Multiple sequence alignment - TraesCS5D01G221100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G221100 chr5D 100.000 2372 0 0 1 2372 329149941 329152312 0.000000e+00 4381
1 TraesCS5D01G221100 chr5D 97.614 1970 45 2 404 2372 6163407 6165375 0.000000e+00 3376
2 TraesCS5D01G221100 chr5D 97.563 1970 43 5 404 2372 503305375 503303410 0.000000e+00 3367
3 TraesCS5D01G221100 chr5D 97.740 1770 38 2 404 2173 6261400 6263167 0.000000e+00 3046
4 TraesCS5D01G221100 chr5D 94.118 68 4 0 450 517 484115205 484115272 1.160000e-18 104
5 TraesCS5D01G221100 chr1D 97.614 1970 42 5 404 2372 254448542 254446577 0.000000e+00 3373
6 TraesCS5D01G221100 chr1D 96.853 1970 59 3 404 2372 51858528 51860495 0.000000e+00 3291
7 TraesCS5D01G221100 chr1D 97.642 212 5 0 83 294 459902135 459901924 4.820000e-97 364
8 TraesCS5D01G221100 chr6B 96.599 1970 53 2 404 2372 18746559 18748515 0.000000e+00 3254
9 TraesCS5D01G221100 chrUn 98.228 1298 22 1 694 1990 414537825 414539122 0.000000e+00 2268
10 TraesCS5D01G221100 chrUn 98.585 212 3 0 83 294 433990771 433990982 2.230000e-100 375
11 TraesCS5D01G221100 chrUn 98.113 212 4 0 83 294 414708699 414708910 1.040000e-98 370
12 TraesCS5D01G221100 chrUn 98.113 212 4 0 83 294 428084310 428084099 1.040000e-98 370
13 TraesCS5D01G221100 chrUn 98.113 212 4 0 83 294 461211062 461210851 1.040000e-98 370
14 TraesCS5D01G221100 chr2D 97.995 1297 26 0 509 1805 135988929 135987633 0.000000e+00 2252
15 TraesCS5D01G221100 chr3B 98.474 1245 18 1 1129 2372 101907363 101908607 0.000000e+00 2193
16 TraesCS5D01G221100 chr4A 95.011 1323 61 4 404 1725 544291326 544290008 0.000000e+00 2073
17 TraesCS5D01G221100 chr7D 98.113 212 4 0 83 294 231605336 231605125 1.040000e-98 370
18 TraesCS5D01G221100 chr7D 98.462 65 1 0 404 468 231558612 231558548 5.360000e-22 115
19 TraesCS5D01G221100 chr6D 98.113 212 4 0 83 294 389243240 389243029 1.040000e-98 370
20 TraesCS5D01G221100 chr3A 98.113 212 4 0 83 294 66002551 66002340 1.040000e-98 370
21 TraesCS5D01G221100 chr2A 98.113 212 4 0 83 294 726903873 726903662 1.040000e-98 370


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G221100 chr5D 329149941 329152312 2371 False 4381 4381 100.000 1 2372 1 chr5D.!!$F3 2371
1 TraesCS5D01G221100 chr5D 6163407 6165375 1968 False 3376 3376 97.614 404 2372 1 chr5D.!!$F1 1968
2 TraesCS5D01G221100 chr5D 503303410 503305375 1965 True 3367 3367 97.563 404 2372 1 chr5D.!!$R1 1968
3 TraesCS5D01G221100 chr5D 6261400 6263167 1767 False 3046 3046 97.740 404 2173 1 chr5D.!!$F2 1769
4 TraesCS5D01G221100 chr1D 254446577 254448542 1965 True 3373 3373 97.614 404 2372 1 chr1D.!!$R1 1968
5 TraesCS5D01G221100 chr1D 51858528 51860495 1967 False 3291 3291 96.853 404 2372 1 chr1D.!!$F1 1968
6 TraesCS5D01G221100 chr6B 18746559 18748515 1956 False 3254 3254 96.599 404 2372 1 chr6B.!!$F1 1968
7 TraesCS5D01G221100 chrUn 414537825 414539122 1297 False 2268 2268 98.228 694 1990 1 chrUn.!!$F1 1296
8 TraesCS5D01G221100 chr2D 135987633 135988929 1296 True 2252 2252 97.995 509 1805 1 chr2D.!!$R1 1296
9 TraesCS5D01G221100 chr3B 101907363 101908607 1244 False 2193 2193 98.474 1129 2372 1 chr3B.!!$F1 1243
10 TraesCS5D01G221100 chr4A 544290008 544291326 1318 True 2073 2073 95.011 404 1725 1 chr4A.!!$R1 1321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.033208 TGGTGAGAATCCAATGCCCC 60.033 55.0 0.00 0.0 31.50 5.80 F
290 291 0.099968 CGAAAGGCGTAGTCGATGGA 59.900 55.0 6.58 0.0 36.95 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1315 1322 2.091444 AGTTGGAGGGCCTAGTATACGT 60.091 50.000 5.73 0.0 34.31 3.57 R
1488 1495 2.544267 AGCTGAAAACGAAGACGAAAGG 59.456 45.455 0.00 0.0 42.66 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.399856 AGGCGTGCAAAGTTTTCGA 58.600 47.368 0.00 0.00 0.00 3.71
19 20 0.951558 AGGCGTGCAAAGTTTTCGAT 59.048 45.000 0.00 0.00 0.00 3.59
20 21 1.336755 AGGCGTGCAAAGTTTTCGATT 59.663 42.857 0.00 0.00 0.00 3.34
21 22 2.124122 GGCGTGCAAAGTTTTCGATTT 58.876 42.857 0.00 0.00 0.00 2.17
22 23 2.097444 GGCGTGCAAAGTTTTCGATTTG 60.097 45.455 5.11 5.11 39.01 2.32
23 24 2.786578 GCGTGCAAAGTTTTCGATTTGA 59.213 40.909 12.26 0.00 38.42 2.69
24 25 3.241784 GCGTGCAAAGTTTTCGATTTGAA 59.758 39.130 12.26 0.08 38.42 2.69
25 26 4.085107 GCGTGCAAAGTTTTCGATTTGAAT 60.085 37.500 12.26 0.00 38.42 2.57
26 27 5.589516 CGTGCAAAGTTTTCGATTTGAATC 58.410 37.500 12.26 0.00 38.42 2.52
27 28 5.172951 CGTGCAAAGTTTTCGATTTGAATCA 59.827 36.000 12.26 0.20 38.42 2.57
28 29 6.291532 CGTGCAAAGTTTTCGATTTGAATCAA 60.292 34.615 12.26 0.00 38.42 2.57
29 30 7.397970 GTGCAAAGTTTTCGATTTGAATCAAA 58.602 30.769 11.10 11.10 38.42 2.69
30 31 7.902403 GTGCAAAGTTTTCGATTTGAATCAAAA 59.098 29.630 12.75 0.00 38.42 2.44
31 32 8.610896 TGCAAAGTTTTCGATTTGAATCAAAAT 58.389 25.926 12.75 1.79 38.42 1.82
67 68 9.964354 TTTATCTCATATTTATCCCTGTCATGG 57.036 33.333 0.00 0.00 0.00 3.66
68 69 7.819521 ATCTCATATTTATCCCTGTCATGGA 57.180 36.000 0.00 0.00 36.05 3.41
69 70 7.819521 TCTCATATTTATCCCTGTCATGGAT 57.180 36.000 13.49 13.49 44.71 3.41
70 71 8.223378 TCTCATATTTATCCCTGTCATGGATT 57.777 34.615 14.10 0.85 42.57 3.01
71 72 8.324306 TCTCATATTTATCCCTGTCATGGATTC 58.676 37.037 14.10 0.00 42.57 2.52
72 73 7.987820 TCATATTTATCCCTGTCATGGATTCA 58.012 34.615 14.10 3.34 42.57 2.57
73 74 8.105197 TCATATTTATCCCTGTCATGGATTCAG 58.895 37.037 14.10 0.00 42.57 3.02
74 75 2.653234 ATCCCTGTCATGGATTCAGC 57.347 50.000 3.92 0.00 39.64 4.26
75 76 1.288188 TCCCTGTCATGGATTCAGCA 58.712 50.000 0.00 0.00 0.00 4.41
