Multiple sequence alignment - TraesCS5D01G222300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G222300 chr5D 100.000 2656 0 0 1 2656 329797630 329794975 0.000000e+00 4905.0
1 TraesCS5D01G222300 chr5D 93.689 206 10 3 118 322 486285016 486284813 3.320000e-79 305.0
2 TraesCS5D01G222300 chr5D 93.564 202 13 0 117 318 68239888 68239687 4.300000e-78 302.0
3 TraesCS5D01G222300 chr5B 91.683 2104 92 41 380 2433 382910579 382908509 0.000000e+00 2839.0
4 TraesCS5D01G222300 chr5A 89.735 1734 75 36 377 2069 426903327 426904998 0.000000e+00 2121.0
5 TraesCS5D01G222300 chr5A 88.983 354 23 7 2106 2447 426904999 426905348 8.790000e-115 424.0
6 TraesCS5D01G222300 chr5A 90.955 199 18 0 119 317 510186908 510187106 4.360000e-68 268.0
7 TraesCS5D01G222300 chr5A 96.330 109 4 0 1 109 151398050 151397942 2.100000e-41 180.0
8 TraesCS5D01G222300 chr5A 91.304 46 3 1 313 357 426903293 426903338 7.940000e-06 62.1
9 TraesCS5D01G222300 chr6B 93.204 206 13 1 117 322 347227348 347227144 4.300000e-78 302.0
10 TraesCS5D01G222300 chr6B 93.162 117 8 0 1 117 361581209 361581325 3.510000e-39 172.0
11 TraesCS5D01G222300 chr7D 93.532 201 13 0 117 317 208291376 208291176 1.550000e-77 300.0
12 TraesCS5D01G222300 chr7D 87.500 112 14 0 1000 1111 49381176 49381287 2.150000e-26 130.0
13 TraesCS5D01G222300 chr7B 92.056 214 15 2 117 330 490242251 490242040 1.550000e-77 300.0
14 TraesCS5D01G222300 chr3D 93.532 201 13 0 117 317 269465702 269465502 1.550000e-77 300.0
15 TraesCS5D01G222300 chr3D 93.532 201 13 0 117 317 284336559 284336759 1.550000e-77 300.0
16 TraesCS5D01G222300 chr3D 93.532 201 13 0 117 317 563449136 563448936 1.550000e-77 300.0
17 TraesCS5D01G222300 chr3D 94.017 117 7 0 1 117 329293420 329293536 7.550000e-41 178.0
18 TraesCS5D01G222300 chr2D 93.532 201 13 0 117 317 541547336 541547536 1.550000e-77 300.0
19 TraesCS5D01G222300 chrUn 89.100 211 22 1 117 326 90155978 90156188 7.290000e-66 261.0
20 TraesCS5D01G222300 chr4B 91.329 173 15 0 117 289 528349570 528349742 1.230000e-58 237.0
21 TraesCS5D01G222300 chr1D 86.207 203 20 5 132 333 139272453 139272648 2.070000e-51 213.0
22 TraesCS5D01G222300 chr7A 96.330 109 4 0 1 109 285083527 285083419 2.100000e-41 180.0
23 TraesCS5D01G222300 chr7A 88.496 113 13 0 1000 1112 52278900 52279012 1.280000e-28 137.0
24 TraesCS5D01G222300 chr1A 96.330 109 4 0 1 109 248370206 248370314 2.100000e-41 180.0
25 TraesCS5D01G222300 chr4A 94.017 117 7 0 1 117 567788034 567788150 7.550000e-41 178.0
26 TraesCS5D01G222300 chr4A 89.381 113 12 0 1000 1112 663986137 663986249 2.760000e-30 143.0
27 TraesCS5D01G222300 chr2A 94.017 117 7 0 1 117 652385046 652384930 7.550000e-41 178.0
28 TraesCS5D01G222300 chr6A 95.413 109 5 0 1 109 483259626 483259518 9.770000e-40 174.0
29 TraesCS5D01G222300 chr4D 92.437 119 7 1 1 117 273297679 273297561 4.550000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G222300 chr5D 329794975 329797630 2655 True 4905.000000 4905 100.000000 1 2656 1 chr5D.!!$R2 2655
1 TraesCS5D01G222300 chr5B 382908509 382910579 2070 True 2839.000000 2839 91.683000 380 2433 1 chr5B.!!$R1 2053
2 TraesCS5D01G222300 chr5A 426903293 426905348 2055 False 869.033333 2121 90.007333 313 2447 3 chr5A.!!$F2 2134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 657 0.036306 GGAGCCCGGAAACAGAAAGA 59.964 55.0 0.73 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 2227 0.035739 TTCAACTAGCCCGACCAACC 59.964 55.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.597227 TGAATGTAACTATTTGTATTCCGAACG 58.403 33.333 0.00 0.00 0.00 3.95
34 35 8.483307 AATGTAACTATTTGTATTCCGAACGT 57.517 30.769 0.00 0.00 0.00 3.99
35 36 9.585099 AATGTAACTATTTGTATTCCGAACGTA 57.415 29.630 0.00 0.00 0.00 3.57
36 37 8.978564 TGTAACTATTTGTATTCCGAACGTAA 57.021 30.769 0.00 0.00 0.00 3.18
37 38 9.585099 TGTAACTATTTGTATTCCGAACGTAAT 57.415 29.630 0.00 0.00 0.00 1.89
40 41 9.763465 AACTATTTGTATTCCGAACGTAATTTG 57.237 29.630 0.00 0.00 0.00 2.32
41 42 8.938906 ACTATTTGTATTCCGAACGTAATTTGT 58.061 29.630 0.00 0.00 0.00 2.83
42 43 9.763465 CTATTTGTATTCCGAACGTAATTTGTT 57.237 29.630 0.00 0.00 0.00 2.83
46 47 9.544314 TTGTATTCCGAACGTAATTTGTTTATG 57.456 29.630 0.00 0.00 33.70 1.90
47 48 8.933807 TGTATTCCGAACGTAATTTGTTTATGA 58.066 29.630 0.00 0.00 32.17 2.15
48 49 9.757859 GTATTCCGAACGTAATTTGTTTATGAA 57.242 29.630 0.00 0.00 32.17 2.57
49 50 8.889849 ATTCCGAACGTAATTTGTTTATGAAG 57.110 30.769 0.00 0.00 32.17 3.02
50 51 6.308675 TCCGAACGTAATTTGTTTATGAAGC 58.691 36.000 0.00 0.00 32.17 3.86
51 52 5.224313 CCGAACGTAATTTGTTTATGAAGCG 59.776 40.000 0.00 0.00 32.17 4.68
52 53 6.010675 CGAACGTAATTTGTTTATGAAGCGA 58.989 36.000 0.00 0.00 32.17 4.93
53 54 6.023564 CGAACGTAATTTGTTTATGAAGCGAC 60.024 38.462 0.00 0.00 32.17 5.19
54 55 5.624292 ACGTAATTTGTTTATGAAGCGACC 58.376 37.500 0.00 0.00 32.17 4.79
55 56 4.721977 CGTAATTTGTTTATGAAGCGACCG 59.278 41.667 0.00 0.00 0.00 4.79
56 57 4.759516 AATTTGTTTATGAAGCGACCGT 57.240 36.364 0.00 0.00 0.00 4.83
57 58 5.866335 AATTTGTTTATGAAGCGACCGTA 57.134 34.783 0.00 0.00 0.00 4.02
58 59 5.866335 ATTTGTTTATGAAGCGACCGTAA 57.134 34.783 0.00 0.00 0.00 3.18
59 60 4.914312 TTGTTTATGAAGCGACCGTAAG 57.086 40.909 0.00 0.00 0.00 2.34
60 61 4.177165 TGTTTATGAAGCGACCGTAAGA 57.823 40.909 0.00 0.00 43.02 2.10
61 62 4.751060 TGTTTATGAAGCGACCGTAAGAT 58.249 39.130 0.00 0.00 43.02 2.40
62 63 5.172934 TGTTTATGAAGCGACCGTAAGATT 58.827 37.500 0.00 0.00 43.02 2.40
63 64 6.331845 TGTTTATGAAGCGACCGTAAGATTA 58.668 36.000 0.00 0.00 43.02 1.75
64 65 6.982141 TGTTTATGAAGCGACCGTAAGATTAT 59.018 34.615 0.00 0.00 43.02 1.28
65 66 7.168637 TGTTTATGAAGCGACCGTAAGATTATC 59.831 37.037 0.00 0.00 43.02 1.75
66 67 4.913335 TGAAGCGACCGTAAGATTATCT 57.087 40.909 0.00 0.00 43.02 1.98
67 68 4.856664 TGAAGCGACCGTAAGATTATCTC 58.143 43.478 0.00 0.00 43.02 2.75
68 69 3.539431 AGCGACCGTAAGATTATCTCG 57.461 47.619 0.00 0.00 43.02 4.04
69 70 2.225963 AGCGACCGTAAGATTATCTCGG 59.774 50.000 17.28 17.28 39.10 4.63
70 71 2.667724 GCGACCGTAAGATTATCTCGGG 60.668 54.545 21.13 13.39 37.96 5.14
71 72 2.551459 CGACCGTAAGATTATCTCGGGT 59.449 50.000 21.13 15.88 37.96 5.28
72 73 3.608707 CGACCGTAAGATTATCTCGGGTG 60.609 52.174 21.13 12.08 37.96 4.61
73 74 3.559069 ACCGTAAGATTATCTCGGGTGA 58.441 45.455 21.13 0.00 37.96 4.02
74 75 3.956199 ACCGTAAGATTATCTCGGGTGAA 59.044 43.478 21.13 0.00 37.96 3.18
75 76 4.037684 ACCGTAAGATTATCTCGGGTGAAG 59.962 45.833 21.13 1.96 37.96 3.02
76 77 4.277672 CCGTAAGATTATCTCGGGTGAAGA 59.722 45.833 12.74 0.00 43.02 2.87
77 78 5.221185 CCGTAAGATTATCTCGGGTGAAGAA 60.221 44.000 12.74 0.00 43.02 2.52
78 79 6.448006 CGTAAGATTATCTCGGGTGAAGAAT 58.552 40.000 0.00 0.00 43.02 2.40
79 80 7.309012 CCGTAAGATTATCTCGGGTGAAGAATA 60.309 40.741 12.74 0.00 43.02 1.75
80 81 8.080417 CGTAAGATTATCTCGGGTGAAGAATAA 58.920 37.037 0.00 0.00 43.02 1.40
81 82 9.194271 GTAAGATTATCTCGGGTGAAGAATAAC 57.806 37.037 0.00 0.00 0.00 1.89
82 83 7.604657 AGATTATCTCGGGTGAAGAATAACT 57.395 36.000 0.00 0.00 0.00 2.24
83 84 8.024145 AGATTATCTCGGGTGAAGAATAACTT 57.976 34.615 0.00 0.00 42.03 2.66
84 85 9.144298 AGATTATCTCGGGTGAAGAATAACTTA 57.856 33.333 0.00 0.00 39.13 2.24
85 86 9.930693 GATTATCTCGGGTGAAGAATAACTTAT 57.069 33.333 0.00 0.00 39.13 1.73
87 88 9.760077 TTATCTCGGGTGAAGAATAACTTATTC 57.240 33.333 12.07 12.07 43.77 1.75
98 99 6.566197 GAATAACTTATTCTGCATCCTGGG 57.434 41.667 12.55 0.00 41.00 4.45
99 100 5.653255 ATAACTTATTCTGCATCCTGGGT 57.347 39.130 0.00 0.00 0.00 4.51
100 101 3.287867 ACTTATTCTGCATCCTGGGTG 57.712 47.619 1.54 1.54 0.00 4.61
101 102 2.846206 ACTTATTCTGCATCCTGGGTGA 59.154 45.455 12.09 0.00 0.00 4.02
102 103 3.461085 ACTTATTCTGCATCCTGGGTGAT 59.539 43.478 12.09 0.00 0.00 3.06
103 104 2.359981 ATTCTGCATCCTGGGTGATG 57.640 50.000 12.09 2.06 44.02 3.07
104 105 1.288188 TTCTGCATCCTGGGTGATGA 58.712 50.000 12.09 4.66 43.94 2.92
105 106 1.288188 TCTGCATCCTGGGTGATGAA 58.712 50.000 12.09 0.00 43.94 2.57
106 107 1.848388 TCTGCATCCTGGGTGATGAAT 59.152 47.619 12.09 0.00 43.94 2.57
107 108 3.047857 TCTGCATCCTGGGTGATGAATA 58.952 45.455 12.09 0.00 43.94 1.75
108 109 3.072038 TCTGCATCCTGGGTGATGAATAG 59.928 47.826 12.09 0.00 43.94 1.73
109 110 2.779430 TGCATCCTGGGTGATGAATAGT 59.221 45.455 12.09 0.00 43.94 2.12
