Multiple sequence alignment - TraesCS5D01G220800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G220800 chr5D 100.000 2117 0 0 1 2117 329131837 329133953 0 3910
1 TraesCS5D01G220800 chr6D 97.367 2013 29 7 1 2008 431399897 431397904 0 3402
2 TraesCS5D01G220800 chr2D 97.367 2013 25 6 1 2008 628285536 628283547 0 3398
3 TraesCS5D01G220800 chr2D 96.996 1831 40 9 3 1830 334225790 334223972 0 3062
4 TraesCS5D01G220800 chr1D 97.167 2012 37 6 1 2008 254489568 254487573 0 3382
5 TraesCS5D01G220800 chr1D 94.439 1924 73 12 90 2008 244401944 244400050 0 2929
6 TraesCS5D01G220800 chr1D 97.533 1216 20 4 1 1214 394178777 394177570 0 2071
7 TraesCS5D01G220800 chr3D 96.867 2011 42 7 1 2008 21897426 21895434 0 3345
8 TraesCS5D01G220800 chr2A 96.571 2012 57 5 1 2008 276441206 276443209 0 3323
9 TraesCS5D01G220800 chr2A 95.844 1997 56 8 1 1994 335826146 335824174 0 3203
10 TraesCS5D01G220800 chr3B 96.576 2015 45 8 4 2008 201506443 201504443 0 3317
11 TraesCS5D01G220800 chrUn 97.246 581 9 1 1 581 317473323 317473896 0 977
12 TraesCS5D01G220800 chr7D 95.661 484 17 3 1 481 88605455 88604973 0 774


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G220800 chr5D 329131837 329133953 2116 False 3910 3910 100.000 1 2117 1 chr5D.!!$F1 2116
1 TraesCS5D01G220800 chr6D 431397904 431399897 1993 True 3402 3402 97.367 1 2008 1 chr6D.!!$R1 2007
2 TraesCS5D01G220800 chr2D 628283547 628285536 1989 True 3398 3398 97.367 1 2008 1 chr2D.!!$R2 2007
3 TraesCS5D01G220800 chr2D 334223972 334225790 1818 True 3062 3062 96.996 3 1830 1 chr2D.!!$R1 1827
4 TraesCS5D01G220800 chr1D 254487573 254489568 1995 True 3382 3382 97.167 1 2008 1 chr1D.!!$R2 2007
5 TraesCS5D01G220800 chr1D 244400050 244401944 1894 True 2929 2929 94.439 90 2008 1 chr1D.!!$R1 1918
6 TraesCS5D01G220800 chr1D 394177570 394178777 1207 True 2071 2071 97.533 1 1214 1 chr1D.!!$R3 1213
7 TraesCS5D01G220800 chr3D 21895434 21897426 1992 True 3345 3345 96.867 1 2008 1 chr3D.!!$R1 2007
8 TraesCS5D01G220800 chr2A 276441206 276443209 2003 False 3323 3323 96.571 1 2008 1 chr2A.!!$F1 2007
9 TraesCS5D01G220800 chr2A 335824174 335826146 1972 True 3203 3203 95.844 1 1994 1 chr2A.!!$R1 1993
10 TraesCS5D01G220800 chr3B 201504443 201506443 2000 True 3317 3317 96.576 4 2008 1 chr3B.!!$R1 2004
