Multiple sequence alignment - TraesCS5D01G223700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G223700 chr5D 100.000 2595 0 0 2487 5081 331404465 331401871 0.000000e+00 4793.0
1 TraesCS5D01G223700 chr5D 100.000 2176 0 0 1 2176 331406951 331404776 0.000000e+00 4019.0
2 TraesCS5D01G223700 chr5B 92.943 1162 61 9 2977 4137 387174823 387173682 0.000000e+00 1672.0
3 TraesCS5D01G223700 chr5B 87.508 1481 88 37 491 1905 387176984 387175535 0.000000e+00 1620.0
4 TraesCS5D01G223700 chr5B 91.028 535 30 11 4198 4724 387173648 387173124 0.000000e+00 706.0
5 TraesCS5D01G223700 chr5B 89.352 432 26 14 1 418 387177432 387177007 4.510000e-145 525.0
6 TraesCS5D01G223700 chr5B 90.559 286 16 4 4798 5081 387173101 387172825 8.040000e-98 368.0
7 TraesCS5D01G223700 chr5A 91.764 1202 74 16 2978 4168 432034953 432033766 0.000000e+00 1648.0
8 TraesCS5D01G223700 chr5A 84.870 846 57 37 654 1468 432037033 432036228 0.000000e+00 787.0
9 TraesCS5D01G223700 chr5A 88.355 541 35 14 4198 4724 432033772 432033246 4.320000e-175 625.0
10 TraesCS5D01G223700 chr5A 91.509 318 19 4 4769 5081 432033237 432032923 1.010000e-116 431.0
11 TraesCS5D01G223700 chr5A 96.512 172 5 1 1900 2070 290391693 290391864 2.990000e-72 283.0
12 TraesCS5D01G223700 chr5A 88.800 125 14 0 1648 1772 432036065 432035941 2.450000e-33 154.0
13 TraesCS5D01G223700 chr1D 99.390 164 1 0 1904 2067 35670309 35670146 1.070000e-76 298.0
14 TraesCS5D01G223700 chr2D 98.193 166 2 1 1904 2068 348190802 348190637 6.440000e-74 289.0
15 TraesCS5D01G223700 chr2D 96.491 171 5 1 1904 2073 425287097 425286927 1.080000e-71 281.0
16 TraesCS5D01G223700 chr2D 95.977 174 6 1 1896 2068 647970085 647970258 1.080000e-71 281.0
17 TraesCS5D01G223700 chr2B 97.619 168 3 1 1902 2068 594833873 594834040 2.310000e-73 287.0
18 TraesCS5D01G223700 chr3A 95.455 176 7 1 1896 2070 744921119 744920944 3.870000e-71 279.0
19 TraesCS5D01G223700 chr3B 94.944 178 8 1 1896 2072 62969923 62970100 1.390000e-70 278.0
20 TraesCS5D01G223700 chr4D 88.785 214 19 5 1866 2076 333771944 333771733 1.820000e-64 257.0
21 TraesCS5D01G223700 chr4D 91.111 45 4 0 1497 1541 475927714 475927670 1.530000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G223700 chr5D 331401871 331406951 5080 True 4406.0 4793 100.0000 1 5081 2 chr5D.!!$R1 5080
1 TraesCS5D01G223700 chr5B 387172825 387177432 4607 True 978.2 1672 90.2780 1 5081 5 chr5B.!!$R1 5080
2 TraesCS5D01G223700 chr5A 432032923 432037033 4110 True 729.0 1648 89.0596 654 5081 5 chr5A.!!$R1 4427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 503 0.035056 CTTCATTTCCAGCCGGACCT 60.035 55.0 5.05 0.0 42.67 3.85 F
480 504 0.035439 TTCATTTCCAGCCGGACCTC 60.035 55.0 5.05 0.0 42.67 3.85 F
706 749 0.249489 GTGCACTCACTCGGTCAGTT 60.249 55.0 10.32 0.0 40.03 3.16 F
1466 1566 0.397957 TCCGATGGCAGGGCTTAGTA 60.398 55.0 2.63 0.0 0.00 1.82 F
1723 1853 1.039068 TGTTGAGTGCATTTGTGGGG 58.961 50.0 0.00 0.0 0.00 4.96 F
3432 3618 0.682209 ATGCTGAAGCCCGCAAGATT 60.682 50.0 0.00 0.0 39.89 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1527 0.108615 AGTCGATTCGTTGGGCAGAG 60.109 55.000 5.89 0.00 0.00 3.35 R
1662 1792 1.070134 TCGAAGCTCATTAATCCCCCG 59.930 52.381 0.00 0.00 0.00 5.73 R
2074 2234 1.140312 CCTAGAAGGGCAATAGGGCA 58.860 55.000 0.00 0.00 45.66 5.36 R
2928 3111 1.702401 TGGTGAACAGCTAACCATCCA 59.298 47.619 5.82 0.00 39.05 3.41 R
3489 3675 0.037326 CGGCAGTTGGCTTCAGAGTA 60.037 55.000 4.12 0.00 44.01 2.59 R
4791 5003 0.037512 CAGTCAGCTGCAGTGCTACT 60.038 55.000 17.60 10.62 41.98 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.928661 CTAAATATAGCCGACATGGTGC 57.071 45.455 0.00 0.00 41.21 5.01
32 33 1.165907 ACATGGTGCACAGTTGGACG 61.166 55.000 20.43 0.08 44.79 4.79
37 38 3.357079 GCACAGTTGGACGCAGGG 61.357 66.667 0.00 0.00 0.00 4.45
70 71 2.609459 CCGATTTAAATGCGTCAGAGCT 59.391 45.455 5.17 0.00 38.13 4.09
91 92 3.285215 GGATAGCCGGAGCGACGA 61.285 66.667 5.05 0.00 46.67 4.20
92 93 2.051166 GATAGCCGGAGCGACGAC 60.051 66.667 5.05 0.00 46.67 4.34
93 94 3.858632 GATAGCCGGAGCGACGACG 62.859 68.421 5.05 2.12 46.67 5.12
131 137 3.970410 CCCTTGAGCCTGCCCACA 61.970 66.667 0.00 0.00 0.00 4.17
223 229 0.110823 AAAAGCTCGTAACGCAAGCG 60.111 50.000 13.50 13.50 46.03 4.68
228 234 0.110823 CTCGTAACGCAAGCGCTTTT 60.111 50.000 22.51 15.36 44.19 2.27
229 235 0.305313 TCGTAACGCAAGCGCTTTTT 59.695 45.000 22.51 15.98 44.19 1.94
230 236 0.695410 CGTAACGCAAGCGCTTTTTC 59.305 50.000 22.51 11.66 44.19 2.29
231 237 0.695410 GTAACGCAAGCGCTTTTTCG 59.305 50.000 22.51 24.23 44.19 3.46
240 246 1.081442 CGCTTTTTCGCTTGTCCCC 60.081 57.895 0.00 0.00 0.00 4.81
243 249 0.517316 CTTTTTCGCTTGTCCCCTCG 59.483 55.000 0.00 0.00 0.00 4.63
295 301 1.729838 GACGCTATGGATCGACGCC 60.730 63.158 0.00 0.00 0.00 5.68
296 302 2.335011 CGCTATGGATCGACGCCA 59.665 61.111 10.90 10.90 40.24 5.69
298 304 1.347097 CGCTATGGATCGACGCCATG 61.347 60.000 24.56 17.21 45.39 3.66
299 305 1.016130 GCTATGGATCGACGCCATGG 61.016 60.000 24.56 22.85 45.39 3.66
300 306 0.603065 CTATGGATCGACGCCATGGA 59.397 55.000 24.56 10.36 44.46 3.41
303 309 2.658593 GATCGACGCCATGGACGG 60.659 66.667 25.35 13.23 34.00 4.79
304 310 3.133767 GATCGACGCCATGGACGGA 62.134 63.158 25.35 16.99 34.00 4.69
305 311 3.426117 ATCGACGCCATGGACGGAC 62.426 63.158 25.35 18.86 34.00 4.79
341 351 1.810532 GTTCGGCACACCCAACAAA 59.189 52.632 0.00 0.00 0.00 2.83
343 353 0.895530 TTCGGCACACCCAACAAAAA 59.104 45.000 0.00 0.00 0.00 1.94
385 397 4.082523 CTCGGTCACATGCCCGGT 62.083 66.667 16.24 0.00 44.32 5.28
415 439 2.348998 CAGCTTTGACGGCCCTCT 59.651 61.111 0.00 0.00 0.00 3.69
417 441 0.036388 CAGCTTTGACGGCCCTCTAA 60.036 55.000 0.00 0.00 0.00 2.10
427 451 0.101219 GGCCCTCTAAAGCGCATTTG 59.899 55.000 11.47 5.10 32.01 2.32
429 453 0.810648 CCCTCTAAAGCGCATTTGCA 59.189 50.000 11.47 0.00 42.21 4.08
430 454 1.468054 CCCTCTAAAGCGCATTTGCAC 60.468 52.381 11.47 0.00 42.21 4.57
431 455 1.527696 CTCTAAAGCGCATTTGCACG 58.472 50.000 11.47 0.00 42.21 5.34
437 461 2.645628 CGCATTTGCACGCGCTAG 60.646 61.111 5.73 0.00 45.57 3.42
438 462 2.277501 GCATTTGCACGCGCTAGG 60.278 61.111 5.73 0.00 41.59 3.02
439 463 2.749865 GCATTTGCACGCGCTAGGA 61.750 57.895 5.73 0.00 41.59 2.94
440 464 1.060937 CATTTGCACGCGCTAGGAC 59.939 57.895 5.73 0.00 39.64 3.85
441 465 2.452813 ATTTGCACGCGCTAGGACG 61.453 57.895 5.73 0.00 39.64 4.79
442 466 2.829043 ATTTGCACGCGCTAGGACGA 62.829 55.000 5.73 0.00 39.64 4.20
443 467 3.964221 TTGCACGCGCTAGGACGAG 62.964 63.158 5.73 0.00 39.64 4.18
445 469 3.506096 CACGCGCTAGGACGAGGA 61.506 66.667 5.73 0.00 37.15 3.71
446 470 2.516460 ACGCGCTAGGACGAGGAT 60.516 61.111 5.73 0.00 37.15 3.24
447 471 2.252855 CGCGCTAGGACGAGGATC 59.747 66.667 5.56 0.00 34.06 3.36
458 482 4.713946 GAGGATCGCCCAAACACA 57.286 55.556 0.00 0.00 37.41 3.72
459 483 2.471255 GAGGATCGCCCAAACACAG 58.529 57.895 0.00 0.00 37.41 3.66
460 484 1.648467 GAGGATCGCCCAAACACAGC 61.648 60.000 0.00 0.00 37.41 4.40
461 485 1.675641 GGATCGCCCAAACACAGCT 60.676 57.895 0.00 0.00 34.14 4.24
462 486 1.244019 GGATCGCCCAAACACAGCTT 61.244 55.000 0.00 0.00 34.14 3.74
463 487 0.169009 GATCGCCCAAACACAGCTTC 59.831 55.000 0.00 0.00 0.00 3.86
464 488 0.537143 ATCGCCCAAACACAGCTTCA 60.537 50.000 0.00 0.00 0.00 3.02
465 489 0.537143 TCGCCCAAACACAGCTTCAT 60.537 50.000 0.00 0.00 0.00 2.57
466 490 0.314935 CGCCCAAACACAGCTTCATT 59.685 50.000 0.00 0.00 0.00 2.57
467 491 1.269726 CGCCCAAACACAGCTTCATTT 60.270 47.619 0.00 0.00 0.00 2.32
468 492 2.407090 GCCCAAACACAGCTTCATTTC 58.593 47.619 0.00 0.00 0.00 2.17
469 493 2.867647 GCCCAAACACAGCTTCATTTCC 60.868 50.000 0.00 0.00 0.00 3.13
470 494 2.364970 CCCAAACACAGCTTCATTTCCA 59.635 45.455 0.00 0.00 0.00 3.53
471 495 3.553508 CCCAAACACAGCTTCATTTCCAG 60.554 47.826 0.00 0.00 0.00 3.86
472 496 3.054878 CAAACACAGCTTCATTTCCAGC 58.945 45.455 0.00 0.00 36.16 4.85
473 497 1.251251 ACACAGCTTCATTTCCAGCC 58.749 50.000 0.00 0.00 36.62 4.85
474 498 0.169672 CACAGCTTCATTTCCAGCCG 59.830 55.000 0.00 0.00 36.62 5.52
475 499 0.962356 ACAGCTTCATTTCCAGCCGG 60.962 55.000 0.00 0.00 36.62 6.13
476 500 0.677731 CAGCTTCATTTCCAGCCGGA 60.678 55.000 5.05 0.00 40.60 5.14
477 501 0.678048 AGCTTCATTTCCAGCCGGAC 60.678 55.000 5.05 0.00 42.67 4.79
478 502 1.657751 GCTTCATTTCCAGCCGGACC 61.658 60.000 5.05 0.00 42.67 4.46
479 503 0.035056 CTTCATTTCCAGCCGGACCT 60.035 55.000 5.05 0.00 42.67 3.85
480 504 0.035439 TTCATTTCCAGCCGGACCTC 60.035 55.000 5.05 0.00 42.67 3.85
