661 2.669808 CTATGGTTCGCTCGCTCGCT 62.670 60.000 0.00 0.00 0.00 4.93
2942 6662 2.663630 TATGGTTCGCTCGCTCGCTC 62.664 60.000 0.00 0.00 0.00 5.03
2954 6674 3.107447 TCGCTCGCGATTAGCTCA 58.893 55.556 10.36 0.00 44.01 4.26
2957 6677 0.432738 CGCTCGCGATTAGCTCATTC 59.567 55.000 10.36 0.00 45.59 2.67
2959 6679 1.604185 GCTCGCGATTAGCTCATTCCT 60.604 52.381 10.36 0.00 45.59 3.36
2961 6681 2.728839 CTCGCGATTAGCTCATTCCTTC 59.271 50.000 10.36 0.00 45.59 3.46
2962 6682 2.100749 TCGCGATTAGCTCATTCCTTCA 59.899 45.455 3.71 0.00 45.59 3.02
2963 6683 2.474359 CGCGATTAGCTCATTCCTTCAG 59.526 50.000 0.00 0.00 45.59 3.02
2964 6684 3.462021 GCGATTAGCTCATTCCTTCAGT 58.538 45.455 0.00 0.00 44.04 3.41
2965 6685 3.873952 GCGATTAGCTCATTCCTTCAGTT 59.126 43.478 0.00 0.00 44.04 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.522830 AGGAATGTGATTACATGACGAATTTTT 58.477 29.630 3.56 0.00 46.54 1.94
13 14 7.970061 CAGGAATGTGATTACATGACGAATTTT 59.030 33.333 3.56 0.00 46.54 1.82
14 15 7.415541 CCAGGAATGTGATTACATGACGAATTT 60.416 37.037 3.56 0.00 46.54 1.82
16 17 5.528690 CCAGGAATGTGATTACATGACGAAT 59.471 40.000 3.56 0.00 46.54 3.34
17 18 4.875536 CCAGGAATGTGATTACATGACGAA 59.124 41.667 3.56 0.00 46.54 3.85
19 20 4.441792 TCCAGGAATGTGATTACATGACG 58.558 43.478 3.56 0.00 46.54 4.35
20 21 5.297776 CCTTCCAGGAATGTGATTACATGAC 59.702 44.000 1.09 0.68 46.54 3.06
21 22 5.439721 CCTTCCAGGAATGTGATTACATGA 58.560 41.667 1.09 0.00 46.54 3.07
23 24 4.210331 GCCTTCCAGGAATGTGATTACAT 58.790 43.478 1.09 0.00 41.73 2.29
26 27 2.238646 ACGCCTTCCAGGAATGTGATTA 59.761 45.455 21.22 0.00 37.67 1.75
27 28 1.004745 ACGCCTTCCAGGAATGTGATT 59.995 47.619 21.22 1.04 37.67 2.57
28 29 0.620556 ACGCCTTCCAGGAATGTGAT 59.379 50.000 21.22 6.26 37.67 3.06
29 30 0.321564 CACGCCTTCCAGGAATGTGA 60.322 55.000 21.22 0.00 37.67 3.58
30 31 1.308069 CCACGCCTTCCAGGAATGTG 61.308 60.000 14.65 14.65 37.67 3.21
31 32 1.002134 CCACGCCTTCCAGGAATGT 60.002 57.895 1.09 0.00 37.67 2.71
32 33 1.750399 CCCACGCCTTCCAGGAATG 60.750 63.158 1.09 0.51 37.67 2.67
33 34 1.497309 TTCCCACGCCTTCCAGGAAT 61.497 55.000 1.09 0.00 37.67 3.01
34 35 1.710996 TTTCCCACGCCTTCCAGGAA 61.711 55.000 0.71 0.71 37.67 3.36
35 36 1.710996 TTTTCCCACGCCTTCCAGGA 61.711 55.000 0.00 0.00 37.67 3.86
36 37 0.825840 TTTTTCCCACGCCTTCCAGG 60.826 55.000 0.00 0.00 38.80 4.45
52 53 8.724229 GCATTTTGGAGCATAGATTTTCTTTTT 58.276 29.630 0.00 0.00 0.00 1.94
53 54 8.098912 AGCATTTTGGAGCATAGATTTTCTTTT 58.901 29.630 0.00 0.00 0.00 2.27
54 55 7.618137 AGCATTTTGGAGCATAGATTTTCTTT 58.382 30.769 0.00 0.00 0.00 2.52
55 56 7.179076 AGCATTTTGGAGCATAGATTTTCTT 57.821 32.000 0.00 0.00 0.00 2.52
56 57 6.786967 AGCATTTTGGAGCATAGATTTTCT 57.213 33.333 0.00 0.00 0.00 2.52
77 78 8.748380 ACTATGAAAATGCTACTTTCAAAAGC 57.252 30.769 10.90 0.00 43.87 3.51
