Multiple sequence alignment - TraesCS5D01G223800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G223800 chr5D 100.000 5090 0 0 1 5090 331571483 331576572 0.000000e+00 9400.0
1 TraesCS5D01G223800 chr5D 87.943 282 24 6 1671 1944 564884602 564884323 1.770000e-84 324.0
2 TraesCS5D01G223800 chr5A 94.448 1621 52 13 2802 4399 432230521 432232126 0.000000e+00 2460.0
3 TraesCS5D01G223800 chr5A 91.255 1578 80 15 1235 2768 432228810 432230373 0.000000e+00 2097.0
4 TraesCS5D01G223800 chr5A 90.023 441 10 12 744 1182 432228389 432228797 1.610000e-149 540.0
5 TraesCS5D01G223800 chr5A 84.321 574 51 15 3 569 432160421 432160962 4.510000e-145 525.0
6 TraesCS5D01G223800 chr5A 93.165 278 13 4 4634 4905 432232587 432232864 2.210000e-108 403.0
7 TraesCS5D01G223800 chr5A 88.489 278 24 6 1671 1941 69188805 69189081 3.800000e-86 329.0
8 TraesCS5D01G223800 chr5A 87.814 279 24 8 1671 1941 69190856 69191132 8.220000e-83 318.0
9 TraesCS5D01G223800 chr5A 92.437 119 8 1 4397 4514 505594259 505594141 8.760000e-38 169.0
10 TraesCS5D01G223800 chr5A 98.077 52 1 0 581 632 432227488 432227539 1.950000e-14 91.6
11 TraesCS5D01G223800 chr5A 100.000 32 0 0 2767 2798 432230462 432230493 5.500000e-05 60.2
12 TraesCS5D01G223800 chr5B 93.759 1458 46 14 2044 3458 387365146 387366601 0.000000e+00 2146.0
13 TraesCS5D01G223800 chr5B 91.683 1515 68 19 520 2019 387363477 387364948 0.000000e+00 2047.0
14 TraesCS5D01G223800 chr5B 93.776 948 41 8 3443 4374 387366788 387367733 0.000000e+00 1408.0
15 TraesCS5D01G223800 chr5B 92.500 120 8 1 4396 4514 472739666 472739547 2.440000e-38 171.0
16 TraesCS5D01G223800 chr5B 86.486 148 16 4 4762 4905 387369632 387369779 5.270000e-35 159.0
17 TraesCS5D01G223800 chr5B 97.778 90 2 0 4637 4726 387369542 387369631 6.820000e-34 156.0
18 TraesCS5D01G223800 chr5B 93.939 66 4 0 4570 4635 387369407 387369472 3.240000e-17 100.0
19 TraesCS5D01G223800 chr7D 88.530 279 22 6 1671 1941 416421280 416421556 3.800000e-86 329.0
20 TraesCS5D01G223800 chr7D 94.068 118 7 0 395 512 381878776 381878659 4.050000e-41 180.0
21 TraesCS5D01G223800 chr7D 94.068 118 7 0 395 512 606832526 606832643 4.050000e-41 180.0
22 TraesCS5D01G223800 chr7D 93.220 118 8 0 395 512 203526944 203526827 1.880000e-39 174.0
23 TraesCS5D01G223800 chr7D 93.220 118 8 0 395 512 307178811 307178694 1.880000e-39 174.0
24 TraesCS5D01G223800 chr7D 93.162 117 7 1 4397 4512 240833782 240833898 2.440000e-38 171.0
25 TraesCS5D01G223800 chr7D 76.812 138 25 2 7 143 119037237 119037368 2.540000e-08 71.3
26 TraesCS5D01G223800 chr6A 88.530 279 21 10 1671 1941 2982615 2982890 1.370000e-85 327.0
27 TraesCS5D01G223800 chr6A 92.623 122 7 2 4397 4516 448220792 448220913 1.880000e-39 174.0
28 TraesCS5D01G223800 chr2D 88.028 284 22 6 1671 1944 647147292 647147011 4.910000e-85 326.0
29 TraesCS5D01G223800 chr2D 86.081 273 29 3 1046 1318 254331147 254331410 8.340000e-73 285.0
30 TraesCS5D01G223800 chr2D 93.220 118 8 0 395 512 635022339 635022456 1.880000e-39 174.0
31 TraesCS5D01G223800 chr2D 100.000 28 0 0 180 207 552067189 552067162 9.000000e-03 52.8
32 TraesCS5D01G223800 chr6B 88.561 271 20 5 1046 1316 334482775 334482516 8.220000e-83 318.0
33 TraesCS5D01G223800 chr4A 87.455 279 25 7 1671 1941 375820502 375820778 3.830000e-81 313.0
34 TraesCS5D01G223800 chr4A 93.220 118 7 1 4396 4512 55387667 55387784 6.780000e-39 172.0
35 TraesCS5D01G223800 chr6D 94.068 118 7 0 395 512 425976961 425977078 4.050000e-41 180.0
36 TraesCS5D01G223800 chr6D 97.727 44 1 0 353 396 108502897 108502854 5.460000e-10 76.8
37 TraesCS5D01G223800 chr4D 94.068 118 7 0 395 512 123727966 123727849 4.050000e-41 180.0
38 TraesCS5D01G223800 chrUn 93.220 118 8 0 395 512 381708541 381708424 1.880000e-39 174.0
39 TraesCS5D01G223800 chrUn 97.727 44 1 0 353 396 231548498 231548541 5.460000e-10 76.8
40 TraesCS5D01G223800 chrUn 97.727 44 1 0 353 396 323806321 323806364 5.460000e-10 76.8
41 TraesCS5D01G223800 chrUn 97.727 44 1 0 353 396 350576864 350576907 5.460000e-10 76.8
42 TraesCS5D01G223800 chrUn 97.727 44 1 0 353 396 358548973 358548930 5.460000e-10 76.8
43 TraesCS5D01G223800 chrUn 97.727 44 1 0 353 396 395602184 395602141 5.460000e-10 76.8
44 TraesCS5D01G223800 chrUn 97.727 44 1 0 353 396 448134744 448134787 5.460000e-10 76.8
45 TraesCS5D01G223800 chr2A 93.277 119 7 1 4397 4514 429716170 429716288 1.880000e-39 174.0
46 TraesCS5D01G223800 chr7B 90.076 131 10 3 4391 4519 254096736 254096607 3.150000e-37 167.0
47 TraesCS5D01G223800 chr7A 91.129 124 10 1 4390 4512 140983034 140983157 3.150000e-37 167.0
48 TraesCS5D01G223800 chr7A 91.129 124 10 1 4390 4512 141260204 141260327 3.150000e-37 167.0
49 TraesCS5D01G223800 chr2B 78.322 143 23 3 6 147 96006034 96006169 9.080000e-13 86.1
50 TraesCS5D01G223800 chr2B 77.083 144 23 5 6 147 95989364 95989499 1.970000e-09 75.0
51 TraesCS5D01G223800 chr2B 77.083 144 23 5 6 147 95997670 95997805 1.970000e-09 75.0
52 TraesCS5D01G223800 chr2B 76.224 143 26 3 6 147 95956276 95956411 9.140000e-08 69.4
53 TraesCS5D01G223800 chr2B 74.825 143 28 3 6 147 96047956 96048091 1.980000e-04 58.4
54 TraesCS5D01G223800 chr1D 97.727 44 1 0 353 396 350960067 350960110 5.460000e-10 76.8
55 TraesCS5D01G223800 chr1A 97.727 44 1 0 353 396 68930260 68930217 5.460000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G223800 chr5D 331571483 331576572 5089 False 9400.000000 9400 100.000000 1 5090 1 chr5D.!!$F1 5089
1 TraesCS5D01G223800 chr5A 432227488 432232864 5376 False 941.966667 2460 94.494667 581 4905 6 chr5A.!!$F3 4324
2 TraesCS5D01G223800 chr5A 432160421 432160962 541 False 525.000000 525 84.321000 3 569 1 chr5A.!!$F1 566
3 TraesCS5D01G223800 chr5A 69188805 69191132 2327 False 323.500000 329 88.151500 1671 1941 2 chr5A.!!$F2 270
4 TraesCS5D01G223800 chr5B 387363477 387369779 6302 False 1002.666667 2146 92.903500 520 4905 6 chr5B.!!$F1 4385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 1621 0.171455 CACCACCAGAGTCTAGACGC 59.829 60.000 17.90 17.90 36.20 5.19 F
2041 3015 1.009829 GGCCATGAACAGTCGTGATC 58.990 55.000 0.00 0.00 42.54 2.92 F
3738 5067 1.077212 CATTGCTAGGCTGGGCAGT 60.077 57.895 14.58 10.62 39.68 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 3708 1.679139 CTGCCAGAACACAACCAGAA 58.321 50.0 0.00 0.00 0.00 3.02 R
3921 5253 0.394216 CCTGCGGGATGACCATCAAA 60.394 55.0 5.28 0.00 39.54 2.69 R
4914 8188 0.031721 CCGCGGACTGATAAGGTACC 59.968 60.0 24.07 2.73 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.603975 AGAAGCGGCAACAGAGGAAC 60.604 55.000 1.45 0.00 0.00 3.62
79 80 1.613836 CCCTTGCCCAAGAGCATATC 58.386 55.000 9.50 0.00 43.64 1.63
84 85 1.757306 CCCAAGAGCATATCGGGCT 59.243 57.895 0.00 0.00 46.07 5.19
86 87 1.347707 CCCAAGAGCATATCGGGCTAA 59.652 52.381 0.00 0.00 42.78 3.09
100 101 3.118454 CTAACCGTGCTGTGGCCG 61.118 66.667 0.00 0.00 37.74 6.13