11 TraesCS5D01G220800 chrUn 317473323 317473896 573 False 977 977 97.246 1 581 1 chrUn.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 934 0.816825 AGTGCGATGGCTGGCTATTG 60.817 55.0 0.15 2.37 40.82 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2116 0.24746 TGGGAGAGAACATGCAGTCG 59.753 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
341 343 5.199982 TGGGGTTTTCTATTGATGCCTTA 57.800 39.130 0.00 0.00 0.00 2.69
800 824 6.117488 ACAAGGAATTCCGTTAATAACCGAT 58.883 36.000 18.82 0.00 42.08 4.18
842 866 9.302345 GAACAACTCGATGAATTTAGTAGATCA 57.698 33.333 0.00 0.00 0.00 2.92
844 868 9.469807 ACAACTCGATGAATTTAGTAGATCATC 57.530 33.333 0.00 4.87 42.91 2.92
910 934 0.816825 AGTGCGATGGCTGGCTATTG 60.817 55.000 0.15 2.37 40.82 1.90
972 997 3.093814 TCAGCAATGCAGTTCATCCAAT 58.906 40.909 8.35 0.00 33.40 3.16
1017 1042 6.126863 AGAACTATGACAGAATCAAACCCA 57.873 37.500 0.00 0.00 41.93 4.51
1211 1237 4.973168 TGTTTTTGTCTCTAGCATGACCT 58.027 39.130 0.00 0.00 32.67 3.85
1361 1388 7.513781 TCATATTCTGGATTGGGTTCATCTCTA 59.486 37.037 0.00 0.00 0.00 2.43
1362 1389 6.776887 ATTCTGGATTGGGTTCATCTCTAT 57.223 37.500 0.00 0.00 0.00 1.98
1363 1390 7.878621 ATTCTGGATTGGGTTCATCTCTATA 57.121 36.000 0.00 0.00 0.00 1.31
1364 1391 6.924913 TCTGGATTGGGTTCATCTCTATAG 57.075 41.667 0.00 0.00 0.00 1.31
1365 1392 6.385443 TCTGGATTGGGTTCATCTCTATAGT 58.615 40.000 0.00 0.00 0.00 2.12
1366 1393 7.535738 TCTGGATTGGGTTCATCTCTATAGTA 58.464 38.462 0.00 0.00 0.00 1.82
1543 1570 5.066968 AGAAAAAGAGATCACTCGAGGAC 57.933 43.478 18.41 4.93 46.64 3.85
1851 1892 3.933332 CCAAGAGACAGACCCGAATAAAC 59.067 47.826 0.00 0.00 0.00 2.01
2023 2064 9.581289 TTTTATTGTTCCATCTTCTTAACCTGA 57.419 29.630 0.00 0.00 0.00 3.86
2024 2065 9.581289 TTTATTGTTCCATCTTCTTAACCTGAA 57.419 29.630 0.00 0.00 0.00 3.02
2025 2066 9.581289 TTATTGTTCCATCTTCTTAACCTGAAA 57.419 29.630 0.00 0.00 0.00 2.69
2026 2067 7.510549 TTGTTCCATCTTCTTAACCTGAAAG 57.489 36.000 0.00 0.00 0.00 2.62
2048 2089 9.490663 GAAAGGAAAGTGAATCAATAATGTACG 57.509 33.333 0.00 0.00 0.00 3.67
2049 2090 7.553881 AGGAAAGTGAATCAATAATGTACGG 57.446 36.000 0.00 0.00 0.00 4.02
2050 2091 6.038271 AGGAAAGTGAATCAATAATGTACGGC 59.962 38.462 0.00 0.00 0.00 5.68
2051 2092 6.038271 GGAAAGTGAATCAATAATGTACGGCT 59.962 38.462 0.00 0.00 0.00 5.52
2052 2093 7.225931 GGAAAGTGAATCAATAATGTACGGCTA 59.774 37.037 0.00 0.00 0.00 3.93