80 81 9.515226 AGGTACTATGAAAATGCTACTTTCAAA 57.485 29.630 10.90 0.00 43.87 2.69
82 83 9.515226 AAAGGTACTATGAAAATGCTACTTTCA 57.485 29.630 9.74 9.74 41.90 2.69
109 110 0.033228 CATGGAAGGCGTGGCAAAAA 59.967 50.000 0.00 0.00 0.00 1.94
110 111 1.664873 CATGGAAGGCGTGGCAAAA 59.335 52.632 0.00 0.00 0.00 2.44
111 112 2.929903 GCATGGAAGGCGTGGCAAA 61.930 57.895 0.00 0.00 29.35 3.68
112 113 3.372730 GCATGGAAGGCGTGGCAA 61.373 61.111 0.00 0.00 29.35 4.52
118 119 7.709412 GAAATCACATTTATGCATGGAAGGCG 61.709 42.308 10.16 0.44 38.64 5.52
120 121 6.575267 TGAAATCACATTTATGCATGGAAGG 58.425 36.000 10.16 8.49 31.47 3.46
121 122 7.923878 TCATGAAATCACATTTATGCATGGAAG 59.076 33.333 10.16 0.00 34.94 3.46
122 123 7.783042 TCATGAAATCACATTTATGCATGGAA 58.217 30.769 10.16 4.56 34.94 3.53
123 124 7.349412 TCATGAAATCACATTTATGCATGGA 57.651 32.000 10.16 0.00 34.94 3.41
125 126 8.810652 TCATCATGAAATCACATTTATGCATG 57.189 30.769 10.16 0.00 35.24 4.06
126 127 9.996554 ATTCATCATGAAATCACATTTATGCAT 57.003 25.926 3.63 3.79 40.12 3.96
127 128 9.825109 AATTCATCATGAAATCACATTTATGCA 57.175 25.926 3.63 0.00 40.12 3.96
133 134 9.878667 TGCTAAAATTCATCATGAAATCACATT 57.121 25.926 3.63 0.00 40.12 2.71
134 135 9.878667 TTGCTAAAATTCATCATGAAATCACAT 57.121 25.926 3.63 0.00 40.12 3.21
136 137 9.962759 GTTTGCTAAAATTCATCATGAAATCAC 57.037 29.630 3.63 0.00 40.12 3.06
138 139 9.962759 GTGTTTGCTAAAATTCATCATGAAATC 57.037 29.630 3.63 0.00 40.12 2.17
139 140 8.649841 CGTGTTTGCTAAAATTCATCATGAAAT 58.350 29.630 3.63 0.00 40.12 2.17
141 142 7.114670 CACGTGTTTGCTAAAATTCATCATGAA 59.885 33.333 7.58 1.59 41.09 2.57
142 143 6.581919 CACGTGTTTGCTAAAATTCATCATGA 59.418 34.615 7.58 0.00 0.00 3.07
143 144 6.581919 TCACGTGTTTGCTAAAATTCATCATG 59.418 34.615 16.51 0.00 0.00 3.07
145 146 6.066054 TCACGTGTTTGCTAAAATTCATCA 57.934 33.333 16.51 0.00 0.00 3.07
147 148 6.978080 AGTTTCACGTGTTTGCTAAAATTCAT 59.022 30.769 16.51 0.00 0.00 2.57
148 149 6.326375 AGTTTCACGTGTTTGCTAAAATTCA 58.674 32.000 16.51 0.00 0.00 2.57
149 150 6.806120 AGTTTCACGTGTTTGCTAAAATTC 57.194 33.333 16.51 0.00 0.00 2.17
150 151 7.589574 AAAGTTTCACGTGTTTGCTAAAATT 57.410 28.000 16.51 9.91 0.00 1.82
151 152 7.117092 ACAAAAGTTTCACGTGTTTGCTAAAAT 59.883 29.630 21.62 9.55 33.46 1.82
152 153 6.421202 ACAAAAGTTTCACGTGTTTGCTAAAA 59.579 30.769 21.62 9.58 33.46 1.52
153 154 5.921408 ACAAAAGTTTCACGTGTTTGCTAAA 59.079 32.000 21.62 10.19 33.46 1.85
154 155 5.462405 ACAAAAGTTTCACGTGTTTGCTAA 58.538 33.333 21.62 5.01 33.46 3.09
155 156 5.049398 ACAAAAGTTTCACGTGTTTGCTA 57.951 34.783 21.62 0.00 33.46 3.49
156 157 3.908213 ACAAAAGTTTCACGTGTTTGCT 58.092 36.364 21.62 11.79 33.46 3.91
158 159 5.814314 TTGACAAAAGTTTCACGTGTTTG 57.186 34.783 20.63 20.63 35.72 2.93
159 160 6.446659 CTTTGACAAAAGTTTCACGTGTTT 57.553 33.333 16.51 5.72 38.40 2.83