156 157 2.579207 TCGACGGGTCAATGATCTTC 57.421 50.000 0.00 0.00 0.00 2.87
207 212 4.743493 CCAAATTTTTGTAGTCCGATGGG 58.257 43.478 2.63 0.00 36.45 4.00
214 219 1.760613 TGTAGTCCGATGGGAATGTCC 59.239 52.381 7.00 0.00 46.08 4.02
219 224 2.632996 GTCCGATGGGAATGTCCTGATA 59.367 50.000 0.00 0.00 46.08 2.15
227 232 4.777896 TGGGAATGTCCTGATATAGTAGGC 59.222 45.833 1.11 0.00 36.57 3.93
232 237 3.181437 TGTCCTGATATAGTAGGCGGACA 60.181 47.826 4.28 4.28 44.96 4.02
233 238 3.825014 GTCCTGATATAGTAGGCGGACAA 59.175 47.826 0.00 0.00 39.30 3.18
243 248 4.391155 AGTAGGCGGACAATGTGTTTTTA 58.609 39.130 0.00 0.00 0.00 1.52
244 249 5.007682 AGTAGGCGGACAATGTGTTTTTAT 58.992 37.500 0.00 0.00 0.00 1.40
245 250 4.434713 AGGCGGACAATGTGTTTTTATC 57.565 40.909 0.00 0.00 0.00 1.75
286 292 7.596494 ACATGTCTTTGTATGAATTTGAGGTG 58.404 34.615 0.00 0.00 0.00 4.00
288 294 8.729756 CATGTCTTTGTATGAATTTGAGGTGTA 58.270 33.333 0.00 0.00 0.00 2.90
290 296 7.936847 TGTCTTTGTATGAATTTGAGGTGTACT 59.063 33.333 0.00 0.00 0.00 2.73
305 311 7.277396 TGAGGTGTACTATTAATTAAGGTGCC 58.723 38.462 13.51 12.35 0.00 5.01
307 313 6.159046 AGGTGTACTATTAATTAAGGTGCCCA 59.841 38.462 18.63 11.24 0.00 5.36
308 314 6.485648 GGTGTACTATTAATTAAGGTGCCCAG 59.514 42.308 13.51 2.54 0.00 4.45
335 341 6.183360 TGTGCAAAGAAAAATTTAAGGTGTGC 60.183 34.615 0.00 0.00 0.00 4.57
339 345 3.006430 AGAAAAATTTAAGGTGTGCCCGG 59.994 43.478 0.00 0.00 38.74 5.73
342 348 0.402504 ATTTAAGGTGTGCCCGGTGA 59.597 50.000 0.00 0.00 38.74 4.02
361 371 4.477975 CAGGGCGGACGAGACGAC 62.478 72.222 0.00 0.00 39.02 4.34
364 374 4.176851 GGCGGACGAGACGACCTC 62.177 72.222 10.22 3.20 39.29 3.85
374 384 2.992114 ACGACCTCGGCTCAAGCT 60.992 61.111 1.46 0.00 44.95 3.74
386 396 2.669569 CAAGCTGACCCCACACCG 60.670 66.667 0.00 0.00 0.00 4.94
453 463 1.414919 GGCCCACGATACCAATACTGA 59.585 52.381 0.00 0.00 0.00 3.41
471 481 3.755378 ACTGAAGATTTGCCTTAGCTGTG 59.245 43.478 0.00 0.00 40.80 3.66
489 499 4.786609 GCTGTGGTTCAAAGAAGTTCTTCG 60.787 45.833 18.28 7.94 35.27 3.79
497 507 1.897560 AGAAGTTCTTCGGCTTTGGG 58.102 50.000 0.00 0.00 0.00 4.12
527 538 4.097589 CGAACCTTCGGGAGAGTTTATAGT 59.902 45.833 0.00 0.00 46.30 2.12
597 614 2.195567 GCCTTCCTGCACTGCAACA 61.196 57.895 4.99 0.00 38.41 3.33
644 661 8.970691 TCTTTTGTAATACGTGTACTTACCTC 57.029 34.615 0.00 0.00 0.00 3.85
740 1395 2.742372 GTCCATTCGCACGCCACT 60.742 61.111 0.00 0.00 0.00 4.00
742 1397 3.853330 CCATTCGCACGCCACTCG 61.853 66.667 0.00 0.00 45.38 4.18
788 1568 2.686106 TAAGCCACCGTCCCTCCC 60.686 66.667 0.00 0.00 0.00 4.30
828 1608 0.610687 CTCTCCTCCAAGACACCACC 59.389 60.000 0.00 0.00 0.00 4.61
830 1610 0.322975 CTCCTCCAAGACACCACCAG 59.677 60.000 0.00 0.00 0.00 4.00
832 1612 0.322975 CCTCCAAGACACCACCAGAG 59.677 60.000 0.00 0.00 0.00 3.35
834 1614 1.001406 CTCCAAGACACCACCAGAGTC 59.999 57.143 0.00 0.00 0.00 3.36
835 1615 1.051812 CCAAGACACCACCAGAGTCT 58.948 55.000 0.00 0.00 43.98 3.24
838 1618 3.157881 CAAGACACCACCAGAGTCTAGA 58.842 50.000 0.00 0.00 41.45 2.43
839 1619 2.797786 AGACACCACCAGAGTCTAGAC 58.202 52.381 15.41 15.41 40.59 2.59
840 1620 1.469308 GACACCACCAGAGTCTAGACG 59.531 57.143 17.07 5.64 36.20 4.18
841 1621 0.171455 CACCACCAGAGTCTAGACGC 59.829 60.000 17.90 17.90 36.20 5.19
843 1623 1.226435 CACCAGAGTCTAGACGCGC 60.226 63.158 19.19 12.03 36.21 6.86
911 1692 2.350293 GCACGCATCATACACACACAAA 60.350 45.455 0.00 0.00 0.00 2.83
920 1701 1.587613 CACACACAAAAACCGCGGG 60.588 57.895 31.76 13.93 0.00 6.13
1224 2006 3.341629 ACCTGTCATGGGGCTGGG 61.342 66.667 0.00 0.00 0.00 4.45
1225 2007 3.016971 CCTGTCATGGGGCTGGGA 61.017 66.667 0.00 0.00 0.00 4.37
1226 2008 2.615465 CCTGTCATGGGGCTGGGAA 61.615 63.158 0.00 0.00 0.00 3.97
1227 2009 1.383799 CTGTCATGGGGCTGGGAAA 59.616 57.895 0.00 0.00 0.00 3.13
1247 2029 5.277828 GGAAATATGTGCGGGAGATTGTTAC 60.278 44.000 0.00 0.00 0.00 2.50
1410 2207 5.546621 ATTAGCAATAAGACTTCCGCCTA 57.453 39.130 0.00 0.00 0.00 3.93
1430 2227 7.148137 CCGCCTATTTTGGTTAAATCAACTAGT 60.148 37.037 0.00 0.00 37.60 2.57
1526 2330 3.330267 AGCAGCAGAAAGTGTTAGTAGC 58.670 45.455 0.00 0.00 0.00 3.58
1536 2340 8.396390 CAGAAAGTGTTAGTAGCGTCTCTATTA 58.604 37.037 0.00 0.00 0.00 0.98
1598 2402 6.003950 ACCTTATTTGTTCTGCTGAAGCTAA 58.996 36.000 6.24 5.94 42.66 3.09
1666 2470 7.935405 AGGTGGACCTTGGAAATAACTTTATA 58.065 34.615 0.00 0.00 46.09 0.98
1667 2471 8.053355 AGGTGGACCTTGGAAATAACTTTATAG 58.947 37.037 0.00 0.00 46.09 1.31
1668 2472 7.832685 GGTGGACCTTGGAAATAACTTTATAGT 59.167 37.037 0.00 0.00 35.68 2.12
1669 2473 9.239551 GTGGACCTTGGAAATAACTTTATAGTT 57.760 33.333 3.97 3.97 46.18 2.24
1670 2474 9.816787 TGGACCTTGGAAATAACTTTATAGTTT 57.183 29.630 3.82 0.00 41.85 2.66
1708 2512 5.343249 CAAGCCTAAATCATGTTAACCAGC 58.657 41.667 2.48 0.00 0.00 4.85
1880 2692 6.820335 TGTGATCATGGGTCTAATGAGTTAG 58.180 40.000 0.00 0.00 37.46 2.34
1925 2737 7.827236 ACTAAAATACCATCGAAATGAACAGGA 59.173 33.333 0.00 0.00 34.61 3.86
1982 2794 2.242043 CTGTGCCCTTTGACTTCCATT 58.758 47.619 0.00 0.00 0.00 3.16
2036 3010 5.239306 ACAAATATATGGCCATGAACAGTCG 59.761 40.000 29.04 11.73 0.00 4.18
2037 3011 4.623932 ATATATGGCCATGAACAGTCGT 57.376 40.909 29.04 0.13 0.00 4.34
2041 3015 1.009829 GGCCATGAACAGTCGTGATC 58.990 55.000 0.00 0.00 42.54 2.92
2084 3069 3.072211 GGAAGTAAAAGACCGGGAGTTG 58.928 50.000 6.32 0.00 0.00 3.16
2127 3112 3.541996 TTTGCCATAGAGAGCATTCGA 57.458 42.857 0.00 0.00 39.11 3.71
2131 3116 3.004839 TGCCATAGAGAGCATTCGACTAC 59.995 47.826 0.00 0.00 33.08 2.73
2210 3211 3.420893 TGGAAATGTTCTCATGGACCAC 58.579 45.455 0.00 0.00 34.19 4.16
2266 3267 5.049954 GCGAGCCATGTTATTATTTTACGGA 60.050 40.000 0.00 0.00 0.00 4.69
2705 3708 6.186957 TGCTGGTAATTCCTGTATTGATTGT 58.813 36.000 0.00 0.00 37.45 2.71
2742 3745 4.398988 TGGCAGCGATGTCAATAAGAATTT 59.601 37.500 5.01 0.00 0.00 1.82
2822 3940 5.527951 TGTATAAGCCTTTTTGTGTGCTTG 58.472 37.500 5.89 0.00 43.43 4.01
2833 3951 2.095461 TGTGTGCTTGCTTTGGTTACA 58.905 42.857 0.00 0.00 0.00 2.41
2930 4048 5.420104 CACTAGATTCCTTTTTGAAGGCCAT 59.580 40.000 5.01 0.00 39.80 4.40
3099 4217 8.856153 TGCTATAATGAACTTCTTAAACACCA 57.144 30.769 0.00 0.00 0.00 4.17
3163 4281 2.029623 GCAGGTAGGTTCACGAGGATA 58.970 52.381 0.00 0.00 0.00 2.59
3191 4309 3.415457 TTGGTGCCCATTTTCAAATCC 57.585 42.857 0.00 0.00 31.53 3.01
3298 4416 6.211587 TGGCGTTCTAAGTGCTATAGTAAA 57.788 37.500 0.84 0.00 0.00 2.01
3433 4558 5.680408 GCTCAGCAATGCTTTGATGGATTTA 60.680 40.000 24.82 9.06 46.69 1.40
3437 4562 6.984474 CAGCAATGCTTTGATGGATTTAGAAT 59.016 34.615 19.65 0.00 43.79 2.40
3439 4564 7.494625 AGCAATGCTTTGATGGATTTAGAATTG 59.505 33.333 15.97 0.00 33.89 2.32
3458 4583 6.318144 AGAATTGTGCTATCTTTGATGACCTG 59.682 38.462 0.00 0.00 0.00 4.00
3506 4833 1.473258 TTGCTAAAATGGGATGCGCT 58.527 45.000 9.73 0.00 0.00 5.92
3514 4841 3.275617 AATGGGATGCGCTAGTACAAA 57.724 42.857 9.73 0.00 0.00 2.83