76 77 1.211212 TCCCTGTCATGGATTCAGCAG 59.789 52.381 0.00 0.00 0.00 4.24
77 78 1.676746 CCTGTCATGGATTCAGCAGG 58.323 55.000 7.42 7.42 36.06 4.85
78 79 1.064906 CCTGTCATGGATTCAGCAGGT 60.065 52.381 11.80 0.00 36.93 4.00
79 80 2.171237 CCTGTCATGGATTCAGCAGGTA 59.829 50.000 11.80 0.00 36.93 3.08
80 81 3.464907 CTGTCATGGATTCAGCAGGTAG 58.535 50.000 0.00 0.00 0.00 3.18
81 82 2.840038 TGTCATGGATTCAGCAGGTAGT 59.160 45.455 0.00 0.00 0.00 2.73
82 83 3.264193 TGTCATGGATTCAGCAGGTAGTT 59.736 43.478 0.00 0.00 0.00 2.24
83 84 3.873952 GTCATGGATTCAGCAGGTAGTTC 59.126 47.826 0.00 0.00 0.00 3.01
84 85 3.519107 TCATGGATTCAGCAGGTAGTTCA 59.481 43.478 0.00 0.00 0.00 3.18
85 86 4.164796 TCATGGATTCAGCAGGTAGTTCAT 59.835 41.667 0.00 0.00 0.00 2.57
86 87 5.366477 TCATGGATTCAGCAGGTAGTTCATA 59.634 40.000 0.00 0.00 0.00 2.15
87 88 5.692115 TGGATTCAGCAGGTAGTTCATAA 57.308 39.130 0.00 0.00 0.00 1.90
88 89 6.252599 TGGATTCAGCAGGTAGTTCATAAT 57.747 37.500 0.00 0.00 0.00 1.28
89 90 6.057533 TGGATTCAGCAGGTAGTTCATAATG 58.942 40.000 0.00 0.00 0.00 1.90
90 91 5.049129 GGATTCAGCAGGTAGTTCATAATGC 60.049 44.000 0.00 0.00 0.00 3.56
91 92 4.486125 TCAGCAGGTAGTTCATAATGCA 57.514 40.909 0.00 0.00 32.99 3.96
92 93 5.039920 TCAGCAGGTAGTTCATAATGCAT 57.960 39.130 0.00 0.00 32.99 3.96
93 94 5.059161 TCAGCAGGTAGTTCATAATGCATC 58.941 41.667 0.00 0.00 32.99 3.91
94 95 4.060900 AGCAGGTAGTTCATAATGCATCG 58.939 43.478 0.00 0.00 32.99 3.84
95 96 3.187227 GCAGGTAGTTCATAATGCATCGG 59.813 47.826 0.00 0.00 31.59 4.18
96 97 4.380531 CAGGTAGTTCATAATGCATCGGT 58.619 43.478 0.00 0.00 0.00 4.69
97 98 5.538118 CAGGTAGTTCATAATGCATCGGTA 58.462 41.667 0.00 0.00 0.00 4.02
98 99 5.635280 CAGGTAGTTCATAATGCATCGGTAG 59.365 44.000 0.00 0.00 0.00 3.18
99 100 4.929808 GGTAGTTCATAATGCATCGGTAGG 59.070 45.833 0.00 0.00 0.00 3.18
100 101 4.008074 AGTTCATAATGCATCGGTAGGG 57.992 45.455 0.00 0.00 0.00 3.53
101 102 3.074412 GTTCATAATGCATCGGTAGGGG 58.926 50.000 0.00 0.00 0.00 4.79
102 103 2.615391 TCATAATGCATCGGTAGGGGA 58.385 47.619 0.00 0.00 0.00 4.81
103 104 2.567169 TCATAATGCATCGGTAGGGGAG 59.433 50.000 0.00 0.00 0.00 4.30
104 105 0.685097 TAATGCATCGGTAGGGGAGC 59.315 55.000 0.00 0.00 0.00 4.70
110 111 4.203076 CGGTAGGGGAGCGTTCCG 62.203 72.222 12.54 0.00 45.04 4.30
121 122 3.612251 CGTTCCGCCTTAGAGGGA 58.388 61.111 0.00 0.00 35.37 4.20
122 123 1.895238 CGTTCCGCCTTAGAGGGAA 59.105 57.895 0.90 0.90 37.49 3.97
123 124 0.179108 CGTTCCGCCTTAGAGGGAAG 60.179 60.000 4.60 0.00 40.31 3.46
124 125 0.462225 GTTCCGCCTTAGAGGGAAGC 60.462 60.000 4.60 0.00 40.31 3.86
125 126 0.907704 TTCCGCCTTAGAGGGAAGCA 60.908 55.000 0.90 0.00 35.01 3.91
126 127 0.907704 TCCGCCTTAGAGGGAAGCAA 60.908 55.000 0.00 0.00 35.37 3.91
127 128 0.744771 CCGCCTTAGAGGGAAGCAAC 60.745 60.000 0.00 0.00 35.37 4.17
128 129 0.744771 CGCCTTAGAGGGAAGCAACC 60.745 60.000 0.00 0.00 35.37 3.77
129 130 0.328258 GCCTTAGAGGGAAGCAACCA 59.672 55.000 0.00 0.00 35.37 3.67
130 131 1.950954 GCCTTAGAGGGAAGCAACCAC 60.951 57.143 0.00 0.00 35.37 4.16
131 132 1.676014 CCTTAGAGGGAAGCAACCACG 60.676 57.143 1.88 0.00 0.00 4.94
132 133 1.275291 CTTAGAGGGAAGCAACCACGA 59.725 52.381 0.00 0.00 0.00 4.35
133 134 1.344065 TAGAGGGAAGCAACCACGAA 58.656 50.000 0.00 0.00 0.00 3.85
134 135 0.472471 AGAGGGAAGCAACCACGAAA 59.528 50.000 0.00 0.00 0.00 3.46
135 136 0.875059 GAGGGAAGCAACCACGAAAG 59.125 55.000 0.00 0.00 0.00 2.62
136 137 1.172812 AGGGAAGCAACCACGAAAGC 61.173 55.000 0.00 0.00 0.00 3.51
137 138 1.082104 GGAAGCAACCACGAAAGCG 60.082 57.895 0.00 0.00 44.79 4.68
138 139 1.082104 GAAGCAACCACGAAAGCGG 60.082 57.895 0.00 0.00 43.17 5.52
139 140 2.458006 GAAGCAACCACGAAAGCGGG 62.458 60.000 0.00 0.00 43.17 6.13
145 146 4.367023 CACGAAAGCGGGGGTCGA 62.367 66.667 0.00 0.00 43.17 4.20
146 147 4.368543 ACGAAAGCGGGGGTCGAC 62.369 66.667 7.13 7.13 43.17 4.20
148 149 4.060038 GAAAGCGGGGGTCGACGA 62.060 66.667 9.92 0.00 42.43 4.20
149 150 3.578515 GAAAGCGGGGGTCGACGAA 62.579 63.158 9.92 0.00 42.43 3.85
150 151 3.584868 AAAGCGGGGGTCGACGAAG 62.585 63.158 9.92 2.07 42.43 3.79
155 156 4.060038 GGGGTCGACGAAGCGGAA 62.060 66.667 9.92 0.00 0.00 4.30
156 157 2.506438 GGGTCGACGAAGCGGAAG 60.506 66.667 9.92 0.00 0.00 3.46
175 176 3.425578 CGAGAATGTCGGCTTGAGT 57.574 52.632 0.00 0.00 45.58 3.41
176 177 2.561733 CGAGAATGTCGGCTTGAGTA 57.438 50.000 0.00 0.00 45.58 2.59
177 178 2.876091 CGAGAATGTCGGCTTGAGTAA 58.124 47.619 0.00 0.00 45.58 2.24
178 179 2.599082 CGAGAATGTCGGCTTGAGTAAC 59.401 50.000 0.00 0.00 45.58 2.50
179 180 3.585862 GAGAATGTCGGCTTGAGTAACA 58.414 45.455 0.00 0.00 0.00 2.41
180 181 3.994392 GAGAATGTCGGCTTGAGTAACAA 59.006 43.478 0.00 0.00 36.97 2.83
181 182 4.385825 AGAATGTCGGCTTGAGTAACAAA 58.614 39.130 0.00 0.00 38.08 2.83
182 183 4.819630 AGAATGTCGGCTTGAGTAACAAAA 59.180 37.500 0.00 0.00 38.08 2.44
183 184 5.298276 AGAATGTCGGCTTGAGTAACAAAAA 59.702 36.000 0.00 0.00 38.08 1.94
184 185 4.281525 TGTCGGCTTGAGTAACAAAAAC 57.718 40.909 0.00 0.00 38.08 2.43
185 186 3.690139 TGTCGGCTTGAGTAACAAAAACA 59.310 39.130 0.00 0.00 38.08 2.83
186 187 4.336993 TGTCGGCTTGAGTAACAAAAACAT 59.663 37.500 0.00 0.00 38.08 2.71
187 188 5.163602 TGTCGGCTTGAGTAACAAAAACATT 60.164 36.000 0.00 0.00 38.08 2.71
188 189 5.173131 GTCGGCTTGAGTAACAAAAACATTG 59.827 40.000 0.00 0.00 38.08 2.82
189 190 4.444056 CGGCTTGAGTAACAAAAACATTGG 59.556 41.667 0.00 0.00 38.08 3.16
190 191 5.356426 GGCTTGAGTAACAAAAACATTGGT 58.644 37.500 0.00 0.00 38.08 3.67