110 111 3.202818 TGCATCCTGGGTGATGAATAGTT 59.797 43.478 12.09 0.00 43.94 2.24
111 112 4.210331 GCATCCTGGGTGATGAATAGTTT 58.790 43.478 12.09 0.00 43.94 2.66
112 113 4.646492 GCATCCTGGGTGATGAATAGTTTT 59.354 41.667 12.09 0.00 43.94 2.43
113 114 5.827797 GCATCCTGGGTGATGAATAGTTTTA 59.172 40.000 12.09 0.00 43.94 1.52
114 115 6.238759 GCATCCTGGGTGATGAATAGTTTTAC 60.239 42.308 12.09 0.00 43.94 2.01
115 116 6.636454 TCCTGGGTGATGAATAGTTTTACT 57.364 37.500 0.00 0.00 0.00 2.24
116 117 7.743116 TCCTGGGTGATGAATAGTTTTACTA 57.257 36.000 0.00 0.00 34.82 1.82
117 118 7.792032 TCCTGGGTGATGAATAGTTTTACTAG 58.208 38.462 0.00 0.00 33.66 2.57
118 119 7.402071 TCCTGGGTGATGAATAGTTTTACTAGT 59.598 37.037 0.00 0.00 33.66 2.57
119 120 7.495934 CCTGGGTGATGAATAGTTTTACTAGTG 59.504 40.741 5.39 0.00 33.66 2.74
120 121 6.821665 TGGGTGATGAATAGTTTTACTAGTGC 59.178 38.462 5.39 0.00 33.66 4.40
121 122 6.821665 GGGTGATGAATAGTTTTACTAGTGCA 59.178 38.462 5.39 0.00 33.66 4.57
122 123 7.499232 GGGTGATGAATAGTTTTACTAGTGCAT 59.501 37.037 5.39 0.00 33.66 3.96
123 124 8.338259 GGTGATGAATAGTTTTACTAGTGCATG 58.662 37.037 5.39 0.00 33.66 4.06
124 125 7.852945 GTGATGAATAGTTTTACTAGTGCATGC 59.147 37.037 11.82 11.82 33.66 4.06
125 126 6.344572 TGAATAGTTTTACTAGTGCATGCG 57.655 37.500 14.09 0.35 33.66 4.73
126 127 5.293324 TGAATAGTTTTACTAGTGCATGCGG 59.707 40.000 14.09 5.75 33.66 5.69
127 128 3.328382 AGTTTTACTAGTGCATGCGGA 57.672 42.857 14.09 0.00 0.00 5.54
128 129 3.873910 AGTTTTACTAGTGCATGCGGAT 58.126 40.909 14.09 3.65 0.00 4.18
129 130 5.018539 AGTTTTACTAGTGCATGCGGATA 57.981 39.130 14.09 4.72 0.00 2.59
130 131 5.611374 AGTTTTACTAGTGCATGCGGATAT 58.389 37.500 14.09 0.77 0.00 1.63
131 132 6.055588 AGTTTTACTAGTGCATGCGGATATT 58.944 36.000 14.09 2.77 0.00 1.28
132 133 7.214381 AGTTTTACTAGTGCATGCGGATATTA 58.786 34.615 14.09 1.83 0.00 0.98
133 134 7.713507 AGTTTTACTAGTGCATGCGGATATTAA 59.286 33.333 14.09 7.59 0.00 1.40
134 135 7.652300 TTTACTAGTGCATGCGGATATTAAG 57.348 36.000 14.09 4.35 0.00 1.85
135 136 5.215252 ACTAGTGCATGCGGATATTAAGT 57.785 39.130 14.09 4.97 0.00 2.24
136 137 6.340962 ACTAGTGCATGCGGATATTAAGTA 57.659 37.500 14.09 0.00 0.00 2.24
137 138 6.390721 ACTAGTGCATGCGGATATTAAGTAG 58.609 40.000 14.09 11.27 0.00 2.57
138 139 4.569943 AGTGCATGCGGATATTAAGTAGG 58.430 43.478 14.09 0.00 0.00 3.18
139 140 4.283467 AGTGCATGCGGATATTAAGTAGGA 59.717 41.667 14.09 0.00 0.00 2.94
140 141 5.046304 AGTGCATGCGGATATTAAGTAGGAT 60.046 40.000 14.09 0.00 0.00 3.24
141 142 6.154534 AGTGCATGCGGATATTAAGTAGGATA 59.845 38.462 14.09 0.00 0.00 2.59
142 143 6.986817 GTGCATGCGGATATTAAGTAGGATAT 59.013 38.462 14.09 0.00 0.00 1.63
143 144 7.495934 GTGCATGCGGATATTAAGTAGGATATT 59.504 37.037 14.09 0.00 0.00 1.28
144 145 8.700973 TGCATGCGGATATTAAGTAGGATATTA 58.299 33.333 14.09 0.00 0.00 0.98
145 146 9.712305 GCATGCGGATATTAAGTAGGATATTAT 57.288 33.333 0.00 0.00 0.00 1.28
168 169 9.658475 TTATTTGCGTGTTATTATGTGATTAGC 57.342 29.630 0.00 0.00 0.00 3.09
169 170 6.670077 TTGCGTGTTATTATGTGATTAGCA 57.330 33.333 0.00 0.00 0.00 3.49
201 202 5.947503 GCATGAAATTAAATGCACGCTAA 57.052 34.783 16.48 0.00 46.75 3.09
202 203 6.329838 GCATGAAATTAAATGCACGCTAAA 57.670 33.333 16.48 0.00 46.75 1.85
203 204 6.177822 GCATGAAATTAAATGCACGCTAAAC 58.822 36.000 16.48 0.00 46.75 2.01
204 205 6.984641 GCATGAAATTAAATGCACGCTAAACG 60.985 38.462 16.48 0.00 46.75 3.60
214 215 4.417240 GCTAAACGTGTTGAGCGC 57.583 55.556 6.34 0.00 37.32 5.92
215 216 1.860078 GCTAAACGTGTTGAGCGCT 59.140 52.632 11.27 11.27 37.32 5.92
216 217 0.179248 GCTAAACGTGTTGAGCGCTC 60.179 55.000 30.42 30.42 37.32 5.03
217 218 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.000 30.75 21.89 0.00 5.03
218 219 0.318022 TAAACGTGTTGAGCGCTCGA 60.318 50.000 30.75 27.40 0.00 4.04
219 220 1.818221 AAACGTGTTGAGCGCTCGAC 61.818 55.000 39.44 39.44 42.86 4.20
222 223 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
223 224 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
224 225 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
225 226 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
226 227 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
227 228 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
229 230 2.697425 CGCTCGACATTGAAGCGG 59.303 61.111 18.32 6.49 44.06 5.52
230 231 2.094659 CGCTCGACATTGAAGCGGT 61.095 57.895 18.32 0.00 44.06 5.68
231 232 1.710339 GCTCGACATTGAAGCGGTC 59.290 57.895 0.00 0.00 0.00 4.79
232 233 0.737715 GCTCGACATTGAAGCGGTCT 60.738 55.000 0.00 0.00 0.00 3.85
233 234 1.469251 GCTCGACATTGAAGCGGTCTA 60.469 52.381 0.00 0.00 0.00 2.59
234 235 2.455032 CTCGACATTGAAGCGGTCTAG 58.545 52.381 0.00 0.00 0.00 2.43
235 236 1.134367 TCGACATTGAAGCGGTCTAGG 59.866 52.381 0.00 0.00 0.00 3.02
236 237 1.135083 CGACATTGAAGCGGTCTAGGT 60.135 52.381 0.00 0.00 0.00 3.08
237 238 2.541556 GACATTGAAGCGGTCTAGGTC 58.458 52.381 4.60 4.60 36.05 3.85
238 239 1.899814 ACATTGAAGCGGTCTAGGTCA 59.100 47.619 0.00 0.00 0.00 4.02
239 240 2.501723 ACATTGAAGCGGTCTAGGTCAT 59.498 45.455 0.00 0.00 0.00 3.06
240 241 3.055094 ACATTGAAGCGGTCTAGGTCATT 60.055 43.478 0.00 0.00 0.00 2.57
241 242 2.672961 TGAAGCGGTCTAGGTCATTG 57.327 50.000 0.00 0.00 0.00 2.82
242 243 1.207089 TGAAGCGGTCTAGGTCATTGG 59.793 52.381 0.00 0.00 0.00 3.16
243 244 1.480954 GAAGCGGTCTAGGTCATTGGA 59.519 52.381 0.00 0.00 0.00 3.53
244 245 1.794714 AGCGGTCTAGGTCATTGGAT 58.205 50.000 0.00 0.00 0.00 3.41
245 246 1.689273 AGCGGTCTAGGTCATTGGATC 59.311 52.381 0.00 0.00 0.00 3.36
246 247 1.603172 GCGGTCTAGGTCATTGGATCG 60.603 57.143 0.00 0.00 35.71 3.69
247 248 1.954382 CGGTCTAGGTCATTGGATCGA 59.046 52.381 0.00 0.00 34.71 3.59
248 249 2.287668 CGGTCTAGGTCATTGGATCGAC 60.288 54.545 0.00 0.00 34.71 4.20
249 250 2.693591 GGTCTAGGTCATTGGATCGACA 59.306 50.000 0.00 0.00 33.66 4.35
250 251 3.322254 GGTCTAGGTCATTGGATCGACAT 59.678 47.826 0.00 0.00 33.66 3.06
251 252 4.302455 GTCTAGGTCATTGGATCGACATG 58.698 47.826 0.00 0.00 33.66 3.21
252 253 4.038042 GTCTAGGTCATTGGATCGACATGA 59.962 45.833 0.00 0.00 33.66 3.07
253 254 4.835056 TCTAGGTCATTGGATCGACATGAT 59.165 41.667 0.00 0.00 41.06 2.45
254 255 4.428294 AGGTCATTGGATCGACATGATT 57.572 40.909 0.00 0.00 37.47 2.57
255 256 4.785301 AGGTCATTGGATCGACATGATTT 58.215 39.130 0.00 0.00 37.47 2.17
256 257 5.928976 AGGTCATTGGATCGACATGATTTA 58.071 37.500 0.00 0.00 37.47 1.40
257 258 6.356556 AGGTCATTGGATCGACATGATTTAA 58.643 36.000 0.00 0.00 37.47 1.52
258 259 7.000472 AGGTCATTGGATCGACATGATTTAAT 59.000 34.615 0.00 0.00 37.47 1.40
259 260 7.040892 AGGTCATTGGATCGACATGATTTAATG 60.041 37.037 0.00 1.61 39.52 1.90
260 261 7.080099 GTCATTGGATCGACATGATTTAATGG 58.920 38.462 0.00 0.00 39.12 3.16
261 262 6.997476 TCATTGGATCGACATGATTTAATGGA 59.003 34.615 0.00 0.00 39.12 3.41
262 263 6.618287 TTGGATCGACATGATTTAATGGAC 57.382 37.500 0.00 0.00 37.47 4.02
263 264 4.749598 TGGATCGACATGATTTAATGGACG 59.250 41.667 0.00 0.00 37.47 4.79
264 265 4.988540 GGATCGACATGATTTAATGGACGA 59.011 41.667 0.00 0.00 41.13 4.20
265 266 5.119279 GGATCGACATGATTTAATGGACGAG 59.881 44.000 0.00 0.00 40.66 4.18
266 267 5.257082 TCGACATGATTTAATGGACGAGA 57.743 39.130 0.00 0.00 36.41 4.04
267 268 5.842907 TCGACATGATTTAATGGACGAGAT 58.157 37.500 0.00 0.00 36.41 2.75
268 269 6.280643 TCGACATGATTTAATGGACGAGATT 58.719 36.000 0.00 0.00 36.41 2.40
269 270 7.430441 TCGACATGATTTAATGGACGAGATTA 58.570 34.615 0.00 0.00 36.41 1.75
270 271 7.923878 TCGACATGATTTAATGGACGAGATTAA 59.076 33.333 0.00 0.00 36.41 1.40
271 272 8.712363 CGACATGATTTAATGGACGAGATTAAT 58.288 33.333 0.00 0.00 35.24 1.40
289 290 7.998753 GATTAATTGAATCTGCTCTTTTGGG 57.001 36.000 0.00 0.00 40.84 4.12
290 291 6.916360 TTAATTGAATCTGCTCTTTTGGGT 57.084 33.333 0.00 0.00 0.00 4.51
291 292 5.397142 AATTGAATCTGCTCTTTTGGGTC 57.603 39.130 0.00 0.00 0.00 4.46
292 293 3.795688 TGAATCTGCTCTTTTGGGTCT 57.204 42.857 0.00 0.00 0.00 3.85
293 294 4.104383 TGAATCTGCTCTTTTGGGTCTT 57.896 40.909 0.00 0.00 0.00 3.01
294 295 4.473444 TGAATCTGCTCTTTTGGGTCTTT 58.527 39.130 0.00 0.00 0.00 2.52
295 296 4.895297 TGAATCTGCTCTTTTGGGTCTTTT 59.105 37.500 0.00 0.00 0.00 2.27
296 297 5.363580 TGAATCTGCTCTTTTGGGTCTTTTT 59.636 36.000 0.00 0.00 0.00 1.94
297 298 6.549364 TGAATCTGCTCTTTTGGGTCTTTTTA 59.451 34.615 0.00 0.00 0.00 1.52