3525 4852 6.559810 TGCGCTAGTACAAATAATTTGCAAT 58.440 32.000 9.73 0.00 44.39 3.56
3577 4906 2.093306 TGGAGAGTATTGTGCGGTTG 57.907 50.000 0.00 0.00 0.00 3.77
3646 4975 4.966168 TCTACTATTGCCAGGGTATCACAA 59.034 41.667 0.00 0.00 0.00 3.33
3647 4976 4.796110 ACTATTGCCAGGGTATCACAAT 57.204 40.909 0.00 0.00 35.31 2.71
3738 5067 1.077212 CATTGCTAGGCTGGGCAGT 60.077 57.895 14.58 10.62 39.68 4.40
3796 5125 1.911357 TGGATGACAAGATGCAGGAGT 59.089 47.619 0.00 0.00 0.00 3.85
3999 5331 3.203442 ACGGACGACCATGCGTAT 58.797 55.556 4.48 0.00 45.45 3.06
4105 5437 6.371595 ACATCTGATATCTGAAGGGGAATC 57.628 41.667 15.30 0.00 0.00 2.52
4164 5496 2.355132 TCTTCTTATCTGCTCGGTCGTC 59.645 50.000 0.00 0.00 0.00 4.20
4232 5571 2.441750 TCCCTAGTTTGTCACCAGCTTT 59.558 45.455 0.00 0.00 0.00 3.51
4233 5572 3.649023 TCCCTAGTTTGTCACCAGCTTTA 59.351 43.478 0.00 0.00 0.00 1.85
4234 5573 4.288626 TCCCTAGTTTGTCACCAGCTTTAT 59.711 41.667 0.00 0.00 0.00 1.40
4235 5574 4.636206 CCCTAGTTTGTCACCAGCTTTATC 59.364 45.833 0.00 0.00 0.00 1.75
4237 5576 5.705441 CCTAGTTTGTCACCAGCTTTATCAA 59.295 40.000 0.00 0.00 0.00 2.57
4239 5578 4.278419 AGTTTGTCACCAGCTTTATCAACC 59.722 41.667 0.00 0.00 0.00 3.77
4241 5580 2.092323 GTCACCAGCTTTATCAACCCC 58.908 52.381 0.00 0.00 0.00 4.95
4334 5683 2.305928 TGCATAACTGTGGCAAACTGT 58.694 42.857 0.00 0.00 42.25 3.55
4343 5692 2.877786 TGTGGCAAACTGTGTCATGTAG 59.122 45.455 0.00 0.00 45.54 2.74
4369 5718 2.829120 CCTTTCCTTTTTGCGGGGAATA 59.171 45.455 0.00 0.00 38.67 1.75
4375 5724 3.488553 CCTTTTTGCGGGGAATACGATTC 60.489 47.826 0.00 0.00 0.00 2.52
4405 5758 9.131791 TGAATTTGCTTAAATATTACTCCCTCC 57.868 33.333 0.00 0.00 0.00 4.30
4406 5759 7.745620 ATTTGCTTAAATATTACTCCCTCCG 57.254 36.000 0.00 0.00 0.00 4.63
4407 5760 5.881923 TGCTTAAATATTACTCCCTCCGT 57.118 39.130 0.00 0.00 0.00 4.69
4408 5761 5.850614 TGCTTAAATATTACTCCCTCCGTC 58.149 41.667 0.00 0.00 0.00 4.79
4409 5762 5.601313 TGCTTAAATATTACTCCCTCCGTCT 59.399 40.000 0.00 0.00 0.00 4.18
4410 5763 5.927115 GCTTAAATATTACTCCCTCCGTCTG 59.073 44.000 0.00 0.00 0.00 3.51
4411 5764 4.957684 AAATATTACTCCCTCCGTCTGG 57.042 45.455 0.00 0.00 0.00 3.86
4412 5765 3.897657 ATATTACTCCCTCCGTCTGGA 57.102 47.619 0.00 0.00 43.88 3.86
4413 5766 2.544844 ATTACTCCCTCCGTCTGGAA 57.455 50.000 0.00 0.00 45.87 3.53
4414 5767 2.544844 TTACTCCCTCCGTCTGGAAT 57.455 50.000 0.00 0.00 45.87 3.01
4415 5768 3.675348 TTACTCCCTCCGTCTGGAATA 57.325 47.619 0.00 0.00 45.87 1.75
4416 5769 1.777941 ACTCCCTCCGTCTGGAATAC 58.222 55.000 0.00 0.00 45.87 1.89
4417 5770 1.288335 ACTCCCTCCGTCTGGAATACT 59.712 52.381 0.00 0.00 45.87 2.12
4418 5771 2.292323 ACTCCCTCCGTCTGGAATACTT 60.292 50.000 0.00 0.00 45.87 2.24
4419 5772 2.101582 CTCCCTCCGTCTGGAATACTTG 59.898 54.545 0.00 0.00 45.87 3.16
4420 5773 1.831736 CCCTCCGTCTGGAATACTTGT 59.168 52.381 0.00 0.00 45.87 3.16
4421 5774 2.159085 CCCTCCGTCTGGAATACTTGTC 60.159 54.545 0.00 0.00 45.87 3.18
4422 5775 2.496070 CCTCCGTCTGGAATACTTGTCA 59.504 50.000 0.00 0.00 45.87 3.58
4423 5776 3.133003 CCTCCGTCTGGAATACTTGTCAT 59.867 47.826 0.00 0.00 45.87 3.06
4424 5777 4.341235 CCTCCGTCTGGAATACTTGTCATA 59.659 45.833 0.00 0.00 45.87 2.15
4425 5778 5.163447 CCTCCGTCTGGAATACTTGTCATAA 60.163 44.000 0.00 0.00 45.87 1.90
4426 5779 6.288941 TCCGTCTGGAATACTTGTCATAAA 57.711 37.500 0.00 0.00 42.85 1.40
4427 5780 6.703319 TCCGTCTGGAATACTTGTCATAAAA 58.297 36.000 0.00 0.00 42.85 1.52
4428 5781 7.162761 TCCGTCTGGAATACTTGTCATAAAAA 58.837 34.615 0.00 0.00 42.85 1.94
4429 5782 7.827236 TCCGTCTGGAATACTTGTCATAAAAAT 59.173 33.333 0.00 0.00 42.85 1.82
4430 5783 7.910162 CCGTCTGGAATACTTGTCATAAAAATG 59.090 37.037 0.00 0.00 37.49 2.32
4431 5784 7.910162 CGTCTGGAATACTTGTCATAAAAATGG 59.090 37.037 0.00 0.00 0.00 3.16
4432 5785 8.956426 GTCTGGAATACTTGTCATAAAAATGGA 58.044 33.333 0.00 0.00 0.00 3.41
4433 5786 9.699410 TCTGGAATACTTGTCATAAAAATGGAT 57.301 29.630 0.00 0.00 0.00 3.41
4484 5837 6.522625 ACATCTAGATACATCCATTCCTCG 57.477 41.667 4.54 0.00 0.00 4.63
4485 5838 5.420421 ACATCTAGATACATCCATTCCTCGG 59.580 44.000 4.54 0.00 0.00 4.63
4486 5839 5.256806 TCTAGATACATCCATTCCTCGGA 57.743 43.478 0.00 0.00 36.84 4.55
4487 5840 5.832221 TCTAGATACATCCATTCCTCGGAT 58.168 41.667 0.00 0.00 44.35 4.18
4488 5841 6.970191 TCTAGATACATCCATTCCTCGGATA 58.030 40.000 0.00 0.00 41.48 2.59
4489 5842 7.410991 TCTAGATACATCCATTCCTCGGATAA 58.589 38.462 0.00 0.00 41.48 1.75
4490 5843 6.537453 AGATACATCCATTCCTCGGATAAG 57.463 41.667 0.00 0.00 41.48 1.73
4491 5844 6.019748 AGATACATCCATTCCTCGGATAAGT 58.980 40.000 0.00 0.00 41.48 2.24
4492 5845 7.182760 AGATACATCCATTCCTCGGATAAGTA 58.817 38.462 0.00 0.00 41.48 2.24
4493 5846 7.841729 AGATACATCCATTCCTCGGATAAGTAT 59.158 37.037 0.00 0.00 41.48 2.12
4494 5847 6.688073 ACATCCATTCCTCGGATAAGTATT 57.312 37.500 0.00 0.00 41.48 1.89
4495 5848 7.079451 ACATCCATTCCTCGGATAAGTATTT 57.921 36.000 0.00 0.00 41.48 1.40
4496 5849 7.162082 ACATCCATTCCTCGGATAAGTATTTC 58.838 38.462 0.00 0.00 41.48 2.17
4497 5850 6.110411 TCCATTCCTCGGATAAGTATTTCC 57.890 41.667 0.00 0.00 0.00 3.13
4503 5856 1.804601 GGATAAGTATTTCCGGGCGG 58.195 55.000 0.00 0.00 0.00 6.13
4504 5857 1.345415 GGATAAGTATTTCCGGGCGGA 59.655 52.381 0.00 0.00 43.52 5.54
4505 5858 2.612221 GGATAAGTATTTCCGGGCGGAG 60.612 54.545 0.00 0.00 46.06 4.63
4506 5859 0.754472 TAAGTATTTCCGGGCGGAGG 59.246 55.000 0.00 0.00 46.06 4.30
4507 5860 1.979619 AAGTATTTCCGGGCGGAGGG 61.980 60.000 0.00 0.00 46.06 4.30
4508 5861 2.041715 TATTTCCGGGCGGAGGGA 60.042 61.111 0.00 0.00 46.06 4.20
4509 5862 2.138179 TATTTCCGGGCGGAGGGAG 61.138 63.158 0.00 0.00 46.06 4.30
4510 5863 2.884179 TATTTCCGGGCGGAGGGAGT 62.884 60.000 0.00 0.00 46.06 3.85
4511 5864 2.884179 ATTTCCGGGCGGAGGGAGTA 62.884 60.000 0.00 0.00 46.06 2.59
4512 5865 4.828296 TCCGGGCGGAGGGAGTAC 62.828 72.222 0.00 0.00 39.76 2.73
4514 5867 3.834799 CGGGCGGAGGGAGTACAC 61.835 72.222 0.00 0.00 0.00 2.90
4515 5868 3.834799 GGGCGGAGGGAGTACACG 61.835 72.222 0.00 0.00 0.00 4.49
4516 5869 3.834799 GGCGGAGGGAGTACACGG 61.835 72.222 0.00 0.00 0.00 4.94
4517 5870 2.753043 GCGGAGGGAGTACACGGA 60.753 66.667 0.00 0.00 0.00 4.69
4518 5871 2.125961 GCGGAGGGAGTACACGGAT 61.126 63.158 0.00 0.00 0.00 4.18
4519 5872 0.820891 GCGGAGGGAGTACACGGATA 60.821 60.000 0.00 0.00 0.00 2.59
4520 5873 1.236628 CGGAGGGAGTACACGGATAG 58.763 60.000 0.00 0.00 0.00 2.08
4525 5878 3.896272 GAGGGAGTACACGGATAGGAATT 59.104 47.826 0.00 0.00 0.00 2.17
4537 5890 5.721960 ACGGATAGGAATTATAGTGCTCCAT 59.278 40.000 0.00 0.00 0.00 3.41
4558 5911 6.710295 TCCATTGGTATTTTAGACGGATGATG 59.290 38.462 1.86 0.00 0.00 3.07
4565 7493 7.604164 GGTATTTTAGACGGATGATGATGATGT 59.396 37.037 0.00 0.00 0.00 3.06
4566 7494 6.849588 TTTTAGACGGATGATGATGATGTG 57.150 37.500 0.00 0.00 0.00 3.21
4609 7550 1.473965 GCCAGATCATCGAGCCTTTGA 60.474 52.381 0.00 0.00 0.00 2.69