225 226 9.733219 CGGGTTAACAGTAAAATTCAAAAACTA 57.267 29.630 8.10 0.00 0.00 2.24
226 227 8.468399 TCGGGTTAACAGTAAAATTCAAAAACT 58.532 29.630 8.10 0.00 0.00 2.66
227 228 8.631676 TCGGGTTAACAGTAAAATTCAAAAAC 57.368 30.769 8.10 0.00 0.00 2.43
228 229 8.684520 TCTCGGGTTAACAGTAAAATTCAAAAA 58.315 29.630 8.10 0.00 0.00 1.94
229 230 8.223177 TCTCGGGTTAACAGTAAAATTCAAAA 57.777 30.769 8.10 0.00 0.00 2.44
230 231 7.804843 TCTCGGGTTAACAGTAAAATTCAAA 57.195 32.000 8.10 0.00 0.00 2.69
232 233 7.162761 TGATCTCGGGTTAACAGTAAAATTCA 58.837 34.615 8.10 0.00 0.00 2.57
233 234 7.605410 TGATCTCGGGTTAACAGTAAAATTC 57.395 36.000 8.10 0.00 0.00 2.17
235 236 8.458843 CAAATGATCTCGGGTTAACAGTAAAAT 58.541 33.333 8.10 0.00 0.00 1.82
236 237 7.662258 TCAAATGATCTCGGGTTAACAGTAAAA 59.338 33.333 8.10 0.00 0.00 1.52
237 238 7.162761 TCAAATGATCTCGGGTTAACAGTAAA 58.837 34.615 8.10 0.00 0.00 2.01
238 239 6.703319 TCAAATGATCTCGGGTTAACAGTAA 58.297 36.000 8.10 0.00 0.00 2.24
239 240 6.288941 TCAAATGATCTCGGGTTAACAGTA 57.711 37.500 8.10 0.00 0.00 2.74
240 241 5.160607 TCAAATGATCTCGGGTTAACAGT 57.839 39.130 8.10 0.00 0.00 3.55
242 243 3.938963 GCTCAAATGATCTCGGGTTAACA 59.061 43.478 8.10 0.00 0.00 2.41
243 244 4.192317 AGCTCAAATGATCTCGGGTTAAC 58.808 43.478 0.00 0.00 0.00 2.01
244 245 4.442706 GAGCTCAAATGATCTCGGGTTAA 58.557 43.478 9.40 0.00 29.21 2.01
245 246 4.060038 GAGCTCAAATGATCTCGGGTTA 57.940 45.455 9.40 0.00 29.21 2.85
246 247 2.911484 GAGCTCAAATGATCTCGGGTT 58.089 47.619 9.40 0.00 29.21 4.11
247 248 2.611225 GAGCTCAAATGATCTCGGGT 57.389 50.000 9.40 0.00 29.21 5.28
252 253 1.134280 CACCCCGAGCTCAAATGATCT 60.134 52.381 15.40 0.00 0.00 2.75
253 254 1.134401 TCACCCCGAGCTCAAATGATC 60.134 52.381 15.40 0.00 0.00 2.92
254 255 0.911769 TCACCCCGAGCTCAAATGAT 59.088 50.000 15.40 0.00 0.00 2.45
255 256 0.250234 CTCACCCCGAGCTCAAATGA 59.750 55.000 15.40 10.24 34.18 2.57
257 258 0.984230 TTCTCACCCCGAGCTCAAAT 59.016 50.000 15.40 0.00 41.98 2.32
259 260 0.034896 GTTTCTCACCCCGAGCTCAA 59.965 55.000 15.40 0.00 41.98 3.02
261 262 0.108567 GAGTTTCTCACCCCGAGCTC 60.109 60.000 2.73 2.73 41.98 4.09
262 263 1.545706 GGAGTTTCTCACCCCGAGCT 61.546 60.000 0.00 0.00 41.98 4.09
263 264 1.079057 GGAGTTTCTCACCCCGAGC 60.079 63.158 0.00 0.00 41.98 5.03
265 266 2.939261 GCGGAGTTTCTCACCCCGA 61.939 63.158 0.00 0.00 42.49 5.14
266 267 2.434359 GCGGAGTTTCTCACCCCG 60.434 66.667 0.00 0.00 42.74 5.73
267 268 2.434359 CGCGGAGTTTCTCACCCC 60.434 66.667 0.00 0.00 31.08 4.95
269 270 1.737008 GGACGCGGAGTTTCTCACC 60.737 63.158 12.47 0.00 31.08 4.02
270 271 1.737008 GGGACGCGGAGTTTCTCAC 60.737 63.158 12.47 0.00 31.08 3.51
271 272 1.750341 TTGGGACGCGGAGTTTCTCA 61.750 55.000 12.47 0.48 31.08 3.27
272 273 0.601841 TTTGGGACGCGGAGTTTCTC 60.602 55.000 12.47 0.00 0.00 2.87
273 274 0.883370 GTTTGGGACGCGGAGTTTCT 60.883 55.000 12.47 0.00 0.00 2.52