298 299 7.233348 TGAATCTGCTCTTTTGGGTCTTTTTAT 59.767 33.333 0.00 0.00 0.00 1.40
299 300 8.650143 AATCTGCTCTTTTGGGTCTTTTTATA 57.350 30.769 0.00 0.00 0.00 0.98
300 301 8.829373 ATCTGCTCTTTTGGGTCTTTTTATAT 57.171 30.769 0.00 0.00 0.00 0.86
301 302 8.650143 TCTGCTCTTTTGGGTCTTTTTATATT 57.350 30.769 0.00 0.00 0.00 1.28
302 303 8.522830 TCTGCTCTTTTGGGTCTTTTTATATTG 58.477 33.333 0.00 0.00 0.00 1.90
303 304 7.610865 TGCTCTTTTGGGTCTTTTTATATTGG 58.389 34.615 0.00 0.00 0.00 3.16
304 305 7.234577 TGCTCTTTTGGGTCTTTTTATATTGGT 59.765 33.333 0.00 0.00 0.00 3.67
305 306 7.545615 GCTCTTTTGGGTCTTTTTATATTGGTG 59.454 37.037 0.00 0.00 0.00 4.17
306 307 8.485578 TCTTTTGGGTCTTTTTATATTGGTGT 57.514 30.769 0.00 0.00 0.00 4.16
307 308 9.589461 TCTTTTGGGTCTTTTTATATTGGTGTA 57.411 29.630 0.00 0.00 0.00 2.90
308 309 9.855021 CTTTTGGGTCTTTTTATATTGGTGTAG 57.145 33.333 0.00 0.00 0.00 2.74
309 310 9.589461 TTTTGGGTCTTTTTATATTGGTGTAGA 57.411 29.630 0.00 0.00 0.00 2.59
310 311 9.762381 TTTGGGTCTTTTTATATTGGTGTAGAT 57.238 29.630 0.00 0.00 0.00 1.98
357 359 5.710513 TTGACACCTCAAGATCCATTTTG 57.289 39.130 0.00 0.00 32.33 2.44
358 360 3.507233 TGACACCTCAAGATCCATTTTGC 59.493 43.478 0.00 0.00 0.00 3.68
359 361 3.499338 ACACCTCAAGATCCATTTTGCA 58.501 40.909 0.00 0.00 0.00 4.08
360 362 3.508793 ACACCTCAAGATCCATTTTGCAG 59.491 43.478 0.00 0.00 0.00 4.41
361 363 3.760151 CACCTCAAGATCCATTTTGCAGA 59.240 43.478 0.00 0.00 0.00 4.26
362 364 4.401519 CACCTCAAGATCCATTTTGCAGAT 59.598 41.667 0.00 0.00 0.00 2.90
363 365 4.643784 ACCTCAAGATCCATTTTGCAGATC 59.356 41.667 5.05 5.05 37.31 2.75
364 366 4.037684 CCTCAAGATCCATTTTGCAGATCC 59.962 45.833 8.77 0.00 37.69 3.36
365 367 4.863548 TCAAGATCCATTTTGCAGATCCT 58.136 39.130 8.77 0.00 37.69 3.24
366 368 4.885907 TCAAGATCCATTTTGCAGATCCTC 59.114 41.667 8.77 0.00 37.69 3.71
367 369 4.515028 AGATCCATTTTGCAGATCCTCA 57.485 40.909 8.77 0.00 37.69 3.86
368 370 4.863548 AGATCCATTTTGCAGATCCTCAA 58.136 39.130 8.77 0.00 37.69 3.02
369 371 5.266788 AGATCCATTTTGCAGATCCTCAAA 58.733 37.500 8.77 6.03 37.69 2.69
370 372 5.360144 AGATCCATTTTGCAGATCCTCAAAG 59.640 40.000 8.77 1.79 37.69 2.77
371 373 4.665451 TCCATTTTGCAGATCCTCAAAGA 58.335 39.130 9.14 3.27 34.21 2.52
372 374 5.078949 TCCATTTTGCAGATCCTCAAAGAA 58.921 37.500 9.14 0.00 34.21 2.52
373 375 5.539574 TCCATTTTGCAGATCCTCAAAGAAA 59.460 36.000 9.14 0.00 34.21 2.52
374 376 6.041865 TCCATTTTGCAGATCCTCAAAGAAAA 59.958 34.615 9.14 0.00 34.21 2.29
375 377 6.707161 CCATTTTGCAGATCCTCAAAGAAAAA 59.293 34.615 9.14 0.00 34.21 1.94
529 536 2.510613 CCCGAAAATAACACCACACCT 58.489 47.619 0.00 0.00 0.00 4.00
550 557 3.197983 TCCCATTTTATCCACTCCCACT 58.802 45.455 0.00 0.00 0.00 4.00
567 574 6.271159 ACTCCCACTCTATCCATTTCCTAATC 59.729 42.308 0.00 0.00 0.00 1.75
568 575 5.548056 TCCCACTCTATCCATTTCCTAATCC 59.452 44.000 0.00 0.00 0.00 3.01
648 655 1.302192 CGGAGCCCGGAAACAGAAA 60.302 57.895 0.73 0.00 44.15 2.52
649 656 1.298859 CGGAGCCCGGAAACAGAAAG 61.299 60.000 0.73 0.00 44.15 2.62
650 657 0.036306 GGAGCCCGGAAACAGAAAGA 59.964 55.000 0.73 0.00 0.00 2.52
651 658 1.340114 GGAGCCCGGAAACAGAAAGAT 60.340 52.381 0.73 0.00 0.00 2.40
652 659 1.740025 GAGCCCGGAAACAGAAAGATG 59.260 52.381 0.73 0.00 0.00 2.90
653 660 0.811281 GCCCGGAAACAGAAAGATGG 59.189 55.000 0.73 0.00 0.00 3.51
654 661 1.463674 CCCGGAAACAGAAAGATGGG 58.536 55.000 0.73 0.00 0.00 4.00
655 662 0.811281 CCGGAAACAGAAAGATGGGC 59.189 55.000 0.00 0.00 0.00 5.36
656 663 0.447801 CGGAAACAGAAAGATGGGCG 59.552 55.000 0.00 0.00 0.00 6.13
657 664 1.821216 GGAAACAGAAAGATGGGCGA 58.179 50.000 0.00 0.00 0.00 5.54
658 665 2.369394 GGAAACAGAAAGATGGGCGAT 58.631 47.619 0.00 0.00 0.00 4.58
659 666 2.356069 GGAAACAGAAAGATGGGCGATC 59.644 50.000 0.65 0.65 0.00 3.69
660 667 2.044123 AACAGAAAGATGGGCGATCC 57.956 50.000 5.83 0.00 0.00 3.36
767 789 3.416156 CTCCCTCCAACAAAGAAGGAAG 58.584 50.000 0.00 0.00 0.00 3.46
768 790 2.108250 TCCCTCCAACAAAGAAGGAAGG 59.892 50.000 0.00 0.00 34.87 3.46
769 791 2.108250 CCCTCCAACAAAGAAGGAAGGA 59.892 50.000 0.00 0.00 35.44 3.36
770 792 3.436470 CCCTCCAACAAAGAAGGAAGGAA 60.436 47.826 0.00 0.00 35.44 3.36
771 793 3.570125 CCTCCAACAAAGAAGGAAGGAAC 59.430 47.826 0.00 0.00 0.00 3.62
772 794 3.211045 TCCAACAAAGAAGGAAGGAACG 58.789 45.455 0.00 0.00 0.00 3.95
773 795 3.118186 TCCAACAAAGAAGGAAGGAACGA 60.118 43.478 0.00 0.00 0.00 3.85
774 796 3.630312 CCAACAAAGAAGGAAGGAACGAA 59.370 43.478 0.00 0.00 0.00 3.85
775 797 4.261197 CCAACAAAGAAGGAAGGAACGAAG 60.261 45.833 0.00 0.00 0.00 3.79
776 798 3.477530 ACAAAGAAGGAAGGAACGAAGG 58.522 45.455 0.00 0.00 0.00 3.46
777 799 3.135895 ACAAAGAAGGAAGGAACGAAGGA 59.864 43.478 0.00 0.00 0.00 3.36
778 800 3.686916 AAGAAGGAAGGAACGAAGGAG 57.313 47.619 0.00 0.00 0.00 3.69
793 815 2.202987 GAGGATCCACTGCGCCTG 60.203 66.667 15.82 0.00 0.00 4.85
820 842 4.935495 CTGCGCCACACACACCCT 62.935 66.667 4.18 0.00 0.00 4.34
829 851 1.145156 CACACACCCTTCGACACCA 59.855 57.895 0.00 0.00 0.00 4.17
844 866 6.045072 TCGACACCAAAGGTAATAATCAGT 57.955 37.500 0.00 0.00 32.11 3.41
855 877 5.676811 AGGTAATAATCAGTTCCATCCCCTT 59.323 40.000 0.00 0.00 0.00 3.95
856 878 5.770162 GGTAATAATCAGTTCCATCCCCTTG 59.230 44.000 0.00 0.00 0.00 3.61
862 898 2.316586 TTCCATCCCCTTGCCCCTC 61.317 63.158 0.00 0.00 0.00 4.30
865 901 4.058505 ATCCCCTTGCCCCTCCCT 62.059 66.667 0.00 0.00 0.00 4.20
924 960 3.255642 CGGAGGAAGAAGAGGAGATGATC 59.744 52.174 0.00 0.00 0.00 2.92
961 1008 1.337387 GGCTCCTGATCTACCACGTAC 59.663 57.143 0.00 0.00 0.00 3.67
962 1009 1.002684 GCTCCTGATCTACCACGTACG 60.003 57.143 15.01 15.01 0.00 3.67
963 1010 2.286872 CTCCTGATCTACCACGTACGT 58.713 52.381 16.72 16.72 0.00 3.57
964 1011 2.011947 TCCTGATCTACCACGTACGTG 58.988 52.381 35.57 35.57 45.02 4.49
965 1012 1.533338 CCTGATCTACCACGTACGTGC 60.533 57.143 36.76 24.16 44.16 5.34
966 1013 1.131693 CTGATCTACCACGTACGTGCA 59.868 52.381 36.76 26.85 44.16 4.57
967 1014 1.540707 TGATCTACCACGTACGTGCAA 59.459 47.619 36.76 26.02 44.16 4.08
982 1029 1.797537 GCAACGCGCAGGTTTGATC 60.798 57.895 5.73 0.00 41.79 2.92
993 1040 0.921347 GGTTTGATCGGATCGTCGTG 59.079 55.000 12.99 0.00 0.00 4.35
994 1041 0.297820 GTTTGATCGGATCGTCGTGC 59.702 55.000 12.99 0.00 0.00 5.34
1102 1149 2.231540 CTCCTTCTCCCCGTCCTCCT 62.232 65.000 0.00 0.00 0.00 3.69
1273 1323 3.607299 TCCCCGACTCCCCCTTCA 61.607 66.667 0.00 0.00 0.00 3.02
1475 1546 3.322466 CAGGAGCCCCACCGTCTT 61.322 66.667 0.00 0.00 33.88 3.01
1526 1597 4.524053 ACCGAATATCCCCTCTTGTTTTC 58.476 43.478 0.00 0.00 0.00 2.29
1530 1601 2.115343 ATCCCCTCTTGTTTTCGAGC 57.885 50.000 0.00 0.00 0.00 5.03
1542 1613 1.565156 TTTCGAGCGCACCACATCAC 61.565 55.000 11.47 0.00 0.00 3.06
1615 1690 5.374921 CATAAATCTGATGCCTCTGAACCT 58.625 41.667 2.87 0.00 33.66 3.50
1619 1694 2.027745 TCTGATGCCTCTGAACCTTGTC 60.028 50.000 0.00 0.00 0.00 3.18
1623 1698 2.050144 TGCCTCTGAACCTTGTCTCTT 58.950 47.619 0.00 0.00 0.00 2.85
1795 1882 4.804139 TGTACGTACTAGTACTACTTCCGC 59.196 45.833 26.36 11.05 45.23 5.54
1882 1983 3.555168 CGAGTGGTAGCTCAAGGAAAACT 60.555 47.826 0.00 0.00 35.33 2.66
2113 2218 2.868583 CTCCTGTGATTATTGTCAGGCG 59.131 50.000 5.33 0.00 44.76 5.52
2129 2234 2.663196 CGTCCTCCCTGGTTGGTC 59.337 66.667 0.00 0.00 37.07 4.02
2171 2276 4.730613 GCACCAATAATTTGCTCGATTCGT 60.731 41.667 5.89 0.00 33.26 3.85
2207 2312 5.233050 GTGTCAGATCGATGTGAAGGTTATG 59.767 44.000 25.09 0.00 31.46 1.90
2215 2320 3.483808 TGTGAAGGTTATGTGTGCTCA 57.516 42.857 0.00 0.00 0.00 4.26
2246 2351 3.583966 TGTACGGTTAGGGTCAAAAGGAT 59.416 43.478 0.00 0.00 0.00 3.24
2260 2365 1.306141 AGGATGGGCCTCTTGACGA 60.306 57.895 4.53 0.00 46.97 4.20
2278 2383 1.137086 CGATTTGACAGATCGGAGGGT 59.863 52.381 18.09 0.00 41.89 4.34
2329 2439 0.320374 ACCTCATTTGCCGACGAGAA 59.680 50.000 0.00 0.00 0.00 2.87
2356 2466 4.857588 GGATATTTATCGATCGTTGAGCGT 59.142 41.667 15.94 0.00 42.30 5.07
2379 2489 5.746990 TTTGGTGAAGGTTTTCAAGGAAA 57.253 34.783 0.00 0.00 44.49 3.13
2385 2499 6.209361 GTGAAGGTTTTCAAGGAAAGTCATC 58.791 40.000 0.00 0.00 44.49 2.92
2387 2501 6.379703 TGAAGGTTTTCAAGGAAAGTCATCAA 59.620 34.615 0.00 0.00 40.26 2.57
2449 2567 4.503741 GCAGCATGGTCTTTCTAAAACA 57.496 40.909 0.00 0.00 35.86 2.83
2450 2568 4.870363 GCAGCATGGTCTTTCTAAAACAA 58.130 39.130 0.00 0.00 35.86 2.83