2053 2094 7.715265 AAGTGAATCAATAATGTACGGCTAG 57.285 36.000 0.00 0.00 0.00 3.42
2054 2095 5.696724 AGTGAATCAATAATGTACGGCTAGC 59.303 40.000 6.04 6.04 0.00 3.42
2055 2096 5.465390 GTGAATCAATAATGTACGGCTAGCA 59.535 40.000 18.24 0.00 0.00 3.49
2056 2097 6.147821 GTGAATCAATAATGTACGGCTAGCAT 59.852 38.462 18.24 6.50 0.00 3.79
2057 2098 6.147656 TGAATCAATAATGTACGGCTAGCATG 59.852 38.462 18.24 10.92 0.00 4.06
2058 2099 5.208463 TCAATAATGTACGGCTAGCATGA 57.792 39.130 18.24 0.00 0.00 3.07
2059 2100 4.988540 TCAATAATGTACGGCTAGCATGAC 59.011 41.667 18.24 10.85 0.00 3.06
2060 2101 1.852942 AATGTACGGCTAGCATGACG 58.147 50.000 18.24 13.18 45.23 4.35
2069 2110 4.758561 CGGCTAGCATGACGTATTTAAAC 58.241 43.478 18.24 0.00 33.11 2.01
2070 2111 4.506654 CGGCTAGCATGACGTATTTAAACT 59.493 41.667 18.24 0.00 33.11 2.66
2071 2112 5.006358 CGGCTAGCATGACGTATTTAAACTT 59.994 40.000 18.24 0.00 33.11 2.66
2072 2113 6.192360 GGCTAGCATGACGTATTTAAACTTG 58.808 40.000 18.24 0.00 0.00 3.16
2073 2114 6.183360 GGCTAGCATGACGTATTTAAACTTGT 60.183 38.462 18.24 0.00 0.00 3.16
2074 2115 6.900299 GCTAGCATGACGTATTTAAACTTGTC 59.100 38.462 10.63 8.02 0.00 3.18
2075 2116 6.178239 AGCATGACGTATTTAAACTTGTCC 57.822 37.500 0.00 0.45 0.00 4.02
2076 2117 5.019498 GCATGACGTATTTAAACTTGTCCG 58.981 41.667 0.00 5.81 0.00 4.79
2077 2118 5.163933 GCATGACGTATTTAAACTTGTCCGA 60.164 40.000 0.00 0.00 0.00 4.55
2078 2119 5.827568 TGACGTATTTAAACTTGTCCGAC 57.172 39.130 11.04 0.00 0.00 4.79
2079 2120 5.531634 TGACGTATTTAAACTTGTCCGACT 58.468 37.500 11.04 0.00 0.00 4.18
2080 2121 5.403166 TGACGTATTTAAACTTGTCCGACTG 59.597 40.000 11.04 0.00 0.00 3.51
2081 2122 4.151157 ACGTATTTAAACTTGTCCGACTGC 59.849 41.667 0.00 0.00 0.00 4.40
2082 2123 4.150980 CGTATTTAAACTTGTCCGACTGCA 59.849 41.667 0.00 0.00 0.00 4.41
2083 2124 5.163893 CGTATTTAAACTTGTCCGACTGCAT 60.164 40.000 0.00 0.00 0.00 3.96
2084 2125 4.481930 TTTAAACTTGTCCGACTGCATG 57.518 40.909 0.00 0.00 0.00 4.06
2085 2126 1.967319 AAACTTGTCCGACTGCATGT 58.033 45.000 0.00 0.00 0.00 3.21
2086 2127 1.967319 AACTTGTCCGACTGCATGTT 58.033 45.000 0.00 0.00 0.00 2.71
2087 2128 1.512926 ACTTGTCCGACTGCATGTTC 58.487 50.000 0.00 0.00 0.00 3.18
2088 2129 1.070758 ACTTGTCCGACTGCATGTTCT 59.929 47.619 0.00 0.00 0.00 3.01
2089 2130 1.728971 CTTGTCCGACTGCATGTTCTC 59.271 52.381 0.00 0.00 0.00 2.87
2090 2131 0.969149 TGTCCGACTGCATGTTCTCT 59.031 50.000 0.00 0.00 0.00 3.10