4774 8044 2.031258 TTGGCGAGAGTTGTTTGTCA 57.969 45.000 0.00 0.00 0.00 3.58
4782 8052 5.641709 CGAGAGTTGTTTGTCATAGAGCTA 58.358 41.667 0.00 0.00 0.00 3.32
4783 8053 5.741510 CGAGAGTTGTTTGTCATAGAGCTAG 59.258 44.000 0.00 0.00 0.00 3.42
4784 8054 6.597832 AGAGTTGTTTGTCATAGAGCTAGT 57.402 37.500 0.00 0.00 0.00 2.57
4785 8055 6.393990 AGAGTTGTTTGTCATAGAGCTAGTG 58.606 40.000 0.00 0.00 0.00 2.74
4786 8056 6.209589 AGAGTTGTTTGTCATAGAGCTAGTGA 59.790 38.462 0.00 0.00 0.00 3.41
4787 8057 6.940739 AGTTGTTTGTCATAGAGCTAGTGAT 58.059 36.000 0.00 0.00 0.00 3.06
4788 8058 8.067751 AGTTGTTTGTCATAGAGCTAGTGATA 57.932 34.615 0.00 0.00 0.00 2.15
4789 8059 7.976734 AGTTGTTTGTCATAGAGCTAGTGATAC 59.023 37.037 0.00 0.00 0.00 2.24
4790 8060 6.495706 TGTTTGTCATAGAGCTAGTGATACG 58.504 40.000 0.00 0.00 0.00 3.06
4791 8061 6.095021 TGTTTGTCATAGAGCTAGTGATACGT 59.905 38.462 0.00 0.00 0.00 3.57
4793 8063 6.301687 TGTCATAGAGCTAGTGATACGTTC 57.698 41.667 0.00 0.00 0.00 3.95
4868 8142 6.638096 TCTTGATTGAGACAAGCATCAAAA 57.362 33.333 3.43 0.00 42.76 2.44
4886 8160 5.849510 TCAAAACTAAGGACATCTTCGACA 58.150 37.500 0.00 0.00 36.93 4.35
4887 8161 6.285224 TCAAAACTAAGGACATCTTCGACAA 58.715 36.000 0.00 0.00 36.93 3.18
4905 8179 0.106918 AACGACCCTCAAAACAGCCA 60.107 50.000 0.00 0.00 0.00 4.75
4906 8180 0.110486 ACGACCCTCAAAACAGCCAT 59.890 50.000 0.00 0.00 0.00 4.40
4907 8181 0.804989 CGACCCTCAAAACAGCCATC 59.195 55.000 0.00 0.00 0.00 3.51
4908 8182 1.177401 GACCCTCAAAACAGCCATCC 58.823 55.000 0.00 0.00 0.00 3.51
4909 8183 0.609131 ACCCTCAAAACAGCCATCCG 60.609 55.000 0.00 0.00 0.00 4.18
4910 8184 0.322456 CCCTCAAAACAGCCATCCGA 60.322 55.000 0.00 0.00 0.00 4.55
4911 8185 0.804989 CCTCAAAACAGCCATCCGAC 59.195 55.000 0.00 0.00 0.00 4.79
4912 8186 0.443869 CTCAAAACAGCCATCCGACG 59.556 55.000 0.00 0.00 0.00 5.12
4913 8187 0.250124 TCAAAACAGCCATCCGACGT 60.250 50.000 0.00 0.00 0.00 4.34
4914 8188 0.110238 CAAAACAGCCATCCGACGTG 60.110 55.000 0.00 0.00 0.00 4.49
4915 8189 1.234615 AAAACAGCCATCCGACGTGG 61.235 55.000 0.00 0.00 39.80 4.94
4916 8190 2.391724 AAACAGCCATCCGACGTGGT 62.392 55.000 0.00 0.00 39.01 4.16
4917 8191 1.537814 AACAGCCATCCGACGTGGTA 61.538 55.000 0.00 0.00 39.01 3.25
4918 8192 1.518572 CAGCCATCCGACGTGGTAC 60.519 63.158 0.00 0.00 39.01 3.34
4919 8193 2.202837 GCCATCCGACGTGGTACC 60.203 66.667 4.43 4.43 39.01 3.34
4920 8194 2.718073 GCCATCCGACGTGGTACCT 61.718 63.158 14.36 0.00 39.01 3.08
4921 8195 1.895238 CCATCCGACGTGGTACCTT 59.105 57.895 14.36 0.00 39.52 3.50
4922 8196 1.105457 CCATCCGACGTGGTACCTTA 58.895 55.000 14.36 0.00 39.52 2.69
4923 8197 1.684983 CCATCCGACGTGGTACCTTAT 59.315 52.381 14.36 0.00 39.52 1.73
4924 8198 2.288030 CCATCCGACGTGGTACCTTATC 60.288 54.545 14.36 6.62 39.52 1.75
4925 8199 2.127271 TCCGACGTGGTACCTTATCA 57.873 50.000 14.36 0.00 39.52 2.15
4926 8200 2.019249 TCCGACGTGGTACCTTATCAG 58.981 52.381 14.36 0.39 39.52 2.90
4927 8201 1.747355 CCGACGTGGTACCTTATCAGT 59.253 52.381 14.36 3.98 0.00 3.41
4928 8202 2.223433 CCGACGTGGTACCTTATCAGTC 60.223 54.545 14.36 11.55 0.00 3.51
4929 8203 2.223433 CGACGTGGTACCTTATCAGTCC 60.223 54.545 14.36 0.00 0.00 3.85
4930 8204 1.747355 ACGTGGTACCTTATCAGTCCG 59.253 52.381 14.36 4.11 0.00 4.79
4931 8205 1.535437 CGTGGTACCTTATCAGTCCGC 60.535 57.143 14.36 0.00 0.00 5.54
4932 8206 0.742505 TGGTACCTTATCAGTCCGCG 59.257 55.000 14.36 0.00 0.00 6.46
4933 8207 0.031721 GGTACCTTATCAGTCCGCGG 59.968 60.000 22.12 22.12 0.00 6.46
4934 8208 0.031721 GTACCTTATCAGTCCGCGGG 59.968 60.000 27.83 9.82 0.00 6.13
4935 8209 0.106569 TACCTTATCAGTCCGCGGGA 60.107 55.000 27.83 15.79 0.00 5.14
4944 8218 3.762247 TCCGCGGGACTTTACGGG 61.762 66.667 27.83 0.00 45.65 5.28
4945 8219 3.762247 CCGCGGGACTTTACGGGA 61.762 66.667 20.10 0.00 44.45 5.14
4946 8220 2.262292 CGCGGGACTTTACGGGAA 59.738 61.111 0.00 0.00 44.45 3.97
4947 8221 1.153509 CGCGGGACTTTACGGGAAT 60.154 57.895 0.00 0.00 44.45 3.01
4948 8222 1.149964 CGCGGGACTTTACGGGAATC 61.150 60.000 0.00 0.00 44.45 2.52
4949 8223 0.812811 GCGGGACTTTACGGGAATCC 60.813 60.000 0.00 0.00 0.00 3.01
4959 8233 2.190578 GGGAATCCGGACTGCCAG 59.809 66.667 19.49 0.00 0.00 4.85
4960 8234 2.514824 GGAATCCGGACTGCCAGC 60.515 66.667 6.12 0.00 0.00 4.85
4961 8235 2.268920 GAATCCGGACTGCCAGCA 59.731 61.111 6.12 0.00 0.00 4.41
4962 8236 2.045926 AATCCGGACTGCCAGCAC 60.046 61.111 6.12 0.00 0.00 4.40
4963 8237 3.958147 AATCCGGACTGCCAGCACG 62.958 63.158 6.12 0.00 0.00 5.34
4965 8239 4.063967 CCGGACTGCCAGCACGTA 62.064 66.667 0.00 0.00 0.00 3.57
4966 8240 2.507102 CGGACTGCCAGCACGTAG 60.507 66.667 0.00 0.00 0.00 3.51
4967 8241 2.125512 GGACTGCCAGCACGTAGG 60.126 66.667 0.00 0.00 0.00 3.18
4968 8242 2.646175 GGACTGCCAGCACGTAGGA 61.646 63.158 5.16 0.00 0.00 2.94
4969 8243 1.153745 GACTGCCAGCACGTAGGAG 60.154 63.158 5.16 0.32 0.00 3.69
4970 8244 1.878656 GACTGCCAGCACGTAGGAGT 61.879 60.000 5.16 3.40 0.00 3.85
4971 8245 0.611062 ACTGCCAGCACGTAGGAGTA 60.611 55.000 5.16 0.00 0.00 2.59
4972 8246 0.101399 CTGCCAGCACGTAGGAGTAG 59.899 60.000 5.16 0.00 0.00 2.57
4973 8247 1.320344 TGCCAGCACGTAGGAGTAGG 61.320 60.000 5.16 0.00 0.00 3.18
4974 8248 1.035932 GCCAGCACGTAGGAGTAGGA 61.036 60.000 5.16 0.00 0.00 2.94
4975 8249 1.025812 CCAGCACGTAGGAGTAGGAG 58.974 60.000 0.00 0.00 0.00 3.69
4976 8250 1.682394 CCAGCACGTAGGAGTAGGAGT 60.682 57.143 0.00 0.00 0.00 3.85
4977 8251 1.671845 CAGCACGTAGGAGTAGGAGTC 59.328 57.143 0.00 0.00 0.00 3.36
4978 8252 1.023502 GCACGTAGGAGTAGGAGTCC 58.976 60.000 0.00 0.00 38.00 3.85
4979 8253 1.297664 CACGTAGGAGTAGGAGTCCG 58.702 60.000 2.76 0.00 42.60 4.79
4980 8254 1.134580 CACGTAGGAGTAGGAGTCCGA 60.135 57.143 2.76 0.00 42.60 4.55
4981 8255 1.134551 ACGTAGGAGTAGGAGTCCGAC 60.135 57.143 14.16 14.16 42.60 4.79
4982 8256 1.134580 CGTAGGAGTAGGAGTCCGACA 60.135 57.143 22.63 0.85 41.61 4.35
4983 8257 2.287769 GTAGGAGTAGGAGTCCGACAC 58.712 57.143 22.63 16.68 42.60 3.67
4984 8258 0.034283 AGGAGTAGGAGTCCGACACC 60.034 60.000 24.94 24.94 42.60 4.16
4985 8259 1.036481 GGAGTAGGAGTCCGACACCC 61.036 65.000 22.82 18.59 34.87 4.61
4986 8260 1.000107 AGTAGGAGTCCGACACCCC 60.000 63.158 22.63 4.29 31.51 4.95
4987 8261 2.044650 TAGGAGTCCGACACCCCG 60.045 66.667 11.04 0.00 28.26 5.73
4998 8272 4.278513 CACCCCGGGCCACTCAAA 62.279 66.667 17.73 0.00 0.00 2.69
4999 8273 3.264845 ACCCCGGGCCACTCAAAT 61.265 61.111 17.73 0.00 0.00 2.32
5000 8274 2.440247 CCCCGGGCCACTCAAATC 60.440 66.667 17.73 0.00 0.00 2.17
5001 8275 2.440247 CCCGGGCCACTCAAATCC 60.440 66.667 8.08 0.00 0.00 3.01
5002 8276 2.677228 CCGGGCCACTCAAATCCT 59.323 61.111 4.39 0.00 0.00 3.24
5003 8277 1.000896 CCGGGCCACTCAAATCCTT 60.001 57.895 4.39 0.00 0.00 3.36
5004 8278 0.611896 CCGGGCCACTCAAATCCTTT 60.612 55.000 4.39 0.00 0.00 3.11
5005 8279 0.811281 CGGGCCACTCAAATCCTTTC 59.189 55.000 4.39 0.00 0.00 2.62
5006 8280 1.614317 CGGGCCACTCAAATCCTTTCT 60.614 52.381 4.39 0.00 0.00 2.52