275 276 0.883370 GAGTTTGGGACGCGGAGTTT 60.883 55.000 12.47 0.00 0.00 2.66
276 277 1.301479 GAGTTTGGGACGCGGAGTT 60.301 57.895 12.47 0.00 0.00 3.01
277 278 2.342648 GAGTTTGGGACGCGGAGT 59.657 61.111 12.47 0.00 0.00 3.85
278 279 2.809601 CGAGTTTGGGACGCGGAG 60.810 66.667 12.47 0.00 46.03 4.63
282 283 0.878961 AGACAACGAGTTTGGGACGC 60.879 55.000 0.00 0.00 39.84 5.19
283 284 1.578583 AAGACAACGAGTTTGGGACG 58.421 50.000 0.00 0.00 39.84 4.79
285 286 3.611970 TGAAAAGACAACGAGTTTGGGA 58.388 40.909 0.00 0.00 39.84 4.37
286 287 4.537015 GATGAAAAGACAACGAGTTTGGG 58.463 43.478 0.00 0.00 39.84 4.12
287 288 4.036262 TGGATGAAAAGACAACGAGTTTGG 59.964 41.667 0.00 0.00 39.84 3.28
289 290 5.588648 TCTTGGATGAAAAGACAACGAGTTT 59.411 36.000 0.00 0.00 0.00 2.66
290 291 5.123227 TCTTGGATGAAAAGACAACGAGTT 58.877 37.500 0.00 0.00 0.00 3.01
291 292 4.703897 TCTTGGATGAAAAGACAACGAGT 58.296 39.130 0.00 0.00 0.00 4.18
294 295 5.215160 CCTTTCTTGGATGAAAAGACAACG 58.785 41.667 0.00 0.00 35.79 4.10
295 296 5.301805 TCCCTTTCTTGGATGAAAAGACAAC 59.698 40.000 0.00 0.00 35.79 3.32
296 297 5.454062 TCCCTTTCTTGGATGAAAAGACAA 58.546 37.500 0.00 0.00 35.79 3.18
297 298 5.060427 TCCCTTTCTTGGATGAAAAGACA 57.940 39.130 0.00 0.00 35.79 3.41
298 299 4.460731 CCTCCCTTTCTTGGATGAAAAGAC 59.539 45.833 0.00 0.00 35.79 3.01
300 301 4.411013 ACCTCCCTTTCTTGGATGAAAAG 58.589 43.478 0.00 0.00 35.79 2.27
301 302 4.106341 AGACCTCCCTTTCTTGGATGAAAA 59.894 41.667 0.00 0.00 35.79 2.29
302 303 3.657727 AGACCTCCCTTTCTTGGATGAAA 59.342 43.478 0.00 0.00 35.07 2.69
304 305 2.840651 GAGACCTCCCTTTCTTGGATGA 59.159 50.000 0.00 0.00 0.00 2.92
305 306 2.419297 CGAGACCTCCCTTTCTTGGATG 60.419 54.545 0.00 0.00 0.00 3.51
306 307 1.834263 CGAGACCTCCCTTTCTTGGAT 59.166 52.381 0.00 0.00 0.00 3.41
307 308 1.203137 TCGAGACCTCCCTTTCTTGGA 60.203 52.381 0.00 0.00 0.00 3.53
308 309 1.267121 TCGAGACCTCCCTTTCTTGG 58.733 55.000 0.00 0.00 0.00 3.61
309 310 3.402628 TTTCGAGACCTCCCTTTCTTG 57.597 47.619 0.00 0.00 0.00 3.02
310 311 4.135306 GTTTTTCGAGACCTCCCTTTCTT 58.865 43.478 0.00 0.00 0.00 2.52
312 313 3.473625 TGTTTTTCGAGACCTCCCTTTC 58.526 45.455 0.00 0.00 0.00 2.62
313 314 3.570912 TGTTTTTCGAGACCTCCCTTT 57.429 42.857 0.00 0.00 0.00 3.11
314 315 3.211865 GTTGTTTTTCGAGACCTCCCTT 58.788 45.455 0.00 0.00 0.00 3.95
316 317 1.529865 CGTTGTTTTTCGAGACCTCCC 59.470 52.381 0.00 0.00 0.00 4.30
318 319 1.070108 GGCGTTGTTTTTCGAGACCTC 60.070 52.381 0.00 0.00 0.00 3.85
319 320 0.942252 GGCGTTGTTTTTCGAGACCT 59.058 50.000 0.00 0.00 0.00 3.85
321 322 2.681152 ATGGCGTTGTTTTTCGAGAC 57.319 45.000 0.00 0.00 0.00 3.36
322 323 4.059511 TCTAATGGCGTTGTTTTTCGAGA 58.940 39.130 1.27 0.00 0.00 4.04
323 324 4.398549 TCTAATGGCGTTGTTTTTCGAG 57.601 40.909 1.27 0.00 0.00 4.04
324 325 4.815040 TTCTAATGGCGTTGTTTTTCGA 57.185 36.364 1.27 0.00 0.00 3.71