2451 2569 5.288804 GCAGCATGGTCTTTCTAAAACAAA 58.711 37.500 0.00 0.00 35.86 2.83
2452 2570 5.403466 GCAGCATGGTCTTTCTAAAACAAAG 59.597 40.000 0.00 0.00 35.86 2.77
2453 2571 6.507023 CAGCATGGTCTTTCTAAAACAAAGT 58.493 36.000 0.00 0.00 33.32 2.66
2454 2572 6.418819 CAGCATGGTCTTTCTAAAACAAAGTG 59.581 38.462 0.00 0.00 33.32 3.16
2455 2573 6.321181 AGCATGGTCTTTCTAAAACAAAGTGA 59.679 34.615 0.00 0.00 33.32 3.41
2456 2574 6.638468 GCATGGTCTTTCTAAAACAAAGTGAG 59.362 38.462 0.00 0.00 33.32 3.51
2457 2575 7.682021 GCATGGTCTTTCTAAAACAAAGTGAGT 60.682 37.037 0.00 0.00 33.32 3.41
2458 2576 7.316544 TGGTCTTTCTAAAACAAAGTGAGTC 57.683 36.000 0.00 0.00 33.32 3.36
2459 2577 7.110155 TGGTCTTTCTAAAACAAAGTGAGTCT 58.890 34.615 0.00 0.00 33.32 3.24
2460 2578 7.280205 TGGTCTTTCTAAAACAAAGTGAGTCTC 59.720 37.037 0.00 0.00 33.32 3.36
2461 2579 7.496263 GGTCTTTCTAAAACAAAGTGAGTCTCT 59.504 37.037 0.65 0.00 33.32 3.10
2462 2580 9.530633 GTCTTTCTAAAACAAAGTGAGTCTCTA 57.469 33.333 0.65 0.00 33.32 2.43
2463 2581 9.751542 TCTTTCTAAAACAAAGTGAGTCTCTAG 57.248 33.333 0.65 0.00 33.32 2.43
2464 2582 9.535878 CTTTCTAAAACAAAGTGAGTCTCTAGT 57.464 33.333 0.65 0.00 0.00 2.57
2465 2583 9.886132 TTTCTAAAACAAAGTGAGTCTCTAGTT 57.114 29.630 0.65 1.79 0.00 2.24
2466 2584 9.886132 TTCTAAAACAAAGTGAGTCTCTAGTTT 57.114 29.630 14.81 14.81 0.00 2.66
2467 2585 9.886132 TCTAAAACAAAGTGAGTCTCTAGTTTT 57.114 29.630 25.31 25.31 37.66 2.43
2498 2616 7.736447 TTTTGAGAGAGAAAAGGTGAATCTC 57.264 36.000 0.00 0.00 39.88 2.75
2503 2621 4.904241 AGAGAAAAGGTGAATCTCTGGTG 58.096 43.478 3.87 0.00 46.11 4.17
2504 2622 4.594920 AGAGAAAAGGTGAATCTCTGGTGA 59.405 41.667 3.87 0.00 46.11 4.02
2505 2623 4.904241 AGAAAAGGTGAATCTCTGGTGAG 58.096 43.478 0.00 0.00 41.51 3.51
2506 2624 2.777832 AAGGTGAATCTCTGGTGAGC 57.222 50.000 0.00 0.00 40.03 4.26
2507 2625 0.908198 AGGTGAATCTCTGGTGAGCC 59.092 55.000 0.00 0.00 40.03 4.70
2508 2626 0.615331 GGTGAATCTCTGGTGAGCCA 59.385 55.000 0.00 0.00 43.73 4.75
2509 2627 1.677217 GGTGAATCTCTGGTGAGCCAC 60.677 57.143 0.00 0.00 40.46 5.01
2510 2628 1.277557 GTGAATCTCTGGTGAGCCACT 59.722 52.381 5.48 0.00 40.46 4.00
2511 2629 1.552337 TGAATCTCTGGTGAGCCACTC 59.448 52.381 5.48 0.00 40.46 3.51
2512 2630 0.908198 AATCTCTGGTGAGCCACTCC 59.092 55.000 5.48 0.00 40.46 3.85
2513 2631 0.042431 ATCTCTGGTGAGCCACTCCT 59.958 55.000 5.48 0.00 40.46 3.69
2514 2632 0.613292 TCTCTGGTGAGCCACTCCTC 60.613 60.000 5.48 0.00 40.46 3.71
2515 2633 0.614415 CTCTGGTGAGCCACTCCTCT 60.614 60.000 5.48 0.00 40.46 3.69
2516 2634 0.902048 TCTGGTGAGCCACTCCTCTG 60.902 60.000 5.48 0.00 40.46 3.35
2517 2635 0.902048 CTGGTGAGCCACTCCTCTGA 60.902 60.000 5.48 0.00 40.46 3.27
2518 2636 0.252421 TGGTGAGCCACTCCTCTGAT 60.252 55.000 5.48 0.00 40.46 2.90
2519 2637 1.007118 TGGTGAGCCACTCCTCTGATA 59.993 52.381 5.48 0.00 40.46 2.15
2520 2638 1.686052 GGTGAGCCACTCCTCTGATAG 59.314 57.143 5.48 0.00 34.40 2.08
2521 2639 2.660572 GTGAGCCACTCCTCTGATAGA 58.339 52.381 0.00 0.00 33.02 1.98
2522 2640 3.230134 GTGAGCCACTCCTCTGATAGAT 58.770 50.000 0.00 0.00 33.02 1.98
2523 2641 3.640967 GTGAGCCACTCCTCTGATAGATT 59.359 47.826 0.00 0.00 33.02 2.40
2524 2642 4.830046 GTGAGCCACTCCTCTGATAGATTA 59.170 45.833 0.00 0.00 33.02 1.75
2525 2643 5.480073 GTGAGCCACTCCTCTGATAGATTAT 59.520 44.000 0.00 0.00 33.02 1.28
2526 2644 6.014669 GTGAGCCACTCCTCTGATAGATTATT 60.015 42.308 0.00 0.00 33.02 1.40
2527 2645 6.014755 TGAGCCACTCCTCTGATAGATTATTG 60.015 42.308 0.00 0.00 33.02 1.90
2528 2646 5.843421 AGCCACTCCTCTGATAGATTATTGT 59.157 40.000 0.00 0.00 0.00 2.71
2529 2647 7.013220 AGCCACTCCTCTGATAGATTATTGTA 58.987 38.462 0.00 0.00 0.00 2.41
2530 2648 7.510685 AGCCACTCCTCTGATAGATTATTGTAA 59.489 37.037 0.00 0.00 0.00 2.41
2531 2649 7.816995 GCCACTCCTCTGATAGATTATTGTAAG 59.183 40.741 0.00 0.00 0.00 2.34
2532 2650 8.310382 CCACTCCTCTGATAGATTATTGTAAGG 58.690 40.741 0.00 0.00 0.00 2.69
2533 2651 8.865090 CACTCCTCTGATAGATTATTGTAAGGT 58.135 37.037 0.00 0.00 0.00 3.50
2544 2662 8.980832 AGATTATTGTAAGGTATCCATCCTCT 57.019 34.615 0.00 0.00 33.76 3.69
2545 2663 9.398921 AGATTATTGTAAGGTATCCATCCTCTT 57.601 33.333 0.00 0.00 33.76 2.85
2546 2664 9.660180 GATTATTGTAAGGTATCCATCCTCTTC 57.340 37.037 0.00 0.00 33.76 2.87
2547 2665 8.798975 TTATTGTAAGGTATCCATCCTCTTCT 57.201 34.615 0.00 0.00 33.76 2.85
2548 2666 7.698163 ATTGTAAGGTATCCATCCTCTTCTT 57.302 36.000 0.00 0.00 33.76 2.52
2549 2667 6.485830 TGTAAGGTATCCATCCTCTTCTTG 57.514 41.667 0.00 0.00 33.76 3.02
2550 2668 4.429854 AAGGTATCCATCCTCTTCTTGC 57.570 45.455 0.00 0.00 33.76 4.01
2551 2669 3.663198 AGGTATCCATCCTCTTCTTGCT 58.337 45.455 0.00 0.00 0.00 3.91
2552 2670 4.043596 AGGTATCCATCCTCTTCTTGCTT 58.956 43.478 0.00 0.00 0.00 3.91
2553 2671 5.219739 AGGTATCCATCCTCTTCTTGCTTA 58.780 41.667 0.00 0.00 0.00 3.09
2554 2672 5.306678 AGGTATCCATCCTCTTCTTGCTTAG 59.693 44.000 0.00 0.00 0.00 2.18
2555 2673 4.703379 ATCCATCCTCTTCTTGCTTAGG 57.297 45.455 0.00 0.00 0.00 2.69
2556 2674 2.774234 TCCATCCTCTTCTTGCTTAGGG 59.226 50.000 0.00 0.00 0.00 3.53
2557 2675 2.570135 CATCCTCTTCTTGCTTAGGGC 58.430 52.381 0.00 0.00 42.22 5.19
2558 2676 1.958288 TCCTCTTCTTGCTTAGGGCT 58.042 50.000 0.00 0.00 42.39 5.19
2559 2677 1.556911 TCCTCTTCTTGCTTAGGGCTG 59.443 52.381 0.00 0.00 42.39 4.85
2560 2678 1.407989 CCTCTTCTTGCTTAGGGCTGG 60.408 57.143 0.00 0.00 42.39 4.85
2561 2679 1.280421 CTCTTCTTGCTTAGGGCTGGT 59.720 52.381 0.00 0.00 42.39 4.00
2562 2680 1.705186 TCTTCTTGCTTAGGGCTGGTT 59.295 47.619 0.00 0.00 42.39 3.67
2563 2681 2.087646 CTTCTTGCTTAGGGCTGGTTC 58.912 52.381 0.00 0.00 42.39 3.62
2564 2682 1.064003 TCTTGCTTAGGGCTGGTTCA 58.936 50.000 0.00 0.00 42.39 3.18
2565 2683 1.003580 TCTTGCTTAGGGCTGGTTCAG 59.996 52.381 0.00 0.00 42.39 3.02
2566 2684 1.003580 CTTGCTTAGGGCTGGTTCAGA 59.996 52.381 0.00 0.00 42.39 3.27
2567 2685 0.615331 TGCTTAGGGCTGGTTCAGAG 59.385 55.000 0.00 0.00 42.39 3.35
2568 2686 0.905357 GCTTAGGGCTGGTTCAGAGA 59.095 55.000 0.00 0.00 38.06 3.10
2569 2687 1.279271 GCTTAGGGCTGGTTCAGAGAA 59.721 52.381 0.00 0.00 38.06 2.87
2570 2688 2.290323 GCTTAGGGCTGGTTCAGAGAAA 60.290 50.000 0.00 0.00 38.06 2.52
2571 2689 3.810743 GCTTAGGGCTGGTTCAGAGAAAA 60.811 47.826 0.00 0.00 38.06 2.29
2572 2690 2.575805 AGGGCTGGTTCAGAGAAAAG 57.424 50.000 0.00 0.00 32.44 2.27
2573 2691 1.074566 AGGGCTGGTTCAGAGAAAAGG 59.925 52.381 0.00 0.00 32.44 3.11
2574 2692 0.884514 GGCTGGTTCAGAGAAAAGGC 59.115 55.000 0.00 0.00 32.44 4.35
2575 2693 1.609208 GCTGGTTCAGAGAAAAGGCA 58.391 50.000 0.00 0.00 32.44 4.75
2576 2694 1.268079 GCTGGTTCAGAGAAAAGGCAC 59.732 52.381 0.00 0.00 32.44 5.01
2577 2695 1.532868 CTGGTTCAGAGAAAAGGCACG 59.467 52.381 0.00 0.00 32.44 5.34
2578 2696 0.875059 GGTTCAGAGAAAAGGCACGG 59.125 55.000 0.00 0.00 0.00 4.94
2579 2697 0.238553 GTTCAGAGAAAAGGCACGGC 59.761 55.000 0.00 0.00 0.00 5.68
2580 2698 0.179032 TTCAGAGAAAAGGCACGGCA 60.179 50.000 0.00 0.00 0.00 5.69
2581 2699 0.884704 TCAGAGAAAAGGCACGGCAC 60.885 55.000 0.00 0.00 0.00 5.01
2582 2700 1.600916 AGAGAAAAGGCACGGCACC 60.601 57.895 0.00 0.00 0.00 5.01
2583 2701 1.896660 GAGAAAAGGCACGGCACCA 60.897 57.895 0.00 0.00 0.00 4.17
2584 2702 1.452145 GAGAAAAGGCACGGCACCAA 61.452 55.000 0.00 0.00 0.00 3.67
2585 2703 0.827507 AGAAAAGGCACGGCACCAAT 60.828 50.000 0.00 0.00 0.00 3.16
2586 2704 0.885196 GAAAAGGCACGGCACCAATA 59.115 50.000 0.00 0.00 0.00 1.90
2587 2705 1.271102 GAAAAGGCACGGCACCAATAA 59.729 47.619 0.00 0.00 0.00 1.40
2588 2706 1.555967 AAAGGCACGGCACCAATAAT 58.444 45.000 0.00 0.00 0.00 1.28
2589 2707 1.555967 AAGGCACGGCACCAATAATT 58.444 45.000 0.00 0.00 0.00 1.40
2590 2708 1.555967 AGGCACGGCACCAATAATTT 58.444 45.000 0.00 0.00 0.00 1.82
2591 2709 1.204467 AGGCACGGCACCAATAATTTG 59.796 47.619 0.00 0.00 0.00 2.32
2592 2710 0.998669 GCACGGCACCAATAATTTGC 59.001 50.000 0.00 0.00 35.40 3.68
2593 2711 1.404047 GCACGGCACCAATAATTTGCT 60.404 47.619 0.00 0.00 36.46 3.91
2594 2712 2.930455 GCACGGCACCAATAATTTGCTT 60.930 45.455 0.00 0.00 36.46 3.91
2595 2713 2.923020 CACGGCACCAATAATTTGCTTC 59.077 45.455 0.00 0.00 36.46 3.86
2596 2714 2.184448 CGGCACCAATAATTTGCTTCG 58.816 47.619 0.00 0.00 36.46 3.79
2597 2715 2.159448 CGGCACCAATAATTTGCTTCGA 60.159 45.455 0.00 0.00 36.46 3.71
2598 2716 3.671971 CGGCACCAATAATTTGCTTCGAA 60.672 43.478 0.00 0.00 36.46 3.71