481 505 1.198094 TCATTTCCAGCCGGACCTCA 61.198 55.000 5.05 0.00 42.67 3.86
482 506 1.026718 CATTTCCAGCCGGACCTCAC 61.027 60.000 5.05 0.00 42.67 3.51
483 507 1.201429 ATTTCCAGCCGGACCTCACT 61.201 55.000 5.05 0.00 42.67 3.41
484 508 1.827399 TTTCCAGCCGGACCTCACTC 61.827 60.000 5.05 0.00 42.67 3.51
485 509 2.997315 CCAGCCGGACCTCACTCA 60.997 66.667 5.05 0.00 0.00 3.41
486 510 2.362369 CCAGCCGGACCTCACTCAT 61.362 63.158 5.05 0.00 0.00 2.90
487 511 1.142748 CAGCCGGACCTCACTCATC 59.857 63.158 5.05 0.00 0.00 2.92
488 512 1.305297 AGCCGGACCTCACTCATCA 60.305 57.895 5.05 0.00 0.00 3.07
489 513 0.689080 AGCCGGACCTCACTCATCAT 60.689 55.000 5.05 0.00 0.00 2.45
494 518 2.541794 CGGACCTCACTCATCATACGTG 60.542 54.545 0.00 0.00 0.00 4.49
543 568 4.193090 CCAACCACAAACTGTACTGTACA 58.807 43.478 18.77 18.77 37.13 2.90
552 582 4.467198 ACTGTACTGTACATTGTAGGGC 57.533 45.455 19.99 0.00 38.15 5.19
563 593 2.043248 GTAGGGCTGGGTCCTCGA 60.043 66.667 0.00 0.00 36.89 4.04
564 594 2.128507 GTAGGGCTGGGTCCTCGAG 61.129 68.421 5.13 5.13 36.89 4.04
572 606 1.380112 GGGTCCTCGAGGCACTAGT 60.380 63.158 27.39 0.00 41.55 2.57
580 614 3.570125 CCTCGAGGCACTAGTTATCATCA 59.430 47.826 20.67 0.00 41.55 3.07
591 625 4.640789 AGTTATCATCACTCACTCGGAC 57.359 45.455 0.00 0.00 0.00 4.79
597 631 3.285215 ACTCACTCGGACGCACGT 61.285 61.111 0.00 0.00 34.94 4.49
598 632 1.962822 ACTCACTCGGACGCACGTA 60.963 57.895 0.00 0.00 34.94 3.57
599 633 1.511464 CTCACTCGGACGCACGTAC 60.511 63.158 0.00 0.00 34.94 3.67
644 678 4.129737 GCAGCCCAGTCGCGAGTA 62.130 66.667 17.53 0.00 0.00 2.59
645 679 2.202623 CAGCCCAGTCGCGAGTAC 60.203 66.667 17.53 9.32 0.00 2.73
658 692 2.592897 CGCGAGTACTACACACATGAAC 59.407 50.000 0.00 0.00 0.00 3.18
659 693 3.571571 GCGAGTACTACACACATGAACA 58.428 45.455 0.00 0.00 0.00 3.18
675 709 4.386867 TGAACATACTGCTACCACTAGC 57.613 45.455 0.00 0.00 45.19 3.42
706 749 0.249489 GTGCACTCACTCGGTCAGTT 60.249 55.000 10.32 0.00 40.03 3.16
720 768 1.262151 GTCAGTTACTTTGGCGCGAAA 59.738 47.619 16.88 16.88 0.00 3.46
721 769 1.529438 TCAGTTACTTTGGCGCGAAAG 59.471 47.619 34.26 34.26 38.65 2.62
742 793 0.749649 GAGAGAGGCACGGTGATGAT 59.250 55.000 13.29 0.00 0.00 2.45
771 834 2.308690 TGTTTACCCGGGGTGAAAAAG 58.691 47.619 29.08 0.00 36.19 2.27
791 854 1.227674 GGATCCAGCCGCTTCGATT 60.228 57.895 6.95 0.00 0.00 3.34
942 1022 4.899239 CGCCCGTGCTCTCCCATC 62.899 72.222 0.00 0.00 34.43 3.51
943 1023 4.554036 GCCCGTGCTCTCCCATCC 62.554 72.222 0.00 0.00 33.53 3.51
944 1024 4.227134 CCCGTGCTCTCCCATCCG 62.227 72.222 0.00 0.00 0.00 4.18
992 1072 3.447025 GACCCTCGCCTTGATCCGG 62.447 68.421 0.00 0.00 0.00 5.14
993 1073 4.918201 CCCTCGCCTTGATCCGGC 62.918 72.222 11.95 11.95 44.11 6.13
995 1075 3.854669 CTCGCCTTGATCCGGCCT 61.855 66.667 15.23 0.00 44.73 5.19
996 1076 3.798954 CTCGCCTTGATCCGGCCTC 62.799 68.421 15.23 0.00 44.73 4.70
1146 1242 3.799755 CGGAAAAAGGCGGCCGAG 61.800 66.667 33.48 0.00 46.29 4.63
1221 1317 3.692406 GCCGTGGTCGAGGAGGTT 61.692 66.667 0.00 0.00 39.71 3.50
1224 1320 2.273179 CGTGGTCGAGGAGGTTCCA 61.273 63.158 0.00 0.00 39.61 3.53
1311 1407 1.668101 GCCTAGGTGAGACACGAGGG 61.668 65.000 11.31 10.37 38.09 4.30
1312 1408 1.038130 CCTAGGTGAGACACGAGGGG 61.038 65.000 0.00 2.36 35.70 4.79
1341 1437 2.343625 ACTTGCCTTCCTCCTCTTCTT 58.656 47.619 0.00 0.00 0.00 2.52
1342 1438 2.304470 ACTTGCCTTCCTCCTCTTCTTC 59.696 50.000 0.00 0.00 0.00 2.87
1346 1442 4.168101 TGCCTTCCTCCTCTTCTTCTTTA 58.832 43.478 0.00 0.00 0.00 1.85
1422 1522 3.280295 TGAGGAGAGACGATGTTCTACC 58.720 50.000 0.00 0.00 0.00 3.18
1427 1527 4.439016 GGAGAGACGATGTTCTACCAAGTC 60.439 50.000 0.00 0.00 0.00 3.01
1461 1561 3.011517 ACTTCCGATGGCAGGGCT 61.012 61.111 2.63 0.00 0.00 5.19
1463 1563 1.271840 ACTTCCGATGGCAGGGCTTA 61.272 55.000 2.63 0.00 0.00 3.09
1464 1564 0.533755 CTTCCGATGGCAGGGCTTAG 60.534 60.000 2.63 0.00 0.00 2.18
1465 1565 1.271840 TTCCGATGGCAGGGCTTAGT 61.272 55.000 2.63 0.00 0.00 2.24
1466 1566 0.397957 TCCGATGGCAGGGCTTAGTA 60.398 55.000 2.63 0.00 0.00 1.82
1476 1576 4.460034 GGCAGGGCTTAGTAGTACTAGATC 59.540 50.000 9.90 4.16 31.47 2.75
1508 1628 4.004982 GTGTGAGGGGTAAATTTCGCTTA 58.995 43.478 0.00 0.00 0.00 3.09
1509 1629 4.456566 GTGTGAGGGGTAAATTTCGCTTAA 59.543 41.667 0.00 0.00 0.00 1.85
1510 1630 4.456566 TGTGAGGGGTAAATTTCGCTTAAC 59.543 41.667 0.00 0.00 0.00 2.01
1511 1631 4.698780 GTGAGGGGTAAATTTCGCTTAACT 59.301 41.667 0.00 0.00 0.00 2.24
1512 1632 5.876460 GTGAGGGGTAAATTTCGCTTAACTA 59.124 40.000 0.00 0.00 0.00 2.24
1545 1665 3.384789 TCTGGCTAATTCTAGTGCGTGAT 59.615 43.478 0.00 0.00 0.00 3.06
1553 1673 6.902771 AATTCTAGTGCGTGATATCCTAGT 57.097 37.500 0.00 0.00 0.00 2.57
1555 1675 4.325119 TCTAGTGCGTGATATCCTAGTCC 58.675 47.826 0.00 0.00 0.00 3.85
1613 1734 7.759489 ACCTGCTATTTATTTTCAACACTGA 57.241 32.000 0.00 0.00 0.00 3.41
1615 1736 8.806146 ACCTGCTATTTATTTTCAACACTGAAT 58.194 29.630 0.00 0.00 41.22 2.57
1721 1851 2.159128 TGGTTGTTGAGTGCATTTGTGG 60.159 45.455 0.00 0.00 0.00 4.17
1723 1853 1.039068 TGTTGAGTGCATTTGTGGGG 58.961 50.000 0.00 0.00 0.00 4.96
1812 1971 3.230134 ACCTATCTCTGGTGATGCTCTC 58.770 50.000 0.00 0.00 36.30 3.20
1813 1972 2.228582 CCTATCTCTGGTGATGCTCTCG 59.771 54.545 0.00 0.00 0.00 4.04
1905 2065 8.158169 TGATGTATTGCCATCTTGAGATTTAC 57.842 34.615 0.00 0.00 41.47 2.01
1906 2066 7.994911 TGATGTATTGCCATCTTGAGATTTACT 59.005 33.333 0.00 0.00 41.47 2.24
1907 2067 7.792374 TGTATTGCCATCTTGAGATTTACTC 57.208 36.000 0.00 0.00 45.11 2.59
1908 2068 6.767902 TGTATTGCCATCTTGAGATTTACTCC 59.232 38.462 0.00 0.00 44.34 3.85
1909 2069 4.156455 TGCCATCTTGAGATTTACTCCC 57.844 45.455 0.00 0.00 44.34 4.30
1910 2070 3.782523 TGCCATCTTGAGATTTACTCCCT 59.217 43.478 0.00 0.00 44.34 4.20
1911 2071 4.141620 TGCCATCTTGAGATTTACTCCCTC 60.142 45.833 0.00 0.00 44.34 4.30
1912 2072 4.745172 GCCATCTTGAGATTTACTCCCTCC 60.745 50.000 0.00 0.00 44.34 4.30
1914 2074 4.354208 TCTTGAGATTTACTCCCTCCCT 57.646 45.455 0.00 0.00 44.34 4.20
1916 2076 4.717280 TCTTGAGATTTACTCCCTCCCTTC 59.283 45.833 0.00 0.00 44.34 3.46
1917 2077 3.385115 TGAGATTTACTCCCTCCCTTCC 58.615 50.000 0.00 0.00 44.34 3.46
1918 2078 3.014110 TGAGATTTACTCCCTCCCTTCCT 59.986 47.826 0.00 0.00 44.34 3.36
1919 2079 4.234458 TGAGATTTACTCCCTCCCTTCCTA 59.766 45.833 0.00 0.00 44.34 2.94
1920 2080 5.217400 GAGATTTACTCCCTCCCTTCCTAA 58.783 45.833 0.00 0.00 39.53 2.69
1921 2081 5.610791 AGATTTACTCCCTCCCTTCCTAAA 58.389 41.667 0.00 0.00 0.00 1.85
1922 2082 6.221089 AGATTTACTCCCTCCCTTCCTAAAT 58.779 40.000 0.00 0.00 0.00 1.40
1923 2083 7.379139 AGATTTACTCCCTCCCTTCCTAAATA 58.621 38.462 0.00 0.00 0.00 1.40
1924 2084 8.025696 AGATTTACTCCCTCCCTTCCTAAATAT 58.974 37.037 0.00 0.00 0.00 1.28
1925 2085 8.597313 ATTTACTCCCTCCCTTCCTAAATATT 57.403 34.615 0.00 0.00 0.00 1.28
1926 2086 8.415392 TTTACTCCCTCCCTTCCTAAATATTT 57.585 34.615 5.89 5.89 0.00 1.40
1927 2087 6.267492 ACTCCCTCCCTTCCTAAATATTTG 57.733 41.667 11.05 1.40 0.00 2.32
1928 2088 5.736616 ACTCCCTCCCTTCCTAAATATTTGT 59.263 40.000 11.05 0.00 0.00 2.83
1929 2089 6.126449 ACTCCCTCCCTTCCTAAATATTTGTC 60.126 42.308 11.05 0.00 0.00 3.18
1930 2090 5.976870 TCCCTCCCTTCCTAAATATTTGTCT 59.023 40.000 11.05 0.00 0.00 3.41
1931 2091 6.450352 TCCCTCCCTTCCTAAATATTTGTCTT 59.550 38.462 11.05 0.00 0.00 3.01
1932 2092 7.036132 TCCCTCCCTTCCTAAATATTTGTCTTT 60.036 37.037 11.05 0.00 0.00 2.52
1933 2093 7.285629 CCCTCCCTTCCTAAATATTTGTCTTTC 59.714 40.741 11.05 0.00 0.00 2.62
1934 2094 8.055790 CCTCCCTTCCTAAATATTTGTCTTTCT 58.944 37.037 11.05 0.00 0.00 2.52
1961 2121 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
1962 2122 8.475331 AGATTTTAACAAGTGACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
1963 2123 8.308931 AGATTTTAACAAGTGACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
1964 2124 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
