AutoCloner

Multiple sequence alignment - TraesCS5D01G221400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G221400	chr5D	100.000	2117	0	0	1	2117	329162072	329164188	0.000000e+00	3910
1	TraesCS5D01G221400	chr5D	97.422	2056	45	8	67	2117	6201320	6199268	0.000000e+00	3496
2	TraesCS5D01G221400	chr5D	97.977	1928	34	5	194	2117	560872556	560874482	0.000000e+00	3339
3	TraesCS5D01G221400	chr5D	100.000	64	0	0	1	64	503297796	503297733	3.690000e-23	119
4	TraesCS5D01G221400	chr1D	97.568	2056	44	6	67	2117	254497958	254500012	0.000000e+00	3515
5	TraesCS5D01G221400	chr1D	92.663	2058	101	31	67	2117	244484088	244482074	0.000000e+00	2918
6	TraesCS5D01G221400	chr1D	100.000	64	0	0	1	64	51866053	51866116	3.690000e-23	119
7	TraesCS5D01G221400	chr1D	100.000	64	0	0	1	64	68406887	68406950	3.690000e-23	119
8	TraesCS5D01G221400	chr1D	100.000	64	0	0	1	64	298346845	298346908	3.690000e-23	119
9	TraesCS5D01G221400	chr1D	98.438	64	1	0	1	64	254440932	254440869	1.720000e-21	113
10	TraesCS5D01G221400	chr4D	96.107	2055	72	8	67	2117	19916456	19918506	0.000000e+00	3345
11	TraesCS5D01G221400	chr4D	100.000	64	0	0	1	64	19874400	19874337	3.690000e-23	119
12	TraesCS5D01G221400	chr4D	98.438	64	1	0	1	64	207041155	207041218	1.720000e-21	113
13	TraesCS5D01G221400	chr1A	96.154	2054	68	9	67	2117	168450604	168448559	0.000000e+00	3345
14	TraesCS5D01G221400	chr7A	94.309	2056	108	9	67	2117	352194063	352192012	0.000000e+00	3140
15	TraesCS5D01G221400	chr6B	96.708	1519	46	4	67	1583	22425905	22427421	0.000000e+00	2525
16	TraesCS5D01G221400	chr3D	97.931	1160	24	0	67	1226	21904588	21905747	0.000000e+00	2010
17	TraesCS5D01G221400	chr3B	97.222	1116	24	7	1007	2117	201515580	201516693	0.000000e+00	1882
18	TraesCS5D01G221400	chr3B	95.161	496	22	2	1623	2117	524777564	524777070	0.000000e+00	782
19	TraesCS5D01G221400	chr7B	94.589	499	24	3	1622	2117	102632114	102631616	0.000000e+00	769
20	TraesCS5D01G221400	chr7D	98.656	372	4	1	1588	1958	231542486	231542115	0.000000e+00	658
21	TraesCS5D01G221400	chr2A	98.671	301	4	0	1495	1795	677892870	677893170	3.090000e-148	534
22	TraesCS5D01G221400	chr6A	100.000	64	0	0	1	64	596155750	596155813	3.690000e-23	119
23	TraesCS5D01G221400	chr4B	100.000	64	0	0	1	64	308673878	308673941	3.690000e-23	119

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G221400	chr5D	329162072	329164188	2116	False	3910	3910	100.000	1	2117	1	chr5D.!!$F1	2116