5007 8281 2.095461 GGGCCACTCAAATCCTTTCTC 58.905 52.381 4.39 0.00 0.00 2.87
5008 8282 2.095461 GGCCACTCAAATCCTTTCTCC 58.905 52.381 0.00 0.00 0.00 3.71
5009 8283 2.291217 GGCCACTCAAATCCTTTCTCCT 60.291 50.000 0.00 0.00 0.00 3.69
5010 8284 2.751806 GCCACTCAAATCCTTTCTCCTG 59.248 50.000 0.00 0.00 0.00 3.86
5011 8285 3.350833 CCACTCAAATCCTTTCTCCTGG 58.649 50.000 0.00 0.00 0.00 4.45
5012 8286 3.245052 CCACTCAAATCCTTTCTCCTGGT 60.245 47.826 0.00 0.00 0.00 4.00
5013 8287 4.006319 CACTCAAATCCTTTCTCCTGGTC 58.994 47.826 0.00 0.00 0.00 4.02
5014 8288 3.009584 ACTCAAATCCTTTCTCCTGGTCC 59.990 47.826 0.00 0.00 0.00 4.46
5015 8289 2.308866 TCAAATCCTTTCTCCTGGTCCC 59.691 50.000 0.00 0.00 0.00 4.46
5016 8290 2.041620 CAAATCCTTTCTCCTGGTCCCA 59.958 50.000 0.00 0.00 0.00 4.37
5017 8291 2.059756 ATCCTTTCTCCTGGTCCCAA 57.940 50.000 0.00 0.00 0.00 4.12
5018 8292 2.059756 TCCTTTCTCCTGGTCCCAAT 57.940 50.000 0.00 0.00 0.00 3.16
5019 8293 1.916181 TCCTTTCTCCTGGTCCCAATC 59.084 52.381 0.00 0.00 0.00 2.67
5020 8294 1.918957 CCTTTCTCCTGGTCCCAATCT 59.081 52.381 0.00 0.00 0.00 2.40
5021 8295 2.092699 CCTTTCTCCTGGTCCCAATCTC 60.093 54.545 0.00 0.00 0.00 2.75
5022 8296 2.649742 TTCTCCTGGTCCCAATCTCT 57.350 50.000 0.00 0.00 0.00 3.10
5023 8297 2.649742 TCTCCTGGTCCCAATCTCTT 57.350 50.000 0.00 0.00 0.00 2.85
5024 8298 2.921221 TCTCCTGGTCCCAATCTCTTT 58.079 47.619 0.00 0.00 0.00 2.52
5025 8299 2.840651 TCTCCTGGTCCCAATCTCTTTC 59.159 50.000 0.00 0.00 0.00 2.62
5026 8300 2.573462 CTCCTGGTCCCAATCTCTTTCA 59.427 50.000 0.00 0.00 0.00 2.69
5027 8301 2.305927 TCCTGGTCCCAATCTCTTTCAC 59.694 50.000 0.00 0.00 0.00 3.18
5028 8302 2.307098 CCTGGTCCCAATCTCTTTCACT 59.693 50.000 0.00 0.00 0.00 3.41
5029 8303 3.604582 CTGGTCCCAATCTCTTTCACTC 58.395 50.000 0.00 0.00 0.00 3.51
5030 8304 3.251484 TGGTCCCAATCTCTTTCACTCT 58.749 45.455 0.00 0.00 0.00 3.24
5031 8305 3.008375 TGGTCCCAATCTCTTTCACTCTG 59.992 47.826 0.00 0.00 0.00 3.35
5032 8306 3.006247 GTCCCAATCTCTTTCACTCTGC 58.994 50.000 0.00 0.00 0.00 4.26
5033 8307 2.005451 CCCAATCTCTTTCACTCTGCG 58.995 52.381 0.00 0.00 0.00 5.18
5034 8308 1.396301 CCAATCTCTTTCACTCTGCGC 59.604 52.381 0.00 0.00 0.00 6.09
5035 8309 1.396301 CAATCTCTTTCACTCTGCGCC 59.604 52.381 4.18 0.00 0.00 6.53
5036 8310 0.901124 ATCTCTTTCACTCTGCGCCT 59.099 50.000 4.18 0.00 0.00 5.52
5037 8311 0.037882 TCTCTTTCACTCTGCGCCTG 60.038 55.000 4.18 0.00 0.00 4.85
5038 8312 1.633852 CTCTTTCACTCTGCGCCTGC 61.634 60.000 4.18 0.00 43.20 4.85
5039 8313 1.670406 CTTTCACTCTGCGCCTGCT 60.670 57.895 4.18 0.00 43.34 4.24
5040 8314 1.633852 CTTTCACTCTGCGCCTGCTC 61.634 60.000 4.18 0.00 43.34 4.26
5041 8315 3.596066 TTCACTCTGCGCCTGCTCC 62.596 63.158 4.18 0.00 43.34 4.70
5049 8323 4.729918 CGCCTGCTCCCCTTGCTT 62.730 66.667 0.00 0.00 0.00 3.91
5050 8324 2.283460 GCCTGCTCCCCTTGCTTT 60.283 61.111 0.00 0.00 0.00 3.51
5051 8325 2.643232 GCCTGCTCCCCTTGCTTTG 61.643 63.158 0.00 0.00 0.00 2.77
5052 8326 2.643232 CCTGCTCCCCTTGCTTTGC 61.643 63.158 0.00 0.00 0.00 3.68
5053 8327 1.904865 CTGCTCCCCTTGCTTTGCA 60.905 57.895 0.00 0.00 36.47 4.08
5054 8328 1.457267 TGCTCCCCTTGCTTTGCAA 60.457 52.632 0.00 0.00 46.80 4.08
5062 8336 3.450028 TTGCTTTGCAAACACACCC 57.550 47.368 8.05 0.00 45.96 4.61
5063 8337 0.901124 TTGCTTTGCAAACACACCCT 59.099 45.000 8.05 0.00 45.96 4.34
5064 8338 0.459489 TGCTTTGCAAACACACCCTC 59.541 50.000 8.05 0.00 34.76 4.30
5065 8339 0.249447 GCTTTGCAAACACACCCTCC 60.249 55.000 8.05 0.00 0.00 4.30
5066 8340 1.110442 CTTTGCAAACACACCCTCCA 58.890 50.000 8.05 0.00 0.00 3.86
5067 8341 0.820871 TTTGCAAACACACCCTCCAC 59.179 50.000 8.05 0.00 0.00 4.02
5068 8342 1.380403 TTGCAAACACACCCTCCACG 61.380 55.000 0.00 0.00 0.00 4.94
5069 8343 1.822186 GCAAACACACCCTCCACGT 60.822 57.895 0.00 0.00 0.00 4.49
5070 8344 1.782028 GCAAACACACCCTCCACGTC 61.782 60.000 0.00 0.00 0.00 4.34
5071 8345 1.147600 AAACACACCCTCCACGTCC 59.852 57.895 0.00 0.00 0.00 4.79
5072 8346 1.628238 AAACACACCCTCCACGTCCA 61.628 55.000 0.00 0.00 0.00 4.02
5073 8347 1.628238 AACACACCCTCCACGTCCAA 61.628 55.000 0.00 0.00 0.00 3.53
5074 8348 1.597027 CACACCCTCCACGTCCAAC 60.597 63.158 0.00 0.00 0.00 3.77
5084 8358 4.459331 CGTCCAACGCCGCCATTG 62.459 66.667 0.00 0.00 33.65 2.82
5085 8359 3.361977 GTCCAACGCCGCCATTGT 61.362 61.111 0.00 0.00 0.00 2.71
5086 8360 2.036006 GTCCAACGCCGCCATTGTA 61.036 57.895 0.00 0.00 0.00 2.41
5087 8361 2.036006 TCCAACGCCGCCATTGTAC 61.036 57.895 0.00 0.00 0.00 2.90
5088 8362 2.483288 CAACGCCGCCATTGTACC 59.517 61.111 0.00 0.00 0.00 3.34
5089 8363 2.038269 CAACGCCGCCATTGTACCT 61.038 57.895 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.009774 CACGGATAGCTTCCTTTGTGG 58.990 52.381 11.56 0.00 42.99 4.17
3 4 1.017387 GCCACGGATAGCTTCCTTTG 58.983 55.000 11.56 8.80 42.99 2.77
4 5 0.107165 GGCCACGGATAGCTTCCTTT 60.107 55.000 0.00 0.00 42.99 3.11
5 6 1.527370 GGCCACGGATAGCTTCCTT 59.473 57.895 0.00 1.92 42.99 3.36
67 68 2.417719 GTTAGCCCGATATGCTCTTGG 58.582 52.381 0.00 0.00 40.23 3.61
69 70 2.841442 GGTTAGCCCGATATGCTCTT 57.159 50.000 0.00 0.00 40.23 2.85
84 85 4.690719 CCGGCCACAGCACGGTTA 62.691 66.667 2.24 0.00 43.60 2.85
117 118 3.430098 CGATGTCCTCCTTCTCCTCTTTG 60.430 52.174 0.00 0.00 0.00 2.77
207 212 4.705507 TCCGCCTACTATATCAGGACATTC 59.294 45.833 4.33 0.00 33.42 2.67
214 219 5.164233 CACATTGTCCGCCTACTATATCAG 58.836 45.833 0.00 0.00 0.00 2.90
219 224 3.906720 AACACATTGTCCGCCTACTAT 57.093 42.857 0.00 0.00 0.00 2.12
227 232 8.735303 TGTAAATGATAAAAACACATTGTCCG 57.265 30.769 0.00 0.00 35.00 4.79
303 309 0.104671 TTTTCTTTGCACAGCTGGGC 59.895 50.000 34.21 34.21 46.69 5.36
305 311 6.293027 CCTTAAATTTTTCTTTGCACAGCTGG 60.293 38.462 19.93 8.27 0.00 4.85
307 313 6.258507 CACCTTAAATTTTTCTTTGCACAGCT 59.741 34.615 0.00 0.00 0.00 4.24
308 314 6.037062 ACACCTTAAATTTTTCTTTGCACAGC 59.963 34.615 0.00 0.00 0.00 4.40
339 345 4.803426 CTCGTCCGCCCTGCTCAC 62.803 72.222 0.00 0.00 0.00 3.51
361 371 2.125350 GGTCAGCTTGAGCCGAGG 60.125 66.667 0.00 0.00 43.38 4.63
366 376 1.968540 GTGTGGGGTCAGCTTGAGC 60.969 63.158 6.77 6.77 43.63 4.26
367 377 1.302832 GGTGTGGGGTCAGCTTGAG 60.303 63.158 0.00 0.00 33.69 3.02
368 378 2.836154 GGTGTGGGGTCAGCTTGA 59.164 61.111 0.00 0.00 33.69 3.02
370 380 0.907704 TATCGGTGTGGGGTCAGCTT 60.908 55.000 0.00 0.00 34.23 3.74
372 382 1.144057 CTATCGGTGTGGGGTCAGC 59.856 63.158 0.00 0.00 0.00 4.26
374 384 1.317431 CGACTATCGGTGTGGGGTCA 61.317 60.000 0.00 0.00 36.00 4.02
375 385 1.318158 ACGACTATCGGTGTGGGGTC 61.318 60.000 2.97 0.00 45.59 4.46
378 388 0.381089 GAGACGACTATCGGTGTGGG 59.619 60.000 2.97 0.00 45.59 4.61
386 396 6.645415 TCAAAAGAAAAGGTGAGACGACTATC 59.355 38.462 0.00 0.00 0.00 2.08
453 463 3.160679 ACCACAGCTAAGGCAAATCTT 57.839 42.857 3.62 0.00 41.70 2.40
471 481 2.879026 AGCCGAAGAACTTCTTTGAACC 59.121 45.455 17.40 7.69 39.68 3.62