2091 2132 1.067565 TGTCCGACTGCATGTTCTCTC 60.068 52.381 0.00 0.00 0.00 3.20
2092 2133 0.532573 TCCGACTGCATGTTCTCTCC 59.467 55.000 0.00 0.00 0.00 3.71
2093 2134 0.460987 CCGACTGCATGTTCTCTCCC 60.461 60.000 0.00 0.00 0.00 4.30
2094 2135 0.247460 CGACTGCATGTTCTCTCCCA 59.753 55.000 0.00 0.00 0.00 4.37
2095 2136 1.338105 CGACTGCATGTTCTCTCCCAA 60.338 52.381 0.00 0.00 0.00 4.12
2096 2137 2.679059 CGACTGCATGTTCTCTCCCAAT 60.679 50.000 0.00 0.00 0.00 3.16
2097 2138 3.350833 GACTGCATGTTCTCTCCCAATT 58.649 45.455 0.00 0.00 0.00 2.32
2098 2139 3.087031 ACTGCATGTTCTCTCCCAATTG 58.913 45.455 0.00 0.00 0.00 2.32
2099 2140 3.245016 ACTGCATGTTCTCTCCCAATTGA 60.245 43.478 7.12 0.00 0.00 2.57
2100 2141 3.952323 CTGCATGTTCTCTCCCAATTGAT 59.048 43.478 7.12 0.00 0.00 2.57
2101 2142 5.114764 TGCATGTTCTCTCCCAATTGATA 57.885 39.130 7.12 0.00 0.00 2.15
2102 2143 4.883585 TGCATGTTCTCTCCCAATTGATAC 59.116 41.667 7.12 0.00 0.00 2.24
2103 2144 4.276926 GCATGTTCTCTCCCAATTGATACC 59.723 45.833 7.12 0.00 0.00 2.73
2104 2145 4.503714 TGTTCTCTCCCAATTGATACCC 57.496 45.455 7.12 0.00 0.00 3.69
2105 2146 3.849574 TGTTCTCTCCCAATTGATACCCA 59.150 43.478 7.12 0.00 0.00 4.51
2106 2147 4.290985 TGTTCTCTCCCAATTGATACCCAA 59.709 41.667 7.12 0.00 39.41 4.12
2107 2148 5.044179 TGTTCTCTCCCAATTGATACCCAAT 60.044 40.000 7.12 0.00 46.86 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.818644 CGAGATGAAATAGGGAAAGACAGAAA 59.181 38.462 0.00 0.00 0.00 2.52
385 408 7.062488 GCGTGGTTCCGAAACATAATTATTTTT 59.938 33.333 8.91 8.91 37.10 1.94
386 409 6.528774 GCGTGGTTCCGAAACATAATTATTTT 59.471 34.615 1.33 0.97 37.10 1.82
387 410 6.031471 GCGTGGTTCCGAAACATAATTATTT 58.969 36.000 1.33 0.00 37.10 1.40
388 411 5.124138 TGCGTGGTTCCGAAACATAATTATT 59.876 36.000 1.33 0.00 37.10 1.40
389 412 4.636648 TGCGTGGTTCCGAAACATAATTAT 59.363 37.500 1.33 0.00 37.10 1.28
539 563 6.693315 GGAATTGATTCCGTAAAAGATGGA 57.307 37.500 6.98 0.00 46.01 3.41
800 824 7.223193 TCGAGTTGTTCTAAAGAATCAAAACGA 59.777 33.333 18.64 18.64 35.73 3.85
842 866 2.708325 GTCATTGAGGGCCTCCTAAGAT 59.292 50.000 30.03 13.23 45.05 2.40
844 868 1.141858 GGTCATTGAGGGCCTCCTAAG 59.858 57.143 30.03 17.00 45.05 2.18
910 934 2.613133 CAGTAGGTACAGCTAGTCCGTC 59.387 54.545 0.00 0.00 0.00 4.79
1006 1031 7.929159 ACATTTTGTTCATTTGGGTTTGATTC 58.071 30.769 0.00 0.00 0.00 2.52