1965 2125 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1966 2126 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1967 2127 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1968 2128 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1969 2129 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1970 2130 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1971 2131 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1972 2132 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1973 2133 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1974 2134 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1975 2135 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1976 2136 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1977 2137 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1978 2138 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1979 2139 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1980 2140 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1981 2141 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1982 2142 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1983 2143 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1984 2144 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1997 2157 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
1998 2158 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
1999 2159 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
2015 2175 8.763049 AACATGTCTATATACATCCGAATGTG 57.237 34.615 0.00 0.00 45.72 3.21
2016 2176 7.323420 ACATGTCTATATACATCCGAATGTGG 58.677 38.462 0.00 0.00 45.72 4.17
2017 2177 6.911250 TGTCTATATACATCCGAATGTGGT 57.089 37.500 0.00 0.00 45.72 4.16
2018 2178 8.466798 CATGTCTATATACATCCGAATGTGGTA 58.533 37.037 0.00 0.00 45.72 3.25
2019 2179 8.051901 TGTCTATATACATCCGAATGTGGTAG 57.948 38.462 0.00 0.00 45.72 3.18
2020 2180 7.668469 TGTCTATATACATCCGAATGTGGTAGT 59.332 37.037 0.00 0.00 45.72 2.73
2021 2181 8.182881 GTCTATATACATCCGAATGTGGTAGTC 58.817 40.741 0.00 0.00 45.72 2.59
2022 2182 2.981859 ACATCCGAATGTGGTAGTCC 57.018 50.000 0.00 0.00 44.51 3.85
2023 2183 2.184533 ACATCCGAATGTGGTAGTCCA 58.815 47.619 0.00 0.00 44.51 4.02
2024 2184 2.771943 ACATCCGAATGTGGTAGTCCAT 59.228 45.455 0.00 0.00 44.51 3.41
2025 2185 3.199946 ACATCCGAATGTGGTAGTCCATT 59.800 43.478 0.00 0.00 44.51 3.16
2026 2186 3.992943 TCCGAATGTGGTAGTCCATTT 57.007 42.857 0.00 0.00 46.20 2.32
2027 2187 3.605634 TCCGAATGTGGTAGTCCATTTG 58.394 45.455 0.00 0.00 46.20 2.32
2028 2188 3.262151 TCCGAATGTGGTAGTCCATTTGA 59.738 43.478 0.00 0.00 46.20 2.69
2029 2189 4.006989 CCGAATGTGGTAGTCCATTTGAA 58.993 43.478 0.00 0.00 46.20 2.69
2030 2190 4.457603 CCGAATGTGGTAGTCCATTTGAAA 59.542 41.667 0.00 0.00 46.20 2.69
2031 2191 5.125417 CCGAATGTGGTAGTCCATTTGAAAT 59.875 40.000 0.00 0.00 46.20 2.17
2032 2192 6.258160 CGAATGTGGTAGTCCATTTGAAATC 58.742 40.000 0.00 0.00 46.20 2.17
2033 2193 6.094048 CGAATGTGGTAGTCCATTTGAAATCT 59.906 38.462 0.00 0.00 46.20 2.40
2034 2194 7.396540 AATGTGGTAGTCCATTTGAAATCTC 57.603 36.000 0.00 0.00 46.20 2.75
2035 2195 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2036 2196 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2037 2197 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2038 2198 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2039 2199 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2040 2200 9.231297 TGGTAGTCCATTTGAAATCTCTAAAAG 57.769 33.333 0.00 0.00 39.03 2.27
2041 2201 9.449719 GGTAGTCCATTTGAAATCTCTAAAAGA 57.550 33.333 0.00 0.00 38.72 2.52
2043 2203 8.924511 AGTCCATTTGAAATCTCTAAAAGACA 57.075 30.769 0.00 0.00 36.65 3.41
2044 2204 9.354673 AGTCCATTTGAAATCTCTAAAAGACAA 57.645 29.630 0.00 0.00 36.65 3.18
2045 2205 9.965824 GTCCATTTGAAATCTCTAAAAGACAAA 57.034 29.630 0.00 0.00 36.65 2.83
2059 2219 9.947433 TCTAAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 37.29 4.69
2061 2221 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2062 2222 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2063 2223 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2064 2224 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2065 2225 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2066 2226 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2067 2227 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
2068 2228 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
2069 2229 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
2070 2230 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
2071 2231 1.288335 AGGAACGGAGGGAGTAGATGT 59.712 52.381 0.00 0.00 0.00 3.06
2072 2232 2.108970 GGAACGGAGGGAGTAGATGTT 58.891 52.381 0.00 0.00 0.00 2.71
2073 2233 3.053095 AGGAACGGAGGGAGTAGATGTTA 60.053 47.826 0.00 0.00 0.00 2.41
2074 2234 3.896272 GGAACGGAGGGAGTAGATGTTAT 59.104 47.826 0.00 0.00 0.00 1.89
2075 2235 4.262079 GGAACGGAGGGAGTAGATGTTATG 60.262 50.000 0.00 0.00 0.00 1.90
2076 2236 2.628657 ACGGAGGGAGTAGATGTTATGC 59.371 50.000 0.00 0.00 0.00 3.14
2077 2237 2.028930 CGGAGGGAGTAGATGTTATGCC 60.029 54.545 0.00 0.00 0.00 4.40
2078 2238 2.303311 GGAGGGAGTAGATGTTATGCCC 59.697 54.545 0.00 0.00 0.00 5.36
2090 2250 2.513738 TGTTATGCCCTATTGCCCTTCT 59.486 45.455 0.00 0.00 0.00 2.85
2165 2328 9.143631 CCATTGAAATAAAAGAATCTTGTGACC 57.856 33.333 0.00 0.00 0.00 4.02
2570 2733 9.780186 CATCATAGATATCATATTGCTGGATGT 57.220 33.333 5.32 0.00 0.00 3.06
2629 2794 6.930667 TCTTTTCTTTTGCTAACCGTAGTT 57.069 33.333 0.00 0.00 40.15 2.24
2631 2796 5.678132 TTTCTTTTGCTAACCGTAGTTCC 57.322 39.130 0.00 0.00 37.42 3.62
2636 2801 5.927281 TTTGCTAACCGTAGTTCCTAGAT 57.073 39.130 0.00 0.00 37.42 1.98
2679 2844 6.134535 ACCCAATGATGTTGTTCCTAGTAA 57.865 37.500 0.00 0.00 0.00 2.24
2712 2877 9.865321 TTCTGTTATTACTTATATATGTCCGCC 57.135 33.333 4.64 0.00 0.00 6.13
2741 2906 5.510520 GCATGTTGTTCCCAAGGTTAATTGA 60.511 40.000 0.00 0.00 31.55 2.57
2742 2907 6.700352 CATGTTGTTCCCAAGGTTAATTGAT 58.300 36.000 0.00 0.00 31.55 2.57
2743 2908 6.095432 TGTTGTTCCCAAGGTTAATTGATG 57.905 37.500 0.00 0.00 31.55 3.07
2744 2909 5.600484 TGTTGTTCCCAAGGTTAATTGATGT 59.400 36.000 0.00 0.00 31.55 3.06
2745 2910 6.098982 TGTTGTTCCCAAGGTTAATTGATGTT 59.901 34.615 0.00 0.00 31.55 2.71
2746 2911 6.739331 TGTTCCCAAGGTTAATTGATGTTT 57.261 33.333 0.00 0.00 31.55 2.83
2747 2912 6.520272 TGTTCCCAAGGTTAATTGATGTTTG 58.480 36.000 0.00 0.00 31.55 2.93
2748 2913 6.098982 TGTTCCCAAGGTTAATTGATGTTTGT 59.901 34.615 0.00 0.00 31.55 2.83
2749 2914 7.287927 TGTTCCCAAGGTTAATTGATGTTTGTA 59.712 33.333 0.00 0.00 31.55 2.41
2750 2915 7.222000 TCCCAAGGTTAATTGATGTTTGTAC 57.778 36.000 0.00 0.00 31.55 2.90
2751 2916 6.778069 TCCCAAGGTTAATTGATGTTTGTACA 59.222 34.615 0.00 0.00 38.95 2.90
2752 2917 7.287927 TCCCAAGGTTAATTGATGTTTGTACAA 59.712 33.333 3.59 3.59 37.91 2.41
2753 2918 7.598493 CCCAAGGTTAATTGATGTTTGTACAAG 59.402 37.037 8.56 0.00 37.91 3.16
2754 2919 8.356657 CCAAGGTTAATTGATGTTTGTACAAGA 58.643 33.333 8.56 0.05 37.91 3.02
2755 2920 9.743057 CAAGGTTAATTGATGTTTGTACAAGAA 57.257 29.630 8.56 1.59 37.91 2.52
2828 3001 6.591935 ACTCTGTCAGAAGGAAACACAATTA 58.408 36.000 3.67 0.00 0.00 1.40
2837 3010 6.431234 AGAAGGAAACACAATTATGGTCTCAC 59.569 38.462 0.00 0.00 0.00 3.51
2840 3013 4.380843 AACACAATTATGGTCTCACCCA 57.619 40.909 0.00 0.00 37.50 4.51
2861 3034 7.865385 CACCCATTTCATTACCGGTTAATATTG 59.135 37.037 15.04 0.99 0.00 1.90
2900 3083 6.767902 TCCATATTCCTAGAGTTGAATTGTGC 59.232 38.462 0.00 0.00 33.46 4.57
2916 3099 4.662468 TTGTGCAACTGGAAAGCATTTA 57.338 36.364 0.00 0.00 40.78 1.40
2918 3101 4.558178 TGTGCAACTGGAAAGCATTTATG 58.442 39.130 0.00 0.00 40.78 1.90
2945 3128 2.787473 CCTGGATGGTTAGCTGTTCA 57.213 50.000 0.00 0.00 0.00 3.18
2946 3129 2.359900 CCTGGATGGTTAGCTGTTCAC 58.640 52.381 0.00 0.00 0.00 3.18
2947 3130 2.359900 CTGGATGGTTAGCTGTTCACC 58.640 52.381 0.00 0.00 0.00 4.02
2948 3131 1.702401 TGGATGGTTAGCTGTTCACCA 59.298 47.619 10.32 10.32 44.75 4.17
2949 3132 2.107378 TGGATGGTTAGCTGTTCACCAA 59.893 45.455 11.56 0.00 43.85 3.67
2950 3133 3.245229 TGGATGGTTAGCTGTTCACCAAT 60.245 43.478 11.56 3.27 43.85 3.16
2951 3134 3.763897 GGATGGTTAGCTGTTCACCAATT 59.236 43.478 11.56 0.00 43.85 2.32
2952 3135 4.380867 GGATGGTTAGCTGTTCACCAATTG 60.381 45.833 11.56 0.00 43.85 2.32
2953 3136 3.561143 TGGTTAGCTGTTCACCAATTGT 58.439 40.909 4.43 0.00 37.66 2.71
2954 3137 3.568007 TGGTTAGCTGTTCACCAATTGTC 59.432 43.478 4.43 0.00 37.66 3.18
2955 3138 3.568007 GGTTAGCTGTTCACCAATTGTCA 59.432 43.478 4.43 0.00 0.00 3.58
2956 3139 4.218417 GGTTAGCTGTTCACCAATTGTCAT 59.782 41.667 4.43 0.00 0.00 3.06
2957 3140 5.393962 GTTAGCTGTTCACCAATTGTCATC 58.606 41.667 4.43 0.00 0.00 2.92
2958 3141 3.759581 AGCTGTTCACCAATTGTCATCT 58.240 40.909 4.43 0.00 0.00 2.90
2959 3142 3.504906 AGCTGTTCACCAATTGTCATCTG 59.495 43.478 4.43 0.00 0.00 2.90
2960 3143 3.254166 GCTGTTCACCAATTGTCATCTGT 59.746 43.478 4.43 0.00 0.00 3.41
2961 3144 4.455533 GCTGTTCACCAATTGTCATCTGTA 59.544 41.667 4.43 0.00 0.00 2.74
2962 3145 5.391310 GCTGTTCACCAATTGTCATCTGTAG 60.391 44.000 4.43 0.00 0.00 2.74