489 499 0.171231 GTTCGCATCTTCCCAAAGCC 59.829 55.000 0.00 0.00 32.18 4.35
527 538 2.817258 CCGGAACTTGCTAATTTGGACA 59.183 45.455 0.00 0.00 0.00 4.02
597 614 5.298527 AGAAAAGAAATTCTTCGTTCCCGTT 59.701 36.000 8.86 0.00 35.27 4.44
828 1608 2.649349 GCGCGCGTCTAGACTCTG 60.649 66.667 32.35 10.75 0.00 3.35
830 1610 4.908877 GGGCGCGCGTCTAGACTC 62.909 72.222 34.78 12.80 0.00 3.36
849 1629 2.603473 CGGAGTCTGGTGGGTGGA 60.603 66.667 0.00 0.00 0.00 4.02
890 1671 0.795698 TGTGTGTGTATGATGCGTGC 59.204 50.000 0.00 0.00 0.00 5.34
899 1680 1.002251 CCGCGGTTTTTGTGTGTGTAT 60.002 47.619 19.50 0.00 0.00 2.29
928 1709 4.271816 CTGAGATCGGGCGGTCGG 62.272 72.222 0.00 0.00 0.00 4.79
1224 2006 4.900635 AACAATCTCCCGCACATATTTC 57.099 40.909 0.00 0.00 0.00 2.17
1225 2007 5.189928 TGTAACAATCTCCCGCACATATTT 58.810 37.500 0.00 0.00 0.00 1.40
1226 2008 4.776349 TGTAACAATCTCCCGCACATATT 58.224 39.130 0.00 0.00 0.00 1.28
1227 2009 4.415881 TGTAACAATCTCCCGCACATAT 57.584 40.909 0.00 0.00 0.00 1.78
1247 2029 3.195825 ACCTCTCCCTTCTACGACAAATG 59.804 47.826 0.00 0.00 0.00 2.32
1430 2227 0.179111 CCGAAGCAGAGCGTCCATTA 60.179 55.000 0.00 0.00 33.77 1.90
1435 2232 2.564553 ATCACCCGAAGCAGAGCGTC 62.565 60.000 0.00 0.00 33.97 5.19
1526 2330 3.439293 CACACCAGCTGTAATAGAGACG 58.561 50.000 13.81 0.00 0.00 4.18
1536 2340 1.208052 CCTACATAGCACACCAGCTGT 59.792 52.381 13.81 0.00 46.11 4.40
1598 2402 1.032794 TAGCGAATCGATGCTGAGGT 58.967 50.000 17.89 3.96 42.46 3.85
1666 2470 6.101296 AGGCTTGGCACCTTAGTATATAAACT 59.899 38.462 0.00 0.00 31.87 2.66
1667 2471 6.296803 AGGCTTGGCACCTTAGTATATAAAC 58.703 40.000 0.00 0.00 31.87 2.01
1668 2472 6.509523 AGGCTTGGCACCTTAGTATATAAA 57.490 37.500 0.00 0.00 31.87 1.40
1669 2473 7.621006 TTAGGCTTGGCACCTTAGTATATAA 57.379 36.000 1.56 0.00 38.81 0.98
1670 2474 7.621006 TTTAGGCTTGGCACCTTAGTATATA 57.379 36.000 1.56 0.00 38.81 0.86
1671 2475 6.509523 TTTAGGCTTGGCACCTTAGTATAT 57.490 37.500 1.56 0.00 38.81 0.86
1672 2476 5.961398 TTTAGGCTTGGCACCTTAGTATA 57.039 39.130 1.56 0.00 38.81 1.47
1741 2547 3.618690 TGGTTGGTTCCTTTGTTTTGG 57.381 42.857 0.00 0.00 0.00 3.28
1880 2692 4.425577 AGTTCTTGTGATTTGGCGATTC 57.574 40.909 0.00 0.00 0.00 2.52
2070 3055 2.949644 CTGTTTTCAACTCCCGGTCTTT 59.050 45.455 0.00 0.00 0.00 2.52
2076 3061 4.755123 ACTAACATCTGTTTTCAACTCCCG 59.245 41.667 0.20 0.00 39.31 5.14
2084 3069 9.994432 CAAATATCTCCACTAACATCTGTTTTC 57.006 33.333 0.20 0.00 39.31 2.29
2102 3087 5.873712 CGAATGCTCTCTATGGCAAATATCT 59.126 40.000 0.00 0.00 41.90 1.98
2127 3112 8.361139 CAAGATAATGGAAATACTCTCCGTAGT 58.639 37.037 0.00 0.00 35.55 2.73
2131 3116 6.525629 ACCAAGATAATGGAAATACTCTCCG 58.474 40.000 0.00 0.00 43.54 4.63
2357 3358 4.111375 ACCGTAGAGTACATCTGCAAAG 57.889 45.455 0.00 0.00 40.43 2.77
2705 3708 1.679139 CTGCCAGAACACAACCAGAA 58.321 50.000 0.00 0.00 0.00 3.02
2822 3940 4.275936 ACAGACACTTGATGTAACCAAAGC 59.724 41.667 0.00 0.00 43.56 3.51
2930 4048 1.345415 GGTTCTTGTCCCACGGTAAGA 59.655 52.381 0.00 0.00 0.00 2.10
3099 4217 2.574955 GCTCCGCGTCCCCTGATAT 61.575 63.158 4.92 0.00 0.00 1.63
3213 4331 5.124645 ACCAAAAACATTGTGTGCATCAAT 58.875 33.333 12.26 12.26 36.16 2.57
3271 4389 4.680171 ATAGCACTTAGAACGCCAAAAC 57.320 40.909 0.00 0.00 0.00 2.43
3433 4558 6.318144 CAGGTCATCAAAGATAGCACAATTCT 59.682 38.462 0.00 0.00 0.00 2.40
3437 4562 3.691118 GCAGGTCATCAAAGATAGCACAA 59.309 43.478 0.00 0.00 0.00 3.33
3439 4564 3.273434 TGCAGGTCATCAAAGATAGCAC 58.727 45.455 0.00 0.00 0.00 4.40
3458 4583 5.573337 AGGCTCTGTAAATTTGAGAATGC 57.427 39.130 0.00 3.43 0.00 3.56
3514 4841 6.044682 GCAGCACTAGGAAATTGCAAATTAT 58.955 36.000 1.71 0.00 38.81 1.28
3525 4852 4.551702 TTGTGATAGCAGCACTAGGAAA 57.448 40.909 0.00 0.00 37.18 3.13
3602 4931 9.030452 AGTAGATCCATACTCAAGATTCATACC 57.970 37.037 0.00 0.00 29.89 2.73
3646 4975 1.000896 GTGGTACCTTGGGCTGCAT 60.001 57.895 14.36 0.00 0.00 3.96
3647 4976 2.434331 GTGGTACCTTGGGCTGCA 59.566 61.111 14.36 0.00 0.00 4.41
3738 5067 2.554142 CAAACAGCACACTCAGTCTCA 58.446 47.619 0.00 0.00 0.00 3.27
3796 5125 1.954362 AAAAGGTGCTTGCACGGCAA 61.954 50.000 17.87 10.28 46.80 4.52
3886 5215 4.035091 GCGCTGAATTGTACCATCAATGTA 59.965 41.667 0.00 0.00 37.96 2.29
3895 5227 1.651987 TAGCTGCGCTGAATTGTACC 58.348 50.000 19.32 0.00 40.10 3.34
3918 5250 2.428171 CTGCGGGATGACCATCAAAATT 59.572 45.455 11.59 0.00 39.54 1.82
3921 5253 0.394216 CCTGCGGGATGACCATCAAA 60.394 55.000 5.28 0.00 39.54 2.69
3999 5331 3.452786 CGCTCCTTCCGGCTCTCA 61.453 66.667 0.00 0.00 0.00 3.27
4232 5571 9.627123 CTAAATTCTAATGACTTGGGGTTGATA 57.373 33.333 0.00 0.00 0.00 2.15
4233 5572 8.336235 TCTAAATTCTAATGACTTGGGGTTGAT 58.664 33.333 0.00 0.00 0.00 2.57
4234 5573 7.695055 TCTAAATTCTAATGACTTGGGGTTGA 58.305 34.615 0.00 0.00 0.00 3.18
4235 5574 7.938140 TCTAAATTCTAATGACTTGGGGTTG 57.062 36.000 0.00 0.00 0.00 3.77
4237 5576 7.122799 GCTTTCTAAATTCTAATGACTTGGGGT 59.877 37.037 0.00 0.00 0.00 4.95
4239 5578 8.286191 AGCTTTCTAAATTCTAATGACTTGGG 57.714 34.615 0.00 0.00 0.00 4.12
4241 5580 9.070149 GCAAGCTTTCTAAATTCTAATGACTTG 57.930 33.333 0.00 0.00 33.28 3.16
4334 5683 4.974645 AGGAAAGGTGAACTACATGACA 57.025 40.909 0.00 0.00 0.00 3.58
4343 5692 2.469826 CCGCAAAAAGGAAAGGTGAAC 58.530 47.619 0.00 0.00 0.00 3.18
4399 5752 2.108168 CAAGTATTCCAGACGGAGGGA 58.892 52.381 0.00 0.00 44.10 4.20
4402 5755 3.868757 TGACAAGTATTCCAGACGGAG 57.131 47.619 0.00 0.00 44.10 4.63
4403 5756 5.925506 TTATGACAAGTATTCCAGACGGA 57.074 39.130 0.00 0.00 40.60 4.69
4405 5758 7.910162 CCATTTTTATGACAAGTATTCCAGACG 59.090 37.037 0.00 0.00 0.00 4.18
4406 5759 8.956426 TCCATTTTTATGACAAGTATTCCAGAC 58.044 33.333 0.00 0.00 0.00 3.51
4407 5760 9.699410 ATCCATTTTTATGACAAGTATTCCAGA 57.301 29.630 0.00 0.00 0.00 3.86
4458 5811 8.690884 CGAGGAATGGATGTATCTAGATGTATT 58.309 37.037 15.79 6.57 0.00 1.89
4459 5812 7.286546 CCGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
4460 5813 6.603599 CCGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
4461 5814 5.420421 CCGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
4462 5815 5.654209 TCCGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
4463 5816 5.832221 TCCGAGGAATGGATGTATCTAGAT 58.168 41.667 10.73 10.73 0.00 1.98
4464 5817 5.256806 TCCGAGGAATGGATGTATCTAGA 57.743 43.478 0.00 0.00 0.00 2.43
4465 5818 7.340743 ACTTATCCGAGGAATGGATGTATCTAG 59.659 40.741 4.80 0.00 45.70 2.43
4466 5819 7.182760 ACTTATCCGAGGAATGGATGTATCTA 58.817 38.462 4.80 0.00 45.70 1.98
4467 5820 6.019748 ACTTATCCGAGGAATGGATGTATCT 58.980 40.000 4.80 0.00 45.70 1.98
4468 5821 6.287589 ACTTATCCGAGGAATGGATGTATC 57.712 41.667 4.80 0.00 45.70 2.24
4469 5822 7.979786 ATACTTATCCGAGGAATGGATGTAT 57.020 36.000 4.80 2.78 45.70 2.29
4470 5823 7.792364 AATACTTATCCGAGGAATGGATGTA 57.208 36.000 4.80 0.63 45.70 2.29
4471 5824 6.688073 AATACTTATCCGAGGAATGGATGT 57.312 37.500 4.80 0.00 45.70 3.06