1	TraesCS5D01G221400	chr5D	6199268	6201320	2052	True	3496	3496	97.422	67	2117	1	chr5D.!!$R1	2050
2	TraesCS5D01G221400	chr5D	560872556	560874482	1926	False	3339	3339	97.977	194	2117	1	chr5D.!!$F2	1923
3	TraesCS5D01G221400	chr1D	254497958	254500012	2054	False	3515	3515	97.568	67	2117	1	chr1D.!!$F3	2050
4	TraesCS5D01G221400	chr1D	244482074	244484088	2014	True	2918	2918	92.663	67	2117	1	chr1D.!!$R1	2050
5	TraesCS5D01G221400	chr4D	19916456	19918506	2050	False	3345	3345	96.107	67	2117	1	chr4D.!!$F1	2050
6	TraesCS5D01G221400	chr1A	168448559	168450604	2045	True	3345	3345	96.154	67	2117	1	chr1A.!!$R1	2050
7	TraesCS5D01G221400	chr7A	352192012	352194063	2051	True	3140	3140	94.309	67	2117	1	chr7A.!!$R1	2050
8	TraesCS5D01G221400	chr6B	22425905	22427421	1516	False	2525	2525	96.708	67	1583	1	chr6B.!!$F1	1516
9	TraesCS5D01G221400	chr3D	21904588	21905747	1159	False	2010	2010	97.931	67	1226	1	chr3D.!!$F1	1159
10	TraesCS5D01G221400	chr3B	201515580	201516693	1113	False	1882	1882	97.222	1007	2117	1	chr3B.!!$F1	1110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
62	63	0.25589	GGGTAGGGCTTGCATTCTGA	59.744	55.0	0.0	0.0	0.0	3.27	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1583	1587	4.322101	CGTCCAGTAAAACGGAAGAATG	57.678	45.455	0.0	0.0	33.13	2.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	5.528600	TGTAATCCCATGGAGAGGAAAAA	57.471	39.130	15.22	0.00	34.05	1.94
23	24	5.509498	TGTAATCCCATGGAGAGGAAAAAG	58.491	41.667	15.22	0.00	34.05	2.27
24	25	3.677156	ATCCCATGGAGAGGAAAAAGG	57.323	47.619	15.22	0.00	34.05	3.11
25	26	1.640670	TCCCATGGAGAGGAAAAAGGG	59.359	52.381	15.22	0.00	36.38	3.95
26	27	1.342374	CCCATGGAGAGGAAAAAGGGG	60.342	57.143	15.22	0.00	0.00	4.79
27	28	1.359130	CCATGGAGAGGAAAAAGGGGT	59.641	52.381	5.56	0.00	0.00	4.95
28	29	2.580783	CCATGGAGAGGAAAAAGGGGTA	59.419	50.000	5.56	0.00	0.00	3.69
29	30	3.205282	CCATGGAGAGGAAAAAGGGGTAT	59.795	47.826	5.56	0.00	0.00	2.73
30	31	4.464947	CATGGAGAGGAAAAAGGGGTATC	58.535	47.826	0.00	0.00	0.00	2.24
31	32	3.815507	TGGAGAGGAAAAAGGGGTATCT	58.184	45.455	0.00	0.00	0.00	1.98
32	33	4.183916	TGGAGAGGAAAAAGGGGTATCTT	58.816	43.478	0.00	0.00	0.00	2.40
33	34	4.018415	TGGAGAGGAAAAAGGGGTATCTTG	60.018	45.833	0.00	0.00	0.00	3.02
34	35	4.018324	GGAGAGGAAAAAGGGGTATCTTGT	60.018	45.833	0.00	0.00	0.00	3.16
35	36	5.191124	GGAGAGGAAAAAGGGGTATCTTGTA	59.809	44.000	0.00	0.00	0.00	2.41
36	37	6.296836	GGAGAGGAAAAAGGGGTATCTTGTAA	60.297	42.308	0.00	0.00	0.00	2.41
37	38	7.098845	AGAGGAAAAAGGGGTATCTTGTAAA	57.901	36.000	0.00	0.00	0.00	2.01