325 326 5.627367 TCAATTCTAATGGCGTTGTTTTTCG 59.373 36.000 1.27 0.00 0.00 3.46
326 327 6.861055 TCTCAATTCTAATGGCGTTGTTTTTC 59.139 34.615 1.27 0.00 0.00 2.29
328 329 6.325919 TCTCAATTCTAATGGCGTTGTTTT 57.674 33.333 1.27 0.00 0.00 2.43
329 330 5.957842 TCTCAATTCTAATGGCGTTGTTT 57.042 34.783 1.27 0.00 0.00 2.83
330 331 5.220662 CGATCTCAATTCTAATGGCGTTGTT 60.221 40.000 1.27 0.00 0.00 2.83
331 332 4.271049 CGATCTCAATTCTAATGGCGTTGT 59.729 41.667 1.27 0.00 0.00 3.32
333 334 4.271049 CACGATCTCAATTCTAATGGCGTT 59.729 41.667 0.00 0.00 0.00 4.84
334 335 3.804325 CACGATCTCAATTCTAATGGCGT 59.196 43.478 0.00 0.00 0.00 5.68
335 336 4.051237 TCACGATCTCAATTCTAATGGCG 58.949 43.478 0.00 0.00 0.00 5.69
336 337 5.468072 ACATCACGATCTCAATTCTAATGGC 59.532 40.000 0.00 0.00 0.00 4.40
337 338 7.488187 AACATCACGATCTCAATTCTAATGG 57.512 36.000 0.00 0.00 0.00 3.16
347 348 9.684448 GAAGATTAGAATAACATCACGATCTCA 57.316 33.333 0.00 0.00 0.00 3.27
348 349 9.134734 GGAAGATTAGAATAACATCACGATCTC 57.865 37.037 0.00 0.00 0.00 2.75
349 350 8.865090 AGGAAGATTAGAATAACATCACGATCT 58.135 33.333 0.00 0.00 0.00 2.75
351 352 8.642432 TCAGGAAGATTAGAATAACATCACGAT 58.358 33.333 0.00 0.00 0.00 3.73
352 353 8.007405 TCAGGAAGATTAGAATAACATCACGA 57.993 34.615 0.00 0.00 0.00 4.35
381 3747 2.173782 TGGTATGCCCGTGGTTATTGAT 59.826 45.455 0.00 0.00 35.15 2.57
558 3933 2.028876 TGCTTTGCATGATGGAGATGG 58.971 47.619 0.00 0.00 31.71 3.51
559 3934 3.793797 TTGCTTTGCATGATGGAGATG 57.206 42.857 0.00 0.00 38.76 2.90
560 3935 3.512329 TGTTTGCTTTGCATGATGGAGAT 59.488 39.130 0.00 0.00 38.76 2.75
561 3936 2.892215 TGTTTGCTTTGCATGATGGAGA 59.108 40.909 0.00 0.00 38.76 3.71
562 3937 3.306917 TGTTTGCTTTGCATGATGGAG 57.693 42.857 0.00 0.00 38.76 3.86
563 3938 3.655486 CTTGTTTGCTTTGCATGATGGA 58.345 40.909 0.00 0.00 38.76 3.41
698 4078 4.467082 AGATGGAATGCCTGCAAACAATTA 59.533 37.500 0.00 0.00 34.31 1.40
699 4079 3.262405 AGATGGAATGCCTGCAAACAATT 59.738 39.130 0.00 0.00 34.31 2.32
779 4160 0.933097 CCATCGGATCTTCTTGTGCG 59.067 55.000 0.00 0.00 0.00 5.34
806 4195 1.141234 GTCGACAAGGGATCCGTCC 59.859 63.158 11.55 0.00 44.29 4.79
809 4198 2.058595 AGGGTCGACAAGGGATCCG 61.059 63.158 18.91 0.00 39.75 4.18
883 4272 1.589803 ACGTGGGATTAATAAGCCGC 58.410 50.000 0.83 0.00 38.00 6.53
887 4276 6.073765 CCTTCGATCAACGTGGGATTAATAAG 60.074 42.308 4.66 6.37 43.13 1.73
1054 4444 2.838693 GAGGAGGAGGTACGGGGC 60.839 72.222 0.00 0.00 0.00 5.80
1603 4999 1.664321 AAGCCGTAGCCGAGGTACAG 61.664 60.000 11.85 4.00 41.25 2.74
2003 5399 2.736995 AACCACGTCACGGCGATG 60.737 61.111 16.62 8.65 36.63 3.84
2004 5400 2.501223 ATCAACCACGTCACGGCGAT 62.501 55.000 16.62 0.00 35.59 4.58
2025 5421 1.295357 CGCGTACACTTCCATGGCAA 61.295 55.000 6.96 1.51 0.00 4.52
2031 5427 1.000052 TGTGAATCGCGTACACTTCCA 60.000 47.619 23.59 9.34 35.83 3.53