2963 3146 5.620206 TGTTCACCAATTGTCATCTGTAGT 58.380 37.500 4.43 0.00 0.00 2.73
2964 3147 6.764379 TGTTCACCAATTGTCATCTGTAGTA 58.236 36.000 4.43 0.00 0.00 1.82
2965 3148 6.649141 TGTTCACCAATTGTCATCTGTAGTAC 59.351 38.462 4.43 0.00 0.00 2.73
2966 3149 5.407502 TCACCAATTGTCATCTGTAGTACG 58.592 41.667 4.43 0.00 0.00 3.67
2967 3150 5.047590 TCACCAATTGTCATCTGTAGTACGT 60.048 40.000 4.43 0.00 0.00 3.57
2968 3151 5.062183 CACCAATTGTCATCTGTAGTACGTG 59.938 44.000 4.43 0.00 0.00 4.49
2969 3152 5.168569 CCAATTGTCATCTGTAGTACGTGT 58.831 41.667 4.43 0.00 0.00 4.49
2970 3153 5.637810 CCAATTGTCATCTGTAGTACGTGTT 59.362 40.000 4.43 0.00 0.00 3.32
2971 3154 6.401047 CCAATTGTCATCTGTAGTACGTGTTG 60.401 42.308 4.43 0.00 0.00 3.33
2972 3155 4.841443 TGTCATCTGTAGTACGTGTTGT 57.159 40.909 0.00 0.00 0.00 3.32
2973 3156 5.190992 TGTCATCTGTAGTACGTGTTGTT 57.809 39.130 0.00 0.00 0.00 2.83
2974 3157 5.593968 TGTCATCTGTAGTACGTGTTGTTT 58.406 37.500 0.00 0.00 0.00 2.83
2975 3158 6.044046 TGTCATCTGTAGTACGTGTTGTTTT 58.956 36.000 0.00 0.00 0.00 2.43
2990 3173 7.011576 ACGTGTTGTTTTTCTGTGTGTATATGA 59.988 33.333 0.00 0.00 0.00 2.15
3000 3183 7.290110 TCTGTGTGTATATGAGACATAAGGG 57.710 40.000 0.00 0.00 33.19 3.95
3012 3195 7.443302 TGAGACATAAGGGAGAATTTCAGAT 57.557 36.000 0.00 0.00 0.00 2.90
3013 3196 7.865820 TGAGACATAAGGGAGAATTTCAGATT 58.134 34.615 0.00 0.00 0.00 2.40
3014 3197 7.989741 TGAGACATAAGGGAGAATTTCAGATTC 59.010 37.037 0.00 0.00 0.00 2.52
3015 3198 7.865820 AGACATAAGGGAGAATTTCAGATTCA 58.134 34.615 0.00 0.00 0.00 2.57
3016 3199 7.992033 AGACATAAGGGAGAATTTCAGATTCAG 59.008 37.037 0.00 0.00 0.00 3.02
3017 3200 7.865820 ACATAAGGGAGAATTTCAGATTCAGA 58.134 34.615 0.00 0.00 0.00 3.27
3057 3240 8.445275 TCATTTCTTGCACAACTAGAGTAAAA 57.555 30.769 0.00 0.00 31.59 1.52
3058 3241 8.559536 TCATTTCTTGCACAACTAGAGTAAAAG 58.440 33.333 0.00 2.81 31.59 2.27
3061 3244 9.772973 TTTCTTGCACAACTAGAGTAAAAGATA 57.227 29.630 0.00 1.19 31.59 1.98
3063 3246 9.944376 TCTTGCACAACTAGAGTAAAAGATATT 57.056 29.630 0.00 0.00 0.00 1.28
3113 3296 7.863901 AGAAATAAGCAGATATCAGGGTACT 57.136 36.000 5.32 0.00 0.00 2.73
3122 3305 7.934120 AGCAGATATCAGGGTACTGTAAAATTC 59.066 37.037 5.32 0.00 45.14 2.17
3123 3306 7.934120 GCAGATATCAGGGTACTGTAAAATTCT 59.066 37.037 5.32 0.00 45.14 2.40
3167 3353 6.663093 AGTCAATTGCTAATGGGATTGTTGTA 59.337 34.615 0.00 0.00 0.00 2.41
3432 3618 0.682209 ATGCTGAAGCCCGCAAGATT 60.682 50.000 0.00 0.00 39.89 2.40
3489 3675 2.435805 TGCTCCAACTGTTCAGAAGTCT 59.564 45.455 6.83 0.00 0.00 3.24
3492 3678 4.262249 GCTCCAACTGTTCAGAAGTCTACT 60.262 45.833 6.83 0.00 0.00 2.57
3507 3693 1.276421 TCTACTCTGAAGCCAACTGCC 59.724 52.381 0.00 0.00 42.71 4.85
3621 3807 3.629855 TGTTCGCCTTCAATGACAAGAAA 59.370 39.130 0.00 0.00 0.00 2.52
3630 3816 3.250762 TCAATGACAAGAAAGTTCCTGCG 59.749 43.478 0.00 0.00 0.00 5.18
3759 3945 0.324943 CTGACTTTGGGTGGGACGAT 59.675 55.000 0.00 0.00 0.00 3.73
3764 3950 1.131303 TTTGGGTGGGACGATGAGGT 61.131 55.000 0.00 0.00 0.00 3.85
3783 3969 1.141019 CATGACCCCGGACTACACG 59.859 63.158 0.73 0.00 0.00 4.49
3795 3981 0.514691 ACTACACGTCCGTCTTCGTC 59.485 55.000 0.00 0.00 38.23 4.20
3905 4091 0.610232 GTGCTGCCTCAGGGAAATGT 60.610 55.000 0.00 0.00 33.58 2.71
3960 4146 4.890088 TGAAGTACTCGTTGCCTTATGTT 58.110 39.130 0.00 0.00 0.00 2.71
4092 4279 3.071167 GTGGTTACTGAGGGTTCTTGTCT 59.929 47.826 0.00 0.00 0.00 3.41
4128 4315 1.745087 AGCACAAATGTAAGCCATCCG 59.255 47.619 0.00 0.00 31.75 4.18
4143 4340 2.868583 CCATCCGTACTGCATTCTCTTG 59.131 50.000 0.00 0.00 0.00 3.02
4156 4353 4.689345 GCATTCTCTTGCATGCTTTTCTTT 59.311 37.500 20.33 0.00 42.25 2.52
4157 4354 5.389516 GCATTCTCTTGCATGCTTTTCTTTG 60.390 40.000 20.33 10.29 42.25 2.77
4158 4355 4.924305 TCTCTTGCATGCTTTTCTTTGT 57.076 36.364 20.33 0.00 0.00 2.83
4159 4356 4.613944 TCTCTTGCATGCTTTTCTTTGTG 58.386 39.130 20.33 1.80 0.00 3.33
4160 4357 3.125316 TCTTGCATGCTTTTCTTTGTGC 58.875 40.909 20.33 0.00 0.00 4.57
4161 4358 2.598686 TGCATGCTTTTCTTTGTGCA 57.401 40.000 20.33 0.00 39.94 4.57
4162 4359 2.902523 TGCATGCTTTTCTTTGTGCAA 58.097 38.095 20.33 0.00 39.36 4.08
4163 4360 3.268330 TGCATGCTTTTCTTTGTGCAAA 58.732 36.364 20.33 0.00 39.36 3.68
4164 4361 3.688185 TGCATGCTTTTCTTTGTGCAAAA 59.312 34.783 20.33 0.00 39.36 2.44
4165 4362 4.335874 TGCATGCTTTTCTTTGTGCAAAAT 59.664 33.333 20.33 0.00 39.36 1.82
4166 4363 5.526479 TGCATGCTTTTCTTTGTGCAAAATA 59.474 32.000 20.33 0.00 39.36 1.40
4167 4364 5.847515 GCATGCTTTTCTTTGTGCAAAATAC 59.152 36.000 11.37 0.00 38.96 1.89
4168 4365 6.293027 GCATGCTTTTCTTTGTGCAAAATACT 60.293 34.615 11.37 0.00 38.96 2.12
4169 4366 6.826893 TGCTTTTCTTTGTGCAAAATACTC 57.173 33.333 0.00 0.00 32.12 2.59
4170 4367 5.752955 TGCTTTTCTTTGTGCAAAATACTCC 59.247 36.000 0.00 0.00 32.12 3.85
4171 4368 5.752955 GCTTTTCTTTGTGCAAAATACTCCA 59.247 36.000 0.00 0.00 0.00 3.86
4172 4369 6.074142 GCTTTTCTTTGTGCAAAATACTCCAG 60.074 38.462 0.00 0.00 0.00 3.86
4173 4370 5.452078 TTCTTTGTGCAAAATACTCCAGG 57.548 39.130 0.00 0.00 0.00 4.45
4174 4371 3.826157 TCTTTGTGCAAAATACTCCAGGG 59.174 43.478 0.00 0.00 0.00 4.45
4175 4372 3.517296 TTGTGCAAAATACTCCAGGGA 57.483 42.857 0.00 0.00 0.00 4.20
4176 4373 2.790433 TGTGCAAAATACTCCAGGGAC 58.210 47.619 0.00 0.00 0.00 4.46
4177 4374 2.092323 GTGCAAAATACTCCAGGGACC 58.908 52.381 0.00 0.00 0.00 4.46
4178 4375 1.992557 TGCAAAATACTCCAGGGACCT 59.007 47.619 0.00 0.00 0.00 3.85
4179 4376 3.054655 GTGCAAAATACTCCAGGGACCTA 60.055 47.826 0.00 0.00 0.00 3.08
4180 4377 3.589735 TGCAAAATACTCCAGGGACCTAA 59.410 43.478 0.00 0.00 0.00 2.69
4181 4378 4.043561 TGCAAAATACTCCAGGGACCTAAA 59.956 41.667 0.00 0.00 0.00 1.85
4182 4379 5.201243 GCAAAATACTCCAGGGACCTAAAT 58.799 41.667 0.00 0.00 0.00 1.40
4183 4380 5.067805 GCAAAATACTCCAGGGACCTAAATG 59.932 44.000 0.00 0.00 0.00 2.32
4184 4381 4.439253 AATACTCCAGGGACCTAAATGC 57.561 45.455 0.00 0.00 0.00 3.56
4185 4382 1.668826 ACTCCAGGGACCTAAATGCA 58.331 50.000 0.00 0.00 0.00 3.96
4186 4383 1.561542 ACTCCAGGGACCTAAATGCAG 59.438 52.381 0.00 0.00 0.00 4.41
4187 4384 1.561542 CTCCAGGGACCTAAATGCAGT 59.438 52.381 0.00 0.00 0.00 4.40
4188 4385 2.771943 CTCCAGGGACCTAAATGCAGTA 59.228 50.000 0.00 0.00 0.00 2.74
4189 4386 3.392616 CTCCAGGGACCTAAATGCAGTAT 59.607 47.826 0.00 0.00 0.00 2.12
4190 4387 3.391296 TCCAGGGACCTAAATGCAGTATC 59.609 47.826 0.00 0.00 0.00 2.24
4191 4388 3.393800 CAGGGACCTAAATGCAGTATCG 58.606 50.000 0.00 0.00 0.00 2.92
4192 4389 3.069586 CAGGGACCTAAATGCAGTATCGA 59.930 47.826 0.00 0.00 0.00 3.59
4193 4390 3.322254 AGGGACCTAAATGCAGTATCGAG 59.678 47.826 0.00 0.00 0.00 4.04
4194 4391 3.069729 GGGACCTAAATGCAGTATCGAGT 59.930 47.826 0.00 0.00 0.00 4.18
4195 4392 4.280174 GGGACCTAAATGCAGTATCGAGTA 59.720 45.833 0.00 0.00 0.00 2.59
4196 4393 5.462405 GGACCTAAATGCAGTATCGAGTAG 58.538 45.833 0.00 0.00 0.00 2.57
4275 4472 1.588082 CCTTGCATGTGGCCAAGAC 59.412 57.895 7.24 0.00 43.89 3.01
4314 4512 2.041485 TGTGGCCAAGATGAAGGATTGA 59.959 45.455 7.24 0.00 0.00 2.57
4347 4545 2.768698 TGTTTCGTAGCCGGATCAAAA 58.231 42.857 5.05 0.00 33.95 2.44
4353 4551 2.159142 CGTAGCCGGATCAAAACCTAGT 60.159 50.000 5.05 0.00 0.00 2.57
4360 4558 4.273480 CCGGATCAAAACCTAGTTATGCTG 59.727 45.833 0.00 0.00 0.00 4.41
4502 4702 5.065914 GGTCATATGCCTGATGTAATGTGT 58.934 41.667 0.00 0.00 0.00 3.72
4514 4714 7.360353 CCTGATGTAATGTGTGTGTTGAGTAAG 60.360 40.741 0.00 0.00 0.00 2.34
4516 4716 8.145122 TGATGTAATGTGTGTGTTGAGTAAGTA 58.855 33.333 0.00 0.00 0.00 2.24
4518 4718 7.266400 TGTAATGTGTGTGTTGAGTAAGTACA 58.734 34.615 0.00 0.00 0.00 2.90
4519 4719 7.929245 TGTAATGTGTGTGTTGAGTAAGTACAT 59.071 33.333 0.00 0.00 0.00 2.29
4520 4720 6.785488 ATGTGTGTGTTGAGTAAGTACATG 57.215 37.500 0.00 0.00 0.00 3.21
4521 4721 5.053811 TGTGTGTGTTGAGTAAGTACATGG 58.946 41.667 0.00 0.00 0.00 3.66
4523 4723 5.526111 GTGTGTGTTGAGTAAGTACATGGTT 59.474 40.000 0.00 0.00 0.00 3.67
4524 4724 5.525745 TGTGTGTTGAGTAAGTACATGGTTG 59.474 40.000 0.00 0.00 0.00 3.77
4527 4727 4.513692 TGTTGAGTAAGTACATGGTTGTGC 59.486 41.667 0.00 0.00 38.60 4.57
4572 4779 0.249031 GGCGTTTTGCTGAGTGCTTT 60.249 50.000 0.00 0.00 45.43 3.51
4585 4792 1.131771 GTGCTTTGCTTTCGCTTTCC 58.868 50.000 0.00 0.00 36.97 3.13
4638 4845 5.132502 TGACCAGATCAACAACTTCACATT 58.867 37.500 0.00 0.00 33.02 2.71
4727 4939 4.511838 TTGGTAGGTGGCCAAAGC 57.488 55.556 7.24 6.63 42.39 3.51
4728 4940 1.539165 TTGGTAGGTGGCCAAAGCA 59.461 52.632 7.24 9.61 42.39 3.91
4729 4941 0.105964 TTGGTAGGTGGCCAAAGCAA 60.106 50.000 19.23 19.23 42.39 3.91