38	39	7.709601	AGAGGAAAAAGGGGTATCTTGTAAAT	58.290	34.615	0.00	0.00	0.00	1.40
39	40	8.177456	AGAGGAAAAAGGGGTATCTTGTAAATT	58.823	33.333	0.00	0.00	0.00	1.82
40	41	8.362464	AGGAAAAAGGGGTATCTTGTAAATTC	57.638	34.615	0.00	0.00	0.00	2.17
41	42	7.953493	AGGAAAAAGGGGTATCTTGTAAATTCA	59.047	33.333	0.00	0.00	0.00	2.57
42	43	8.590204	GGAAAAAGGGGTATCTTGTAAATTCAA	58.410	33.333	0.00	0.00	0.00	2.69
43	44	9.639601	GAAAAAGGGGTATCTTGTAAATTCAAG	57.360	33.333	1.36	1.36	44.08	3.02
44	45	7.718334	AAAGGGGTATCTTGTAAATTCAAGG	57.282	36.000	6.96	0.00	43.25	3.61
45	46	5.766590	AGGGGTATCTTGTAAATTCAAGGG	58.233	41.667	6.96	0.00	43.25	3.95
46	47	5.255443	AGGGGTATCTTGTAAATTCAAGGGT	59.745	40.000	6.96	1.05	43.25	4.34
47	48	6.449041	AGGGGTATCTTGTAAATTCAAGGGTA	59.551	38.462	6.96	0.31	43.25	3.69
48	49	6.771267	GGGGTATCTTGTAAATTCAAGGGTAG	59.229	42.308	6.96	0.00	43.25	3.18
49	50	6.771267	GGGTATCTTGTAAATTCAAGGGTAGG	59.229	42.308	6.96	0.00	43.25	3.18
50	51	6.771267	GGTATCTTGTAAATTCAAGGGTAGGG	59.229	42.308	6.96	0.00	43.25	3.53
51	52	4.595986	TCTTGTAAATTCAAGGGTAGGGC	58.404	43.478	6.96	0.00	43.25	5.19
52	53	4.291249	TCTTGTAAATTCAAGGGTAGGGCT	59.709	41.667	6.96	0.00	43.25	5.19
53	54	4.668138	TGTAAATTCAAGGGTAGGGCTT	57.332	40.909	0.00	0.00	0.00	4.35
54	55	4.340617	TGTAAATTCAAGGGTAGGGCTTG	58.659	43.478	0.00	0.00	0.00	4.01
55	56	1.852633	AATTCAAGGGTAGGGCTTGC	58.147	50.000	0.00	0.00	0.00	4.01
56	57	0.704076	ATTCAAGGGTAGGGCTTGCA	59.296	50.000	0.00	0.00	0.00	4.08
57	58	0.704076	TTCAAGGGTAGGGCTTGCAT	59.296	50.000	0.00	0.00	0.00	3.96
58	59	0.704076	TCAAGGGTAGGGCTTGCATT	59.296	50.000	0.00	0.00	0.00	3.56
59	60	1.106285	CAAGGGTAGGGCTTGCATTC	58.894	55.000	0.00	0.00	0.00	2.67
60	61	1.002857	AAGGGTAGGGCTTGCATTCT	58.997	50.000	0.00	0.00	0.00	2.40
61	62	0.257039	AGGGTAGGGCTTGCATTCTG	59.743	55.000	0.00	0.00	0.00	3.02
62	63	0.255890	GGGTAGGGCTTGCATTCTGA	59.744	55.000	0.00	0.00	0.00	3.27
63	64	1.133668	GGGTAGGGCTTGCATTCTGAT	60.134	52.381	0.00	0.00	0.00	2.90
64	65	2.225467	GGTAGGGCTTGCATTCTGATC	58.775	52.381	0.00	0.00	0.00	2.92
65	66	2.421952	GGTAGGGCTTGCATTCTGATCA	60.422	50.000	0.00	0.00	0.00	2.92
195	196	8.514330	AGTTATCAATGGTTTAGCCGAAAATA	57.486	30.769	0.00	0.00	41.21	1.40
658	661	1.973812	GCAGCAGTCCAAGGGGTTC	60.974	63.158	0.00	0.00	34.93	3.62
669	672	3.117963	TCCAAGGGGTTCGTTCACTTTTA	60.118	43.478	0.00	0.00	34.93	1.52
690	693	2.821969	AGTCATGCTACCTTTGCTTTGG	59.178	45.455	0.00	0.00	0.00	3.28