2599 2717 3.859386 GGCACCAATAATTTGCTTCGAAG 59.141 43.478 21.02 21.02 36.46 3.79
2600 2718 4.380444 GGCACCAATAATTTGCTTCGAAGA 60.380 41.667 28.95 8.50 36.46 2.87
2601 2719 5.160641 GCACCAATAATTTGCTTCGAAGAA 58.839 37.500 28.95 16.67 45.90 2.52
2602 2720 5.807011 GCACCAATAATTTGCTTCGAAGAAT 59.193 36.000 28.95 16.68 45.90 2.40
2603 2721 6.311200 GCACCAATAATTTGCTTCGAAGAATT 59.689 34.615 28.95 24.46 45.90 2.17
2604 2722 7.463251 GCACCAATAATTTGCTTCGAAGAATTC 60.463 37.037 28.95 11.24 45.90 2.17
2605 2723 7.009540 CACCAATAATTTGCTTCGAAGAATTCC 59.990 37.037 28.95 10.86 43.81 3.01
2606 2724 7.093771 ACCAATAATTTGCTTCGAAGAATTCCT 60.094 33.333 28.95 13.32 43.81 3.36
2607 2725 7.221452 CCAATAATTTGCTTCGAAGAATTCCTG 59.779 37.037 28.95 20.98 43.81 3.86
2608 2726 4.708726 ATTTGCTTCGAAGAATTCCTGG 57.291 40.909 28.95 0.00 43.81 4.45
2609 2727 2.859165 TGCTTCGAAGAATTCCTGGT 57.141 45.000 28.95 0.00 43.81 4.00
2610 2728 2.426522 TGCTTCGAAGAATTCCTGGTG 58.573 47.619 28.95 0.00 43.81 4.17
2611 2729 2.224523 TGCTTCGAAGAATTCCTGGTGT 60.225 45.455 28.95 0.00 43.81 4.16
2612 2730 2.416893 GCTTCGAAGAATTCCTGGTGTC 59.583 50.000 28.95 2.12 43.81 3.67
2613 2731 3.664107 CTTCGAAGAATTCCTGGTGTCA 58.336 45.455 20.74 0.00 43.81 3.58
2614 2732 3.319137 TCGAAGAATTCCTGGTGTCAG 57.681 47.619 0.65 0.00 43.81 3.51
2615 2733 2.897326 TCGAAGAATTCCTGGTGTCAGA 59.103 45.455 0.65 0.00 43.81 3.27
2616 2734 3.515502 TCGAAGAATTCCTGGTGTCAGAT 59.484 43.478 0.65 0.00 43.81 2.90
2617 2735 3.868077 CGAAGAATTCCTGGTGTCAGATC 59.132 47.826 0.65 0.00 43.81 2.75
2618 2736 3.533606 AGAATTCCTGGTGTCAGATCG 57.466 47.619 0.65 0.00 43.49 3.69
2619 2737 3.099905 AGAATTCCTGGTGTCAGATCGA 58.900 45.455 0.65 0.00 43.49 3.59
2620 2738 2.969628 ATTCCTGGTGTCAGATCGAC 57.030 50.000 9.77 9.77 43.49 4.20
2627 2745 2.413765 GTCAGATCGACGGGAGGC 59.586 66.667 0.00 0.00 34.19 4.70
2628 2746 2.122167 GTCAGATCGACGGGAGGCT 61.122 63.158 0.00 0.00 34.19 4.58
2629 2747 1.379977 TCAGATCGACGGGAGGCTT 60.380 57.895 0.00 0.00 33.72 4.35
2630 2748 1.227089 CAGATCGACGGGAGGCTTG 60.227 63.158 0.00 0.00 33.72 4.01
2631 2749 2.586357 GATCGACGGGAGGCTTGC 60.586 66.667 0.00 0.00 33.72 4.01
2632 2750 4.162690 ATCGACGGGAGGCTTGCC 62.163 66.667 2.97 2.97 33.72 4.52
2635 2753 3.706373 GACGGGAGGCTTGCCTGA 61.706 66.667 19.84 0.00 35.69 3.86
2636 2754 3.249189 ACGGGAGGCTTGCCTGAA 61.249 61.111 19.84 0.00 35.69 3.02
2637 2755 2.273449 CGGGAGGCTTGCCTGAAT 59.727 61.111 19.84 0.00 33.45 2.57
2638 2756 1.379044 CGGGAGGCTTGCCTGAATT 60.379 57.895 19.84 0.00 33.45 2.17
2639 2757 0.967380 CGGGAGGCTTGCCTGAATTT 60.967 55.000 19.84 0.00 33.45 1.82
2640 2758 1.269958 GGGAGGCTTGCCTGAATTTT 58.730 50.000 19.84 0.00 0.00 1.82
2641 2759 1.205655 GGGAGGCTTGCCTGAATTTTC 59.794 52.381 19.84 2.62 0.00 2.29
2642 2760 1.205655 GGAGGCTTGCCTGAATTTTCC 59.794 52.381 19.84 8.39 0.00 3.13
2643 2761 0.890683 AGGCTTGCCTGAATTTTCCG 59.109 50.000 13.99 0.00 0.00 4.30
2644 2762 0.887933 GGCTTGCCTGAATTTTCCGA 59.112 50.000 4.11 0.00 0.00 4.55
2645 2763 1.478105 GGCTTGCCTGAATTTTCCGAT 59.522 47.619 4.11 0.00 0.00 4.18
2646 2764 2.533266 GCTTGCCTGAATTTTCCGATG 58.467 47.619 0.00 0.00 0.00 3.84
2647 2765 2.094545 GCTTGCCTGAATTTTCCGATGT 60.095 45.455 0.00 0.00 0.00 3.06
2648 2766 3.762779 CTTGCCTGAATTTTCCGATGTC 58.237 45.455 0.00 0.00 0.00 3.06
2649 2767 2.789213 TGCCTGAATTTTCCGATGTCA 58.211 42.857 0.00 0.00 0.00 3.58
2650 2768 2.487762 TGCCTGAATTTTCCGATGTCAC 59.512 45.455 0.00 0.00 0.00 3.67
2651 2769 2.159379 GCCTGAATTTTCCGATGTCACC 60.159 50.000 0.00 0.00 0.00 4.02
2652 2770 2.095853 CCTGAATTTTCCGATGTCACCG 59.904 50.000 0.00 0.00 0.00 4.94
2653 2771 2.742053 CTGAATTTTCCGATGTCACCGT 59.258 45.455 0.00 0.00 0.00 4.83
2654 2772 2.739913 TGAATTTTCCGATGTCACCGTC 59.260 45.455 0.00 0.00 0.00 4.79
2655 2773 1.734163 ATTTTCCGATGTCACCGTCC 58.266 50.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.597227 CGTTCGGAATACAAATAGTTACATTCA 58.403 33.333 9.51 0.00 0.00 2.57
8 9 8.598075 ACGTTCGGAATACAAATAGTTACATTC 58.402 33.333 0.00 1.87 0.00 2.67
9 10 8.483307 ACGTTCGGAATACAAATAGTTACATT 57.517 30.769 0.00 0.00 0.00 2.71
10 11 9.585099 TTACGTTCGGAATACAAATAGTTACAT 57.415 29.630 0.00 0.00 0.00 2.29
11 12 8.978564 TTACGTTCGGAATACAAATAGTTACA 57.021 30.769 0.00 0.00 0.00 2.41
14 15 9.763465 CAAATTACGTTCGGAATACAAATAGTT 57.237 29.630 3.03 0.00 0.00 2.24
15 16 8.938906 ACAAATTACGTTCGGAATACAAATAGT 58.061 29.630 3.03 0.00 0.00 2.12
16 17 9.763465 AACAAATTACGTTCGGAATACAAATAG 57.237 29.630 3.03 0.00 0.00 1.73
20 21 9.544314 CATAAACAAATTACGTTCGGAATACAA 57.456 29.630 3.03 0.00 0.00 2.41
21 22 8.933807 TCATAAACAAATTACGTTCGGAATACA 58.066 29.630 3.03 0.00 0.00 2.29
22 23 9.757859 TTCATAAACAAATTACGTTCGGAATAC 57.242 29.630 3.03 0.00 0.00 1.89
23 24 9.976255 CTTCATAAACAAATTACGTTCGGAATA 57.024 29.630 3.03 0.00 0.00 1.75
24 25 7.483691 GCTTCATAAACAAATTACGTTCGGAAT 59.516 33.333 0.00 0.00 0.00 3.01
25 26 6.797995 GCTTCATAAACAAATTACGTTCGGAA 59.202 34.615 0.00 0.00 0.00 4.30
26 27 6.308675 GCTTCATAAACAAATTACGTTCGGA 58.691 36.000 0.00 0.00 0.00 4.55
27 28 5.224313 CGCTTCATAAACAAATTACGTTCGG 59.776 40.000 0.00 0.00 0.00 4.30
28 29 6.010675 TCGCTTCATAAACAAATTACGTTCG 58.989 36.000 0.00 0.00 0.00 3.95
29 30 6.247791 GGTCGCTTCATAAACAAATTACGTTC 59.752 38.462 0.00 0.00 0.00 3.95
30 31 6.081693 GGTCGCTTCATAAACAAATTACGTT 58.918 36.000 0.00 0.00 0.00 3.99
31 32 5.624292 GGTCGCTTCATAAACAAATTACGT 58.376 37.500 0.00 0.00 0.00 3.57
32 33 4.721977 CGGTCGCTTCATAAACAAATTACG 59.278 41.667 0.00 0.00 0.00 3.18
33 34 5.624292 ACGGTCGCTTCATAAACAAATTAC 58.376 37.500 0.00 0.00 0.00 1.89
34 35 5.866335 ACGGTCGCTTCATAAACAAATTA 57.134 34.783 0.00 0.00 0.00 1.40
35 36 4.759516 ACGGTCGCTTCATAAACAAATT 57.240 36.364 0.00 0.00 0.00 1.82
36 37 5.640357 TCTTACGGTCGCTTCATAAACAAAT 59.360 36.000 0.00 0.00 0.00 2.32
37 38 4.989797 TCTTACGGTCGCTTCATAAACAAA 59.010 37.500 0.00 0.00 0.00 2.83
38 39 4.558178 TCTTACGGTCGCTTCATAAACAA 58.442 39.130 0.00 0.00 0.00 2.83
39 40 4.177165 TCTTACGGTCGCTTCATAAACA 57.823 40.909 0.00 0.00 0.00 2.83
40 41 5.713822 AATCTTACGGTCGCTTCATAAAC 57.286 39.130 0.00 0.00 0.00 2.01
41 42 7.431249 AGATAATCTTACGGTCGCTTCATAAA 58.569 34.615 0.00 0.00 0.00 1.40
42 43 6.978338 AGATAATCTTACGGTCGCTTCATAA 58.022 36.000 0.00 0.00 0.00 1.90
43 44 6.570672 AGATAATCTTACGGTCGCTTCATA 57.429 37.500 0.00 0.00 0.00 2.15
44 45 5.455056 AGATAATCTTACGGTCGCTTCAT 57.545 39.130 0.00 0.00 0.00 2.57
45 46 4.554134 CGAGATAATCTTACGGTCGCTTCA 60.554 45.833 0.00 0.00 0.00 3.02
46 47 3.907194 CGAGATAATCTTACGGTCGCTTC 59.093 47.826 0.00 0.00 0.00 3.86
47 48 3.304525 CCGAGATAATCTTACGGTCGCTT 60.305 47.826 0.00 0.00 38.97 4.68
48 49 2.225963 CCGAGATAATCTTACGGTCGCT 59.774 50.000 0.00 0.00 38.97 4.93
49 50 2.582687 CCGAGATAATCTTACGGTCGC 58.417 52.381 0.00 0.00 38.97 5.19
50 51 2.551459 ACCCGAGATAATCTTACGGTCG 59.449 50.000 0.00 0.00 41.67 4.79
51 52 3.567164 TCACCCGAGATAATCTTACGGTC 59.433 47.826 0.00 0.00 41.67 4.79
52 53 3.559069 TCACCCGAGATAATCTTACGGT 58.441 45.455 0.00 0.00 41.67 4.83
53 54 4.277672 TCTTCACCCGAGATAATCTTACGG 59.722 45.833 0.00 0.00 42.67 4.02
54 55 5.434352 TCTTCACCCGAGATAATCTTACG 57.566 43.478 0.00 0.00 0.00 3.18
55 56 9.194271 GTTATTCTTCACCCGAGATAATCTTAC 57.806 37.037 0.00 0.00 0.00 2.34
56 57 9.144298 AGTTATTCTTCACCCGAGATAATCTTA 57.856 33.333 0.00 0.00 0.00 2.10
57 58 8.024145 AGTTATTCTTCACCCGAGATAATCTT 57.976 34.615 0.00 0.00 0.00 2.40
58 59 7.604657 AGTTATTCTTCACCCGAGATAATCT 57.395 36.000 0.00 0.00 0.00 2.40
59 60 9.930693 ATAAGTTATTCTTCACCCGAGATAATC 57.069 33.333 0.00 0.00 37.56 1.75
61 62 9.760077 GAATAAGTTATTCTTCACCCGAGATAA 57.240 33.333 22.93 0.00 41.00 1.75
75 76 6.016777 CACCCAGGATGCAGAATAAGTTATTC 60.017 42.308 22.80 22.80 39.03 1.75
76 77 5.829924 CACCCAGGATGCAGAATAAGTTATT 59.170 40.000 7.87 7.87 31.97 1.40
77 78 5.132648 TCACCCAGGATGCAGAATAAGTTAT 59.867 40.000 0.00 0.00 31.97 1.89
78 79 4.473196 TCACCCAGGATGCAGAATAAGTTA 59.527 41.667 0.00 0.00 31.97 2.24
79 80 3.266772 TCACCCAGGATGCAGAATAAGTT 59.733 43.478 0.00 0.00 31.97 2.66
80 81 2.846206 TCACCCAGGATGCAGAATAAGT 59.154 45.455 0.00 0.00 31.97 2.24
81 82 3.565764 TCACCCAGGATGCAGAATAAG 57.434 47.619 0.00 0.00 31.97 1.73
82 83 3.459227 TCATCACCCAGGATGCAGAATAA 59.541 43.478 0.00 0.00 43.44 1.40