2080 5476 3.579709 CCCTCGATCAATCAGGTAATCG 58.420 50.000 0.00 0.00 41.69 3.34
2112 5508 0.746063 CCCAAGCTTTGTGCAGTTCA 59.254 50.000 0.00 0.00 45.94 3.18
2115 5511 0.106519 AGTCCCAAGCTTTGTGCAGT 60.107 50.000 0.00 0.00 45.94 4.40
2116 5512 0.595095 GAGTCCCAAGCTTTGTGCAG 59.405 55.000 0.00 0.00 45.94 4.41
2117 5513 0.183492 AGAGTCCCAAGCTTTGTGCA 59.817 50.000 0.00 0.00 45.94 4.57
2118 5514 0.877743 GAGAGTCCCAAGCTTTGTGC 59.122 55.000 0.00 0.00 43.29 4.57
2119 5515 2.557920 AGAGAGTCCCAAGCTTTGTG 57.442 50.000 0.00 0.00 0.00 3.33
2177 5573 1.002134 ATTCCACACCTTCCGCCAG 60.002 57.895 0.00 0.00 0.00 4.85
2205 5604 2.131709 CAATCCATGGCAGCCCAGG 61.132 63.158 9.64 11.15 46.24 4.45
2239 5918 4.794169 CCACGTCCTTATGTTCAAAAAGG 58.206 43.478 9.57 9.57 41.00 3.11
2240 5919 4.023193 AGCCACGTCCTTATGTTCAAAAAG 60.023 41.667 0.00 0.00 0.00 2.27
2245 5924 2.829720 ACTAGCCACGTCCTTATGTTCA 59.170 45.455 0.00 0.00 0.00 3.18
2246 5925 3.521947 ACTAGCCACGTCCTTATGTTC 57.478 47.619 0.00 0.00 0.00 3.18
2247 5926 3.514309 AGAACTAGCCACGTCCTTATGTT 59.486 43.478 0.00 0.00 0.00 2.71
2249 5928 3.130516 TGAGAACTAGCCACGTCCTTATG 59.869 47.826 0.00 0.00 0.00 1.90
2250 5929 3.362706 TGAGAACTAGCCACGTCCTTAT 58.637 45.455 0.00 0.00 0.00 1.73
2251 5930 2.753452 CTGAGAACTAGCCACGTCCTTA 59.247 50.000 0.00 0.00 0.00 2.69
2252 5931 1.546476 CTGAGAACTAGCCACGTCCTT 59.454 52.381 0.00 0.00 0.00 3.36
2253 5932 1.178276 CTGAGAACTAGCCACGTCCT 58.822 55.000 0.00 0.00 0.00 3.85
2254 5933 0.889306 ACTGAGAACTAGCCACGTCC 59.111 55.000 0.00 0.00 0.00 4.79
2255 5934 1.466024 CGACTGAGAACTAGCCACGTC 60.466 57.143 0.00 0.00 0.00 4.34
2256 5935 0.522180 CGACTGAGAACTAGCCACGT 59.478 55.000 0.00 0.00 0.00 4.49
2257 5936 0.803117 TCGACTGAGAACTAGCCACG 59.197 55.000 0.00 0.00 0.00 4.94
2258 5937 3.119459 TCAATCGACTGAGAACTAGCCAC 60.119 47.826 0.00 0.00 0.00 5.01
2259 5938 3.089284 TCAATCGACTGAGAACTAGCCA 58.911 45.455 0.00 0.00 0.00 4.75
2260 5939 3.784701 TCAATCGACTGAGAACTAGCC 57.215 47.619 0.00 0.00 0.00 3.93
2261 5940 6.067263 AGTATCAATCGACTGAGAACTAGC 57.933 41.667 11.60 0.00 0.00 3.42
2262 5941 9.440784 GTTAAGTATCAATCGACTGAGAACTAG 57.559 37.037 13.12 0.00 29.75 2.57
2263 5942 9.175312 AGTTAAGTATCAATCGACTGAGAACTA 57.825 33.333 13.12 0.00 29.75 2.24
2264 5943 8.057536 AGTTAAGTATCAATCGACTGAGAACT 57.942 34.615 1.98 5.81 30.62 3.01
2265 5944 9.784680 TTAGTTAAGTATCAATCGACTGAGAAC 57.215 33.333 1.98 3.45 0.00 3.01
2267 5946 9.175312 ACTTAGTTAAGTATCAATCGACTGAGA 57.825 33.333 1.98 0.00 44.18 3.27
2268 5947 9.440784 GACTTAGTTAAGTATCAATCGACTGAG 57.559 37.037 1.98 0.00 45.84 3.35
2269 5948 9.175312 AGACTTAGTTAAGTATCAATCGACTGA 57.825 33.333 0.00 0.00 45.84 3.41
2270 5949 9.790389 AAGACTTAGTTAAGTATCAATCGACTG 57.210 33.333 4.61 0.00 45.84 3.51
2292 5971 9.355215 TCTTGTTAAATCTCAGTCGAATAAGAC 57.645 33.333 0.00 0.00 41.23 3.01