4472 5825 6.595716 GGAAATACTTATCCGAGGAATGGATG 59.404 42.308 4.80 0.00 45.70 3.51
4474 5827 6.110411 GGAAATACTTATCCGAGGAATGGA 57.890 41.667 0.00 0.00 40.46 3.41
4484 5837 1.345415 TCCGCCCGGAAATACTTATCC 59.655 52.381 0.73 0.00 42.05 2.59
4485 5838 2.612221 CCTCCGCCCGGAAATACTTATC 60.612 54.545 0.73 0.00 44.66 1.75
4486 5839 1.346722 CCTCCGCCCGGAAATACTTAT 59.653 52.381 0.73 0.00 44.66 1.73
4487 5840 0.754472 CCTCCGCCCGGAAATACTTA 59.246 55.000 0.73 0.00 44.66 2.24
4488 5841 1.525442 CCTCCGCCCGGAAATACTT 59.475 57.895 0.73 0.00 44.66 2.24
4489 5842 2.440817 CCCTCCGCCCGGAAATACT 61.441 63.158 0.73 0.00 44.66 2.12
4490 5843 2.110420 CCCTCCGCCCGGAAATAC 59.890 66.667 0.73 0.00 44.66 1.89
4491 5844 2.041715 TCCCTCCGCCCGGAAATA 60.042 61.111 0.73 0.00 44.66 1.40
4492 5845 2.884179 TACTCCCTCCGCCCGGAAAT 62.884 60.000 0.73 0.00 44.66 2.17
4493 5846 3.605412 TACTCCCTCCGCCCGGAAA 62.605 63.158 0.73 0.00 44.66 3.13
4494 5847 4.064768 TACTCCCTCCGCCCGGAA 62.065 66.667 0.73 0.00 44.66 4.30
4495 5848 4.828296 GTACTCCCTCCGCCCGGA 62.828 72.222 0.73 9.31 42.90 5.14
4497 5850 3.834799 GTGTACTCCCTCCGCCCG 61.835 72.222 0.00 0.00 0.00 6.13
4498 5851 3.834799 CGTGTACTCCCTCCGCCC 61.835 72.222 0.00 0.00 0.00 6.13
4499 5852 3.834799 CCGTGTACTCCCTCCGCC 61.835 72.222 0.00 0.00 0.00 6.13
4500 5853 0.820891 TATCCGTGTACTCCCTCCGC 60.821 60.000 0.00 0.00 0.00 5.54
4501 5854 1.236628 CTATCCGTGTACTCCCTCCG 58.763 60.000 0.00 0.00 0.00 4.63
4502 5855 1.144503 TCCTATCCGTGTACTCCCTCC 59.855 57.143 0.00 0.00 0.00 4.30
4503 5856 2.653234 TCCTATCCGTGTACTCCCTC 57.347 55.000 0.00 0.00 0.00 4.30
4504 5857 3.614568 ATTCCTATCCGTGTACTCCCT 57.385 47.619 0.00 0.00 0.00 4.20
4505 5858 5.997384 ATAATTCCTATCCGTGTACTCCC 57.003 43.478 0.00 0.00 0.00 4.30
4506 5859 7.536855 CACTATAATTCCTATCCGTGTACTCC 58.463 42.308 0.00 0.00 0.00 3.85
4507 5860 7.028361 GCACTATAATTCCTATCCGTGTACTC 58.972 42.308 0.00 0.00 30.11 2.59
4508 5861 6.720288 AGCACTATAATTCCTATCCGTGTACT 59.280 38.462 0.00 0.00 30.11 2.73
4509 5862 6.921914 AGCACTATAATTCCTATCCGTGTAC 58.078 40.000 0.00 0.00 30.11 2.90
4510 5863 6.152323 GGAGCACTATAATTCCTATCCGTGTA 59.848 42.308 0.00 0.00 30.11 2.90
4511 5864 5.047235 GGAGCACTATAATTCCTATCCGTGT 60.047 44.000 0.00 0.00 30.11 4.49
4512 5865 5.047306 TGGAGCACTATAATTCCTATCCGTG 60.047 44.000 0.00 0.00 0.00 4.94
4513 5866 5.084519 TGGAGCACTATAATTCCTATCCGT 58.915 41.667 0.00 0.00 0.00 4.69
4514 5867 5.661056 TGGAGCACTATAATTCCTATCCG 57.339 43.478 0.00 0.00 0.00 4.18
4515 5868 6.825721 CCAATGGAGCACTATAATTCCTATCC 59.174 42.308 0.00 0.00 0.00 2.59
4516 5869 7.398024 ACCAATGGAGCACTATAATTCCTATC 58.602 38.462 6.16 0.00 0.00 2.08
4517 5870 7.335127 ACCAATGGAGCACTATAATTCCTAT 57.665 36.000 6.16 0.00 0.00 2.57
4518 5871 6.763715 ACCAATGGAGCACTATAATTCCTA 57.236 37.500 6.16 0.00 0.00 2.94
4519 5872 5.653255 ACCAATGGAGCACTATAATTCCT 57.347 39.130 6.16 0.00 0.00 3.36
4520 5873 8.409358 AAATACCAATGGAGCACTATAATTCC 57.591 34.615 6.16 0.00 0.00 3.01
4525 5878 7.870954 CGTCTAAAATACCAATGGAGCACTATA 59.129 37.037 6.16 0.00 0.00 1.31
4537 5890 7.505258 TCATCATCATCCGTCTAAAATACCAA 58.495 34.615 0.00 0.00 0.00 3.67
4565 7493 5.815222 CACGAGTAATACCAATGGATGTTCA 59.185 40.000 6.16 0.00 0.00 3.18
4566 7494 5.277345 GCACGAGTAATACCAATGGATGTTC 60.277 44.000 6.16 0.00 0.00 3.18
4609 7550 3.457380 ACAGCATGAGATGATAACTGGGT 59.543 43.478 0.00 0.00 39.69 4.51
4764 8034 7.043986 CGTATCACTAGCTCTATGACAAACAAC 60.044 40.741 0.00 0.00 0.00 3.32
4766 8036 6.095021 ACGTATCACTAGCTCTATGACAAACA 59.905 38.462 0.00 0.00 0.00 2.83
4771 8041 6.301687 TGAACGTATCACTAGCTCTATGAC 57.698 41.667 0.00 0.00 31.50 3.06
4784 8054 2.747177 AGATGGGGAGTGAACGTATCA 58.253 47.619 0.00 0.00 35.05 2.15
4785 8055 3.821421 AAGATGGGGAGTGAACGTATC 57.179 47.619 0.00 0.00 0.00 2.24
4786 8056 4.569719 AAAAGATGGGGAGTGAACGTAT 57.430 40.909 0.00 0.00 0.00 3.06
4787 8057 5.424252 AGATAAAAGATGGGGAGTGAACGTA 59.576 40.000 0.00 0.00 0.00 3.57
4788 8058 2.951229 AAAAGATGGGGAGTGAACGT 57.049 45.000 0.00 0.00 0.00 3.99
4789 8059 4.770795 AGATAAAAGATGGGGAGTGAACG 58.229 43.478 0.00 0.00 0.00 3.95
4790 8060 6.659242 TCAAAGATAAAAGATGGGGAGTGAAC 59.341 38.462 0.00 0.00 0.00 3.18
4791 8061 6.789268 TCAAAGATAAAAGATGGGGAGTGAA 58.211 36.000 0.00 0.00 0.00 3.18
4793 8063 6.418101 TCTCAAAGATAAAAGATGGGGAGTG 58.582 40.000 0.00 0.00 0.00 3.51
4868 8142 3.504906 TCGTTGTCGAAGATGTCCTTAGT 59.495 43.478 0.00 0.00 43.34 2.24
4886 8160 0.106918 TGGCTGTTTTGAGGGTCGTT 60.107 50.000 0.00 0.00 0.00 3.85
4887 8161 0.110486 ATGGCTGTTTTGAGGGTCGT 59.890 50.000 0.00 0.00 0.00 4.34
4896 8170 1.234615 CCACGTCGGATGGCTGTTTT 61.235 55.000 1.77 0.00 36.56 2.43
4905 8179 2.621998 CTGATAAGGTACCACGTCGGAT 59.378 50.000 15.94 0.00 38.63 4.18
4906 8180 2.019249 CTGATAAGGTACCACGTCGGA 58.981 52.381 15.94 0.00 38.63 4.55
4907 8181 1.747355 ACTGATAAGGTACCACGTCGG 59.253 52.381 15.94 14.90 42.50 4.79
4908 8182 2.223433 GGACTGATAAGGTACCACGTCG 60.223 54.545 15.94 7.49 0.00 5.12
4909 8183 2.223433 CGGACTGATAAGGTACCACGTC 60.223 54.545 15.94 8.95 0.00 4.34
4910 8184 1.747355 CGGACTGATAAGGTACCACGT 59.253 52.381 15.94 0.95 0.00 4.49
4911 8185 1.535437 GCGGACTGATAAGGTACCACG 60.535 57.143 15.94 5.31 0.00 4.94
4912 8186 1.535437 CGCGGACTGATAAGGTACCAC 60.535 57.143 15.94 3.14 0.00 4.16
4913 8187 0.742505 CGCGGACTGATAAGGTACCA 59.257 55.000 15.94 0.00 0.00 3.25
4914 8188 0.031721 CCGCGGACTGATAAGGTACC 59.968 60.000 24.07 2.73 0.00 3.34
4915 8189 0.031721 CCCGCGGACTGATAAGGTAC 59.968 60.000 30.73 0.00 0.00 3.34
4916 8190 0.106569 TCCCGCGGACTGATAAGGTA 60.107 55.000 30.73 0.00 0.00 3.08
4917 8191 1.380785 TCCCGCGGACTGATAAGGT 60.381 57.895 30.73 0.00 0.00 3.50
4918 8192 3.533720 TCCCGCGGACTGATAAGG 58.466 61.111 30.73 6.27 0.00 2.69
4927 8201 3.762247 CCCGTAAAGTCCCGCGGA 61.762 66.667 30.73 10.38 46.33 5.54
4928 8202 2.582734 ATTCCCGTAAAGTCCCGCGG 62.583 60.000 21.04 21.04 43.40 6.46
4929 8203 1.149964 GATTCCCGTAAAGTCCCGCG 61.150 60.000 0.00 0.00 0.00 6.46
4930 8204 0.812811 GGATTCCCGTAAAGTCCCGC 60.813 60.000 0.00 0.00 0.00 6.13
4931 8205 3.374506 GGATTCCCGTAAAGTCCCG 57.625 57.895 0.00 0.00 0.00 5.14
4942 8216 2.190578 CTGGCAGTCCGGATTCCC 59.809 66.667 7.81 2.73 41.45 3.97
4943 8217 2.514824 GCTGGCAGTCCGGATTCC 60.515 66.667 17.16 10.12 41.45 3.01
4944 8218 2.109126 GTGCTGGCAGTCCGGATTC 61.109 63.158 17.16 0.00 41.45 2.52
4945 8219 2.045926 GTGCTGGCAGTCCGGATT 60.046 61.111 17.16 0.00 41.45 3.01
4946 8220 4.457496 CGTGCTGGCAGTCCGGAT 62.457 66.667 17.16 0.00 41.45 4.18
4948 8222 3.989698 CTACGTGCTGGCAGTCCGG 62.990 68.421 24.40 0.00 41.86 5.14
4949 8223 2.507102 CTACGTGCTGGCAGTCCG 60.507 66.667 17.16 19.41 34.14 4.79
4950 8224 2.125512 CCTACGTGCTGGCAGTCC 60.126 66.667 17.16 5.93 0.00 3.85
4951 8225 1.153745 CTCCTACGTGCTGGCAGTC 60.154 63.158 17.16 9.10 0.00 3.51
4952 8226 0.611062 TACTCCTACGTGCTGGCAGT 60.611 55.000 17.16 0.00 0.00 4.40