1020	1023	8.995027	AATCTATGGAAGCATTGGTTTATACA	57.005	30.769	2.14	1.43	0.00	2.29
1029	1032	9.435688	GAAGCATTGGTTTATACATTCCTTTTT	57.564	29.630	2.14	0.00	0.00	1.94
1051	1055	9.685828	TTTTTGTTTCGACTTTAGGGATAATTG	57.314	29.630	0.00	0.00	0.00	2.32
1287	1291	2.280628	GGAGATGGCGACTAAAGTTGG	58.719	52.381	0.00	0.00	0.00	3.77
1493	1497	6.796785	AACCCTTGAATTCAGAATAATGGG	57.203	37.500	19.22	19.22	37.08	4.00
1837	1842	9.684448	TCTATCAAGATGATTCTAATTCGTCAC	57.316	33.333	0.00	0.00	38.26	3.67
2012	2020	6.385033	CAATTTTGTTTGCCCAAAAGACAAA	58.615	32.000	10.49	5.74	44.80	2.83
2014	2023	7.872113	ATTTTGTTTGCCCAAAAGACAAATA	57.128	28.000	9.15	0.00	44.80	1.40
2019	2028	7.924940	TGTTTGCCCAAAAGACAAATATTTTC	58.075	30.769	0.00	0.72	35.87	2.29
2020	2029	7.772757	TGTTTGCCCAAAAGACAAATATTTTCT	59.227	29.630	0.00	2.96	35.87	2.52
2021	2030	7.961325	TTGCCCAAAAGACAAATATTTTCTC	57.039	32.000	0.00	0.00	26.55	2.87
2022	2031	7.301868	TGCCCAAAAGACAAATATTTTCTCT	57.698	32.000	0.00	0.00	26.55	3.10
2023	2032	7.378181	TGCCCAAAAGACAAATATTTTCTCTC	58.622	34.615	0.00	0.00	26.55	3.20
2024	2033	6.528072	GCCCAAAAGACAAATATTTTCTCTCG	59.472	38.462	0.00	0.00	26.55	4.04
2105	2117	2.628178	ACCCTTGCCTTTTGTTTAGCTC	59.372	45.455	0.00	0.00	0.00	4.09

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	5.509498	CTTTTTCCTCTCCATGGGATTACA	58.491	41.667	13.02	0.00	0.00	2.41
1	2	4.889995	CCTTTTTCCTCTCCATGGGATTAC	59.110	45.833	13.02	0.00	0.00	1.89
2	3	4.079212	CCCTTTTTCCTCTCCATGGGATTA	60.079	45.833	13.02	0.00	35.64	1.75
4	5	2.245806	CCCTTTTTCCTCTCCATGGGAT	59.754	50.000	13.02	0.00	35.64	3.85
5	6	1.640670	CCCTTTTTCCTCTCCATGGGA	59.359	52.381	13.02	7.33	35.64	4.37
6	7	1.342374	CCCCTTTTTCCTCTCCATGGG	60.342	57.143	13.02	2.57	0.00	4.00
8	9	2.907458	ACCCCTTTTTCCTCTCCATG	57.093	50.000	0.00	0.00	0.00	3.66
9	10	4.384465	AGATACCCCTTTTTCCTCTCCAT	58.616	43.478	0.00	0.00	0.00	3.41
10	11	3.815507	AGATACCCCTTTTTCCTCTCCA	58.184	45.455	0.00	0.00	0.00	3.86
11	12	4.018324	ACAAGATACCCCTTTTTCCTCTCC	60.018	45.833	0.00	0.00	0.00	3.71
12	13	5.180810	ACAAGATACCCCTTTTTCCTCTC	57.819	43.478	0.00	0.00	0.00	3.20
13	14	6.713731	TTACAAGATACCCCTTTTTCCTCT	57.286	37.500	0.00	0.00	0.00	3.69
14	15	7.956328	ATTTACAAGATACCCCTTTTTCCTC	57.044	36.000	0.00	0.00	0.00	3.71
15	16	7.953493	TGAATTTACAAGATACCCCTTTTTCCT	59.047	33.333	0.00	0.00	0.00	3.36
16	17	8.129496	TGAATTTACAAGATACCCCTTTTTCC	57.871	34.615	0.00	0.00	0.00	3.13
17	18	9.639601	CTTGAATTTACAAGATACCCCTTTTTC	57.360	33.333	0.00	0.00	46.85	2.29