191 192 5.234116 GGCTTGAGTAACAAAAACATTGGTG 59.766 40.000 0.00 0.00 38.08 4.17
192 193 6.039616 GCTTGAGTAACAAAAACATTGGTGA 58.960 36.000 0.00 0.00 38.08 4.02
193 194 6.198966 GCTTGAGTAACAAAAACATTGGTGAG 59.801 38.462 0.00 0.00 38.08 3.51
194 195 7.397892 TTGAGTAACAAAAACATTGGTGAGA 57.602 32.000 0.00 0.00 35.39 3.27
195 196 7.397892 TGAGTAACAAAAACATTGGTGAGAA 57.602 32.000 0.00 0.00 0.00 2.87
196 197 8.006298 TGAGTAACAAAAACATTGGTGAGAAT 57.994 30.769 0.00 0.00 0.00 2.40
197 198 8.134895 TGAGTAACAAAAACATTGGTGAGAATC 58.865 33.333 0.00 0.00 0.00 2.52
198 199 7.433680 AGTAACAAAAACATTGGTGAGAATCC 58.566 34.615 0.00 0.00 0.00 3.01
199 200 5.867903 ACAAAAACATTGGTGAGAATCCA 57.132 34.783 0.00 0.00 0.00 3.41
200 201 6.232581 ACAAAAACATTGGTGAGAATCCAA 57.767 33.333 0.00 0.00 46.82 3.53
205 206 1.851304 TTGGTGAGAATCCAATGCCC 58.149 50.000 0.00 0.00 39.62 5.36
206 207 0.033208 TGGTGAGAATCCAATGCCCC 60.033 55.000 0.00 0.00 31.50 5.80
207 208 0.033208 GGTGAGAATCCAATGCCCCA 60.033 55.000 0.00 0.00 0.00 4.96
208 209 1.619432 GGTGAGAATCCAATGCCCCAA 60.619 52.381 0.00 0.00 0.00 4.12
209 210 2.178580 GTGAGAATCCAATGCCCCAAA 58.821 47.619 0.00 0.00 0.00 3.28
210 211 2.566724 GTGAGAATCCAATGCCCCAAAA 59.433 45.455 0.00 0.00 0.00 2.44
211 212 3.007831 GTGAGAATCCAATGCCCCAAAAA 59.992 43.478 0.00 0.00 0.00 1.94
212 213 3.007831 TGAGAATCCAATGCCCCAAAAAC 59.992 43.478 0.00 0.00 0.00 2.43
213 214 2.305635 AGAATCCAATGCCCCAAAAACC 59.694 45.455 0.00 0.00 0.00 3.27
214 215 0.991146 ATCCAATGCCCCAAAAACCC 59.009 50.000 0.00 0.00 0.00 4.11
215 216 0.400525 TCCAATGCCCCAAAAACCCA 60.401 50.000 0.00 0.00 0.00 4.51
216 217 0.475906 CCAATGCCCCAAAAACCCAA 59.524 50.000 0.00 0.00 0.00 4.12
217 218 1.545204 CCAATGCCCCAAAAACCCAAG 60.545 52.381 0.00 0.00 0.00 3.61
218 219 0.770499 AATGCCCCAAAAACCCAAGG 59.230 50.000 0.00 0.00 0.00 3.61
219 220 0.401250 ATGCCCCAAAAACCCAAGGT 60.401 50.000 0.00 0.00 37.65 3.50
228 229 1.228459 AACCCAAGGTTTCCTCCGC 60.228 57.895 0.00 0.00 44.33 5.54
229 230 2.002018 AACCCAAGGTTTCCTCCGCA 62.002 55.000 0.00 0.00 44.33 5.69
230 231 1.228429 CCCAAGGTTTCCTCCGCAA 60.228 57.895 0.00 0.00 30.89 4.85
231 232 1.244019 CCCAAGGTTTCCTCCGCAAG 61.244 60.000 0.00 0.00 30.89 4.01
243 244 3.411351 CGCAAGGTTCGTCCACGG 61.411 66.667 0.00 0.00 40.29 4.94
244 245 2.029964 GCAAGGTTCGTCCACGGA 59.970 61.111 0.00 0.00 40.29 4.69
245 246 2.027625 GCAAGGTTCGTCCACGGAG 61.028 63.158 0.00 0.00 40.29 4.63
246 247 1.374252 CAAGGTTCGTCCACGGAGG 60.374 63.158 0.00 0.00 40.29 4.30
247 248 2.580601 AAGGTTCGTCCACGGAGGG 61.581 63.158 5.97 0.00 40.29 4.30
248 249 3.308705 GGTTCGTCCACGGAGGGT 61.309 66.667 5.97 0.00 40.29 4.34
249 250 2.048503 GTTCGTCCACGGAGGGTG 60.049 66.667 5.97 0.00 46.57 4.61
257 258 2.283966 ACGGAGGGTGAGTCAGGG 60.284 66.667 0.00 0.00 0.00 4.45
258 259 3.775654 CGGAGGGTGAGTCAGGGC 61.776 72.222 0.00 0.00 0.00 5.19
259 260 3.403558 GGAGGGTGAGTCAGGGCC 61.404 72.222 0.00 0.00 0.00 5.80
260 261 2.284995 GAGGGTGAGTCAGGGCCT 60.285 66.667 0.00 0.00 0.00 5.19
261 262 1.001760 GAGGGTGAGTCAGGGCCTA 59.998 63.158 5.28 0.00 0.00 3.93
262 263 0.617820 GAGGGTGAGTCAGGGCCTAA 60.618 60.000 5.28 0.00 0.00 2.69
263 264 0.618968 AGGGTGAGTCAGGGCCTAAG 60.619 60.000 5.28 0.00 0.00 2.18
264 265 0.617820 GGGTGAGTCAGGGCCTAAGA 60.618 60.000 5.28 0.00 0.00 2.10
265 266 1.501582 GGTGAGTCAGGGCCTAAGAT 58.498 55.000 5.28 0.00 0.00 2.40
266 267 1.414550 GGTGAGTCAGGGCCTAAGATC 59.585 57.143 5.28 2.78 0.00 2.75
267 268 2.111384 GTGAGTCAGGGCCTAAGATCA 58.889 52.381 5.28 5.73 0.00 2.92
268 269 2.102252 GTGAGTCAGGGCCTAAGATCAG 59.898 54.545 5.28 0.00 0.00 2.90
269 270 1.691434 GAGTCAGGGCCTAAGATCAGG 59.309 57.143 5.28 0.00 38.86 3.86
289 290 2.578369 CGAAAGGCGTAGTCGATGG 58.422 57.895 6.58 0.00 36.95 3.51
290 291 0.099968 CGAAAGGCGTAGTCGATGGA 59.900 55.000 6.58 0.00 36.95 3.41
291 292 1.557651 GAAAGGCGTAGTCGATGGAC 58.442 55.000 0.00 0.00 43.76 4.02
292 293 0.892755 AAAGGCGTAGTCGATGGACA 59.107 50.000 10.69 0.00 45.92 4.02
293 294 0.892755 AAGGCGTAGTCGATGGACAA 59.107 50.000 10.69 0.00 45.92 3.18
294 295 1.112113 AGGCGTAGTCGATGGACAAT 58.888 50.000 10.69 0.00 45.92 2.71
295 296 1.067212 AGGCGTAGTCGATGGACAATC 59.933 52.381 10.69 0.00 45.92 2.67
296 297 1.067212 GGCGTAGTCGATGGACAATCT 59.933 52.381 10.69 0.00 45.92 2.40
297 298 2.386249 GCGTAGTCGATGGACAATCTC 58.614 52.381 10.69 0.00 45.92 2.75
298 299 2.033550 GCGTAGTCGATGGACAATCTCT 59.966 50.000 10.69 0.00 45.92 3.10
299 300 3.250280 GCGTAGTCGATGGACAATCTCTA 59.750 47.826 10.69 0.00 45.92 2.43
300 301 4.611807 GCGTAGTCGATGGACAATCTCTAG 60.612 50.000 10.69 0.00 45.92 2.43
301 302 4.750598 CGTAGTCGATGGACAATCTCTAGA 59.249 45.833 10.69 0.00 45.92 2.43
302 303 5.236695 CGTAGTCGATGGACAATCTCTAGAA 59.763 44.000 10.69 0.00 45.92 2.10
303 304 6.238402 CGTAGTCGATGGACAATCTCTAGAAA 60.238 42.308 10.69 0.00 45.92 2.52
304 305 6.531503 AGTCGATGGACAATCTCTAGAAAA 57.468 37.500 10.69 0.00 45.92 2.29
305 306 6.936279 AGTCGATGGACAATCTCTAGAAAAA 58.064 36.000 10.69 0.00 45.92 1.94
306 307 7.038659 AGTCGATGGACAATCTCTAGAAAAAG 58.961 38.462 10.69 0.00 45.92 2.27
307 308 6.256757 GTCGATGGACAATCTCTAGAAAAAGG 59.743 42.308 2.59 0.00 42.91 3.11
308 309 5.007136 CGATGGACAATCTCTAGAAAAAGGC 59.993 44.000 0.00 0.00 32.61 4.35
309 310 5.241403 TGGACAATCTCTAGAAAAAGGCA 57.759 39.130 0.00 0.00 0.00 4.75
310 311 5.630121 TGGACAATCTCTAGAAAAAGGCAA 58.370 37.500 0.00 0.00 0.00 4.52
311 312 6.248433 TGGACAATCTCTAGAAAAAGGCAAT 58.752 36.000 0.00 0.00 0.00 3.56