4731 4943 1.266178 GGTAGGTGGCCAAAGCAATT 58.734 50.000 7.24 0.00 42.56 2.32
4732 4944 2.225142 TGGTAGGTGGCCAAAGCAATTA 60.225 45.455 7.24 0.00 42.56 1.40
4733 4945 2.427095 GGTAGGTGGCCAAAGCAATTAG 59.573 50.000 7.24 0.00 42.56 1.73
4734 4946 0.897621 AGGTGGCCAAAGCAATTAGC 59.102 50.000 7.24 0.00 42.56 3.09
4748 4960 5.212589 GCAATTAGCTGAATTTGGCTTTG 57.787 39.130 10.53 10.69 41.15 2.77
4749 4961 4.692155 GCAATTAGCTGAATTTGGCTTTGT 59.308 37.500 10.53 0.00 41.15 2.83
4750 4962 5.179929 GCAATTAGCTGAATTTGGCTTTGTT 59.820 36.000 10.53 3.15 41.15 2.83
4751 4963 6.293571 GCAATTAGCTGAATTTGGCTTTGTTT 60.294 34.615 10.53 0.39 41.15 2.83
4752 4964 7.641760 CAATTAGCTGAATTTGGCTTTGTTTT 58.358 30.769 10.53 0.00 35.45 2.43
4753 4965 6.601741 TTAGCTGAATTTGGCTTTGTTTTG 57.398 33.333 10.53 0.00 39.65 2.44
4754 4966 4.516323 AGCTGAATTTGGCTTTGTTTTGT 58.484 34.783 0.00 0.00 34.96 2.83
4755 4967 4.333372 AGCTGAATTTGGCTTTGTTTTGTG 59.667 37.500 0.00 0.00 34.96 3.33
4756 4968 4.590226 CTGAATTTGGCTTTGTTTTGTGC 58.410 39.130 0.00 0.00 0.00 4.57
4757 4969 3.376546 TGAATTTGGCTTTGTTTTGTGCC 59.623 39.130 0.00 0.00 45.10 5.01
4759 4971 3.318875 GGCTTTGTTTTGTGCCGC 58.681 55.556 0.00 0.00 35.79 6.53
4760 4972 1.520342 GGCTTTGTTTTGTGCCGCA 60.520 52.632 0.00 0.00 35.79 5.69
4761 4973 1.635810 GCTTTGTTTTGTGCCGCAC 59.364 52.632 16.93 16.93 34.56 5.34
4762 4974 0.805711 GCTTTGTTTTGTGCCGCACT 60.806 50.000 23.52 0.00 35.11 4.40
4763 4975 1.639280 CTTTGTTTTGTGCCGCACTT 58.361 45.000 23.52 0.00 35.11 3.16
4764 4976 1.324134 CTTTGTTTTGTGCCGCACTTG 59.676 47.619 23.52 2.50 35.11 3.16
4765 4977 0.528017 TTGTTTTGTGCCGCACTTGA 59.472 45.000 23.52 7.76 35.11 3.02
4766 4978 0.179150 TGTTTTGTGCCGCACTTGAC 60.179 50.000 23.52 17.60 35.11 3.18
4767 4979 0.100503 GTTTTGTGCCGCACTTGACT 59.899 50.000 23.52 0.00 35.11 3.41
4788 5000 7.768240 TGACTGACGCTGAAGATTAAATACTA 58.232 34.615 0.00 0.00 0.00 1.82
4789 5001 7.701078 TGACTGACGCTGAAGATTAAATACTAC 59.299 37.037 0.00 0.00 0.00 2.73
4790 5002 7.773149 ACTGACGCTGAAGATTAAATACTACT 58.227 34.615 0.00 0.00 0.00 2.57
4791 5003 8.900781 ACTGACGCTGAAGATTAAATACTACTA 58.099 33.333 0.00 0.00 0.00 1.82
4823 5035 1.476891 GCTGACTGTATCTGGGACGAA 59.523 52.381 0.00 0.00 0.00 3.85
4826 5038 3.096852 TGACTGTATCTGGGACGAATGT 58.903 45.455 0.00 0.00 0.00 2.71
4844 5056 5.458041 AATGTGACCTGAAAAACTGGATG 57.542 39.130 0.00 0.00 40.23 3.51
4945 5158 2.472695 TTAGCTTGCATCACCGTCTT 57.527 45.000 0.00 0.00 0.00 3.01
4946 5159 2.010145 TAGCTTGCATCACCGTCTTC 57.990 50.000 0.00 0.00 0.00 2.87
4947 5160 1.016130 AGCTTGCATCACCGTCTTCG 61.016 55.000 0.00 0.00 0.00 3.79
4948 5161 1.014044 GCTTGCATCACCGTCTTCGA 61.014 55.000 0.00 0.00 39.71 3.71
4949 5162 1.428448 CTTGCATCACCGTCTTCGAA 58.572 50.000 0.00 0.00 39.71 3.71
4950 5163 1.798223 CTTGCATCACCGTCTTCGAAA 59.202 47.619 0.00 0.00 39.71 3.46
4951 5164 1.428448 TGCATCACCGTCTTCGAAAG 58.572 50.000 0.00 0.00 39.71 2.62
4952 5165 1.270094 TGCATCACCGTCTTCGAAAGT 60.270 47.619 0.00 0.00 39.71 2.66
4968 5189 5.871834 TCGAAAGTTTGATTTTCCTAGGGA 58.128 37.500 9.46 0.00 32.26 4.20
4983 5204 1.826385 AGGGAAAAAGTCGGCATCAG 58.174 50.000 0.00 0.00 0.00 2.90
5029 5255 5.505286 CATCCTTTTCATCGTACATGCTTC 58.495 41.667 0.00 0.00 0.00 3.86
5069 5295 5.351458 GCAAGTAGCAATAATTTTGGGGAG 58.649 41.667 0.00 0.00 44.79 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.896801 CTGCGTCCAACTGTGCACC 61.897 63.158 15.69 0.00 33.12 5.01
21 22 3.357079 GCCCTGCGTCCAACTGTG 61.357 66.667 0.00 0.00 0.00 3.66
91 92 1.461897 GTTTTGCGGCACATAGTACGT 59.538 47.619 0.05 0.00 0.00 3.57
92 93 1.201987 GGTTTTGCGGCACATAGTACG 60.202 52.381 0.05 0.00 0.00 3.67
93 94 1.807742 TGGTTTTGCGGCACATAGTAC 59.192 47.619 0.05 0.00 0.00 2.73
131 137 2.277591 TAGTGTACCGCGGCAACCT 61.278 57.895 28.58 22.19 0.00 3.50
139 145 1.135460 GGTGTCTCTGTAGTGTACCGC 60.135 57.143 0.00 0.00 0.00 5.68
141 147 4.038883 ACAAAGGTGTCTCTGTAGTGTACC 59.961 45.833 0.00 0.00 29.49 3.34
165 171 1.442857 CGAGAGCGTGTGAGGTGTC 60.443 63.158 0.00 0.00 0.00 3.67
223 229 0.241213 GAGGGGACAAGCGAAAAAGC 59.759 55.000 0.00 0.00 37.41 3.51
228 234 0.601841 GAAACGAGGGGACAAGCGAA 60.602 55.000 0.00 0.00 0.00 4.70
229 235 1.005394 GAAACGAGGGGACAAGCGA 60.005 57.895 0.00 0.00 0.00 4.93
230 236 2.033194 GGAAACGAGGGGACAAGCG 61.033 63.158 0.00 0.00 0.00 4.68
231 237 0.673956 GAGGAAACGAGGGGACAAGC 60.674 60.000 0.00 0.00 0.00 4.01
232 238 0.389948 CGAGGAAACGAGGGGACAAG 60.390 60.000 0.00 0.00 35.09 3.16
262 268 1.663702 CGTCACGCCTTCTTTCCGT 60.664 57.895 0.00 0.00 35.29 4.69
288 294 4.124351 GTCCGTCCATGGCGTCGA 62.124 66.667 21.61 12.98 0.00 4.20
303 309 4.511443 GATGTGCTGCGCTGCGTC 62.511 66.667 30.11 24.95 35.36 5.19
341 351 1.035139 CCTGCTGCTCCTTGTGTTTT 58.965 50.000 0.00 0.00 0.00 2.43
343 353 0.250640 CTCCTGCTGCTCCTTGTGTT 60.251 55.000 0.00 0.00 0.00 3.32
345 355 2.039405 GCTCCTGCTGCTCCTTGTG 61.039 63.158 0.00 0.00 36.03 3.33
429 453 2.516460 ATCCTCGTCCTAGCGCGT 60.516 61.111 8.43 0.00 0.00 6.01
430 454 2.252855 GATCCTCGTCCTAGCGCG 59.747 66.667 0.00 0.00 0.00 6.86
431 455 2.252855 CGATCCTCGTCCTAGCGC 59.747 66.667 0.00 0.00 34.72 5.92
432 456 2.252855 GCGATCCTCGTCCTAGCG 59.747 66.667 0.00 0.00 42.81 4.26
433 457 2.646143 GGCGATCCTCGTCCTAGC 59.354 66.667 0.00 0.00 42.81 3.42
438 462 1.079405 TGTTTGGGCGATCCTCGTC 60.079 57.895 0.00 0.00 44.91 4.20
439 463 1.375523 GTGTTTGGGCGATCCTCGT 60.376 57.895 0.00 0.00 42.81 4.18
440 464 1.361668 CTGTGTTTGGGCGATCCTCG 61.362 60.000 0.00 0.00 43.89 4.63
441 465 1.648467 GCTGTGTTTGGGCGATCCTC 61.648 60.000 0.00 0.00 36.20 3.71
442 466 1.675641 GCTGTGTTTGGGCGATCCT 60.676 57.895 0.00 0.00 36.20 3.24
443 467 1.244019 AAGCTGTGTTTGGGCGATCC 61.244 55.000 0.00 0.00 0.00 3.36
444 468 0.169009 GAAGCTGTGTTTGGGCGATC 59.831 55.000 0.00 0.00 0.00 3.69
445 469 0.537143 TGAAGCTGTGTTTGGGCGAT 60.537 50.000 0.00 0.00 0.00 4.58
446 470 0.537143 ATGAAGCTGTGTTTGGGCGA 60.537 50.000 0.00 0.00 0.00 5.54
447 471 0.314935 AATGAAGCTGTGTTTGGGCG 59.685 50.000 0.00 0.00 0.00 6.13
448 472 2.407090 GAAATGAAGCTGTGTTTGGGC 58.593 47.619 0.00 0.00 0.00 5.36
449 473 2.364970 TGGAAATGAAGCTGTGTTTGGG 59.635 45.455 0.00 0.00 0.00 4.12
450 474 3.645884 CTGGAAATGAAGCTGTGTTTGG 58.354 45.455 0.00 0.00 0.00 3.28
451 475 3.054878 GCTGGAAATGAAGCTGTGTTTG 58.945 45.455 0.00 0.00 36.47 2.93
452 476 2.036346 GGCTGGAAATGAAGCTGTGTTT 59.964 45.455 0.00 0.00 39.46 2.83
453 477 1.615392 GGCTGGAAATGAAGCTGTGTT 59.385 47.619 0.00 0.00 39.46 3.32
454 478 1.251251 GGCTGGAAATGAAGCTGTGT 58.749 50.000 0.00 0.00 39.46 3.72
455 479 0.169672 CGGCTGGAAATGAAGCTGTG 59.830 55.000 0.00 0.00 40.30 3.66
456 480 0.962356 CCGGCTGGAAATGAAGCTGT 60.962 55.000 5.28 0.00 43.06 4.40
457 481 0.677731 TCCGGCTGGAAATGAAGCTG 60.678 55.000 13.31 0.00 42.85 4.24
458 482 1.685224 TCCGGCTGGAAATGAAGCT 59.315 52.632 13.31 0.00 42.85 3.74
459 483 4.319133 TCCGGCTGGAAATGAAGC 57.681 55.556 13.31 0.00 42.85 3.86
467 491 2.680352 GAGTGAGGTCCGGCTGGA 60.680 66.667 11.27 11.27 43.88 3.86
468 492 2.303549 GATGAGTGAGGTCCGGCTGG 62.304 65.000 4.71 4.71 0.00 4.85
469 493 1.142748 GATGAGTGAGGTCCGGCTG 59.857 63.158 0.00 0.00 0.00 4.85
470 494 0.689080 ATGATGAGTGAGGTCCGGCT 60.689 55.000 0.00 0.00 0.00 5.52
471 495 1.040646 TATGATGAGTGAGGTCCGGC 58.959 55.000 0.00 0.00 0.00 6.13
472 496 1.001268 CGTATGATGAGTGAGGTCCGG 60.001 57.143 0.00 0.00 0.00 5.14
473 497 1.676529 ACGTATGATGAGTGAGGTCCG 59.323 52.381 0.00 0.00 0.00 4.79
474 498 2.688446 TCACGTATGATGAGTGAGGTCC 59.312 50.000 0.00 0.00 39.63 4.46
475 499 3.128764 TGTCACGTATGATGAGTGAGGTC 59.871 47.826 5.31 0.00 44.32 3.85
476 500 3.089284 TGTCACGTATGATGAGTGAGGT 58.911 45.455 5.31 0.00 44.32 3.85
477 501 3.129462 AGTGTCACGTATGATGAGTGAGG 59.871 47.826 5.31 0.00 44.32 3.86
478 502 4.362932 AGTGTCACGTATGATGAGTGAG 57.637 45.455 5.31 0.00 44.32 3.51
479 503 4.201920 GCTAGTGTCACGTATGATGAGTGA 60.202 45.833 0.00 1.61 41.90 3.41
480 504 4.038361 GCTAGTGTCACGTATGATGAGTG 58.962 47.826 0.00 0.00 37.14 3.51
481 505 3.066900 GGCTAGTGTCACGTATGATGAGT 59.933 47.826 0.00 0.00 37.14 3.41
482 506 3.551046 GGGCTAGTGTCACGTATGATGAG 60.551 52.174 0.00 0.00 37.14 2.90
483 507 2.361119 GGGCTAGTGTCACGTATGATGA 59.639 50.000 0.00 0.00 37.14 2.92
484 508 2.743938 GGGCTAGTGTCACGTATGATG 58.256 52.381 0.00 0.00 37.14 3.07
485 509 1.337071 CGGGCTAGTGTCACGTATGAT 59.663 52.381 0.00 0.00 37.14 2.45
486 510 0.736636 CGGGCTAGTGTCACGTATGA 59.263 55.000 0.00 0.00 0.00 2.15