1211 1237 9.627123 CCTACTTTCCTCCACATTTTATCAATA 57.373 33.333 0.00 0.00 0.00 1.90
1361 1388 6.797707 TGGTCCCTCCGATTACTATTACTAT 58.202 40.000 0.00 0.00 39.52 2.12
1362 1389 6.044754 TCTGGTCCCTCCGATTACTATTACTA 59.955 42.308 0.00 0.00 39.52 1.82
1363 1390 5.070823 TGGTCCCTCCGATTACTATTACT 57.929 43.478 0.00 0.00 39.52 2.24
1364 1391 5.075493 TCTGGTCCCTCCGATTACTATTAC 58.925 45.833 0.00 0.00 39.52 1.89
1365 1392 5.329191 TCTGGTCCCTCCGATTACTATTA 57.671 43.478 0.00 0.00 39.52 0.98
1366 1393 4.194678 TCTGGTCCCTCCGATTACTATT 57.805 45.455 0.00 0.00 39.52 1.73
1434 1461 5.465935 GTCCTTTCCGCTCTAATCAGATAG 58.534 45.833 0.00 0.00 0.00 2.08
1543 1570 5.865085 TCCTTCGTGGAATAAGATATTGGG 58.135 41.667 0.00 0.00 42.94 4.12
1652 1682 9.588096 AAGTAAACTCTTCCATTGAAGGTTTAT 57.412 29.630 22.01 13.04 46.61 1.40
1653 1683 8.990163 AAGTAAACTCTTCCATTGAAGGTTTA 57.010 30.769 18.72 18.72 46.61 2.01
2008 2049 7.445402 TCACTTTCCTTTCAGGTTAAGAAGATG 59.555 37.037 11.75 3.67 36.53 2.90
2009 2050 7.518188 TCACTTTCCTTTCAGGTTAAGAAGAT 58.482 34.615 11.75 0.00 36.53 2.40
2010 2051 6.895782 TCACTTTCCTTTCAGGTTAAGAAGA 58.104 36.000 11.75 7.92 36.53 2.87
2011 2052 7.568199 TTCACTTTCCTTTCAGGTTAAGAAG 57.432 36.000 11.75 0.00 36.53 2.85
2012 2053 7.777910 TGATTCACTTTCCTTTCAGGTTAAGAA 59.222 33.333 11.75 0.00 36.53 2.52
2013 2054 7.287061 TGATTCACTTTCCTTTCAGGTTAAGA 58.713 34.615 11.75 0.00 36.53 2.10
2014 2055 7.510549 TGATTCACTTTCCTTTCAGGTTAAG 57.489 36.000 6.12 6.12 36.53 1.85
2015 2056 7.889873 TTGATTCACTTTCCTTTCAGGTTAA 57.110 32.000 0.00 0.00 36.53 2.01
2016 2057 9.581289 TTATTGATTCACTTTCCTTTCAGGTTA 57.419 29.630 0.00 0.00 36.53 2.85
2017 2058 6.983906 ATTGATTCACTTTCCTTTCAGGTT 57.016 33.333 0.00 0.00 36.53 3.50
2018 2059 8.526147 CATTATTGATTCACTTTCCTTTCAGGT 58.474 33.333 0.00 0.00 36.53 4.00
2019 2060 8.526147 ACATTATTGATTCACTTTCCTTTCAGG 58.474 33.333 0.00 0.00 36.46 3.86
2022 2063 9.490663 CGTACATTATTGATTCACTTTCCTTTC 57.509 33.333 0.00 0.00 0.00 2.62
2023 2064 8.458843 CCGTACATTATTGATTCACTTTCCTTT 58.541 33.333 0.00 0.00 0.00 3.11
2024 2065 7.415206 GCCGTACATTATTGATTCACTTTCCTT 60.415 37.037 0.00 0.00 0.00 3.36
2025 2066 6.038271 GCCGTACATTATTGATTCACTTTCCT 59.962 38.462 0.00 0.00 0.00 3.36
2026 2067 6.038271 AGCCGTACATTATTGATTCACTTTCC 59.962 38.462 0.00 0.00 0.00 3.13
2027 2068 7.016361 AGCCGTACATTATTGATTCACTTTC 57.984 36.000 0.00 0.00 0.00 2.62