312 313 6.375455 TGGACAATCTCTAGAAAAAGGCAATC 59.625 38.462 0.00 0.00 0.00 2.67
313 314 6.601217 GGACAATCTCTAGAAAAAGGCAATCT 59.399 38.462 0.00 0.00 0.00 2.40
314 315 7.770897 GGACAATCTCTAGAAAAAGGCAATCTA 59.229 37.037 0.00 0.00 0.00 1.98
315 316 9.167311 GACAATCTCTAGAAAAAGGCAATCTAA 57.833 33.333 0.00 0.00 0.00 2.10
316 317 9.520515 ACAATCTCTAGAAAAAGGCAATCTAAA 57.479 29.630 0.00 0.00 0.00 1.85
319 320 9.692325 ATCTCTAGAAAAAGGCAATCTAAATGT 57.308 29.630 0.00 0.00 0.00 2.71
320 321 9.520515 TCTCTAGAAAAAGGCAATCTAAATGTT 57.479 29.630 0.00 0.00 0.00 2.71
321 322 9.780413 CTCTAGAAAAAGGCAATCTAAATGTTC 57.220 33.333 0.00 0.00 0.00 3.18
322 323 8.450964 TCTAGAAAAAGGCAATCTAAATGTTCG 58.549 33.333 0.00 0.00 0.00 3.95
323 324 6.981722 AGAAAAAGGCAATCTAAATGTTCGT 58.018 32.000 0.00 0.00 0.00 3.85
324 325 7.433680 AGAAAAAGGCAATCTAAATGTTCGTT 58.566 30.769 0.00 0.00 0.00 3.85
325 326 7.595130 AGAAAAAGGCAATCTAAATGTTCGTTC 59.405 33.333 0.00 0.00 0.00 3.95
326 327 5.957842 AAGGCAATCTAAATGTTCGTTCA 57.042 34.783 0.00 0.00 0.00 3.18
327 328 5.296813 AGGCAATCTAAATGTTCGTTCAC 57.703 39.130 0.00 0.00 0.00 3.18
328 329 4.088648 GGCAATCTAAATGTTCGTTCACG 58.911 43.478 0.00 0.00 41.45 4.35
343 344 6.480524 TCGTTCACGAATCAAATTCATTCT 57.519 33.333 0.00 0.00 46.30 2.40
344 345 6.898041 TCGTTCACGAATCAAATTCATTCTT 58.102 32.000 0.00 0.00 46.30 2.52
345 346 7.359595 TCGTTCACGAATCAAATTCATTCTTT 58.640 30.769 0.00 0.00 46.30 2.52
346 347 7.860373 TCGTTCACGAATCAAATTCATTCTTTT 59.140 29.630 0.00 0.00 46.30 2.27
347 348 8.479280 CGTTCACGAATCAAATTCATTCTTTTT 58.521 29.630 0.00 0.00 43.02 1.94
369 370 7.964666 TTTTCATTAGGGGTTACAAATAGGG 57.035 36.000 0.00 0.00 0.00 3.53
370 371 6.661740 TTCATTAGGGGTTACAAATAGGGT 57.338 37.500 0.00 0.00 0.00 4.34
371 372 7.768324 TTCATTAGGGGTTACAAATAGGGTA 57.232 36.000 0.00 0.00 0.00 3.69
372 373 7.768324 TCATTAGGGGTTACAAATAGGGTAA 57.232 36.000 0.00 0.00 0.00 2.85
373 374 8.172555 TCATTAGGGGTTACAAATAGGGTAAA 57.827 34.615 0.00 0.00 32.94 2.01
374 375 8.793720 TCATTAGGGGTTACAAATAGGGTAAAT 58.206 33.333 0.00 0.00 32.94 1.40
375 376 9.074576 CATTAGGGGTTACAAATAGGGTAAATC 57.925 37.037 0.00 0.00 32.94 2.17
376 377 6.661740 AGGGGTTACAAATAGGGTAAATCA 57.338 37.500 0.00 0.00 32.94 2.57
377 378 7.046891 AGGGGTTACAAATAGGGTAAATCAA 57.953 36.000 0.00 0.00 32.94 2.57
378 379 6.893554 AGGGGTTACAAATAGGGTAAATCAAC 59.106 38.462 0.00 0.00 32.94 3.18
379 380 6.097270 GGGGTTACAAATAGGGTAAATCAACC 59.903 42.308 0.00 0.00 38.94 3.77
380 381 6.893554 GGGTTACAAATAGGGTAAATCAACCT 59.106 38.462 0.00 0.00 39.65 3.50
381 382 7.398047 GGGTTACAAATAGGGTAAATCAACCTT 59.602 37.037 0.00 0.00 39.65 3.50
382 383 8.809066 GGTTACAAATAGGGTAAATCAACCTTT 58.191 33.333 0.00 0.00 39.65 3.11
383 384 9.850628 GTTACAAATAGGGTAAATCAACCTTTC 57.149 33.333 0.00 0.00 39.65 2.62
384 385 9.589461 TTACAAATAGGGTAAATCAACCTTTCA 57.411 29.630 0.00 0.00 39.65 2.69
385 386 8.485578 ACAAATAGGGTAAATCAACCTTTCAA 57.514 30.769 0.00 0.00 39.65 2.69
386 387 8.929487 ACAAATAGGGTAAATCAACCTTTCAAA 58.071 29.630 0.00 0.00 39.65 2.69
387 388 9.203421 CAAATAGGGTAAATCAACCTTTCAAAC 57.797 33.333 0.00 0.00 39.65 2.93
388 389 8.485578 AATAGGGTAAATCAACCTTTCAAACA 57.514 30.769 0.00 0.00 39.65 2.83
389 390 6.994421 AGGGTAAATCAACCTTTCAAACAT 57.006 33.333 0.00 0.00 39.65 2.71
390 391 7.373617 AGGGTAAATCAACCTTTCAAACATT 57.626 32.000 0.00 0.00 39.65 2.71
391 392 7.801104 AGGGTAAATCAACCTTTCAAACATTT 58.199 30.769 0.00 0.00 39.65 2.32
392 393 7.931407 AGGGTAAATCAACCTTTCAAACATTTC 59.069 33.333 0.00 0.00 39.65 2.17
393 394 7.713073 GGGTAAATCAACCTTTCAAACATTTCA 59.287 33.333 0.00 0.00 39.65 2.69
394 395 9.271828 GGTAAATCAACCTTTCAAACATTTCAT 57.728 29.630 0.00 0.00 36.53 2.57
397 398 8.735692 AATCAACCTTTCAAACATTTCATTGT 57.264 26.923 0.00 0.00 0.00 2.71
398 399 7.769272 TCAACCTTTCAAACATTTCATTGTC 57.231 32.000 0.00 0.00 0.00 3.18
399 400 7.555087 TCAACCTTTCAAACATTTCATTGTCT 58.445 30.769 0.00 0.00 0.00 3.41
400 401 7.706179 TCAACCTTTCAAACATTTCATTGTCTC 59.294 33.333 0.00 0.00 0.00 3.36
401 402 6.515832 ACCTTTCAAACATTTCATTGTCTCC 58.484 36.000 0.00 0.00 0.00 3.71
402 403 6.098124 ACCTTTCAAACATTTCATTGTCTCCA 59.902 34.615 0.00 0.00 0.00 3.86
422 423 3.016736 CACCCCGCATAACTTCTTGAAT 58.983 45.455 0.00 0.00 0.00 2.57
819 820 7.644157 GGCGCTAATTCACTTCTTTTTAATAGG 59.356 37.037 7.64 0.00 0.00 2.57
1016 1018 5.348179 CCAATTGCATGCGTCTAATCAAAAA 59.652 36.000 14.09 0.00 0.00 1.94
1138 1140 5.173774 TCGCAAATCCAAATCTGCTAATC 57.826 39.130 0.00 0.00 32.52 1.75
1190 1192 4.839668 TTTCCCGATTTCGAAATGTTGT 57.160 36.364 27.27 4.20 43.02 3.32
1270 1275 8.080417 CCTCTTCGAATAAACCTCGTAATCATA 58.920 37.037 0.00 0.00 37.56 2.15
1315 1322 3.270877 GGCCTAGCAAAAGAGAAATCGA 58.729 45.455 0.00 0.00 0.00 3.59
1387 1394 5.857517 GCGATATAACTAGGAAGACCTTTCG 59.142 44.000 0.00 0.00 45.36 3.46
1471 1478 4.469945 TCCGAGAATCCACAAATTCTACCT 59.530 41.667 0.00 0.00 44.16 3.08
1488 1495 2.209273 ACCTCGCATTTTTGGCAAAAC 58.791 42.857 24.04 12.50 34.63 2.43
1534 1541 0.179215 CGCTCGAGAATTGCCACAAC 60.179 55.000 18.75 0.00 0.00 3.32
1544 1551 1.112315 TTGCCACAACCGCAAATCCT 61.112 50.000 0.00 0.00 43.00 3.24
1577 1584 4.229876 GGTCCAAAGATTCTTTCGCAAAG 58.770 43.478 8.71 0.00 39.88 2.77
1700 1707 5.093677 AGCCTTTATTTGTTGAGGGGAAAT 58.906 37.500 0.00 0.00 0.00 2.17
1872 1879 1.736126 TCGTAGTTCTCGAACGAGCAT 59.264 47.619 17.71 9.33 45.50 3.79
2111 2118 2.022918 AGTGAGTAGGGCCCAGTAGAAT 60.023 50.000 27.56 2.98 0.00 2.40