2293 5972 9.355215 GTCTTGTTAAATCTCAGTCGAATAAGA 57.645 33.333 0.00 0.00 0.00 2.10
2294 5973 9.360093 AGTCTTGTTAAATCTCAGTCGAATAAG 57.640 33.333 0.00 0.00 0.00 1.73
2295 5974 9.140286 CAGTCTTGTTAAATCTCAGTCGAATAA 57.860 33.333 0.00 0.00 0.00 1.40
2296 5975 8.304596 ACAGTCTTGTTAAATCTCAGTCGAATA 58.695 33.333 0.00 0.00 32.28 1.75
2297 5976 7.155328 ACAGTCTTGTTAAATCTCAGTCGAAT 58.845 34.615 0.00 0.00 32.28 3.34
2298 5977 6.513180 ACAGTCTTGTTAAATCTCAGTCGAA 58.487 36.000 0.00 0.00 32.28 3.71
2299 5978 6.085555 ACAGTCTTGTTAAATCTCAGTCGA 57.914 37.500 0.00 0.00 32.28 4.20
2300 5979 7.869016 TTACAGTCTTGTTAAATCTCAGTCG 57.131 36.000 0.00 0.00 38.76 4.18
2351 6030 2.414806 CTCGAGCTCTACGTGCCTATA 58.585 52.381 12.85 0.00 0.00 1.31
2394 6073 4.051922 GCTACCCGAAGAAGTATGTCATG 58.948 47.826 0.00 0.00 0.00 3.07
2398 6077 1.761198 GGGCTACCCGAAGAAGTATGT 59.239 52.381 0.00 0.00 32.13 2.29
2426 6141 4.329545 TCCTTCTGTGGTGCCGGC 62.330 66.667 22.73 22.73 0.00 6.13
2429 6144 0.250901 ACATGTCCTTCTGTGGTGCC 60.251 55.000 0.00 0.00 0.00 5.01
2433 6148 2.154462 GGAACACATGTCCTTCTGTGG 58.846 52.381 0.00 0.00 45.53 4.17
2434 6149 2.154462 GGGAACACATGTCCTTCTGTG 58.846 52.381 0.00 1.38 46.42 3.66
2435 6150 2.057922 AGGGAACACATGTCCTTCTGT 58.942 47.619 0.00 0.00 0.00 3.41
2436 6151 2.867109 AGGGAACACATGTCCTTCTG 57.133 50.000 0.00 0.00 0.00 3.02
2437 6152 5.520748 AATTAGGGAACACATGTCCTTCT 57.479 39.130 8.96 0.75 0.00 2.85
2444 6159 5.471456 GCAGAGGATAATTAGGGAACACATG 59.529 44.000 0.00 0.00 0.00 3.21
2449 6164 4.457257 GCATGCAGAGGATAATTAGGGAAC 59.543 45.833 14.21 0.00 0.00 3.62
2465 6180 3.119884 TGAGTCAAATAAACCGCATGCAG 60.120 43.478 19.57 9.32 0.00 4.41
2467 6182 3.485947 TGAGTCAAATAAACCGCATGC 57.514 42.857 7.91 7.91 0.00 4.06
2472 6187 5.966503 TGTTTCGTTTGAGTCAAATAAACCG 59.033 36.000 31.39 24.93 39.05 4.44
2483 6198 6.537301 TGAAAGTATGAGTGTTTCGTTTGAGT 59.463 34.615 0.00 0.00 33.65 3.41
2487 6202 7.316544 ACTTGAAAGTATGAGTGTTTCGTTT 57.683 32.000 0.00 0.00 37.52 3.60
2498 6213 8.402472 ACACGATTTTGAAACTTGAAAGTATGA 58.598 29.630 0.00 0.00 38.57 2.15
2500 6215 9.581099 AAACACGATTTTGAAACTTGAAAGTAT 57.419 25.926 0.00 0.00 38.57 2.12
2527 6242 1.525995 ACCGTTTCAGCAGGTGTGG 60.526 57.895 0.00 0.97 36.81 4.17
2552 6267 4.255833 TCAGCCGAAAATCAAAATGCTT 57.744 36.364 0.00 0.00 0.00 3.91
2566 6281 1.066605 GCTATAGGTTCGTTCAGCCGA 59.933 52.381 1.04 0.00 34.52 5.54
2575 6290 4.820897 TGCCATCAATAGCTATAGGTTCG 58.179 43.478 10.19 0.00 0.00 3.95
2577 6292 5.073691 ACCTTGCCATCAATAGCTATAGGTT 59.926 40.000 10.19 0.44 34.55 3.50
2578 6293 4.599241 ACCTTGCCATCAATAGCTATAGGT 59.401 41.667 12.76 12.76 33.88 3.08
2586 6301 0.664761 CGCCACCTTGCCATCAATAG 59.335 55.000 0.00 0.00 0.00 1.73
2588 6303 2.053865 CCGCCACCTTGCCATCAAT 61.054 57.895 0.00 0.00 0.00 2.57