83 84 3.047857 TCATCACCCAGGATGCAGAATA 58.952 45.455 0.00 0.00 43.44 1.75
84 85 1.848388 TCATCACCCAGGATGCAGAAT 59.152 47.619 0.00 0.00 43.44 2.40
85 86 1.288188 TCATCACCCAGGATGCAGAA 58.712 50.000 0.00 0.00 43.44 3.02
86 87 1.288188 TTCATCACCCAGGATGCAGA 58.712 50.000 0.00 0.00 43.44 4.26
87 88 2.359981 ATTCATCACCCAGGATGCAG 57.640 50.000 0.00 0.00 43.44 4.41
88 89 2.779430 ACTATTCATCACCCAGGATGCA 59.221 45.455 0.00 0.00 43.44 3.96
89 90 3.498774 ACTATTCATCACCCAGGATGC 57.501 47.619 0.00 0.00 43.44 3.91
90 91 7.056635 AGTAAAACTATTCATCACCCAGGATG 58.943 38.462 0.00 0.00 44.78 3.51
91 92 7.213178 AGTAAAACTATTCATCACCCAGGAT 57.787 36.000 0.00 0.00 0.00 3.24
92 93 6.636454 AGTAAAACTATTCATCACCCAGGA 57.364 37.500 0.00 0.00 0.00 3.86
93 94 7.495934 CACTAGTAAAACTATTCATCACCCAGG 59.504 40.741 0.00 0.00 29.08 4.45
94 95 7.011482 GCACTAGTAAAACTATTCATCACCCAG 59.989 40.741 0.00 0.00 29.08 4.45
95 96 6.821665 GCACTAGTAAAACTATTCATCACCCA 59.178 38.462 0.00 0.00 29.08 4.51
96 97 6.821665 TGCACTAGTAAAACTATTCATCACCC 59.178 38.462 0.00 0.00 29.08 4.61
97 98 7.843490 TGCACTAGTAAAACTATTCATCACC 57.157 36.000 0.00 0.00 29.08 4.02
98 99 7.852945 GCATGCACTAGTAAAACTATTCATCAC 59.147 37.037 14.21 0.00 29.08 3.06
99 100 7.254421 CGCATGCACTAGTAAAACTATTCATCA 60.254 37.037 19.57 0.00 29.08 3.07
100 101 7.065894 CGCATGCACTAGTAAAACTATTCATC 58.934 38.462 19.57 0.00 29.08 2.92
101 102 6.017934 CCGCATGCACTAGTAAAACTATTCAT 60.018 38.462 19.57 0.00 29.08 2.57
102 103 5.293324 CCGCATGCACTAGTAAAACTATTCA 59.707 40.000 19.57 0.00 29.08 2.57
103 104 5.522460 TCCGCATGCACTAGTAAAACTATTC 59.478 40.000 19.57 0.00 29.08 1.75
104 105 5.424757 TCCGCATGCACTAGTAAAACTATT 58.575 37.500 19.57 0.00 29.08 1.73
105 106 5.018539 TCCGCATGCACTAGTAAAACTAT 57.981 39.130 19.57 0.00 29.08 2.12
106 107 4.459390 TCCGCATGCACTAGTAAAACTA 57.541 40.909 19.57 0.00 0.00 2.24
107 108 3.328382 TCCGCATGCACTAGTAAAACT 57.672 42.857 19.57 0.00 0.00 2.66
108 109 5.924475 ATATCCGCATGCACTAGTAAAAC 57.076 39.130 19.57 0.00 0.00 2.43
109 110 7.713507 ACTTAATATCCGCATGCACTAGTAAAA 59.286 33.333 19.57 1.85 0.00 1.52
110 111 7.214381 ACTTAATATCCGCATGCACTAGTAAA 58.786 34.615 19.57 3.29 0.00 2.01
111 112 6.755206 ACTTAATATCCGCATGCACTAGTAA 58.245 36.000 19.57 13.12 0.00 2.24
112 113 6.340962 ACTTAATATCCGCATGCACTAGTA 57.659 37.500 19.57 6.39 0.00 1.82
113 114 5.215252 ACTTAATATCCGCATGCACTAGT 57.785 39.130 19.57 7.37 0.00 2.57
114 115 5.807520 CCTACTTAATATCCGCATGCACTAG 59.192 44.000 19.57 2.96 0.00 2.57
115 116 5.479027 TCCTACTTAATATCCGCATGCACTA 59.521 40.000 19.57 5.92 0.00 2.74
116 117 4.283467 TCCTACTTAATATCCGCATGCACT 59.717 41.667 19.57 3.59 0.00 4.40
117 118 4.566004 TCCTACTTAATATCCGCATGCAC 58.434 43.478 19.57 0.00 0.00 4.57
118 119 4.882842 TCCTACTTAATATCCGCATGCA 57.117 40.909 19.57 0.00 0.00 3.96
119 120 9.712305 ATAATATCCTACTTAATATCCGCATGC 57.288 33.333 7.91 7.91 0.00 4.06
142 143 9.658475 GCTAATCACATAATAACACGCAAATAA 57.342 29.630 0.00 0.00 0.00 1.40
143 144 8.831550 TGCTAATCACATAATAACACGCAAATA 58.168 29.630 0.00 0.00 0.00 1.40
144 145 7.643764 GTGCTAATCACATAATAACACGCAAAT 59.356 33.333 0.00 0.00 44.98 2.32
145 146 6.964370 GTGCTAATCACATAATAACACGCAAA 59.036 34.615 0.00 0.00 44.98 3.68
146 147 6.482835 GTGCTAATCACATAATAACACGCAA 58.517 36.000 0.00 0.00 44.98 4.85
147 148 6.043327 GTGCTAATCACATAATAACACGCA 57.957 37.500 0.00 0.00 44.98 5.24
172 173 8.702438 GCGTGCATTTAATTTCATGCTAAATAT 58.298 29.630 17.72 0.00 45.21 1.28
173 174 7.920151 AGCGTGCATTTAATTTCATGCTAAATA 59.080 29.630 16.74 0.78 46.34 1.40
174 175 6.757947 AGCGTGCATTTAATTTCATGCTAAAT 59.242 30.769 16.74 0.11 46.34 1.40
175 176 6.098679 AGCGTGCATTTAATTTCATGCTAAA 58.901 32.000 16.74 0.00 46.34 1.85
176 177 5.649557 AGCGTGCATTTAATTTCATGCTAA 58.350 33.333 16.74 1.90 46.34 3.09
177 178 5.247507 AGCGTGCATTTAATTTCATGCTA 57.752 34.783 16.74 6.42 46.34 3.49
178 179 4.114058 AGCGTGCATTTAATTTCATGCT 57.886 36.364 17.72 14.09 45.21 3.79
179 180 5.947503 TTAGCGTGCATTTAATTTCATGC 57.052 34.783 12.49 12.49 45.20 4.06
180 181 6.394076 CGTTTAGCGTGCATTTAATTTCATG 58.606 36.000 0.00 0.00 35.54 3.07
181 182 6.553255 CGTTTAGCGTGCATTTAATTTCAT 57.447 33.333 0.00 0.00 35.54 2.57
182 183 5.983790 CGTTTAGCGTGCATTTAATTTCA 57.016 34.783 0.00 0.00 35.54 2.69
197 198 0.179248 GAGCGCTCAACACGTTTAGC 60.179 55.000 31.91 6.11 36.68 3.09
198 199 0.091344 CGAGCGCTCAACACGTTTAG 59.909 55.000 34.69 12.34 0.00 1.85
199 200 0.318022 TCGAGCGCTCAACACGTTTA 60.318 50.000 34.69 4.78 0.00 2.01
200 201 1.590525 TCGAGCGCTCAACACGTTT 60.591 52.632 34.69 0.00 0.00 3.60
201 202 2.027024 TCGAGCGCTCAACACGTT 59.973 55.556 34.69 0.00 0.00 3.99
202 203 2.729862 GTCGAGCGCTCAACACGT 60.730 61.111 34.69 0.00 0.00 4.49
203 204 1.617755 AATGTCGAGCGCTCAACACG 61.618 55.000 31.93 20.44 0.00 4.49
204 205 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.000 31.93 24.81 0.00 3.32
205 206 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
206 207 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
207 208 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
208 209 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
209 210 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
210 211 3.479370 GCTTCAATGTCGAGCGCT 58.521 55.556 11.27 11.27 0.00 5.92
213 214 0.737715 AGACCGCTTCAATGTCGAGC 60.738 55.000 0.00 0.00 34.24 5.03
214 215 2.455032 CTAGACCGCTTCAATGTCGAG 58.545 52.381 0.00 0.00 34.24 4.04
215 216 1.134367 CCTAGACCGCTTCAATGTCGA 59.866 52.381 0.00 0.00 34.24 4.20
216 217 1.135083 ACCTAGACCGCTTCAATGTCG 60.135 52.381 0.00 0.00 34.24 4.35
217 218 2.094182 TGACCTAGACCGCTTCAATGTC 60.094 50.000 0.00 0.00 0.00 3.06
218 219 1.899814 TGACCTAGACCGCTTCAATGT 59.100 47.619 0.00 0.00 0.00 2.71
219 220 2.672961 TGACCTAGACCGCTTCAATG 57.327 50.000 0.00 0.00 0.00 2.82
220 221 3.535561 CAATGACCTAGACCGCTTCAAT 58.464 45.455 0.00 0.00 0.00 2.57
221 222 2.354704 CCAATGACCTAGACCGCTTCAA 60.355 50.000 0.00 0.00 0.00 2.69
222 223 1.207089 CCAATGACCTAGACCGCTTCA 59.793 52.381 0.00 0.00 0.00 3.02
223 224 1.480954 TCCAATGACCTAGACCGCTTC 59.519 52.381 0.00 0.00 0.00 3.86
224 225 1.568504 TCCAATGACCTAGACCGCTT 58.431 50.000 0.00 0.00 0.00 4.68
225 226 1.689273 GATCCAATGACCTAGACCGCT 59.311 52.381 0.00 0.00 0.00 5.52
226 227 1.603172 CGATCCAATGACCTAGACCGC 60.603 57.143 0.00 0.00 0.00 5.68
227 228 1.954382 TCGATCCAATGACCTAGACCG 59.046 52.381 0.00 0.00 0.00 4.79
228 229 2.693591 TGTCGATCCAATGACCTAGACC 59.306 50.000 0.00 0.00 34.18 3.85
229 230 4.038042 TCATGTCGATCCAATGACCTAGAC 59.962 45.833 0.00 0.00 34.18 2.59
230 231 4.215109 TCATGTCGATCCAATGACCTAGA 58.785 43.478 0.00 0.00 34.18 2.43
231 232 4.590850 TCATGTCGATCCAATGACCTAG 57.409 45.455 0.00 0.00 34.18 3.02
232 233 5.551305 AATCATGTCGATCCAATGACCTA 57.449 39.130 0.00 0.00 34.18 3.08
233 234 4.428294 AATCATGTCGATCCAATGACCT 57.572 40.909 0.00 0.00 34.18 3.85
234 235 6.618287 TTAAATCATGTCGATCCAATGACC 57.382 37.500 0.00 0.00 34.18 4.02
235 236 7.041167 TCCATTAAATCATGTCGATCCAATGAC 60.041 37.037 0.00 0.00 37.37 3.06
236 237 6.997476 TCCATTAAATCATGTCGATCCAATGA 59.003 34.615 0.00 0.00 37.37 2.57
237 238 7.080099 GTCCATTAAATCATGTCGATCCAATG 58.920 38.462 0.00 0.00 36.19 2.82
238 239 6.073058 CGTCCATTAAATCATGTCGATCCAAT 60.073 38.462 0.00 0.00 31.11 3.16
239 240 5.236263 CGTCCATTAAATCATGTCGATCCAA 59.764 40.000 0.00 0.00 31.11 3.53
240 241 4.749598 CGTCCATTAAATCATGTCGATCCA 59.250 41.667 0.00 0.00 31.11 3.41
241 242 4.988540 TCGTCCATTAAATCATGTCGATCC 59.011 41.667 0.00 0.00 31.11 3.36
242 243 5.920840 TCTCGTCCATTAAATCATGTCGATC 59.079 40.000 0.00 0.00 32.34 3.69
243 244 5.842907 TCTCGTCCATTAAATCATGTCGAT 58.157 37.500 0.00 0.00 32.34 3.59
244 245 5.257082 TCTCGTCCATTAAATCATGTCGA 57.743 39.130 0.00 0.00 32.06 4.20
245 246 6.530913 AATCTCGTCCATTAAATCATGTCG 57.469 37.500 0.00 0.00 0.00 4.35
265 266 7.550712 ACCCAAAAGAGCAGATTCAATTAATC 58.449 34.615 0.00 0.00 43.81 1.75
266 267 7.398332 AGACCCAAAAGAGCAGATTCAATTAAT 59.602 33.333 0.00 0.00 0.00 1.40
267 268 6.721208 AGACCCAAAAGAGCAGATTCAATTAA 59.279 34.615 0.00 0.00 0.00 1.40
268 269 6.248433 AGACCCAAAAGAGCAGATTCAATTA 58.752 36.000 0.00 0.00 0.00 1.40
269 270 5.082425 AGACCCAAAAGAGCAGATTCAATT 58.918 37.500 0.00 0.00 0.00 2.32