2205 2212 1.128188 AAGGGGTCGCCTGTTCTTCT 61.128 55.000 9.61 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.951558 ATCGAAAACTTTGCACGCCT 59.048 45.000 0.00 0.00 0.00 5.52
1 2 1.766069 AATCGAAAACTTTGCACGCC 58.234 45.000 0.00 0.00 0.00 5.68
2 3 2.786578 TCAAATCGAAAACTTTGCACGC 59.213 40.909 4.66 0.00 33.40 5.34
3 4 5.172951 TGATTCAAATCGAAAACTTTGCACG 59.827 36.000 4.66 0.00 37.12 5.34
4 5 6.509317 TGATTCAAATCGAAAACTTTGCAC 57.491 33.333 4.66 0.92 37.12 4.57
5 6 7.531280 TTTGATTCAAATCGAAAACTTTGCA 57.469 28.000 7.74 0.00 36.20 4.08
6 7 8.992287 ATTTTGATTCAAATCGAAAACTTTGC 57.008 26.923 17.71 0.00 46.38 3.68
41 42 9.964354 CCATGACAGGGATAAATATGAGATAAA 57.036 33.333 0.00 0.00 0.00 1.40
42 43 9.337714 TCCATGACAGGGATAAATATGAGATAA 57.662 33.333 4.32 0.00 0.00 1.75
43 44 8.915813 TCCATGACAGGGATAAATATGAGATA 57.084 34.615 4.32 0.00 0.00 1.98
44 45 7.819521 TCCATGACAGGGATAAATATGAGAT 57.180 36.000 4.32 0.00 0.00 2.75
45 46 7.819521 ATCCATGACAGGGATAAATATGAGA 57.180 36.000 19.84 0.00 43.27 3.27
46 47 8.105197 TGAATCCATGACAGGGATAAATATGAG 58.895 37.037 21.37 0.00 44.30 2.90
47 48 7.987820 TGAATCCATGACAGGGATAAATATGA 58.012 34.615 21.37 0.00 44.30 2.15
48 49 7.148120 GCTGAATCCATGACAGGGATAAATATG 60.148 40.741 21.37 10.08 44.30 1.78
49 50 6.888632 GCTGAATCCATGACAGGGATAAATAT 59.111 38.462 21.37 6.03 44.30 1.28
50 51 6.183361 TGCTGAATCCATGACAGGGATAAATA 60.183 38.462 21.37 7.93 44.30 1.40
51 52 5.075493 GCTGAATCCATGACAGGGATAAAT 58.925 41.667 21.37 6.79 44.30 1.40
52 53 4.079844 TGCTGAATCCATGACAGGGATAAA 60.080 41.667 21.37 11.85 44.30 1.40
53 54 3.459227 TGCTGAATCCATGACAGGGATAA 59.541 43.478 21.37 12.18 44.30 1.75
54 55 3.047857 TGCTGAATCCATGACAGGGATA 58.952 45.455 21.37 6.74 44.30 2.59
56 57 1.211212 CTGCTGAATCCATGACAGGGA 59.789 52.381 11.94 11.94 39.14 4.20
57 58 1.676746 CTGCTGAATCCATGACAGGG 58.323 55.000 0.00 0.00 33.00 4.45
58 59 1.676746 CCTGCTGAATCCATGACAGG 58.323 55.000 0.00 0.00 38.81 4.00
59 60 2.414994 ACCTGCTGAATCCATGACAG 57.585 50.000 0.00 0.00 35.14 3.51
60 61 2.840038 ACTACCTGCTGAATCCATGACA 59.160 45.455 0.00 0.00 0.00 3.58
61 62 3.550437 ACTACCTGCTGAATCCATGAC 57.450 47.619 0.00 0.00 0.00 3.06
62 63 3.519107 TGAACTACCTGCTGAATCCATGA 59.481 43.478 0.00 0.00 0.00 3.07
63 64 3.877559 TGAACTACCTGCTGAATCCATG 58.122 45.455 0.00 0.00 0.00 3.66
64 65 4.785346 ATGAACTACCTGCTGAATCCAT 57.215 40.909 0.00 0.00 0.00 3.41
65 66 5.692115 TTATGAACTACCTGCTGAATCCA 57.308 39.130 0.00 0.00 0.00 3.41
66 67 5.049129 GCATTATGAACTACCTGCTGAATCC 60.049 44.000 0.00 0.00 0.00 3.01
67 68 5.528690 TGCATTATGAACTACCTGCTGAATC 59.471 40.000 0.00 0.00 0.00 2.52
68 69 5.439721 TGCATTATGAACTACCTGCTGAAT 58.560 37.500 0.00 0.00 0.00 2.57
69 70 4.842574 TGCATTATGAACTACCTGCTGAA 58.157 39.130 0.00 0.00 0.00 3.02
70 71 4.486125 TGCATTATGAACTACCTGCTGA 57.514 40.909 0.00 0.00 0.00 4.26
71 72 4.084171 CGATGCATTATGAACTACCTGCTG 60.084 45.833 0.00 0.00 0.00 4.41
72 73 4.060900 CGATGCATTATGAACTACCTGCT 58.939 43.478 0.00 0.00 0.00 4.24
73 74 3.187227 CCGATGCATTATGAACTACCTGC 59.813 47.826 0.00 0.00 0.00 4.85
74 75 4.380531 ACCGATGCATTATGAACTACCTG 58.619 43.478 0.00 0.00 0.00 4.00
75 76 4.689612 ACCGATGCATTATGAACTACCT 57.310 40.909 0.00 0.00 0.00 3.08
76 77 4.929808 CCTACCGATGCATTATGAACTACC 59.070 45.833 0.00 0.00 0.00 3.18
77 78 4.929808 CCCTACCGATGCATTATGAACTAC 59.070 45.833 0.00 0.00 0.00 2.73
78 79 4.020573 CCCCTACCGATGCATTATGAACTA 60.021 45.833 0.00 0.00 0.00 2.24
79 80 3.244561 CCCCTACCGATGCATTATGAACT 60.245 47.826 0.00 0.00 0.00 3.01
80 81 3.074412 CCCCTACCGATGCATTATGAAC 58.926 50.000 0.00 0.00 0.00 3.18
81 82 2.976185 TCCCCTACCGATGCATTATGAA 59.024 45.455 0.00 0.00 0.00 2.57
82 83 2.567169 CTCCCCTACCGATGCATTATGA 59.433 50.000 0.00 0.00 0.00 2.15
83 84 2.936993 GCTCCCCTACCGATGCATTATG 60.937 54.545 0.00 0.00 0.00 1.90
84 85 1.279271 GCTCCCCTACCGATGCATTAT 59.721 52.381 0.00 0.00 0.00 1.28
85 86 0.685097 GCTCCCCTACCGATGCATTA 59.315 55.000 0.00 0.00 0.00 1.90
86 87 1.451936 GCTCCCCTACCGATGCATT 59.548 57.895 0.00 0.00 0.00 3.56
87 88 2.872388 CGCTCCCCTACCGATGCAT 61.872 63.158 0.00 0.00 0.00 3.96
88 89 3.536917 CGCTCCCCTACCGATGCA 61.537 66.667 0.00 0.00 0.00 3.96
89 90 2.973180 GAACGCTCCCCTACCGATGC 62.973 65.000 0.00 0.00 0.00 3.91
90 91 1.067582 GAACGCTCCCCTACCGATG 59.932 63.158 0.00 0.00 0.00 3.84
91 92 2.132352 GGAACGCTCCCCTACCGAT 61.132 63.158 0.00 0.00 35.42 4.18
92 93 2.757099 GGAACGCTCCCCTACCGA 60.757 66.667 0.00 0.00 35.42 4.69
105 106 0.462225 GCTTCCCTCTAAGGCGGAAC 60.462 60.000 0.00 0.00 32.73 3.62
106 107 0.907704 TGCTTCCCTCTAAGGCGGAA 60.908 55.000 0.00 0.00 32.73 4.30
107 108 0.907704 TTGCTTCCCTCTAAGGCGGA 60.908 55.000 0.00 0.00 32.73 5.54
108 109 0.744771 GTTGCTTCCCTCTAAGGCGG 60.745 60.000 0.00 0.00 32.73 6.13
109 110 0.744771 GGTTGCTTCCCTCTAAGGCG 60.745 60.000 0.00 0.00 32.73 5.52
110 111 0.328258 TGGTTGCTTCCCTCTAAGGC 59.672 55.000 0.00 0.00 32.73 4.35
111 112 1.676014 CGTGGTTGCTTCCCTCTAAGG 60.676 57.143 0.00 0.00 34.30 2.69
112 113 1.275291 TCGTGGTTGCTTCCCTCTAAG 59.725 52.381 0.00 0.00 0.00 2.18
113 114 1.344065 TCGTGGTTGCTTCCCTCTAA 58.656 50.000 0.00 0.00 0.00 2.10
114 115 1.344065 TTCGTGGTTGCTTCCCTCTA 58.656 50.000 0.00 0.00 0.00 2.43
115 116 0.472471 TTTCGTGGTTGCTTCCCTCT 59.528 50.000 0.00 0.00 0.00 3.69
116 117 0.875059 CTTTCGTGGTTGCTTCCCTC 59.125 55.000 0.00 0.00 0.00 4.30
117 118 1.172812 GCTTTCGTGGTTGCTTCCCT 61.173 55.000 0.00 0.00 0.00 4.20
118 119 1.285950 GCTTTCGTGGTTGCTTCCC 59.714 57.895 0.00 0.00 0.00 3.97