2028 2069 7.254795 GCTAGCCGTACATTATTGATTCACTTT 60.255 37.037 2.29 0.00 0.00 2.66
2029 2070 6.202954 GCTAGCCGTACATTATTGATTCACTT 59.797 38.462 2.29 0.00 0.00 3.16
2030 2071 5.696724 GCTAGCCGTACATTATTGATTCACT 59.303 40.000 2.29 0.00 0.00 3.41
2031 2072 5.465390 TGCTAGCCGTACATTATTGATTCAC 59.535 40.000 13.29 0.00 0.00 3.18
2032 2073 5.606505 TGCTAGCCGTACATTATTGATTCA 58.393 37.500 13.29 0.00 0.00 2.57
2033 2074 6.368791 TCATGCTAGCCGTACATTATTGATTC 59.631 38.462 13.29 0.00 0.00 2.52
2034 2075 6.147821 GTCATGCTAGCCGTACATTATTGATT 59.852 38.462 13.29 0.00 0.00 2.57
2035 2076 5.639506 GTCATGCTAGCCGTACATTATTGAT 59.360 40.000 13.29 0.00 0.00 2.57
2036 2077 4.988540 GTCATGCTAGCCGTACATTATTGA 59.011 41.667 13.29 0.00 0.00 2.57
2037 2078 4.143326 CGTCATGCTAGCCGTACATTATTG 60.143 45.833 13.29 0.00 0.00 1.90
2038 2079 3.987868 CGTCATGCTAGCCGTACATTATT 59.012 43.478 13.29 0.00 0.00 1.40
2039 2080 3.005472 ACGTCATGCTAGCCGTACATTAT 59.995 43.478 13.29 0.00 0.00 1.28
2040 2081 2.359848 ACGTCATGCTAGCCGTACATTA 59.640 45.455 13.29 0.00 0.00 1.90
2041 2082 1.136305 ACGTCATGCTAGCCGTACATT 59.864 47.619 13.29 0.00 0.00 2.71
2042 2083 0.744874 ACGTCATGCTAGCCGTACAT 59.255 50.000 13.29 0.00 0.00 2.29
2043 2084 1.381522 TACGTCATGCTAGCCGTACA 58.618 50.000 16.66 2.17 34.95 2.90
2044 2085 2.701073 ATACGTCATGCTAGCCGTAC 57.299 50.000 21.05 11.78 38.45 3.67
2045 2086 3.720949 AAATACGTCATGCTAGCCGTA 57.279 42.857 20.94 20.94 39.74 4.02
2046 2087 2.596904 AAATACGTCATGCTAGCCGT 57.403 45.000 18.42 18.42 37.33 5.68
2047 2088 4.506654 AGTTTAAATACGTCATGCTAGCCG 59.493 41.667 13.29 10.94 0.00 5.52
2048 2089 5.986004 AGTTTAAATACGTCATGCTAGCC 57.014 39.130 13.29 0.00 0.00 3.93
2049 2090 6.772078 ACAAGTTTAAATACGTCATGCTAGC 58.228 36.000 8.10 8.10 0.00 3.42
2050 2091 7.399523 GGACAAGTTTAAATACGTCATGCTAG 58.600 38.462 0.00 0.00 0.00 3.42
2051 2092 6.035220 CGGACAAGTTTAAATACGTCATGCTA 59.965 38.462 0.00 0.00 0.00 3.49
2052 2093 5.163893 CGGACAAGTTTAAATACGTCATGCT 60.164 40.000 0.00 0.00 0.00 3.79
2053 2094 5.019498 CGGACAAGTTTAAATACGTCATGC 58.981 41.667 0.00 0.00 0.00 4.06
2054 2095 6.090358 AGTCGGACAAGTTTAAATACGTCATG 59.910 38.462 11.27 0.00 0.00 3.07
2055 2096 6.090358 CAGTCGGACAAGTTTAAATACGTCAT 59.910 38.462 11.27 0.00 0.00 3.06
2056 2097 5.403166 CAGTCGGACAAGTTTAAATACGTCA 59.597 40.000 11.27 0.00 0.00 4.35