487 511 0.454600 ACGGGCTAGTGTCACGTATG 59.545 55.000 0.00 0.00 35.85 2.39
488 512 1.133790 GAACGGGCTAGTGTCACGTAT 59.866 52.381 0.00 0.00 36.69 3.06
489 513 0.523072 GAACGGGCTAGTGTCACGTA 59.477 55.000 0.00 0.00 36.69 3.57
512 536 0.752376 TTTGTGGTTGGGGTCCGTTC 60.752 55.000 0.00 0.00 0.00 3.95
513 537 1.038681 GTTTGTGGTTGGGGTCCGTT 61.039 55.000 0.00 0.00 0.00 4.44
514 538 1.454295 GTTTGTGGTTGGGGTCCGT 60.454 57.895 0.00 0.00 0.00 4.69
525 550 6.147164 CCTACAATGTACAGTACAGTTTGTGG 59.853 42.308 28.15 25.95 40.28 4.17
543 568 1.338136 CGAGGACCCAGCCCTACAAT 61.338 60.000 0.00 0.00 33.36 2.71
552 582 1.379977 TAGTGCCTCGAGGACCCAG 60.380 63.158 35.69 7.76 37.39 4.45
563 593 4.959210 AGTGAGTGATGATAACTAGTGCCT 59.041 41.667 0.00 0.00 0.00 4.75
564 594 5.269505 AGTGAGTGATGATAACTAGTGCC 57.730 43.478 0.00 0.00 0.00 5.01
566 596 5.297029 TCCGAGTGAGTGATGATAACTAGTG 59.703 44.000 0.00 0.00 0.00 2.74
567 597 5.297278 GTCCGAGTGAGTGATGATAACTAGT 59.703 44.000 0.00 0.00 0.00 2.57
569 599 4.272748 CGTCCGAGTGAGTGATGATAACTA 59.727 45.833 0.00 0.00 0.00 2.24
572 606 2.223502 GCGTCCGAGTGAGTGATGATAA 60.224 50.000 0.00 0.00 0.00 1.75
580 614 1.962822 TACGTGCGTCCGAGTGAGT 60.963 57.895 0.00 0.00 0.00 3.41
591 625 1.866496 GGCAGAGTACGTACGTGCG 60.866 63.158 31.94 24.57 40.04 5.34
597 631 0.518636 GTGACACGGCAGAGTACGTA 59.481 55.000 0.00 0.00 42.04 3.57
598 632 1.285023 GTGACACGGCAGAGTACGT 59.715 57.895 0.00 0.00 45.25 3.57
599 633 0.318360 TTGTGACACGGCAGAGTACG 60.318 55.000 0.22 0.00 0.00 3.67
600 634 1.137513 GTTGTGACACGGCAGAGTAC 58.862 55.000 0.22 0.00 0.00 2.73
641 675 6.071334 AGCAGTATGTTCATGTGTGTAGTACT 60.071 38.462 0.00 0.00 39.31 2.73
643 677 6.280855 AGCAGTATGTTCATGTGTGTAGTA 57.719 37.500 0.00 0.00 39.31 1.82
644 678 5.152623 AGCAGTATGTTCATGTGTGTAGT 57.847 39.130 0.00 0.00 39.31 2.73
645 679 5.520288 GGTAGCAGTATGTTCATGTGTGTAG 59.480 44.000 0.00 0.00 39.31 2.74
675 709 3.744987 GTGAGTGCACGTACTACTACTG 58.255 50.000 12.01 0.00 34.94 2.74
706 749 1.271379 TCTCTCTTTCGCGCCAAAGTA 59.729 47.619 23.79 14.03 35.25 2.24
720 768 0.033601 ATCACCGTGCCTCTCTCTCT 60.034 55.000 0.00 0.00 0.00 3.10
721 769 0.102120 CATCACCGTGCCTCTCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
742 793 2.553466 CCCCGGGTAAACAATCAGTTGA 60.553 50.000 21.85 0.00 41.19 3.18
771 834 4.918201 CGAAGCGGCTGGATCCCC 62.918 72.222 9.90 2.76 0.00 4.81
1146 1242 2.428085 GGCCTCGAAGTCCTCCTCC 61.428 68.421 0.00 0.00 0.00 4.30
1208 1304 3.787394 GTGGAACCTCCTCGACCA 58.213 61.111 0.00 0.00 37.46 4.02
1312 1408 1.615392 AGGAAGGCAAGTTGAATGTGC 59.385 47.619 7.16 0.00 37.55 4.57
1422 1522 1.734465 GATTCGTTGGGCAGAGACTTG 59.266 52.381 0.00 0.00 0.00 3.16
1427 1527 0.108615 AGTCGATTCGTTGGGCAGAG 60.109 55.000 5.89 0.00 0.00 3.35
1463 1563 9.924010 ACACCAAAGATTAGATCTAGTACTACT 57.076 33.333 2.02 0.00 39.08 2.57
1464 1564 9.953697 CACACCAAAGATTAGATCTAGTACTAC 57.046 37.037 2.02 0.00 39.08 2.73
1465 1565 9.916360 TCACACCAAAGATTAGATCTAGTACTA 57.084 33.333 2.02 1.89 39.08 1.82
1466 1566 8.824756 TCACACCAAAGATTAGATCTAGTACT 57.175 34.615 0.00 0.00 39.08 2.73
1476 1576 3.721087 ACCCCTCACACCAAAGATTAG 57.279 47.619 0.00 0.00 0.00 1.73
1488 1588 4.698780 AGTTAAGCGAAATTTACCCCTCAC 59.301 41.667 0.00 0.00 0.00 3.51
1545 1665 3.339713 AAATCCCCACGGACTAGGATA 57.660 47.619 0.00 0.00 42.48 2.59
1553 1673 1.279846 GTCTACCAAAATCCCCACGGA 59.720 52.381 0.00 0.00 44.33 4.69
1555 1675 2.483014 TGTCTACCAAAATCCCCACG 57.517 50.000 0.00 0.00 0.00 4.94
1613 1734 7.497579 AGGGTTTCTCGCAAAAATAAAACAATT 59.502 29.630 0.00 0.00 0.00 2.32
1615 1736 6.342111 AGGGTTTCTCGCAAAAATAAAACAA 58.658 32.000 0.00 0.00 0.00 2.83
1622 1743 6.521162 ACAATTTAGGGTTTCTCGCAAAAAT 58.479 32.000 0.00 0.00 32.58 1.82
1662 1792 1.070134 TCGAAGCTCATTAATCCCCCG 59.930 52.381 0.00 0.00 0.00 5.73
1721 1851 3.562176 CCCCATGATTAGTTATGGAGCCC 60.562 52.174 10.26 0.00 45.32 5.19
1723 1853 4.373156 ACCCCATGATTAGTTATGGAGC 57.627 45.455 10.26 0.00 45.32 4.70
1871 2031 5.766222 GATGGCAATACATCAATCAGAACC 58.234 41.667 0.00 0.00 45.11 3.62
1905 2065 6.101881 AGACAAATATTTAGGAAGGGAGGGAG 59.898 42.308 0.00 0.00 0.00 4.30
1906 2066 5.976870 AGACAAATATTTAGGAAGGGAGGGA 59.023 40.000 0.00 0.00 0.00 4.20
1907 2067 6.267492 AGACAAATATTTAGGAAGGGAGGG 57.733 41.667 0.00 0.00 0.00 4.30
1908 2068 8.055790 AGAAAGACAAATATTTAGGAAGGGAGG 58.944 37.037 0.00 0.00 0.00 4.30
1935 2095 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
1936 2096 8.592998 CCGTATGTAGTCACTTGTTAAAATCTC 58.407 37.037 0.00 0.00 0.00 2.75
1937 2097 8.308931 TCCGTATGTAGTCACTTGTTAAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
1938 2098 8.470040 TCCGTATGTAGTCACTTGTTAAAATC 57.530 34.615 0.00 0.00 0.00 2.17
1939 2099 7.064253 GCTCCGTATGTAGTCACTTGTTAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
1940 2100 6.366877 GCTCCGTATGTAGTCACTTGTTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
1941 2101 5.865552 GCTCCGTATGTAGTCACTTGTTAAA 59.134 40.000 0.00 0.00 0.00 1.52
1942 2102 5.047872 TGCTCCGTATGTAGTCACTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
1943 2103 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
1944 2104 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
1945 2105 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
1946 2106 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
1947 2107 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1948 2108 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1949 2109 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
1950 2110 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
1951 2111 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1952 2112 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1953 2113 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1954 2114 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1955 2115 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1956 2116 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1957 2117 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1958 2118 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1959 2119 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1960 2120 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1961 2121 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1962 2122 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1973 2133 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
1988 2148 9.778741 ACATTCGGATGTATATAGACATGTTTT 57.221 29.630 17.40 0.00 44.51 2.43
1989 2149 9.208022 CACATTCGGATGTATATAGACATGTTT 57.792 33.333 17.40 0.00 44.55 2.83
1990 2150 7.819415 CCACATTCGGATGTATATAGACATGTT 59.181 37.037 17.40 0.00 44.55 2.71
1991 2151 7.039011 ACCACATTCGGATGTATATAGACATGT 60.039 37.037 17.40 6.99 44.55 3.21
1992 2152 7.323420 ACCACATTCGGATGTATATAGACATG 58.677 38.462 17.40 6.38 44.55 3.21
1993 2153 7.482169 ACCACATTCGGATGTATATAGACAT 57.518 36.000 12.70 12.70 44.55 3.06
1994 2154 6.911250 ACCACATTCGGATGTATATAGACA 57.089 37.500 9.54 2.07 44.55 3.41
1995 2155 8.053026 ACTACCACATTCGGATGTATATAGAC 57.947 38.462 20.24 0.00 44.55 2.59
1996 2156 7.338703 GGACTACCACATTCGGATGTATATAGA 59.661 40.741 20.24 2.13 44.55 1.98
1997 2157 7.122204 TGGACTACCACATTCGGATGTATATAG 59.878 40.741 9.54 13.12 44.55 1.31
1998 2158 6.949463 TGGACTACCACATTCGGATGTATATA 59.051 38.462 9.54 1.59 44.55 0.86
1999 2159 5.778241 TGGACTACCACATTCGGATGTATAT 59.222 40.000 9.54 0.35 44.55 0.86
2000 2160 5.141910 TGGACTACCACATTCGGATGTATA 58.858 41.667 9.54 4.49 44.55 1.47
2001 2161 3.964688 TGGACTACCACATTCGGATGTAT 59.035 43.478 9.54 3.42 44.55 2.29
2002 2162 3.367321 TGGACTACCACATTCGGATGTA 58.633 45.455 9.54 0.00 44.55 2.29
2004 2164 2.979814 TGGACTACCACATTCGGATG 57.020 50.000 0.88 0.88 41.77 3.51
2015 2175 9.449719 TCTTTTAGAGATTTCAAATGGACTACC 57.550 33.333 0.00 0.00 0.00 3.18
2018 2178 8.924511 TGTCTTTTAGAGATTTCAAATGGACT 57.075 30.769 0.00 0.00 36.61 3.85
2019 2179 9.965824 TTTGTCTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 36.61 4.02
2033 2193 9.947433 TCCGTTCCTAAATATTTGTCTTTTAGA 57.053 29.630 11.05 0.00 35.79 2.10
2035 2195 9.169592 CCTCCGTTCCTAAATATTTGTCTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
