Multiple sequence alignment - TraesCS5D01G220500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G220500 chr5D 100.000 2114 0 0 1 2114 329132295 329130182 0.000000e+00 3904
1 TraesCS5D01G220500 chr5D 97.275 1321 28 3 103 1422 6208303 6206990 0.000000e+00 2233
2 TraesCS5D01G220500 chr5D 96.715 487 12 4 1466 1950 503309940 503310424 0.000000e+00 808
3 TraesCS5D01G220500 chr5D 96.881 481 12 3 1466 1944 503332556 503333035 0.000000e+00 802
4 TraesCS5D01G220500 chr5D 96.304 487 14 4 1466 1950 6256836 6256352 0.000000e+00 797
5 TraesCS5D01G220500 chr5D 95.161 186 7 2 1931 2114 542325147 542325332 2.050000e-75 292
6 TraesCS5D01G220500 chrUn 97.546 1426 24 3 1 1422 317473774 317472356 0.000000e+00 2429
7 TraesCS5D01G220500 chrUn 96.849 1333 36 3 96 1422 404957738 404959070 0.000000e+00 2224
8 TraesCS5D01G220500 chrUn 96.920 487 11 4 1466 1950 385511313 385510829 0.000000e+00 813
9 TraesCS5D01G220500 chrUn 96.480 483 14 3 1466 1946 261571465 261570984 0.000000e+00 795
10 TraesCS5D01G220500 chr1D 97.413 1430 22 5 1 1422 394178325 394179747 0.000000e+00 2422
11 TraesCS5D01G220500 chr1D 97.331 1424 28 3 1 1422 254489117 254490532 0.000000e+00 2410
12 TraesCS5D01G220500 chr1D 96.099 487 14 5 1466 1950 254453068 254453551 0.000000e+00 789
13 TraesCS5D01G220500 chr1D 97.727 176 3 1 1940 2114 387070585 387070760 3.410000e-78 302
14 TraesCS5D01G220500 chr6D 97.331 1424 25 4 1 1422 431399446 431400858 0.000000e+00 2407
15 TraesCS5D01G220500 chr6D 98.817 169 2 0 1946 2114 22584532 22584364 3.410000e-78 302
16 TraesCS5D01G220500 chr3B 96.629 1424 45 3 1 1422 201505988 201507410 0.000000e+00 2361
17 TraesCS5D01G220500 chr2D 96.716 1431 21 4 1 1422 628285093 628286506 0.000000e+00 2359
18 TraesCS5D01G220500 chr2D 96.205 1423 44 6 1 1422 334225336 334226749 0.000000e+00 2320
19 TraesCS5D01G220500 chr2D 99.401 167 1 0 1946 2112 572127643 572127809 9.480000e-79 303
20 TraesCS5D01G220500 chr2D 96.667 180 4 2 1936 2114 628454493 628454315 4.410000e-77 298
21 TraesCS5D01G220500 chr2D 97.175 177 4 1 1939 2114 642157663 642157839 4.410000e-77 298
22 TraesCS5D01G220500 chr2D 95.699 186 5 3 1930 2114 451597991 451598174 1.590000e-76 296
23 TraesCS5D01G220500 chr3D 95.667 1431 34 7 1 1422 21896977 21898388 0.000000e+00 2274
24 TraesCS5D01G220500 chr3D 97.740 177 3 1 1938 2114 586228969 586228794 9.480000e-79 303
25 TraesCS5D01G220500 chr1A 96.894 483 12 3 1466 1946 554478507 554478988 0.000000e+00 806
26 TraesCS5D01G220500 chr6B 96.687 483 13 3 1466 1946 18742017 18741536 0.000000e+00 800
27 TraesCS5D01G220500 chr4D 96.273 483 15 3 1466 1946 19886489 19886970 0.000000e+00 789
28 TraesCS5D01G220500 chr4D 97.207 179 5 0 1936 2114 464930640 464930462 9.480000e-79 303
29 TraesCS5D01G220500 chr7B 96.825 189 3 2 667 853 8175135 8175322 1.570000e-81 313