119 120 1.082104 CGCTTTCGTGGTTGCTTCC 60.082 57.895 0.00 0.00 0.00 3.46
120 121 1.082104 CCGCTTTCGTGGTTGCTTC 60.082 57.895 0.00 0.00 36.03 3.86
121 122 2.551912 CCCGCTTTCGTGGTTGCTT 61.552 57.895 0.00 0.00 39.22 3.91
122 123 2.978010 CCCGCTTTCGTGGTTGCT 60.978 61.111 0.00 0.00 39.22 3.91
123 124 4.038080 CCCCGCTTTCGTGGTTGC 62.038 66.667 0.00 0.00 39.22 4.17
124 125 3.361977 CCCCCGCTTTCGTGGTTG 61.362 66.667 0.00 0.00 39.22 3.77
125 126 3.837570 GACCCCCGCTTTCGTGGTT 62.838 63.158 0.00 0.00 38.51 3.67
126 127 4.324991 GACCCCCGCTTTCGTGGT 62.325 66.667 0.00 0.00 40.27 4.16
128 129 4.367023 TCGACCCCCGCTTTCGTG 62.367 66.667 0.00 0.00 38.37 4.35
129 130 4.368543 GTCGACCCCCGCTTTCGT 62.369 66.667 3.51 0.00 38.37 3.85
131 132 3.578515 TTCGTCGACCCCCGCTTTC 62.579 63.158 10.58 0.00 38.37 2.62
132 133 3.584868 CTTCGTCGACCCCCGCTTT 62.585 63.158 10.58 0.00 38.37 3.51
133 134 4.065281 CTTCGTCGACCCCCGCTT 62.065 66.667 10.58 0.00 38.37 4.68
138 139 3.984200 CTTCCGCTTCGTCGACCCC 62.984 68.421 10.58 0.00 0.00 4.95
139 140 2.506438 CTTCCGCTTCGTCGACCC 60.506 66.667 10.58 0.00 0.00 4.46
140 141 3.179939 GCTTCCGCTTCGTCGACC 61.180 66.667 10.58 0.00 0.00 4.79
141 142 3.533691 CGCTTCCGCTTCGTCGAC 61.534 66.667 5.18 5.18 0.00 4.20
142 143 3.662623 CTCGCTTCCGCTTCGTCGA 62.663 63.158 0.00 0.00 0.00 4.20
143 144 3.241059 CTCGCTTCCGCTTCGTCG 61.241 66.667 0.00 0.00 0.00 5.12
144 145 0.802607 ATTCTCGCTTCCGCTTCGTC 60.803 55.000 0.00 0.00 0.00 4.20
145 146 1.078759 CATTCTCGCTTCCGCTTCGT 61.079 55.000 0.00 0.00 0.00 3.85
146 147 1.078759 ACATTCTCGCTTCCGCTTCG 61.079 55.000 0.00 0.00 0.00 3.79
147 148 0.647925 GACATTCTCGCTTCCGCTTC 59.352 55.000 0.00 0.00 0.00 3.86
148 149 1.078759 CGACATTCTCGCTTCCGCTT 61.079 55.000 0.00 0.00 35.06 4.68
149 150 1.517257 CGACATTCTCGCTTCCGCT 60.517 57.895 0.00 0.00 35.06 5.52
150 151 2.517450 CCGACATTCTCGCTTCCGC 61.517 63.158 0.00 0.00 41.46 5.54
151 152 2.517450 GCCGACATTCTCGCTTCCG 61.517 63.158 0.00 0.00 41.46 4.30
152 153 0.741221 AAGCCGACATTCTCGCTTCC 60.741 55.000 0.00 0.00 41.46 3.46
153 154 0.371645 CAAGCCGACATTCTCGCTTC 59.628 55.000 0.00 0.00 41.46 3.86
154 155 0.037326 TCAAGCCGACATTCTCGCTT 60.037 50.000 0.00 0.00 41.46 4.68
155 156 0.459237 CTCAAGCCGACATTCTCGCT 60.459 55.000 0.00 0.00 41.46 4.93
156 157 0.737715 ACTCAAGCCGACATTCTCGC 60.738 55.000 0.00 0.00 41.46 5.03
157 158 2.561733 TACTCAAGCCGACATTCTCG 57.438 50.000 0.00 0.00 42.54 4.04
158 159 3.585862 TGTTACTCAAGCCGACATTCTC 58.414 45.455 0.00 0.00 0.00 2.87
159 160 3.678056 TGTTACTCAAGCCGACATTCT 57.322 42.857 0.00 0.00 0.00 2.40
160 161 4.742438 TTTGTTACTCAAGCCGACATTC 57.258 40.909 0.00 0.00 37.35 2.67
161 162 5.163602 TGTTTTTGTTACTCAAGCCGACATT 60.164 36.000 0.00 0.00 37.35 2.71
162 163 4.336993 TGTTTTTGTTACTCAAGCCGACAT 59.663 37.500 0.00 0.00 37.35 3.06
163 164 3.690139 TGTTTTTGTTACTCAAGCCGACA 59.310 39.130 0.00 0.00 37.35 4.35
164 165 4.281525 TGTTTTTGTTACTCAAGCCGAC 57.718 40.909 0.00 0.00 37.35 4.79
165 166 5.277825 CAATGTTTTTGTTACTCAAGCCGA 58.722 37.500 0.00 0.00 37.35 5.54
166 167 4.444056 CCAATGTTTTTGTTACTCAAGCCG 59.556 41.667 0.00 0.00 37.35 5.52
167 168 5.234116 CACCAATGTTTTTGTTACTCAAGCC 59.766 40.000 0.00 0.00 37.35 4.35
168 169 6.039616 TCACCAATGTTTTTGTTACTCAAGC 58.960 36.000 0.00 0.00 37.35 4.01
169 170 7.479980 TCTCACCAATGTTTTTGTTACTCAAG 58.520 34.615 0.00 0.00 37.35 3.02
170 171 7.397892 TCTCACCAATGTTTTTGTTACTCAA 57.602 32.000 0.00 0.00 0.00 3.02
171 172 7.397892 TTCTCACCAATGTTTTTGTTACTCA 57.602 32.000 0.00 0.00 0.00 3.41
172 173 7.595130 GGATTCTCACCAATGTTTTTGTTACTC 59.405 37.037 0.00 0.00 0.00 2.59
173 174 7.069331 TGGATTCTCACCAATGTTTTTGTTACT 59.931 33.333 0.00 0.00 34.25 2.24
174 175 7.206687 TGGATTCTCACCAATGTTTTTGTTAC 58.793 34.615 0.00 0.00 34.25 2.50
175 176 7.353414 TGGATTCTCACCAATGTTTTTGTTA 57.647 32.000 0.00 0.00 34.25 2.41
176 177 6.232581 TGGATTCTCACCAATGTTTTTGTT 57.767 33.333 0.00 0.00 34.25 2.83
177 178 5.867903 TGGATTCTCACCAATGTTTTTGT 57.132 34.783 0.00 0.00 34.25 2.83
187 188 0.033208 GGGGCATTGGATTCTCACCA 60.033 55.000 0.00 0.00 35.47 4.17
188 189 0.033208 TGGGGCATTGGATTCTCACC 60.033 55.000 0.00 0.00 0.00 4.02
189 190 1.851304 TTGGGGCATTGGATTCTCAC 58.149 50.000 0.00 0.00 0.00 3.51
190 191 2.619697 TTTGGGGCATTGGATTCTCA 57.380 45.000 0.00 0.00 0.00 3.27
191 192 3.599343 GTTTTTGGGGCATTGGATTCTC 58.401 45.455 0.00 0.00 0.00 2.87
192 193 2.305635 GGTTTTTGGGGCATTGGATTCT 59.694 45.455 0.00 0.00 0.00 2.40
193 194 2.617788 GGGTTTTTGGGGCATTGGATTC 60.618 50.000 0.00 0.00 0.00 2.52
194 195 1.354031 GGGTTTTTGGGGCATTGGATT 59.646 47.619 0.00 0.00 0.00 3.01
195 196 0.991146 GGGTTTTTGGGGCATTGGAT 59.009 50.000 0.00 0.00 0.00 3.41
196 197 0.400525 TGGGTTTTTGGGGCATTGGA 60.401 50.000 0.00 0.00 0.00 3.53
197 198 0.475906 TTGGGTTTTTGGGGCATTGG 59.524 50.000 0.00 0.00 0.00 3.16
198 199 1.545204 CCTTGGGTTTTTGGGGCATTG 60.545 52.381 0.00 0.00 0.00 2.82
199 200 0.770499 CCTTGGGTTTTTGGGGCATT 59.230 50.000 0.00 0.00 0.00 3.56
200 201 0.401250 ACCTTGGGTTTTTGGGGCAT 60.401 50.000 0.00 0.00 27.29 4.40
201 202 0.621862 AACCTTGGGTTTTTGGGGCA 60.622 50.000 0.00 0.00 44.33 5.36
202 203 2.226764 AACCTTGGGTTTTTGGGGC 58.773 52.632 0.00 0.00 44.33 5.80
211 212 2.002018 TTGCGGAGGAAACCTTGGGT 62.002 55.000 0.00 0.00 32.59 4.51
212 213 1.228429 TTGCGGAGGAAACCTTGGG 60.228 57.895 0.00 0.00 32.59 4.12
213 214 2.257353 CTTGCGGAGGAAACCTTGG 58.743 57.895 0.00 0.00 37.43 3.61
223 224 2.027625 GTGGACGAACCTTGCGGAG 61.028 63.158 0.00 0.00 39.86 4.63