2036 2196 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2037 2197 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2038 2198 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2039 2199 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2040 2200 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2041 2201 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2042 2202 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2043 2203 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2044 2204 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
2045 2205 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2046 2206 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2047 2207 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2048 2208 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2049 2209 3.053095 ACATCTACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
2050 2210 2.512896 ACATCTACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
2051 2211 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
2052 2212 1.777941 ACATCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
2053 2213 4.796618 GCATAACATCTACTCCCTCCGTTC 60.797 50.000 0.00 0.00 0.00 3.95
2054 2214 3.069729 GCATAACATCTACTCCCTCCGTT 59.930 47.826 0.00 0.00 0.00 4.44
2055 2215 2.628657 GCATAACATCTACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
2056 2216 2.028930 GGCATAACATCTACTCCCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
2057 2217 2.303311 GGGCATAACATCTACTCCCTCC 59.697 54.545 0.00 0.00 0.00 4.30
2058 2218 3.243724 AGGGCATAACATCTACTCCCTC 58.756 50.000 0.00 0.00 38.13 4.30
2059 2219 3.352611 AGGGCATAACATCTACTCCCT 57.647 47.619 0.00 0.00 37.77 4.20
2060 2220 5.491982 CAATAGGGCATAACATCTACTCCC 58.508 45.833 0.00 0.00 0.00 4.30
2061 2221 4.938226 GCAATAGGGCATAACATCTACTCC 59.062 45.833 0.00 0.00 0.00 3.85
2062 2222 4.938226 GGCAATAGGGCATAACATCTACTC 59.062 45.833 0.00 0.00 42.77 2.59
2063 2223 4.263506 GGGCAATAGGGCATAACATCTACT 60.264 45.833 0.00 0.00 45.66 2.57
2064 2224 4.010349 GGGCAATAGGGCATAACATCTAC 58.990 47.826 0.00 0.00 45.66 2.59
2065 2225 3.916349 AGGGCAATAGGGCATAACATCTA 59.084 43.478 0.00 0.00 45.66 1.98
2066 2226 2.718609 AGGGCAATAGGGCATAACATCT 59.281 45.455 0.00 0.00 45.66 2.90
2067 2227 3.160679 AGGGCAATAGGGCATAACATC 57.839 47.619 0.00 0.00 45.66 3.06
2068 2228 3.140895 AGAAGGGCAATAGGGCATAACAT 59.859 43.478 0.00 0.00 45.66 2.71
2069 2229 2.513738 AGAAGGGCAATAGGGCATAACA 59.486 45.455 0.00 0.00 45.66 2.41
2070 2230 3.229697 AGAAGGGCAATAGGGCATAAC 57.770 47.619 0.00 0.00 45.66 1.89
2071 2231 3.330701 CCTAGAAGGGCAATAGGGCATAA 59.669 47.826 0.00 0.00 45.66 1.90
2072 2232 2.912956 CCTAGAAGGGCAATAGGGCATA 59.087 50.000 0.00 0.00 45.66 3.14
2073 2233 1.707427 CCTAGAAGGGCAATAGGGCAT 59.293 52.381 0.00 0.00 45.66 4.40
2074 2234 1.140312 CCTAGAAGGGCAATAGGGCA 58.860 55.000 0.00 0.00 45.66 5.36
2139 2302 9.143631 GGTCACAAGATTCTTTTATTTCAATGG 57.856 33.333 0.00 0.00 0.00 3.16
2143 2306 8.690203 TGAGGTCACAAGATTCTTTTATTTCA 57.310 30.769 0.00 0.00 0.00 2.69
2599 2762 9.880157 ACGGTTAGCAAAAGAAAAGATATAGTA 57.120 29.630 0.00 0.00 0.00 1.82
2602 2765 9.880157 ACTACGGTTAGCAAAAGAAAAGATATA 57.120 29.630 0.00 0.00 0.00 0.86
2604 2767 8.611654 AACTACGGTTAGCAAAAGAAAAGATA 57.388 30.769 0.00 0.00 33.39 1.98
2606 2769 6.017687 GGAACTACGGTTAGCAAAAGAAAAGA 60.018 38.462 0.00 0.00 35.58 2.52
2607 2770 6.017357 AGGAACTACGGTTAGCAAAAGAAAAG 60.017 38.462 0.00 0.00 36.02 2.27
2609 2772 5.370679 AGGAACTACGGTTAGCAAAAGAAA 58.629 37.500 0.00 0.00 36.02 2.52
2610 2773 4.964593 AGGAACTACGGTTAGCAAAAGAA 58.035 39.130 0.00 0.00 36.02 2.52
2636 2801 9.762381 ATTGGGTTTATAGAACTAATTGGTTGA 57.238 29.630 12.36 0.23 0.00 3.18
2658 2823 7.630242 ATGTTACTAGGAACAACATCATTGG 57.370 36.000 24.11 0.00 42.39 3.16
2686 2851 9.865321 GGCGGACATATATAAGTAATAACAGAA 57.135 33.333 0.00 0.00 0.00 3.02
2694 2859 6.812998 GCCTATGGCGGACATATATAAGTAA 58.187 40.000 3.56 0.00 41.07 2.24
2695 2860 6.401047 GCCTATGGCGGACATATATAAGTA 57.599 41.667 3.56 0.00 41.07 2.24
2696 2861 5.277857 GCCTATGGCGGACATATATAAGT 57.722 43.478 3.56 0.00 41.07 2.24
2723 2888 6.098982 ACAAACATCAATTAACCTTGGGAACA 59.901 34.615 0.00 0.00 39.83 3.18
2837 3010 7.947282 ACAATATTAACCGGTAATGAAATGGG 58.053 34.615 8.00 0.00 34.18 4.00
2840 3013 8.754991 TGGACAATATTAACCGGTAATGAAAT 57.245 30.769 8.00 5.93 34.18 2.17
2890 3073 3.118847 TGCTTTCCAGTTGCACAATTCAA 60.119 39.130 0.00 0.00 0.00 2.69
2893 3076 3.756933 ATGCTTTCCAGTTGCACAATT 57.243 38.095 0.00 0.00 39.63 2.32
2927 3110 2.290260 TGGTGAACAGCTAACCATCCAG 60.290 50.000 5.82 0.00 39.05 3.86
2928 3111 1.702401 TGGTGAACAGCTAACCATCCA 59.298 47.619 5.82 0.00 39.05 3.41
2929 3112 2.489938 TGGTGAACAGCTAACCATCC 57.510 50.000 5.82 0.00 39.05 3.51
2930 3113 4.218417 ACAATTGGTGAACAGCTAACCATC 59.782 41.667 10.83 0.00 43.32 3.51
2932 3115 3.561143 ACAATTGGTGAACAGCTAACCA 58.439 40.909 10.83 5.82 42.19 3.67
2933 3116 3.568007 TGACAATTGGTGAACAGCTAACC 59.432 43.478 10.83 0.00 34.38 2.85
2934 3117 4.829064 TGACAATTGGTGAACAGCTAAC 57.171 40.909 10.83 0.00 0.00 2.34
2935 3118 5.181811 CAGATGACAATTGGTGAACAGCTAA 59.818 40.000 10.83 0.00 34.27 3.09
2936 3119 4.696877 CAGATGACAATTGGTGAACAGCTA 59.303 41.667 10.83 0.00 34.27 3.32
2939 3122 5.702670 ACTACAGATGACAATTGGTGAACAG 59.297 40.000 10.83 0.17 0.00 3.16
2940 3123 5.620206 ACTACAGATGACAATTGGTGAACA 58.380 37.500 10.83 2.61 0.00 3.18
2941 3124 6.183360 CGTACTACAGATGACAATTGGTGAAC 60.183 42.308 10.83 0.00 0.00 3.18
2942 3125 5.867174 CGTACTACAGATGACAATTGGTGAA 59.133 40.000 10.83 0.00 0.00 3.18
2943 3126 5.047590 ACGTACTACAGATGACAATTGGTGA 60.048 40.000 10.83 0.00 0.00 4.02
2944 3127 5.062183 CACGTACTACAGATGACAATTGGTG 59.938 44.000 10.83 1.84 0.00 4.17
2945 3128 5.168569 CACGTACTACAGATGACAATTGGT 58.831 41.667 10.83 0.00 0.00 3.67
2946 3129 5.168569 ACACGTACTACAGATGACAATTGG 58.831 41.667 10.83 0.00 0.00 3.16
2947 3130 6.145534 ACAACACGTACTACAGATGACAATTG 59.854 38.462 3.24 3.24 0.00 2.32
2948 3131 6.220930 ACAACACGTACTACAGATGACAATT 58.779 36.000 0.00 0.00 0.00 2.32
2949 3132 5.779922 ACAACACGTACTACAGATGACAAT 58.220 37.500 0.00 0.00 0.00 2.71
2950 3133 5.190992 ACAACACGTACTACAGATGACAA 57.809 39.130 0.00 0.00 0.00 3.18
2951 3134 4.841443 ACAACACGTACTACAGATGACA 57.159 40.909 0.00 0.00 0.00 3.58
2952 3135 6.520792 AAAACAACACGTACTACAGATGAC 57.479 37.500 0.00 0.00 0.00 3.06
2953 3136 6.982141 AGAAAAACAACACGTACTACAGATGA 59.018 34.615 0.00 0.00 0.00 2.92
2954 3137 7.063456 CAGAAAAACAACACGTACTACAGATG 58.937 38.462 0.00 0.00 0.00 2.90
2955 3138 6.759827 ACAGAAAAACAACACGTACTACAGAT 59.240 34.615 0.00 0.00 0.00 2.90
2956 3139 6.035220 CACAGAAAAACAACACGTACTACAGA 59.965 38.462 0.00 0.00 0.00 3.41
2957 3140 6.182634 CACAGAAAAACAACACGTACTACAG 58.817 40.000 0.00 0.00 0.00 2.74
2958 3141 5.638657 ACACAGAAAAACAACACGTACTACA 59.361 36.000 0.00 0.00 0.00 2.74
2959 3142 5.955496 CACACAGAAAAACAACACGTACTAC 59.045 40.000 0.00 0.00 0.00 2.73
2960 3143 5.638657 ACACACAGAAAAACAACACGTACTA 59.361 36.000 0.00 0.00 0.00 1.82
2961 3144 4.453136 ACACACAGAAAAACAACACGTACT 59.547 37.500 0.00 0.00 0.00 2.73
2962 3145 4.714851 ACACACAGAAAAACAACACGTAC 58.285 39.130 0.00 0.00 0.00 3.67
2963 3146 6.665474 ATACACACAGAAAAACAACACGTA 57.335 33.333 0.00 0.00 0.00 3.57
2964 3147 3.907894 ACACACAGAAAAACAACACGT 57.092 38.095 0.00 0.00 0.00 4.49
2965 3148 7.348956 TCATATACACACAGAAAAACAACACG 58.651 34.615 0.00 0.00 0.00 4.49
2966 3149 8.556194 TCTCATATACACACAGAAAAACAACAC 58.444 33.333 0.00 0.00 0.00 3.32
2967 3150 8.556194 GTCTCATATACACACAGAAAAACAACA 58.444 33.333 0.00 0.00 0.00 3.33
2968 3151 8.556194 TGTCTCATATACACACAGAAAAACAAC 58.444 33.333 0.00 0.00 0.00 3.32
2969 3152 8.669946 TGTCTCATATACACACAGAAAAACAA 57.330 30.769 0.00 0.00 0.00 2.83
2970 3153 8.846943 ATGTCTCATATACACACAGAAAAACA 57.153 30.769 0.00 0.00 0.00 2.83
2973 3156 9.599866 CCTTATGTCTCATATACACACAGAAAA 57.400 33.333 0.00 0.00 0.00 2.29
2974 3157 8.204160 CCCTTATGTCTCATATACACACAGAAA 58.796 37.037 0.00 0.00 0.00 2.52
2975 3158 7.563556 TCCCTTATGTCTCATATACACACAGAA 59.436 37.037 0.00 0.00 0.00 3.02
2990 3173 7.865820 TGAATCTGAAATTCTCCCTTATGTCT 58.134 34.615 0.00 0.00 0.00 3.41
3017 3200 9.878667 TGCAAGAAATGAATTCATATGTTTGAT 57.121 25.926 21.00 0.25 40.72 2.57
3034 3217 8.677148 TCTTTTACTCTAGTTGTGCAAGAAAT 57.323 30.769 0.00 0.00 0.00 2.17
3036 3219 9.944376 ATATCTTTTACTCTAGTTGTGCAAGAA 57.056 29.630 0.00 0.00 0.00 2.52
3057 3240 8.589338 GTGATCACCCATACTAACAGAATATCT 58.411 37.037 15.31 0.00 0.00 1.98
3058 3241 8.589338 AGTGATCACCCATACTAACAGAATATC 58.411 37.037 22.21 0.00 0.00 1.63