270 271 4.670765 AGACCCAAAAGAGCAGATTCAAT 58.329 39.130 0.00 0.00 0.00 2.57
271 272 4.104383 AGACCCAAAAGAGCAGATTCAA 57.896 40.909 0.00 0.00 0.00 2.69
272 273 3.795688 AGACCCAAAAGAGCAGATTCA 57.204 42.857 0.00 0.00 0.00 2.57
273 274 5.459536 AAAAGACCCAAAAGAGCAGATTC 57.540 39.130 0.00 0.00 0.00 2.52
274 275 5.876651 AAAAAGACCCAAAAGAGCAGATT 57.123 34.783 0.00 0.00 0.00 2.40
275 276 8.829373 ATATAAAAAGACCCAAAAGAGCAGAT 57.171 30.769 0.00 0.00 0.00 2.90
276 277 8.522830 CAATATAAAAAGACCCAAAAGAGCAGA 58.477 33.333 0.00 0.00 0.00 4.26
277 278 7.761249 CCAATATAAAAAGACCCAAAAGAGCAG 59.239 37.037 0.00 0.00 0.00 4.24
278 279 7.234577 ACCAATATAAAAAGACCCAAAAGAGCA 59.765 33.333 0.00 0.00 0.00 4.26
279 280 7.545615 CACCAATATAAAAAGACCCAAAAGAGC 59.454 37.037 0.00 0.00 0.00 4.09
280 281 8.585018 ACACCAATATAAAAAGACCCAAAAGAG 58.415 33.333 0.00 0.00 0.00 2.85
281 282 8.485578 ACACCAATATAAAAAGACCCAAAAGA 57.514 30.769 0.00 0.00 0.00 2.52
282 283 9.855021 CTACACCAATATAAAAAGACCCAAAAG 57.145 33.333 0.00 0.00 0.00 2.27
283 284 9.589461 TCTACACCAATATAAAAAGACCCAAAA 57.411 29.630 0.00 0.00 0.00 2.44
284 285 9.762381 ATCTACACCAATATAAAAAGACCCAAA 57.238 29.630 0.00 0.00 0.00 3.28
321 322 5.189539 TGAGGTGTCAAGGACATGATAATGA 59.810 40.000 0.00 0.00 44.63 2.57
348 350 5.266788 TCTTTGAGGATCTGCAAAATGGAT 58.733 37.500 12.33 0.00 34.01 3.41
349 351 4.665451 TCTTTGAGGATCTGCAAAATGGA 58.335 39.130 12.33 6.25 34.01 3.41
350 352 5.395682 TTCTTTGAGGATCTGCAAAATGG 57.604 39.130 12.33 4.60 34.01 3.16
351 353 7.718272 TTTTTCTTTGAGGATCTGCAAAATG 57.282 32.000 12.33 5.10 34.01 2.32
375 377 4.516321 GCTCAACCTGCAAAATGGATTTTT 59.484 37.500 0.00 0.00 37.86 1.94
376 378 4.067192 GCTCAACCTGCAAAATGGATTTT 58.933 39.130 0.00 0.00 40.37 1.82
377 379 3.557686 GGCTCAACCTGCAAAATGGATTT 60.558 43.478 0.00 0.00 34.51 2.17
378 380 2.027837 GGCTCAACCTGCAAAATGGATT 60.028 45.455 0.00 0.00 34.51 3.01
391 393 2.541556 GAGTACTGAATCGGCTCAACC 58.458 52.381 0.00 0.00 0.00 3.77
529 536 3.197983 AGTGGGAGTGGATAAAATGGGA 58.802 45.455 0.00 0.00 0.00 4.37
550 557 4.530946 GTCCGGGATTAGGAAATGGATAGA 59.469 45.833 0.00 0.00 39.84 1.98
567 574 1.918868 GCAGTTTTTAGCCGTCCGGG 61.919 60.000 7.97 0.00 39.58 5.73
568 575 1.500396 GCAGTTTTTAGCCGTCCGG 59.500 57.895 0.24 0.24 38.57 5.14
653 660 2.292794 TACGCAACTCTGGGATCGCC 62.293 60.000 7.38 0.12 38.81 5.54
654 661 1.141019 TACGCAACTCTGGGATCGC 59.859 57.895 2.14 2.14 38.81 4.58
655 662 0.866061 CGTACGCAACTCTGGGATCG 60.866 60.000 0.52 0.00 38.81 3.69
656 663 1.146358 GCGTACGCAACTCTGGGATC 61.146 60.000 33.90 0.00 41.49 3.36
657 664 1.153628 GCGTACGCAACTCTGGGAT 60.154 57.895 33.90 0.00 41.49 3.85
658 665 2.260434 GCGTACGCAACTCTGGGA 59.740 61.111 33.90 0.00 41.49 4.37
659 666 2.813908 GGCGTACGCAACTCTGGG 60.814 66.667 37.99 0.00 44.11 4.45
660 667 2.813908 GGGCGTACGCAACTCTGG 60.814 66.667 37.99 0.00 44.11 3.86
661 668 2.813908 GGGGCGTACGCAACTCTG 60.814 66.667 37.99 0.00 44.11 3.35
767 789 1.134670 CAGTGGATCCTCCTTCGTTCC 60.135 57.143 14.23 0.00 37.46 3.62
768 790 1.740718 GCAGTGGATCCTCCTTCGTTC 60.741 57.143 14.23 0.00 37.46 3.95
769 791 0.250513 GCAGTGGATCCTCCTTCGTT 59.749 55.000 14.23 0.00 37.46 3.85
770 792 1.901085 GCAGTGGATCCTCCTTCGT 59.099 57.895 14.23 0.00 37.46 3.85
771 793 1.227089 CGCAGTGGATCCTCCTTCG 60.227 63.158 14.23 11.04 37.46 3.79
772 794 1.522580 GCGCAGTGGATCCTCCTTC 60.523 63.158 14.23 2.57 37.46 3.46
773 795 2.586792 GCGCAGTGGATCCTCCTT 59.413 61.111 14.23 0.00 37.46 3.36
774 796 3.474570 GGCGCAGTGGATCCTCCT 61.475 66.667 14.23 5.98 37.46 3.69
775 797 3.474570 AGGCGCAGTGGATCCTCC 61.475 66.667 14.23 3.45 36.96 4.30
776 798 2.202987 CAGGCGCAGTGGATCCTC 60.203 66.667 14.23 9.81 0.00 3.71
777 799 4.479993 GCAGGCGCAGTGGATCCT 62.480 66.667 14.23 0.00 38.36 3.24
820 842 6.469410 ACTGATTATTACCTTTGGTGTCGAA 58.531 36.000 0.00 0.00 36.19 3.71
829 851 6.162241 AGGGGATGGAACTGATTATTACCTTT 59.838 38.462 0.00 0.00 0.00 3.11
844 866 2.204448 AGGGGCAAGGGGATGGAA 60.204 61.111 0.00 0.00 0.00 3.53
865 901 2.357034 GCGTGTTCTTGGCCGAGA 60.357 61.111 19.55 19.55 0.00 4.04
912 948 7.793948 TCATACAATCATGATCATCTCCTCT 57.206 36.000 9.06 0.00 29.93 3.69
915 951 6.648310 ACGTTCATACAATCATGATCATCTCC 59.352 38.462 9.06 0.00 34.95 3.71
920 956 4.273235 GCCACGTTCATACAATCATGATCA 59.727 41.667 9.06 0.00 34.95 2.92
924 960 3.002656 GGAGCCACGTTCATACAATCATG 59.997 47.826 0.00 0.00 0.00 3.07
964 1011 1.797537 GATCAAACCTGCGCGTTGC 60.798 57.895 8.43 0.00 46.70 4.17
965 1012 1.509787 CGATCAAACCTGCGCGTTG 60.510 57.895 8.43 3.71 0.00 4.10
966 1013 2.677003 CCGATCAAACCTGCGCGTT 61.677 57.895 8.43 0.00 0.00 4.84
967 1014 2.852495 ATCCGATCAAACCTGCGCGT 62.852 55.000 8.43 0.00 0.00 6.01
993 1040 4.496336 AGAAGCCCCATGGAGCGC 62.496 66.667 15.22 11.83 0.00 5.92
994 1041 2.117156 CAAGAAGCCCCATGGAGCG 61.117 63.158 15.22 0.65 0.00 5.03
1273 1323 4.033709 AGGTGTGATAAGATACCTGTGCT 58.966 43.478 0.00 0.00 41.76 4.40
1475 1546 3.454587 AAGCCAACGCACCAGTCGA 62.455 57.895 0.00 0.00 37.52 4.20
1526 1597 3.842126 CGTGATGTGGTGCGCTCG 61.842 66.667 9.73 0.00 0.00 5.03
1530 1601 2.677003 GGGTTCGTGATGTGGTGCG 61.677 63.158 0.00 0.00 0.00 5.34
1542 1613 2.917933 TGGATCTAGCATTTGGGTTCG 58.082 47.619 0.00 0.00 0.00 3.95
1615 1690 0.179020 CACCACCCTGCAAGAGACAA 60.179 55.000 0.00 0.00 34.07 3.18
1619 1694 0.325933 TGATCACCACCCTGCAAGAG 59.674 55.000 0.00 0.00 34.07 2.85
1623 1698 0.036732 GAACTGATCACCACCCTGCA 59.963 55.000 0.00 0.00 0.00 4.41
1671 1749 1.938585 TCTCCGTCTTGGTGGATCTT 58.061 50.000 0.00 0.00 39.52 2.40
1777 1864 6.910536 TTACAGCGGAAGTAGTACTAGTAC 57.089 41.667 23.03 23.03 36.35 2.73
1795 1882 2.736721 CACGTGGAGTGGATGTTTACAG 59.263 50.000 7.95 0.00 46.77 2.74
1882 1983 0.321830 GCCGGTTGCCTACTACCAAA 60.322 55.000 1.90 0.00 41.25 3.28
2085 2190 3.209410 CAATAATCACAGGAGTGGAGGC 58.791 50.000 0.00 0.00 45.91 4.70
2113 2218 2.663196 CGACCAACCAGGGAGGAC 59.337 66.667 6.45 0.00 43.89 3.85
2122 2227 0.035739 TTCAACTAGCCCGACCAACC 59.964 55.000 0.00 0.00 0.00 3.77
2129 2234 1.401905 GCCATTTCTTCAACTAGCCCG 59.598 52.381 0.00 0.00 0.00 6.13
2171 2276 0.757561 TCTGACACCACCCTCGAACA 60.758 55.000 0.00 0.00 0.00 3.18
2207 2312 2.810439 ACAGAGAAGACTGAGCACAC 57.190 50.000 0.00 0.00 40.63 3.82
2215 2320 3.245193 ACCCTAACCGTACAGAGAAGACT 60.245 47.826 0.00 0.00 0.00 3.24
2246 2351 0.690192 TCAAATCGTCAAGAGGCCCA 59.310 50.000 0.00 0.00 0.00 5.36
2260 2365 1.909302 ACACCCTCCGATCTGTCAAAT 59.091 47.619 0.00 0.00 0.00 2.32
2278 2383 3.756963 AGTCAGTATCACGAGCAAGTACA 59.243 43.478 0.00 0.00 0.00 2.90
2329 2439 7.251994 GCTCAACGATCGATAAATATCCTAGT 58.748 38.462 24.34 0.00 0.00 2.57
2356 2466 5.746990 TTCCTTGAAAACCTTCACCAAAA 57.253 34.783 0.00 0.00 41.34 2.44
2385 2499 2.724977 TACACTCGTCAAGCTCCTTG 57.275 50.000 0.00 0.00 42.25 3.61
2387 2501 2.675317 GCATTACACTCGTCAAGCTCCT 60.675 50.000 0.00 0.00 0.00 3.69
2426 2544 5.312895 TGTTTTAGAAAGACCATGCTGCTA 58.687 37.500 0.00 0.00 0.00 3.49
2473 2591 7.995488 AGAGATTCACCTTTTCTCTCTCAAAAA 59.005 33.333 0.00 0.00 41.82 1.94
2474 2592 7.443575 CAGAGATTCACCTTTTCTCTCTCAAAA 59.556 37.037 0.00 0.00 43.28 2.44
2475 2593 6.933521 CAGAGATTCACCTTTTCTCTCTCAAA 59.066 38.462 0.00 0.00 43.28 2.69
2476 2594 6.462500 CAGAGATTCACCTTTTCTCTCTCAA 58.538 40.000 0.00 0.00 43.28 3.02
2477 2595 5.046735 CCAGAGATTCACCTTTTCTCTCTCA 60.047 44.000 0.00 0.00 43.28 3.27
2478 2596 5.046663 ACCAGAGATTCACCTTTTCTCTCTC 60.047 44.000 0.00 0.00 43.28 3.20
2479 2597 4.843516 ACCAGAGATTCACCTTTTCTCTCT 59.156 41.667 0.00 0.00 43.28 3.10
2480 2598 4.934602 CACCAGAGATTCACCTTTTCTCTC 59.065 45.833 0.00 0.00 43.28 3.20
2481 2599 4.594920 TCACCAGAGATTCACCTTTTCTCT 59.405 41.667 0.00 0.00 45.41 3.10
2482 2600 4.899502 TCACCAGAGATTCACCTTTTCTC 58.100 43.478 0.00 0.00 36.88 2.87
2483 2601 4.805609 GCTCACCAGAGATTCACCTTTTCT 60.806 45.833 0.00 0.00 44.98 2.52
2484 2602 3.438434 GCTCACCAGAGATTCACCTTTTC 59.562 47.826 0.00 0.00 44.98 2.29
2485 2603 3.416156 GCTCACCAGAGATTCACCTTTT 58.584 45.455 0.00 0.00 44.98 2.27
2486 2604 2.290577 GGCTCACCAGAGATTCACCTTT 60.291 50.000 0.00 0.00 44.98 3.11
2487 2605 1.280421 GGCTCACCAGAGATTCACCTT 59.720 52.381 0.00 0.00 44.98 3.50
2488 2606 0.908198 GGCTCACCAGAGATTCACCT 59.092 55.000 0.00 0.00 44.98 4.00