18	19	8.593679	CCTTGAATTTACAAGATACCCCTTTTT	58.406	33.333	8.15	0.00	46.85	1.94
19	20	7.180229	CCCTTGAATTTACAAGATACCCCTTTT	59.820	37.037	8.15	0.00	46.85	2.27
20	21	6.667848	CCCTTGAATTTACAAGATACCCCTTT	59.332	38.462	8.15	0.00	46.85	3.11
21	22	6.194967	CCCTTGAATTTACAAGATACCCCTT	58.805	40.000	8.15	0.00	46.85	3.95
22	23	5.255443	ACCCTTGAATTTACAAGATACCCCT	59.745	40.000	8.15	0.00	46.85	4.79
23	24	5.516044	ACCCTTGAATTTACAAGATACCCC	58.484	41.667	8.15	0.00	46.85	4.95
24	25	6.771267	CCTACCCTTGAATTTACAAGATACCC	59.229	42.308	8.15	0.00	46.85	3.69
25	26	6.771267	CCCTACCCTTGAATTTACAAGATACC	59.229	42.308	8.15	0.00	46.85	2.73
26	27	6.262496	GCCCTACCCTTGAATTTACAAGATAC	59.738	42.308	8.15	0.00	46.85	2.24
27	28	6.159751	AGCCCTACCCTTGAATTTACAAGATA	59.840	38.462	8.15	1.49	46.85	1.98
28	29	5.044105	AGCCCTACCCTTGAATTTACAAGAT	60.044	40.000	8.15	0.55	46.85	2.40
29	30	4.291249	AGCCCTACCCTTGAATTTACAAGA	59.709	41.667	8.15	0.00	46.85	3.02
30	31	4.600062	AGCCCTACCCTTGAATTTACAAG	58.400	43.478	0.00	0.00	44.50	3.16
31	32	4.668138	AGCCCTACCCTTGAATTTACAA	57.332	40.909	0.00	0.00	0.00	2.41
32	33	4.340617	CAAGCCCTACCCTTGAATTTACA	58.659	43.478	0.00	0.00	41.64	2.41
33	34	3.130516	GCAAGCCCTACCCTTGAATTTAC	59.869	47.826	5.41	0.00	41.64	2.01
34	35	3.245443	TGCAAGCCCTACCCTTGAATTTA	60.245	43.478	5.41	0.00	41.64	1.40
35	36	2.179427	GCAAGCCCTACCCTTGAATTT	58.821	47.619	5.41	0.00	41.64	1.82
36	37	1.077005	TGCAAGCCCTACCCTTGAATT	59.923	47.619	5.41	0.00	41.64	2.17
37	38	0.704076	TGCAAGCCCTACCCTTGAAT	59.296	50.000	5.41	0.00	41.64	2.57
38	39	0.704076	ATGCAAGCCCTACCCTTGAA	59.296	50.000	5.41	0.00	41.64	2.69
39	40	0.704076	AATGCAAGCCCTACCCTTGA	59.296	50.000	5.41	0.00	41.64	3.02
40	41	1.106285	GAATGCAAGCCCTACCCTTG	58.894	55.000	0.00	0.00	41.93	3.61
41	42	1.002857	AGAATGCAAGCCCTACCCTT	58.997	50.000	0.00	0.00	0.00	3.95
42	43	0.257039	CAGAATGCAAGCCCTACCCT	59.743	55.000	0.00	0.00	0.00	4.34
43	44	0.255890	TCAGAATGCAAGCCCTACCC	59.744	55.000	0.00	0.00	34.76	3.69
44	45	2.225467	GATCAGAATGCAAGCCCTACC	58.775	52.381	0.00	0.00	34.76	3.18
45	46	2.877168	CTGATCAGAATGCAAGCCCTAC	59.123	50.000	18.34	0.00	34.76	3.18
46	47	2.747467	GCTGATCAGAATGCAAGCCCTA	60.747	50.000	27.04	0.00	34.76	3.53
47	48	2.022754	GCTGATCAGAATGCAAGCCCT	61.023	52.381	27.04	0.00	34.76	5.19
48	49	0.384669	GCTGATCAGAATGCAAGCCC	59.615	55.000	27.04	0.27	34.76	5.19
49	50	1.065701	CAGCTGATCAGAATGCAAGCC	59.934	52.381	27.04	5.02	36.56	4.35