4953 8227 0.101399 CTACTCCTACGTGCTGGCAG 59.899 60.000 10.94 10.94 0.00 4.85
4954 8228 1.320344 CCTACTCCTACGTGCTGGCA 61.320 60.000 0.00 0.00 0.00 4.92
4955 8229 1.035932 TCCTACTCCTACGTGCTGGC 61.036 60.000 0.00 0.00 0.00 4.85
4956 8230 1.025812 CTCCTACTCCTACGTGCTGG 58.974 60.000 0.00 0.00 0.00 4.85
4957 8231 1.671845 GACTCCTACTCCTACGTGCTG 59.328 57.143 0.00 0.00 0.00 4.41
4958 8232 1.408544 GGACTCCTACTCCTACGTGCT 60.409 57.143 0.00 0.00 0.00 4.40
4959 8233 1.023502 GGACTCCTACTCCTACGTGC 58.976 60.000 0.00 0.00 0.00 5.34
4960 8234 1.134580 TCGGACTCCTACTCCTACGTG 60.135 57.143 0.00 0.00 0.00 4.49
4961 8235 1.134551 GTCGGACTCCTACTCCTACGT 60.135 57.143 0.00 0.00 0.00 3.57
4962 8236 1.134580 TGTCGGACTCCTACTCCTACG 60.135 57.143 9.88 0.00 0.00 3.51
4963 8237 2.287769 GTGTCGGACTCCTACTCCTAC 58.712 57.143 9.88 0.00 0.00 3.18
4964 8238 1.211457 GGTGTCGGACTCCTACTCCTA 59.789 57.143 19.31 0.00 0.00 2.94
4965 8239 0.034283 GGTGTCGGACTCCTACTCCT 60.034 60.000 19.31 0.00 0.00 3.69
4966 8240 1.036481 GGGTGTCGGACTCCTACTCC 61.036 65.000 23.94 10.95 32.60 3.85
4967 8241 1.036481 GGGGTGTCGGACTCCTACTC 61.036 65.000 23.94 8.18 42.92 2.59
4968 8242 1.000107 GGGGTGTCGGACTCCTACT 60.000 63.158 23.94 0.00 42.92 2.57
4969 8243 2.413142 CGGGGTGTCGGACTCCTAC 61.413 68.421 23.94 17.29 44.30 3.18
4970 8244 2.044650 CGGGGTGTCGGACTCCTA 60.045 66.667 23.94 0.00 44.30 2.94
4981 8255 3.583882 ATTTGAGTGGCCCGGGGTG 62.584 63.158 25.28 0.00 0.00 4.61
4982 8256 3.264845 ATTTGAGTGGCCCGGGGT 61.265 61.111 25.28 0.00 0.00 4.95
4983 8257 2.440247 GATTTGAGTGGCCCGGGG 60.440 66.667 25.28 9.31 0.00 5.73
4984 8258 2.440247 GGATTTGAGTGGCCCGGG 60.440 66.667 19.09 19.09 0.00 5.73
4985 8259 0.611896 AAAGGATTTGAGTGGCCCGG 60.612 55.000 0.00 0.00 36.60 5.73
4986 8260 0.811281 GAAAGGATTTGAGTGGCCCG 59.189 55.000 0.00 0.00 39.27 6.13
4987 8261 2.095461 GAGAAAGGATTTGAGTGGCCC 58.905 52.381 0.00 0.00 39.27 5.80
4988 8262 2.095461 GGAGAAAGGATTTGAGTGGCC 58.905 52.381 0.00 0.00 39.27 5.36
4989 8263 2.751806 CAGGAGAAAGGATTTGAGTGGC 59.248 50.000 0.00 0.00 39.27 5.01
4990 8264 3.245052 ACCAGGAGAAAGGATTTGAGTGG 60.245 47.826 0.00 0.00 39.27 4.00
4991 8265 4.006319 GACCAGGAGAAAGGATTTGAGTG 58.994 47.826 0.00 0.00 39.27 3.51
4992 8266 3.009584 GGACCAGGAGAAAGGATTTGAGT 59.990 47.826 0.00 0.00 39.27 3.41
4993 8267 3.615155 GGACCAGGAGAAAGGATTTGAG 58.385 50.000 0.00 0.00 39.27 3.02
4994 8268 2.308866 GGGACCAGGAGAAAGGATTTGA 59.691 50.000 0.00 0.00 39.27 2.69
4995 8269 2.041620 TGGGACCAGGAGAAAGGATTTG 59.958 50.000 0.00 0.00 39.27 2.32
4996 8270 2.358258 TGGGACCAGGAGAAAGGATTT 58.642 47.619 0.00 0.00 43.98 2.17
4997 8271 2.059756 TGGGACCAGGAGAAAGGATT 57.940 50.000 0.00 0.00 0.00 3.01
4998 8272 2.059756 TTGGGACCAGGAGAAAGGAT 57.940 50.000 0.00 0.00 0.00 3.24
4999 8273 1.916181 GATTGGGACCAGGAGAAAGGA 59.084 52.381 0.00 0.00 0.00 3.36
5000 8274 1.918957 AGATTGGGACCAGGAGAAAGG 59.081 52.381 0.00 0.00 0.00 3.11
5001 8275 2.843113 AGAGATTGGGACCAGGAGAAAG 59.157 50.000 0.00 0.00 0.00 2.62
5002 8276 2.921221 AGAGATTGGGACCAGGAGAAA 58.079 47.619 0.00 0.00 0.00 2.52
5003 8277 2.649742 AGAGATTGGGACCAGGAGAA 57.350 50.000 0.00 0.00 0.00 2.87
5004 8278 2.649742 AAGAGATTGGGACCAGGAGA 57.350 50.000 0.00 0.00 0.00 3.71
5005 8279 2.573462 TGAAAGAGATTGGGACCAGGAG 59.427 50.000 0.00 0.00 0.00 3.69
5006 8280 2.305927 GTGAAAGAGATTGGGACCAGGA 59.694 50.000 0.00 0.00 0.00 3.86
5007 8281 2.307098 AGTGAAAGAGATTGGGACCAGG 59.693 50.000 0.00 0.00 0.00 4.45
5008 8282 3.262915 AGAGTGAAAGAGATTGGGACCAG 59.737 47.826 0.00 0.00 0.00 4.00
5009 8283 3.008375 CAGAGTGAAAGAGATTGGGACCA 59.992 47.826 0.00 0.00 0.00 4.02
5010 8284 3.604582 CAGAGTGAAAGAGATTGGGACC 58.395 50.000 0.00 0.00 0.00 4.46
5011 8285 3.006247 GCAGAGTGAAAGAGATTGGGAC 58.994 50.000 0.00 0.00 0.00 4.46
5012 8286 2.354103 CGCAGAGTGAAAGAGATTGGGA 60.354 50.000 0.00 0.00 0.00 4.37
5013 8287 2.005451 CGCAGAGTGAAAGAGATTGGG 58.995 52.381 0.00 0.00 0.00 4.12
5014 8288 1.396301 GCGCAGAGTGAAAGAGATTGG 59.604 52.381 0.30 0.00 0.00 3.16
5015 8289 1.396301 GGCGCAGAGTGAAAGAGATTG 59.604 52.381 10.83 0.00 0.00 2.67
5016 8290 1.277557 AGGCGCAGAGTGAAAGAGATT 59.722 47.619 10.83 0.00 0.00 2.40
5017 8291 0.901124 AGGCGCAGAGTGAAAGAGAT 59.099 50.000 10.83 0.00 0.00 2.75
5018 8292 0.037882 CAGGCGCAGAGTGAAAGAGA 60.038 55.000 10.83 0.00 0.00 3.10
5019 8293 1.633852 GCAGGCGCAGAGTGAAAGAG 61.634 60.000 10.83 0.00 38.36 2.85
5020 8294 1.669115 GCAGGCGCAGAGTGAAAGA 60.669 57.895 10.83 0.00 38.36 2.52
5021 8295 1.633852 GAGCAGGCGCAGAGTGAAAG 61.634 60.000 10.83 0.00 42.27 2.62
5022 8296 1.669115 GAGCAGGCGCAGAGTGAAA 60.669 57.895 10.83 0.00 42.27 2.69
5023 8297 2.047844 GAGCAGGCGCAGAGTGAA 60.048 61.111 10.83 0.00 42.27 3.18
5024 8298 4.074526 GGAGCAGGCGCAGAGTGA 62.075 66.667 10.83 0.00 42.27 3.41
5032 8306 4.729918 AAGCAAGGGGAGCAGGCG 62.730 66.667 0.00 0.00 0.00 5.52
5033 8307 2.283460 AAAGCAAGGGGAGCAGGC 60.283 61.111 0.00 0.00 0.00 4.85
5034 8308 2.643232 GCAAAGCAAGGGGAGCAGG 61.643 63.158 0.00 0.00 0.00 4.85
5035 8309 1.466025 TTGCAAAGCAAGGGGAGCAG 61.466 55.000 0.00 0.00 43.99 4.24
5036 8310 1.457267 TTGCAAAGCAAGGGGAGCA 60.457 52.632 0.00 0.00 43.99 4.26
5037 8311 3.458653 TTGCAAAGCAAGGGGAGC 58.541 55.556 0.00 0.00 43.99 4.70
5045 8319 0.459489 GAGGGTGTGTTTGCAAAGCA 59.541 50.000 13.26 11.95 33.50 3.91
5046 8320 0.249447 GGAGGGTGTGTTTGCAAAGC 60.249 55.000 13.26 9.33 0.00 3.51
5047 8321 1.110442 TGGAGGGTGTGTTTGCAAAG 58.890 50.000 13.26 0.00 0.00 2.77
5048 8322 0.820871 GTGGAGGGTGTGTTTGCAAA 59.179 50.000 8.05 8.05 0.00 3.68
5049 8323 1.380403 CGTGGAGGGTGTGTTTGCAA 61.380 55.000 0.00 0.00 0.00 4.08
5050 8324 1.821759 CGTGGAGGGTGTGTTTGCA 60.822 57.895 0.00 0.00 0.00 4.08
5051 8325 1.782028 GACGTGGAGGGTGTGTTTGC 61.782 60.000 0.00 0.00 0.00 3.68
5052 8326 1.164041 GGACGTGGAGGGTGTGTTTG 61.164 60.000 0.00 0.00 0.00 2.93
5053 8327 1.147600 GGACGTGGAGGGTGTGTTT 59.852 57.895 0.00 0.00 0.00 2.83
5054 8328 1.628238 TTGGACGTGGAGGGTGTGTT 61.628 55.000 0.00 0.00 0.00 3.32
5055 8329 2.067605 TTGGACGTGGAGGGTGTGT 61.068 57.895 0.00 0.00 0.00 3.72
5056 8330 1.597027 GTTGGACGTGGAGGGTGTG 60.597 63.158 0.00 0.00 0.00 3.82
5057 8331 2.826702 GTTGGACGTGGAGGGTGT 59.173 61.111 0.00 0.00 0.00 4.16
5058 8332 2.357034 CGTTGGACGTGGAGGGTG 60.357 66.667 0.00 0.00 36.74 4.61
5059 8333 4.309950 GCGTTGGACGTGGAGGGT 62.310 66.667 0.00 0.00 44.73 4.34
5068 8342 2.036006 TACAATGGCGGCGTTGGAC 61.036 57.895 37.34 0.00 0.00 4.02
5069 8343 2.036006 GTACAATGGCGGCGTTGGA 61.036 57.895 37.34 31.51 0.00 3.53
5070 8344 2.483288 GTACAATGGCGGCGTTGG 59.517 61.111 37.34 23.78 0.00 3.77
5071 8345 2.038269 AGGTACAATGGCGGCGTTG 61.038 57.895 34.54 34.54 0.00 4.10
5072 8346 2.349755 AGGTACAATGGCGGCGTT 59.650 55.556 11.16 11.16 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.