3061 3244 6.814954 AGTGATCACCCATACTAACAGAAT 57.185 37.500 22.21 0.00 0.00 2.40
3063 3246 5.483937 ACAAGTGATCACCCATACTAACAGA 59.516 40.000 22.21 0.00 0.00 3.41
3147 3333 5.127031 GTGGTACAACAATCCCATTAGCAAT 59.873 40.000 0.00 0.00 44.16 3.56
3167 3353 4.724279 ACTTGAATAGGAAACTGGTGGT 57.276 40.909 0.00 0.00 43.88 4.16
3489 3675 0.037326 CGGCAGTTGGCTTCAGAGTA 60.037 55.000 4.12 0.00 44.01 2.59
3492 3678 1.826340 TAGCGGCAGTTGGCTTCAGA 61.826 55.000 1.45 0.00 44.01 3.27
3621 3807 2.359230 GCTGGCTTCGCAGGAACT 60.359 61.111 0.00 0.00 43.88 3.01
3630 3816 0.595095 CCACACTTTCAGCTGGCTTC 59.405 55.000 15.13 0.00 0.00 3.86
3720 3906 4.222810 TCAGTAGAGCCAAATGAGTTGCTA 59.777 41.667 0.00 0.00 35.74 3.49
3764 3950 1.317431 CGTGTAGTCCGGGGTCATGA 61.317 60.000 0.00 0.00 0.00 3.07
3795 3981 2.831742 ATGGCAGCAGCATTCGGG 60.832 61.111 2.65 0.00 44.61 5.14
3905 4091 0.111061 AGCAGGGATGTCTTGTGCAA 59.889 50.000 0.00 0.00 36.57 4.08
3960 4146 3.443925 CCGTCCGAGCTGCTCTCA 61.444 66.667 25.59 10.36 41.98 3.27
4092 4279 1.218047 GCTATCCGCAGACCACACA 59.782 57.895 0.00 0.00 38.92 3.72
4143 4340 3.948196 TTTGCACAAAGAAAAGCATGC 57.052 38.095 10.51 10.51 36.80 4.06
4156 4353 2.554344 GGTCCCTGGAGTATTTTGCACA 60.554 50.000 0.00 0.00 0.00 4.57
4157 4354 2.092323 GGTCCCTGGAGTATTTTGCAC 58.908 52.381 0.00 0.00 0.00 4.57
4158 4355 1.992557 AGGTCCCTGGAGTATTTTGCA 59.007 47.619 0.00 0.00 0.00 4.08
4159 4356 2.808906 AGGTCCCTGGAGTATTTTGC 57.191 50.000 0.00 0.00 0.00 3.68
4160 4357 5.067805 GCATTTAGGTCCCTGGAGTATTTTG 59.932 44.000 0.00 0.00 0.00 2.44
4161 4358 5.201243 GCATTTAGGTCCCTGGAGTATTTT 58.799 41.667 0.00 0.00 0.00 1.82
4162 4359 4.229582 TGCATTTAGGTCCCTGGAGTATTT 59.770 41.667 0.00 0.00 0.00 1.40
4163 4360 3.785887 TGCATTTAGGTCCCTGGAGTATT 59.214 43.478 0.00 0.00 0.00 1.89
4164 4361 3.392616 CTGCATTTAGGTCCCTGGAGTAT 59.607 47.826 0.00 0.00 0.00 2.12
4165 4362 2.771943 CTGCATTTAGGTCCCTGGAGTA 59.228 50.000 0.00 0.00 0.00 2.59
4166 4363 1.561542 CTGCATTTAGGTCCCTGGAGT 59.438 52.381 0.00 0.00 0.00 3.85
4167 4364 1.561542 ACTGCATTTAGGTCCCTGGAG 59.438 52.381 0.00 0.00 33.78 3.86
4168 4365 1.668826 ACTGCATTTAGGTCCCTGGA 58.331 50.000 0.00 0.00 0.00 3.86
4169 4366 3.744660 GATACTGCATTTAGGTCCCTGG 58.255 50.000 0.00 0.00 0.00 4.45
4170 4367 3.069586 TCGATACTGCATTTAGGTCCCTG 59.930 47.826 0.00 0.00 0.00 4.45
4171 4368 3.305720 TCGATACTGCATTTAGGTCCCT 58.694 45.455 0.00 0.00 0.00 4.20
4172 4369 3.069729 ACTCGATACTGCATTTAGGTCCC 59.930 47.826 0.00 0.00 0.00 4.46
4173 4370 4.323553 ACTCGATACTGCATTTAGGTCC 57.676 45.455 0.00 0.00 0.00 4.46
4174 4371 6.315091 TCTACTCGATACTGCATTTAGGTC 57.685 41.667 0.00 0.00 0.00 3.85
4175 4372 6.710597 TTCTACTCGATACTGCATTTAGGT 57.289 37.500 0.00 0.00 0.00 3.08
4176 4373 8.594881 ATTTTCTACTCGATACTGCATTTAGG 57.405 34.615 0.00 0.00 0.00 2.69
4179 4376 8.942338 TGTATTTTCTACTCGATACTGCATTT 57.058 30.769 0.00 0.00 0.00 2.32
4180 4377 8.818057 GTTGTATTTTCTACTCGATACTGCATT 58.182 33.333 0.00 0.00 0.00 3.56
4181 4378 8.198109 AGTTGTATTTTCTACTCGATACTGCAT 58.802 33.333 0.00 0.00 0.00 3.96
4182 4379 7.488150 CAGTTGTATTTTCTACTCGATACTGCA 59.512 37.037 0.00 0.00 0.00 4.41
4183 4380 7.488471 ACAGTTGTATTTTCTACTCGATACTGC 59.512 37.037 0.00 0.00 33.32 4.40
4184 4381 8.912787 ACAGTTGTATTTTCTACTCGATACTG 57.087 34.615 0.00 0.00 35.48 2.74
4185 4382 9.355215 CAACAGTTGTATTTTCTACTCGATACT 57.645 33.333 4.99 0.00 0.00 2.12
4186 4383 9.136952 ACAACAGTTGTATTTTCTACTCGATAC 57.863 33.333 17.74 0.00 43.27 2.24
4187 4384 9.701098 AACAACAGTTGTATTTTCTACTCGATA 57.299 29.630 19.45 0.00 44.59 2.92
4188 4385 8.603242 AACAACAGTTGTATTTTCTACTCGAT 57.397 30.769 19.45 0.00 44.59 3.59
4189 4386 7.924412 AGAACAACAGTTGTATTTTCTACTCGA 59.076 33.333 19.45 0.00 44.59 4.04
4190 4387 8.073355 AGAACAACAGTTGTATTTTCTACTCG 57.927 34.615 19.45 0.00 44.59 4.18
4275 4472 0.518636 CATGCACCACCAGTTCTTCG 59.481 55.000 0.00 0.00 0.00 3.79
4314 4512 4.024556 GCTACGAAACATAGCAGATGCAAT 60.025 41.667 7.68 0.00 43.81 3.56
4347 4545 6.684111 GCATACAGTCTTCAGCATAACTAGGT 60.684 42.308 0.00 0.00 0.00 3.08
4353 4551 3.873361 GCAGCATACAGTCTTCAGCATAA 59.127 43.478 0.00 0.00 0.00 1.90
4502 4702 5.525745 CACAACCATGTACTTACTCAACACA 59.474 40.000 0.00 0.00 37.82 3.72
4545 4749 3.067461 ACTCAGCAAAACGCCATTGTAAA 59.933 39.130 0.00 0.00 44.04 2.01
4585 4792 1.353103 GGATTTCAGATGCCGCACG 59.647 57.895 0.00 0.00 0.00 5.34
4638 4845 9.507329 AGCTGAGTTAAGACAGAATCATTTAAA 57.493 29.630 11.50 0.00 36.38 1.52
4726 4938 4.692155 ACAAAGCCAAATTCAGCTAATTGC 59.308 37.500 11.30 0.00 38.74 3.56
4727 4939 6.790285 AACAAAGCCAAATTCAGCTAATTG 57.210 33.333 2.85 7.34 38.74 2.32
4728 4940 7.282901 ACAAAACAAAGCCAAATTCAGCTAATT 59.717 29.630 2.85 0.00 38.74 1.40
4729 4941 6.767423 ACAAAACAAAGCCAAATTCAGCTAAT 59.233 30.769 2.85 0.00 38.74 1.73
4731 4943 5.523188 CACAAAACAAAGCCAAATTCAGCTA 59.477 36.000 2.85 0.00 38.74 3.32
4732 4944 4.333372 CACAAAACAAAGCCAAATTCAGCT 59.667 37.500 0.00 0.00 42.40 4.24
4733 4945 4.590226 CACAAAACAAAGCCAAATTCAGC 58.410 39.130 0.00 0.00 0.00 4.26
4734 4946 4.496175 GGCACAAAACAAAGCCAAATTCAG 60.496 41.667 0.00 0.00 46.26 3.02
4735 4947 3.376546 GGCACAAAACAAAGCCAAATTCA 59.623 39.130 0.00 0.00 46.26 2.57
4736 4948 3.951306 GGCACAAAACAAAGCCAAATTC 58.049 40.909 0.00 0.00 46.26 2.17
4742 4954 1.520342 TGCGGCACAAAACAAAGCC 60.520 52.632 0.00 0.00 43.61 4.35
4743 4955 0.805711 AGTGCGGCACAAAACAAAGC 60.806 50.000 32.29 3.85 36.74 3.51
4744 4956 1.324134 CAAGTGCGGCACAAAACAAAG 59.676 47.619 32.29 10.49 36.74 2.77
4745 4957 1.067565 TCAAGTGCGGCACAAAACAAA 60.068 42.857 32.29 9.59 36.74 2.83
4746 4958 0.528017 TCAAGTGCGGCACAAAACAA 59.472 45.000 32.29 10.60 36.74 2.83
4747 4959 0.179150 GTCAAGTGCGGCACAAAACA 60.179 50.000 32.29 10.53 36.74 2.83
4748 4960 0.100503 AGTCAAGTGCGGCACAAAAC 59.899 50.000 32.29 24.35 36.74 2.43
4749 4961 0.100325 CAGTCAAGTGCGGCACAAAA 59.900 50.000 32.29 15.37 36.74 2.44
4750 4962 0.746204 TCAGTCAAGTGCGGCACAAA 60.746 50.000 32.29 15.72 36.74 2.83
4751 4963 1.153269 TCAGTCAAGTGCGGCACAA 60.153 52.632 32.29 16.06 36.74 3.33
4752 4964 1.887242 GTCAGTCAAGTGCGGCACA 60.887 57.895 32.29 11.64 36.74 4.57
4753 4965 2.939022 GTCAGTCAAGTGCGGCAC 59.061 61.111 25.00 25.00 34.10 5.01
4754 4966 2.661537 CGTCAGTCAAGTGCGGCA 60.662 61.111 0.00 0.00 0.00 5.69
4755 4967 4.077188 GCGTCAGTCAAGTGCGGC 62.077 66.667 0.00 0.00 0.00 6.53
4756 4968 2.356313 AGCGTCAGTCAAGTGCGG 60.356 61.111 0.00 0.00 0.00 5.69
4757 4969 1.215014 TTCAGCGTCAGTCAAGTGCG 61.215 55.000 0.00 0.00 0.00 5.34
4758 4970 0.510359 CTTCAGCGTCAGTCAAGTGC 59.490 55.000 0.00 0.00 0.00 4.40
4759 4971 2.140065 TCTTCAGCGTCAGTCAAGTG 57.860 50.000 0.00 0.00 0.00 3.16
4760 4972 3.393089 AATCTTCAGCGTCAGTCAAGT 57.607 42.857 0.00 0.00 0.00 3.16
4761 4973 5.845985 TTTAATCTTCAGCGTCAGTCAAG 57.154 39.130 0.00 0.00 0.00 3.02
4762 4974 7.097192 AGTATTTAATCTTCAGCGTCAGTCAA 58.903 34.615 0.00 0.00 0.00 3.18
4763 4975 6.631016 AGTATTTAATCTTCAGCGTCAGTCA 58.369 36.000 0.00 0.00 0.00 3.41
4764 4976 7.916450 AGTAGTATTTAATCTTCAGCGTCAGTC 59.084 37.037 0.00 0.00 0.00 3.51
4765 4977 7.773149 AGTAGTATTTAATCTTCAGCGTCAGT 58.227 34.615 0.00 0.00 0.00 3.41
4766 4978 9.388346 CTAGTAGTATTTAATCTTCAGCGTCAG 57.612 37.037 0.00 0.00 0.00 3.51
4767 4979 8.900781 ACTAGTAGTATTTAATCTTCAGCGTCA 58.099 33.333 0.00 0.00 0.00 4.35
4788 5000 1.203523 GTCAGCTGCAGTGCTACTAGT 59.796 52.381 17.60 0.00 41.98 2.57
4789 5001 1.476085 AGTCAGCTGCAGTGCTACTAG 59.524 52.381 17.60 6.23 41.98 2.57
4790 5002 1.203287 CAGTCAGCTGCAGTGCTACTA 59.797 52.381 17.60 0.00 41.98 1.82
4791 5003 0.037512 CAGTCAGCTGCAGTGCTACT 60.038 55.000 17.60 10.62 41.98 2.57
4823 5035 4.473444 ACATCCAGTTTTTCAGGTCACAT 58.527 39.130 0.00 0.00 0.00 3.21
4826 5038 6.361433 TCTTTACATCCAGTTTTTCAGGTCA 58.639 36.000 0.00 0.00 0.00 4.02
4844 5056 3.684788 AGTGTGCAACCGATCATCTTTAC 59.315 43.478 0.00 0.00 34.36 2.01
4904 5116 3.126001 TGTTGGTTGAAGGAGTGCTAG 57.874 47.619 0.00 0.00 0.00 3.42
4909 5122 4.729868 AGCTAATTGTTGGTTGAAGGAGT 58.270 39.130 0.00 0.00 0.00 3.85
4945 5158 5.871834 TCCCTAGGAAAATCAAACTTTCGA 58.128 37.500 11.48 0.00 34.26 3.71
4946 5159 6.569179 TTCCCTAGGAAAATCAAACTTTCG 57.431 37.500 11.48 0.00 38.93 3.46
4968 5189 1.336240 GCAAGCTGATGCCGACTTTTT 60.336 47.619 0.00 0.00 40.49 1.94
4983 5204 5.107104 TGCGCTAACAGTTATATATGCAAGC 60.107 40.000 9.73 0.00 0.00 4.01
5029 5255 1.866496 GCAAAGAAGCTGCATCGCG 60.866 57.895 0.00 0.00 39.69 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.