50	51	1.065701	CCAGCTGATCAGAATGCAAGC	59.934	52.381	27.04	9.05	36.28	4.01
51	52	2.640184	TCCAGCTGATCAGAATGCAAG	58.360	47.619	27.04	10.86	34.76	4.01
52	53	2.751259	GTTCCAGCTGATCAGAATGCAA	59.249	45.455	27.04	13.10	34.76	4.08
53	54	2.026542	AGTTCCAGCTGATCAGAATGCA	60.027	45.455	27.04	7.39	34.76	3.96
54	55	2.641305	AGTTCCAGCTGATCAGAATGC	58.359	47.619	27.04	11.77	34.76	3.56
55	56	5.236695	CACATAGTTCCAGCTGATCAGAATG	59.763	44.000	27.04	21.31	37.54	2.67
56	57	5.366460	CACATAGTTCCAGCTGATCAGAAT	58.634	41.667	27.04	10.93	0.00	2.40
57	58	4.383444	CCACATAGTTCCAGCTGATCAGAA	60.383	45.833	27.04	8.95	0.00	3.02
58	59	3.133542	CCACATAGTTCCAGCTGATCAGA	59.866	47.826	27.04	2.20	0.00	3.27
59	60	3.118482	ACCACATAGTTCCAGCTGATCAG	60.118	47.826	18.84	18.84	0.00	2.90
60	61	2.840038	ACCACATAGTTCCAGCTGATCA	59.160	45.455	17.39	0.00	0.00	2.92
61	62	3.550437	ACCACATAGTTCCAGCTGATC	57.450	47.619	17.39	4.95	0.00	2.92
62	63	4.202398	CCATACCACATAGTTCCAGCTGAT	60.202	45.833	17.39	0.00	0.00	2.90
63	64	3.134623	CCATACCACATAGTTCCAGCTGA	59.865	47.826	17.39	0.00	0.00	4.26
64	65	3.470709	CCATACCACATAGTTCCAGCTG	58.529	50.000	6.78	6.78	0.00	4.24
65	66	2.439507	CCCATACCACATAGTTCCAGCT	59.560	50.000	0.00	0.00	0.00	4.24
175	176	8.514330	ACTAATATTTTCGGCTAAACCATTGA	57.486	30.769	0.00	0.00	39.03	2.57
195	196	9.959721	TTTAGACCAAGCTTCTGATAAACTAAT	57.040	29.630	0.00	0.00	0.00	1.73
273	274	1.143684	GCCTGCTCTGAATAATCCCCA	59.856	52.381	0.00	0.00	0.00	4.96
639	642	2.697147	GAACCCCTTGGACTGCTGCA	62.697	60.000	0.88	0.88	34.81	4.41
658	661	4.929808	AGGTAGCATGACTAAAAGTGAACG	59.070	41.667	0.00	0.00	30.90	3.95
669	672	2.821969	CCAAAGCAAAGGTAGCATGACT	59.178	45.455	0.00	0.00	0.00	3.41
690	693	4.976116	CCAAATGTGTCCGAAAAAGAAGAC	59.024	41.667	0.00	0.00	0.00	3.01
800	803	2.418746	CCTTGTAGTTGGATCTCCCACG	60.419	54.545	0.00	0.00	46.62	4.94
1020	1023	6.548251	TCCCTAAAGTCGAAACAAAAAGGAAT	59.452	34.615	0.00	0.00	0.00	3.01
1029	1032	7.989416	AACAATTATCCCTAAAGTCGAAACA	57.011	32.000	0.00	0.00	0.00	2.83
1051	1055	4.421948	TCTCGGAAGAAGATAGCGAAAAC	58.578	43.478	0.00	0.00	41.32	2.43
1583	1587	4.322101	CGTCCAGTAAAACGGAAGAATG	57.678	45.455	0.00	0.00	33.13	2.67
2023	2032	6.937457	ATCAATGTAATGACTCGACAAATCG	58.063	36.000	0.00	0.00	39.94	3.34
2024	2033	8.390354	TGAATCAATGTAATGACTCGACAAATC	58.610	33.333	0.00	0.00	28.40	2.17
2043	2054	9.681692	CCGCTTGATAATCATTTATTGAATCAA	57.318	29.630	0.00	0.00	38.42	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.