2616 6331 1.202405 CCACATATTGGCGGAAAAGGC 60.202 52.381 0.00 0.00 39.07 4.35
2627 6342 2.676463 CGCCCCCAAAAACCACATATTG 60.676 50.000 0.00 0.00 0.00 1.90
2629 6344 1.190643 CGCCCCCAAAAACCACATAT 58.809 50.000 0.00 0.00 0.00 1.78
2678 6393 4.377897 GAAGAAAGGACGTGAAAAGGAGA 58.622 43.478 0.00 0.00 0.00 3.71
2681 6396 3.211045 TGGAAGAAAGGACGTGAAAAGG 58.789 45.455 0.00 0.00 0.00 3.11
2682 6397 4.127171 TCTGGAAGAAAGGACGTGAAAAG 58.873 43.478 0.00 0.00 42.31 2.27
2723 6438 5.437060 GGGTCCAAAGAATATGCTTACAGA 58.563 41.667 0.00 0.00 0.00 3.41
2724 6439 4.580580 GGGGTCCAAAGAATATGCTTACAG 59.419 45.833 0.00 0.00 0.00 2.74
2785 6505 2.813907 AGTCACCATCTGAGCTACACT 58.186 47.619 0.00 0.00 0.00 3.55
2786 6506 3.601443 AAGTCACCATCTGAGCTACAC 57.399 47.619 0.00 0.00 0.00 2.90
2787 6507 4.284490 AGAAAAGTCACCATCTGAGCTACA 59.716 41.667 0.00 0.00 0.00 2.74
2788 6508 4.826556 AGAAAAGTCACCATCTGAGCTAC 58.173 43.478 0.00 0.00 0.00 3.58
2789 6509 5.221722 ACAAGAAAAGTCACCATCTGAGCTA 60.222 40.000 0.00 0.00 0.00 3.32
2790 6510 4.070716 CAAGAAAAGTCACCATCTGAGCT 58.929 43.478 0.00 0.00 0.00 4.09
2791 6511 3.817647 ACAAGAAAAGTCACCATCTGAGC 59.182 43.478 0.00 0.00 0.00 4.26
2792 6512 6.204359 CAAACAAGAAAAGTCACCATCTGAG 58.796 40.000 0.00 0.00 0.00 3.35
2793 6513 5.067674 CCAAACAAGAAAAGTCACCATCTGA 59.932 40.000 0.00 0.00 0.00 3.27
2794 6514 5.067674 TCCAAACAAGAAAAGTCACCATCTG 59.932 40.000 0.00 0.00 0.00 2.90
2795 6515 5.200483 TCCAAACAAGAAAAGTCACCATCT 58.800 37.500 0.00 0.00 0.00 2.90
2796 6516 5.514274 TCCAAACAAGAAAAGTCACCATC 57.486 39.130 0.00 0.00 0.00 3.51
2824 6544 4.721776 ACTCTAGGCTTGAATTATGGTGGA 59.278 41.667 0.00 0.00 0.00 4.02
2825 6545 5.041191 ACTCTAGGCTTGAATTATGGTGG 57.959 43.478 0.00 0.00 0.00 4.61
2855 6575 1.670791 TCAAGGAAAACGTGACCACC 58.329 50.000 0.00 0.00 32.51 4.61
2881 6601 4.244425 AGAATATCGACGAATGACCTGG 57.756 45.455 0.00 0.00 0.00 4.45
2888 6608 3.182572 GCAAGCGAAGAATATCGACGAAT 59.817 43.478 0.00 0.00 45.48 3.34
2892 6612 3.060873 GTGAGCAAGCGAAGAATATCGAC 60.061 47.826 0.24 0.00 45.48 4.20
2901 6621 1.284657 ATGATCGTGAGCAAGCGAAG 58.715 50.000 0.00 0.00 40.61 3.79
2908 6628 4.371786 GAACCATAGAATGATCGTGAGCA 58.628 43.478 0.00 0.00 0.00 4.26
2909 6629 3.426859 CGAACCATAGAATGATCGTGAGC 59.573 47.826 0.00 0.00 35.86 4.26
2913 6633 3.643763 GAGCGAACCATAGAATGATCGT 58.356 45.455 13.00 0.00 39.73 3.73
2919 6639 1.600663 CGAGCGAGCGAACCATAGAAT 60.601 52.381 0.00 0.00 0.00 2.40
2939 6659 0.787183 GGAATGAGCTAATCGCGAGC 59.213 55.000 16.66 13.26 45.59 5.03
2941 6661 2.100749 TGAAGGAATGAGCTAATCGCGA 59.899 45.455 13.09 13.09 45.59 5.87
2942 6662 2.473816 TGAAGGAATGAGCTAATCGCG 58.526 47.619 0.00 0.00 45.59 5.87
2943 6663 3.462021 ACTGAAGGAATGAGCTAATCGC 58.538 45.455 0.00 0.00 39.57 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.