224 225 2.029964 GTGGACGAACCTTGCGGA 59.970 61.111 0.00 0.00 39.86 5.54
225 226 3.411351 CGTGGACGAACCTTGCGG 61.411 66.667 0.00 0.00 43.02 5.69
226 227 3.411351 CCGTGGACGAACCTTGCG 61.411 66.667 0.00 0.00 43.02 4.85
227 228 2.027625 CTCCGTGGACGAACCTTGC 61.028 63.158 0.00 0.00 43.02 4.01
228 229 1.374252 CCTCCGTGGACGAACCTTG 60.374 63.158 0.00 0.00 43.02 3.61
229 230 2.580601 CCCTCCGTGGACGAACCTT 61.581 63.158 0.00 0.00 43.02 3.50
230 231 2.995574 CCCTCCGTGGACGAACCT 60.996 66.667 0.00 0.00 43.02 3.50
231 232 3.308705 ACCCTCCGTGGACGAACC 61.309 66.667 0.00 0.00 43.02 3.62
232 233 2.048503 CACCCTCCGTGGACGAAC 60.049 66.667 0.00 0.00 43.02 3.95
233 234 2.203523 TCACCCTCCGTGGACGAA 60.204 61.111 0.00 0.00 43.23 3.85
234 235 2.675423 CTCACCCTCCGTGGACGA 60.675 66.667 0.00 0.00 43.23 4.20
235 236 2.989824 ACTCACCCTCCGTGGACG 60.990 66.667 0.00 0.00 43.23 4.79
236 237 1.878656 CTGACTCACCCTCCGTGGAC 61.879 65.000 0.00 0.00 43.23 4.02
237 238 1.606601 CTGACTCACCCTCCGTGGA 60.607 63.158 0.00 0.00 43.23 4.02
238 239 2.650116 CCTGACTCACCCTCCGTGG 61.650 68.421 0.00 0.00 43.23 4.94
239 240 2.650116 CCCTGACTCACCCTCCGTG 61.650 68.421 0.00 0.00 44.50 4.94
240 241 2.283966 CCCTGACTCACCCTCCGT 60.284 66.667 0.00 0.00 0.00 4.69
241 242 3.775654 GCCCTGACTCACCCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
242 243 2.531483 TAGGCCCTGACTCACCCTCC 62.531 65.000 0.00 0.00 0.00 4.30
243 244 0.617820 TTAGGCCCTGACTCACCCTC 60.618 60.000 0.00 0.00 0.00 4.30
244 245 0.618968 CTTAGGCCCTGACTCACCCT 60.619 60.000 0.00 0.00 0.00 4.34
245 246 0.617820 TCTTAGGCCCTGACTCACCC 60.618 60.000 0.00 0.00 0.00 4.61
246 247 1.414550 GATCTTAGGCCCTGACTCACC 59.585 57.143 0.00 0.00 0.00 4.02
247 248 2.102252 CTGATCTTAGGCCCTGACTCAC 59.898 54.545 0.00 0.00 0.00 3.51
248 249 2.392662 CTGATCTTAGGCCCTGACTCA 58.607 52.381 0.00 0.00 0.00 3.41
249 250 1.691434 CCTGATCTTAGGCCCTGACTC 59.309 57.143 0.00 0.00 0.00 3.36
250 251 1.799933 CCTGATCTTAGGCCCTGACT 58.200 55.000 0.00 0.00 0.00 3.41
258 259 2.246719 CCTTTCGGCCTGATCTTAGG 57.753 55.000 0.00 0.00 40.95 2.69
270 271 0.870307 CCATCGACTACGCCTTTCGG 60.870 60.000 0.00 0.00 43.86 4.30
271 272 0.099968 TCCATCGACTACGCCTTTCG 59.900 55.000 0.00 0.00 45.38 3.46
272 273 1.135199 TGTCCATCGACTACGCCTTTC 60.135 52.381 0.00 0.00 39.94 2.62
273 274 0.892755 TGTCCATCGACTACGCCTTT 59.107 50.000 0.00 0.00 39.94 3.11
274 275 0.892755 TTGTCCATCGACTACGCCTT 59.107 50.000 0.00 0.00 39.94 4.35
275 276 1.067212 GATTGTCCATCGACTACGCCT 59.933 52.381 0.00 0.00 39.94 5.52
276 277 1.067212 AGATTGTCCATCGACTACGCC 59.933 52.381 0.00 0.00 39.94 5.68
277 278 2.033550 AGAGATTGTCCATCGACTACGC 59.966 50.000 0.00 0.00 39.94 4.42
278 279 3.972950 AGAGATTGTCCATCGACTACG 57.027 47.619 0.00 0.00 39.94 3.51
279 280 6.621316 TTCTAGAGATTGTCCATCGACTAC 57.379 41.667 0.00 0.00 39.94 2.73
280 281 7.640597 TTTTCTAGAGATTGTCCATCGACTA 57.359 36.000 0.00 0.00 39.94 2.59
281 282 6.531503 TTTTCTAGAGATTGTCCATCGACT 57.468 37.500 0.00 0.00 39.94 4.18
282 283 6.256757 CCTTTTTCTAGAGATTGTCCATCGAC 59.743 42.308 0.00 0.00 36.93 4.20
283 284 6.341316 CCTTTTTCTAGAGATTGTCCATCGA 58.659 40.000 0.00 0.00 36.93 3.59
284 285 5.007136 GCCTTTTTCTAGAGATTGTCCATCG 59.993 44.000 0.00 0.00 36.93 3.84
285 286 5.882557 TGCCTTTTTCTAGAGATTGTCCATC 59.117 40.000 0.00 0.00 0.00 3.51
286 287 5.819991 TGCCTTTTTCTAGAGATTGTCCAT 58.180 37.500 0.00 0.00 0.00 3.41
287 288 5.241403 TGCCTTTTTCTAGAGATTGTCCA 57.759 39.130 0.00 0.00 0.00 4.02
288 289 6.601217 AGATTGCCTTTTTCTAGAGATTGTCC 59.399 38.462 0.00 0.00 0.00 4.02
289 290 7.622893 AGATTGCCTTTTTCTAGAGATTGTC 57.377 36.000 0.00 0.00 0.00 3.18
290 291 9.520515 TTTAGATTGCCTTTTTCTAGAGATTGT 57.479 29.630 0.00 0.00 0.00 2.71
293 294 9.692325 ACATTTAGATTGCCTTTTTCTAGAGAT 57.308 29.630 0.00 0.00 0.00 2.75
294 295 9.520515 AACATTTAGATTGCCTTTTTCTAGAGA 57.479 29.630 0.00 0.00 0.00 3.10
295 296 9.780413 GAACATTTAGATTGCCTTTTTCTAGAG 57.220 33.333 0.00 0.00 0.00 2.43
296 297 8.450964 CGAACATTTAGATTGCCTTTTTCTAGA 58.549 33.333 0.00 0.00 0.00 2.43
297 298 8.237267 ACGAACATTTAGATTGCCTTTTTCTAG 58.763 33.333 0.00 0.00 0.00 2.43
298 299 8.106247 ACGAACATTTAGATTGCCTTTTTCTA 57.894 30.769 0.00 0.00 0.00 2.10
299 300 6.981722 ACGAACATTTAGATTGCCTTTTTCT 58.018 32.000 0.00 0.00 0.00 2.52
300 301 7.381139 TGAACGAACATTTAGATTGCCTTTTTC 59.619 33.333 0.00 0.00 0.00 2.29
301 302 7.169140 GTGAACGAACATTTAGATTGCCTTTTT 59.831 33.333 0.00 0.00 0.00 1.94
302 303 6.640907 GTGAACGAACATTTAGATTGCCTTTT 59.359 34.615 0.00 0.00 0.00 2.27
303 304 6.149633 GTGAACGAACATTTAGATTGCCTTT 58.850 36.000 0.00 0.00 0.00 3.11
304 305 5.616866 CGTGAACGAACATTTAGATTGCCTT 60.617 40.000 0.00 0.00 43.02 4.35
305 306 4.142902 CGTGAACGAACATTTAGATTGCCT 60.143 41.667 0.00 0.00 43.02 4.75
306 307 4.088648 CGTGAACGAACATTTAGATTGCC 58.911 43.478 0.00 0.00 43.02 4.52
307 308 4.953269 TCGTGAACGAACATTTAGATTGC 58.047 39.130 2.48 0.00 46.30 3.56
321 322 7.552848 AAAGAATGAATTTGATTCGTGAACG 57.447 32.000 3.41 0.00 42.15 3.95
344 345 7.956881 ACCCTATTTGTAACCCCTAATGAAAAA 59.043 33.333 0.00 0.00 0.00 1.94
345 346 7.480437 ACCCTATTTGTAACCCCTAATGAAAA 58.520 34.615 0.00 0.00 0.00 2.29
346 347 7.046891 ACCCTATTTGTAACCCCTAATGAAA 57.953 36.000 0.00 0.00 0.00 2.69
347 348 6.661740 ACCCTATTTGTAACCCCTAATGAA 57.338 37.500 0.00 0.00 0.00 2.57
348 349 7.768324 TTACCCTATTTGTAACCCCTAATGA 57.232 36.000 0.00 0.00 0.00 2.57
349 350 9.074576 GATTTACCCTATTTGTAACCCCTAATG 57.925 37.037 0.00 0.00 0.00 1.90