2057 2098 5.667156 GCAGTCGGACAAGTTTAAATACGTC 60.667 44.000 11.27 0.00 0.00 4.34
2058 2099 4.151157 GCAGTCGGACAAGTTTAAATACGT 59.849 41.667 11.27 0.00 0.00 3.57
2059 2100 4.150980 TGCAGTCGGACAAGTTTAAATACG 59.849 41.667 11.27 0.00 0.00 3.06
2060 2101 5.600908 TGCAGTCGGACAAGTTTAAATAC 57.399 39.130 11.27 0.00 0.00 1.89
2061 2102 5.703592 ACATGCAGTCGGACAAGTTTAAATA 59.296 36.000 11.27 0.00 0.00 1.40
2062 2103 4.518970 ACATGCAGTCGGACAAGTTTAAAT 59.481 37.500 11.27 0.00 0.00 1.40
2063 2104 3.880490 ACATGCAGTCGGACAAGTTTAAA 59.120 39.130 11.27 0.00 0.00 1.52
2064 2105 3.472652 ACATGCAGTCGGACAAGTTTAA 58.527 40.909 11.27 0.00 0.00 1.52
2065 2106 3.120321 ACATGCAGTCGGACAAGTTTA 57.880 42.857 11.27 0.00 0.00 2.01
2066 2107 1.967319 ACATGCAGTCGGACAAGTTT 58.033 45.000 11.27 0.00 0.00 2.66
2067 2108 1.873591 GAACATGCAGTCGGACAAGTT 59.126 47.619 11.27 7.08 31.00 2.66
2068 2109 1.070758 AGAACATGCAGTCGGACAAGT 59.929 47.619 11.27 0.00 0.00 3.16
2069 2110 1.728971 GAGAACATGCAGTCGGACAAG 59.271 52.381 11.27 3.61 0.00 3.16
2070 2111 1.344438 AGAGAACATGCAGTCGGACAA 59.656 47.619 11.27 0.00 0.00 3.18
2071 2112 0.969149 AGAGAACATGCAGTCGGACA 59.031 50.000 11.27 0.00 0.00 4.02
2072 2113 1.634702 GAGAGAACATGCAGTCGGAC 58.365 55.000 0.00 0.00 0.00 4.79
2073 2114 0.532573 GGAGAGAACATGCAGTCGGA 59.467 55.000 0.00 0.00 0.00 4.55
2074 2115 0.460987 GGGAGAGAACATGCAGTCGG 60.461 60.000 0.00 0.00 0.00 4.79
2075 2116 0.247460 TGGGAGAGAACATGCAGTCG 59.753 55.000 0.00 0.00 0.00 4.18
2076 2117 2.479566 TTGGGAGAGAACATGCAGTC 57.520 50.000 0.00 0.00 0.00 3.51
2077 2118 3.087031 CAATTGGGAGAGAACATGCAGT 58.913 45.455 0.00 0.00 0.00 4.40
2078 2119 3.349927 TCAATTGGGAGAGAACATGCAG 58.650 45.455 5.42 0.00 0.00 4.41
2079 2120 3.438216 TCAATTGGGAGAGAACATGCA 57.562 42.857 5.42 0.00 0.00 3.96
2080 2121 4.276926 GGTATCAATTGGGAGAGAACATGC 59.723 45.833 5.42 0.00 0.00 4.06
2081 2122 4.823989 GGGTATCAATTGGGAGAGAACATG 59.176 45.833 5.42 0.00 0.00 3.21
2082 2123 4.478317 TGGGTATCAATTGGGAGAGAACAT 59.522 41.667 5.42 0.00 0.00 2.71
2083 2124 3.849574 TGGGTATCAATTGGGAGAGAACA 59.150 43.478 5.42 0.00 0.00 3.18
2084 2125 4.503714 TGGGTATCAATTGGGAGAGAAC 57.496 45.455 5.42 0.00 0.00 3.01
2085 2126 5.732331 ATTGGGTATCAATTGGGAGAGAA 57.268 39.130 5.42 0.00 43.04 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.