2489 2607 0.615331 TGGCTCACCAGAGATTCACC 59.385 55.000 0.00 0.00 44.98 4.02
2499 2617 0.252421 ATCAGAGGAGTGGCTCACCA 60.252 55.000 5.84 0.00 46.51 4.17
2500 2618 1.686052 CTATCAGAGGAGTGGCTCACC 59.314 57.143 2.18 0.00 34.49 4.02
2501 2619 2.660572 TCTATCAGAGGAGTGGCTCAC 58.339 52.381 0.00 0.00 31.08 3.51
2502 2620 3.609256 ATCTATCAGAGGAGTGGCTCA 57.391 47.619 0.00 0.00 31.08 4.26
2503 2621 6.014669 ACAATAATCTATCAGAGGAGTGGCTC 60.015 42.308 0.00 0.00 0.00 4.70
2504 2622 5.843421 ACAATAATCTATCAGAGGAGTGGCT 59.157 40.000 0.00 0.00 0.00 4.75
2505 2623 6.107901 ACAATAATCTATCAGAGGAGTGGC 57.892 41.667 0.00 0.00 0.00 5.01
2506 2624 8.310382 CCTTACAATAATCTATCAGAGGAGTGG 58.690 40.741 0.00 0.00 0.00 4.00
2507 2625 8.865090 ACCTTACAATAATCTATCAGAGGAGTG 58.135 37.037 0.00 0.00 0.00 3.51
2519 2637 8.980832 AGAGGATGGATACCTTACAATAATCT 57.019 34.615 0.00 0.00 37.93 2.40
2520 2638 9.660180 GAAGAGGATGGATACCTTACAATAATC 57.340 37.037 0.00 0.00 37.93 1.75
2521 2639 9.398921 AGAAGAGGATGGATACCTTACAATAAT 57.601 33.333 0.00 0.00 37.93 1.28
2522 2640 8.798975 AGAAGAGGATGGATACCTTACAATAA 57.201 34.615 0.00 0.00 37.93 1.40
2523 2641 8.651389 CAAGAAGAGGATGGATACCTTACAATA 58.349 37.037 0.00 0.00 37.93 1.90
2524 2642 7.512992 CAAGAAGAGGATGGATACCTTACAAT 58.487 38.462 0.00 0.00 37.93 2.71
2525 2643 6.632672 GCAAGAAGAGGATGGATACCTTACAA 60.633 42.308 0.00 0.00 37.93 2.41
2526 2644 5.163301 GCAAGAAGAGGATGGATACCTTACA 60.163 44.000 0.00 0.00 37.93 2.41
2527 2645 5.071115 AGCAAGAAGAGGATGGATACCTTAC 59.929 44.000 0.00 0.00 37.93 2.34
2528 2646 5.219739 AGCAAGAAGAGGATGGATACCTTA 58.780 41.667 0.00 0.00 37.93 2.69
2529 2647 4.043596 AGCAAGAAGAGGATGGATACCTT 58.956 43.478 0.00 0.00 37.93 3.50
2530 2648 3.663198 AGCAAGAAGAGGATGGATACCT 58.337 45.455 0.00 0.00 40.80 3.08
2531 2649 4.429854 AAGCAAGAAGAGGATGGATACC 57.570 45.455 0.00 0.00 0.00 2.73
2532 2650 5.512232 CCCTAAGCAAGAAGAGGATGGATAC 60.512 48.000 0.00 0.00 0.00 2.24
2533 2651 4.594920 CCCTAAGCAAGAAGAGGATGGATA 59.405 45.833 0.00 0.00 0.00 2.59
2534 2652 3.393941 CCCTAAGCAAGAAGAGGATGGAT 59.606 47.826 0.00 0.00 0.00 3.41
2535 2653 2.774234 CCCTAAGCAAGAAGAGGATGGA 59.226 50.000 0.00 0.00 0.00 3.41
2536 2654 2.747799 GCCCTAAGCAAGAAGAGGATGG 60.748 54.545 0.00 0.00 42.97 3.51
2537 2655 2.570135 GCCCTAAGCAAGAAGAGGATG 58.430 52.381 0.00 0.00 42.97 3.51
2549 2667 0.905357 TCTCTGAACCAGCCCTAAGC 59.095 55.000 0.00 0.00 44.25 3.09
2550 2668 3.703001 TTTCTCTGAACCAGCCCTAAG 57.297 47.619 0.00 0.00 0.00 2.18
2551 2669 3.244911 CCTTTTCTCTGAACCAGCCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
2552 2670 2.305927 CCTTTTCTCTGAACCAGCCCTA 59.694 50.000 0.00 0.00 0.00 3.53
2553 2671 1.074566 CCTTTTCTCTGAACCAGCCCT 59.925 52.381 0.00 0.00 0.00 5.19
2554 2672 1.539157 CCTTTTCTCTGAACCAGCCC 58.461 55.000 0.00 0.00 0.00 5.19
2555 2673 0.884514 GCCTTTTCTCTGAACCAGCC 59.115 55.000 0.00 0.00 0.00 4.85
2556 2674 1.268079 GTGCCTTTTCTCTGAACCAGC 59.732 52.381 0.00 0.00 0.00 4.85
2557 2675 1.532868 CGTGCCTTTTCTCTGAACCAG 59.467 52.381 0.00 0.00 0.00 4.00
2558 2676 1.593196 CGTGCCTTTTCTCTGAACCA 58.407 50.000 0.00 0.00 0.00 3.67
2559 2677 0.875059 CCGTGCCTTTTCTCTGAACC 59.125 55.000 0.00 0.00 0.00 3.62
2560 2678 0.238553 GCCGTGCCTTTTCTCTGAAC 59.761 55.000 0.00 0.00 0.00 3.18
2561 2679 0.179032 TGCCGTGCCTTTTCTCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
2562 2680 0.884704 GTGCCGTGCCTTTTCTCTGA 60.885 55.000 0.00 0.00 0.00 3.27
2563 2681 1.576421 GTGCCGTGCCTTTTCTCTG 59.424 57.895 0.00 0.00 0.00 3.35
2564 2682 1.600916 GGTGCCGTGCCTTTTCTCT 60.601 57.895 0.00 0.00 0.00 3.10
2565 2683 1.452145 TTGGTGCCGTGCCTTTTCTC 61.452 55.000 0.00 0.00 0.00 2.87
2566 2684 0.827507 ATTGGTGCCGTGCCTTTTCT 60.828 50.000 0.00 0.00 0.00 2.52
2567 2685 0.885196 TATTGGTGCCGTGCCTTTTC 59.115 50.000 0.00 0.00 0.00 2.29
2568 2686 1.333177 TTATTGGTGCCGTGCCTTTT 58.667 45.000 0.00 0.00 0.00 2.27
2569 2687 1.555967 ATTATTGGTGCCGTGCCTTT 58.444 45.000 0.00 0.00 0.00 3.11
2570 2688 1.555967 AATTATTGGTGCCGTGCCTT 58.444 45.000 0.00 0.00 0.00 4.35
2571 2689 1.204467 CAAATTATTGGTGCCGTGCCT 59.796 47.619 0.00 0.00 32.69 4.75
2572 2690 1.639280 CAAATTATTGGTGCCGTGCC 58.361 50.000 0.00 0.00 32.69 5.01
2573 2691 0.998669 GCAAATTATTGGTGCCGTGC 59.001 50.000 0.00 0.00 37.02 5.34
2574 2692 2.652941 AGCAAATTATTGGTGCCGTG 57.347 45.000 0.00 0.00 45.12 4.94
2575 2693 2.415357 CGAAGCAAATTATTGGTGCCGT 60.415 45.455 0.00 0.00 46.06 5.68
2576 2694 2.159448 TCGAAGCAAATTATTGGTGCCG 60.159 45.455 0.00 8.49 46.06 5.69
2577 2695 3.502191 TCGAAGCAAATTATTGGTGCC 57.498 42.857 0.00 0.00 46.06 5.01
2578 2696 4.732784 TCTTCGAAGCAAATTATTGGTGC 58.267 39.130 20.56 0.00 46.06 5.01
2579 2697 7.009540 GGAATTCTTCGAAGCAAATTATTGGTG 59.990 37.037 20.56 0.00 46.06 4.17
2581 2699 7.221452 CAGGAATTCTTCGAAGCAAATTATTGG 59.779 37.037 20.56 8.62 37.02 3.16
2582 2700 7.221452 CCAGGAATTCTTCGAAGCAAATTATTG 59.779 37.037 20.56 18.64 39.65 1.90
2583 2701 7.093771 ACCAGGAATTCTTCGAAGCAAATTATT 60.094 33.333 20.56 11.43 0.00 1.40
2584 2702 6.378280 ACCAGGAATTCTTCGAAGCAAATTAT 59.622 34.615 20.56 10.80 0.00 1.28
2585 2703 5.710099 ACCAGGAATTCTTCGAAGCAAATTA 59.290 36.000 20.56 0.00 0.00 1.40
2586 2704 4.524328 ACCAGGAATTCTTCGAAGCAAATT 59.476 37.500 20.56 19.81 0.00 1.82
2587 2705 4.082125 ACCAGGAATTCTTCGAAGCAAAT 58.918 39.130 20.56 12.71 0.00 2.32
2588 2706 3.253188 CACCAGGAATTCTTCGAAGCAAA 59.747 43.478 20.56 10.87 0.00 3.68
2589 2707 2.813754 CACCAGGAATTCTTCGAAGCAA 59.186 45.455 20.56 14.94 0.00 3.91
2590 2708 2.224523 ACACCAGGAATTCTTCGAAGCA 60.225 45.455 20.56 10.50 0.00 3.91
2591 2709 2.416893 GACACCAGGAATTCTTCGAAGC 59.583 50.000 20.56 6.14 0.00 3.86
2592 2710 3.664107 TGACACCAGGAATTCTTCGAAG 58.336 45.455 19.35 19.35 0.00 3.79
2593 2711 3.323691 TCTGACACCAGGAATTCTTCGAA 59.676 43.478 5.23 0.00 40.76 3.71
2594 2712 2.897326 TCTGACACCAGGAATTCTTCGA 59.103 45.455 5.23 0.00 40.76 3.71
2595 2713 3.319137 TCTGACACCAGGAATTCTTCG 57.681 47.619 5.23 0.00 40.76 3.79
2596 2714 3.868077 CGATCTGACACCAGGAATTCTTC 59.132 47.826 5.23 0.00 40.76 2.87
2597 2715 3.515502 TCGATCTGACACCAGGAATTCTT 59.484 43.478 5.23 0.00 40.76 2.52
2598 2716 3.099905 TCGATCTGACACCAGGAATTCT 58.900 45.455 5.23 0.00 40.76 2.40
2599 2717 3.526931 TCGATCTGACACCAGGAATTC 57.473 47.619 0.00 0.00 40.76 2.17
2610 2728 1.668101 AAGCCTCCCGTCGATCTGAC 61.668 60.000 0.00 7.40 44.53 3.51
2611 2729 1.379977 AAGCCTCCCGTCGATCTGA 60.380 57.895 0.00 0.00 0.00 3.27
2612 2730 1.227089 CAAGCCTCCCGTCGATCTG 60.227 63.158 0.00 0.00 0.00 2.90
2613 2731 3.082579 GCAAGCCTCCCGTCGATCT 62.083 63.158 0.00 0.00 0.00 2.75
2614 2732 2.586357 GCAAGCCTCCCGTCGATC 60.586 66.667 0.00 0.00 0.00 3.69
2615 2733 4.162690 GGCAAGCCTCCCGTCGAT 62.163 66.667 3.29 0.00 0.00 3.59
2618 2736 2.543067 ATTCAGGCAAGCCTCCCGTC 62.543 60.000 11.38 0.00 46.28 4.79
2619 2737 2.142292 AATTCAGGCAAGCCTCCCGT 62.142 55.000 11.38 0.00 46.28 5.28
2620 2738 0.967380 AAATTCAGGCAAGCCTCCCG 60.967 55.000 11.38 0.14 46.28 5.14
2621 2739 1.205655 GAAAATTCAGGCAAGCCTCCC 59.794 52.381 11.38 0.00 46.28 4.30
2622 2740 1.205655 GGAAAATTCAGGCAAGCCTCC 59.794 52.381 11.38 4.04 46.28 4.30
2623 2741 1.135286 CGGAAAATTCAGGCAAGCCTC 60.135 52.381 11.38 0.00 46.28 4.70
2625 2743 0.887933 TCGGAAAATTCAGGCAAGCC 59.112 50.000 2.02 2.02 0.00 4.35
2626 2744 2.094545 ACATCGGAAAATTCAGGCAAGC 60.095 45.455 0.00 0.00 0.00 4.01
2627 2745 3.191162 TGACATCGGAAAATTCAGGCAAG 59.809 43.478 0.00 0.00 0.00 4.01
2628 2746 3.057596 GTGACATCGGAAAATTCAGGCAA 60.058 43.478 0.00 0.00 0.00 4.52
2629 2747 2.487762 GTGACATCGGAAAATTCAGGCA 59.512 45.455 0.00 0.00 0.00 4.75
2630 2748 2.159379 GGTGACATCGGAAAATTCAGGC 60.159 50.000 0.00 0.00 0.00 4.85
2631 2749 2.095853 CGGTGACATCGGAAAATTCAGG 59.904 50.000 0.00 0.00 0.00 3.86
2632 2750 2.742053 ACGGTGACATCGGAAAATTCAG 59.258 45.455 13.58 0.00 0.00 3.02
2633 2751 2.739913 GACGGTGACATCGGAAAATTCA 59.260 45.455 13.58 0.00 0.00 2.57
2634 2752 2.095372 GGACGGTGACATCGGAAAATTC 59.905 50.000 13.58 0.00 0.00 2.17
2635 2753 2.081462 GGACGGTGACATCGGAAAATT 58.919 47.619 13.58 0.00 0.00 1.82
2636 2754 1.734163 GGACGGTGACATCGGAAAAT 58.266 50.000 13.58 0.00 0.00 1.82
2637 2755 3.220447 GGACGGTGACATCGGAAAA 57.780 52.632 13.58 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.