350 351 8.793720 TGATTTACCCTATTTGTAACCCCTAAT 58.206 33.333 0.00 0.00 0.00 1.73
351 352 8.172555 TGATTTACCCTATTTGTAACCCCTAA 57.827 34.615 0.00 0.00 0.00 2.69
352 353 7.768324 TGATTTACCCTATTTGTAACCCCTA 57.232 36.000 0.00 0.00 0.00 3.53
353 354 6.661740 TGATTTACCCTATTTGTAACCCCT 57.338 37.500 0.00 0.00 0.00 4.79
354 355 6.097270 GGTTGATTTACCCTATTTGTAACCCC 59.903 42.308 0.00 0.00 31.71 4.95
355 356 6.893554 AGGTTGATTTACCCTATTTGTAACCC 59.106 38.462 0.00 0.00 39.08 4.11
356 357 7.949690 AGGTTGATTTACCCTATTTGTAACC 57.050 36.000 0.00 0.00 39.08 2.85
357 358 9.850628 GAAAGGTTGATTTACCCTATTTGTAAC 57.149 33.333 0.00 0.00 39.08 2.50
358 359 9.589461 TGAAAGGTTGATTTACCCTATTTGTAA 57.411 29.630 0.00 0.00 39.08 2.41
359 360 9.589461 TTGAAAGGTTGATTTACCCTATTTGTA 57.411 29.630 0.00 0.00 39.08 2.41
360 361 8.485578 TTGAAAGGTTGATTTACCCTATTTGT 57.514 30.769 0.00 0.00 39.08 2.83
361 362 9.203421 GTTTGAAAGGTTGATTTACCCTATTTG 57.797 33.333 0.00 0.00 39.08 2.32
362 363 8.929487 TGTTTGAAAGGTTGATTTACCCTATTT 58.071 29.630 0.00 0.00 39.08 1.40
363 364 8.485578 TGTTTGAAAGGTTGATTTACCCTATT 57.514 30.769 0.00 0.00 39.08 1.73
364 365 8.664669 ATGTTTGAAAGGTTGATTTACCCTAT 57.335 30.769 0.00 0.00 39.08 2.57
365 366 8.485578 AATGTTTGAAAGGTTGATTTACCCTA 57.514 30.769 0.00 0.00 39.08 3.53
366 367 6.994421 ATGTTTGAAAGGTTGATTTACCCT 57.006 33.333 0.00 0.00 39.08 4.34
367 368 7.713073 TGAAATGTTTGAAAGGTTGATTTACCC 59.287 33.333 0.00 0.00 39.08 3.69
368 369 8.655651 TGAAATGTTTGAAAGGTTGATTTACC 57.344 30.769 0.00 0.00 38.53 2.85
371 372 9.176460 ACAATGAAATGTTTGAAAGGTTGATTT 57.824 25.926 0.00 0.00 0.00 2.17
372 373 8.735692 ACAATGAAATGTTTGAAAGGTTGATT 57.264 26.923 0.00 0.00 0.00 2.57
373 374 8.206189 AGACAATGAAATGTTTGAAAGGTTGAT 58.794 29.630 0.00 0.00 32.57 2.57
374 375 7.555087 AGACAATGAAATGTTTGAAAGGTTGA 58.445 30.769 0.00 0.00 32.57 3.18
375 376 7.042523 GGAGACAATGAAATGTTTGAAAGGTTG 60.043 37.037 0.00 0.00 32.57 3.77
376 377 6.986231 GGAGACAATGAAATGTTTGAAAGGTT 59.014 34.615 0.00 0.00 32.57 3.50
377 378 6.098124 TGGAGACAATGAAATGTTTGAAAGGT 59.902 34.615 0.00 0.00 37.44 3.50
378 379 6.421801 GTGGAGACAATGAAATGTTTGAAAGG 59.578 38.462 0.00 0.00 46.06 3.11
379 380 6.421801 GGTGGAGACAATGAAATGTTTGAAAG 59.578 38.462 0.00 0.00 46.06 2.62
380 381 6.279882 GGTGGAGACAATGAAATGTTTGAAA 58.720 36.000 0.00 0.00 46.06 2.69
381 382 5.221422 GGGTGGAGACAATGAAATGTTTGAA 60.221 40.000 0.00 0.00 46.06 2.69
382 383 4.280677 GGGTGGAGACAATGAAATGTTTGA 59.719 41.667 0.00 0.00 46.06 2.69
383 384 4.559153 GGGTGGAGACAATGAAATGTTTG 58.441 43.478 0.00 0.00 46.06 2.93
384 385 3.578282 GGGGTGGAGACAATGAAATGTTT 59.422 43.478 0.00 0.00 46.06 2.83
385 386 3.165071 GGGGTGGAGACAATGAAATGTT 58.835 45.455 0.00 0.00 46.06 2.71
386 387 2.807676 GGGGTGGAGACAATGAAATGT 58.192 47.619 0.00 0.00 46.06 2.71
387 388 1.745087 CGGGGTGGAGACAATGAAATG 59.255 52.381 0.00 0.00 46.06 2.32
388 389 1.955208 GCGGGGTGGAGACAATGAAAT 60.955 52.381 0.00 0.00 46.06 2.17
389 390 0.608035 GCGGGGTGGAGACAATGAAA 60.608 55.000 0.00 0.00 46.06 2.69
390 391 1.002624 GCGGGGTGGAGACAATGAA 60.003 57.895 0.00 0.00 46.06 2.57
391 392 1.561769 ATGCGGGGTGGAGACAATGA 61.562 55.000 0.00 0.00 46.06 2.57
392 393 0.180171 TATGCGGGGTGGAGACAATG 59.820 55.000 0.00 0.00 46.06 2.82
393 394 0.916086 TTATGCGGGGTGGAGACAAT 59.084 50.000 0.00 0.00 46.06 2.71
394 395 0.035820 GTTATGCGGGGTGGAGACAA 60.036 55.000 0.00 0.00 46.06 3.18
395 396 0.907704 AGTTATGCGGGGTGGAGACA 60.908 55.000 0.00 0.00 38.70 3.41
396 397 0.252197 AAGTTATGCGGGGTGGAGAC 59.748 55.000 0.00 0.00 0.00 3.36
397 398 0.539986 GAAGTTATGCGGGGTGGAGA 59.460 55.000 0.00 0.00 0.00 3.71
398 399 0.541863 AGAAGTTATGCGGGGTGGAG 59.458 55.000 0.00 0.00 0.00 3.86
399 400 0.988832 AAGAAGTTATGCGGGGTGGA 59.011 50.000 0.00 0.00 0.00 4.02
400 401 1.094785 CAAGAAGTTATGCGGGGTGG 58.905 55.000 0.00 0.00 0.00 4.61
401 402 2.107950 TCAAGAAGTTATGCGGGGTG 57.892 50.000 0.00 0.00 0.00 4.61
402 403 2.871096 TTCAAGAAGTTATGCGGGGT 57.129 45.000 0.00 0.00 0.00 4.95
575 576 3.157087 GTCATTGTTGTGGGTCCTTCAT 58.843 45.455 0.00 0.00 0.00 2.57
576 577 2.092158 TGTCATTGTTGTGGGTCCTTCA 60.092 45.455 0.00 0.00 0.00 3.02
695 696 2.588877 CGATGCGGGATGGTCACC 60.589 66.667 0.00 0.00 0.00 4.02
722 723 3.521727 ACACTTCTTGATAGTGGGTCCT 58.478 45.455 7.78 0.00 45.67 3.85
819 820 3.071479 TCGGAACAACAATCTTGCCTAC 58.929 45.455 0.00 0.00 0.00 3.18
991 992 3.016031 TGATTAGACGCATGCAATTGGT 58.984 40.909 19.57 6.70 0.00 3.67
1047 1049 3.467483 AGGGGTATAGTGGAGATGAGTGA 59.533 47.826 0.00 0.00 0.00 3.41
1315 1322 2.091444 AGTTGGAGGGCCTAGTATACGT 60.091 50.000 5.73 0.00 34.31 3.57
1387 1394 2.930040 CCGTGACTCATGTGTGGTATTC 59.070 50.000 4.90 0.00 0.00 1.75
1471 1478 2.611225 AGGTTTTGCCAAAAATGCGA 57.389 40.000 3.79 0.00 37.59 5.10
1488 1495 2.544267 AGCTGAAAACGAAGACGAAAGG 59.456 45.455 0.00 0.00 42.66 3.11
1544 1551 5.779771 AGAATCTTTGGACCCATAAAAAGCA 59.220 36.000 0.00 0.00 31.20 3.91
1577 1584 6.473455 CGATAAACCAGAAAAAGATGGATTGC 59.527 38.462 0.00 0.00 39.02 3.56
1700 1707 6.096705 ACATCAACAACTTCAAATTGGACTCA 59.903 34.615 0.00 0.00 0.00 3.41
1872 1879 4.471386 AGGATCCTCCAGAATCTTTTCGAA 59.529 41.667 9.02 0.00 39.61 3.71
2111 2118 4.773674 AGTTGATGAGAAAATTCATGGGCA 59.226 37.500 0.00 0.00 37.90 5.36
2166 2173 5.123979 CCCTTTGAGCAACCTGTTCTAATAC 59.876 44.000 0.00 0.00 0.00 1.89
2205 2212 5.534654 CCCGGGAAAAGCAGAATATTTGATA 59.465 40.000 18.48 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.