30 TraesCS5D01G220500 chr1B 97.403 77 2 0 1 77 347444472 347444396 4.730000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G220500 chr5D 329130182 329132295 2113 True 3904 3904 100.000 1 2114 1 chr5D.!!$R3 2113
1 TraesCS5D01G220500 chr5D 6206990 6208303 1313 True 2233 2233 97.275 103 1422 1 chr5D.!!$R1 1319
2 TraesCS5D01G220500 chrUn 317472356 317473774 1418 True 2429 2429 97.546 1 1422 1 chrUn.!!$R2 1421
3 TraesCS5D01G220500 chrUn 404957738 404959070 1332 False 2224 2224 96.849 96 1422 1 chrUn.!!$F1 1326
4 TraesCS5D01G220500 chr1D 394178325 394179747 1422 False 2422 2422 97.413 1 1422 1 chr1D.!!$F4 1421
5 TraesCS5D01G220500 chr1D 254489117 254490532 1415 False 2410 2410 97.331 1 1422 1 chr1D.!!$F2 1421
6 TraesCS5D01G220500 chr6D 431399446 431400858 1412 False 2407 2407 97.331 1 1422 1 chr6D.!!$F1 1421
7 TraesCS5D01G220500 chr3B 201505988 201507410 1422 False 2361 2361 96.629 1 1422 1 chr3B.!!$F1 1421
8 TraesCS5D01G220500 chr2D 628285093 628286506 1413 False 2359 2359 96.716 1 1422 1 chr2D.!!$F4 1421
9 TraesCS5D01G220500 chr2D 334225336 334226749 1413 False 2320 2320 96.205 1 1422 1 chr2D.!!$F1 1421
10 TraesCS5D01G220500 chr3D 21896977 21898388 1411 False 2274 2274 95.667 1 1422 1 chr3D.!!$F1 1421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 4.636648 TGCGTGGTTCCGAAACATAATTAT 59.363 37.5 1.33 0.0 37.1 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1836 0.036306 ATCTTCGGAAACCCGCACTT 59.964 50.0 0.0 0.0 46.35 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.636648 TGCGTGGTTCCGAAACATAATTAT 59.363 37.500 1.33 0.00 37.10 1.28
70 71 5.124138 TGCGTGGTTCCGAAACATAATTATT 59.876 36.000 1.33 0.00 37.10 1.40
71 72 6.031471 GCGTGGTTCCGAAACATAATTATTT 58.969 36.000 1.33 0.00 37.10 1.40
72 73 6.528774 GCGTGGTTCCGAAACATAATTATTTT 59.471 34.615 1.33 0.97 37.10 1.82
73 74 7.062488 GCGTGGTTCCGAAACATAATTATTTTT 59.938 33.333 8.91 8.91 37.10 1.94
420 429 6.818644 CGAGATGAAATAGGGAAAGACAGAAA 59.181 38.462 0.00 0.00 0.00 2.52
527 541 8.470657 AAAGTAAATTCAAGGAAGAGCTTTCT 57.529 30.769 0.00 0.00 0.00 2.52
588 607 9.401058 CTTTTGTTCTCCTCTTATTCCATATGT 57.599 33.333 1.24 0.00 0.00 2.29
879 903 9.498176 CATGTATCATCTGATGAATCCACTTTA 57.502 33.333 22.91 6.81 43.50 1.85
1075 1107 4.263994 TGGCTGCTTTAACTATAACCCCAA 60.264 41.667 0.00 0.00 0.00 4.12
1441 1473 7.739498 TTTTTGGTACCATAACTCTCTTGTC 57.261 36.000 17.17 0.00 0.00 3.18
1442 1474 6.428083 TTTGGTACCATAACTCTCTTGTCA 57.572 37.500 17.17 0.00 0.00 3.58
1443 1475 5.401531 TGGTACCATAACTCTCTTGTCAC 57.598 43.478 11.60 0.00 0.00 3.67
1444 1476 4.222145 TGGTACCATAACTCTCTTGTCACC 59.778 45.833 11.60 0.00 0.00 4.02
1445 1477 4.466726 GGTACCATAACTCTCTTGTCACCT 59.533 45.833 7.15 0.00 0.00 4.00
1446 1478 5.655532 GGTACCATAACTCTCTTGTCACCTA 59.344 44.000 7.15 0.00 0.00 3.08
1447 1479 5.662674 ACCATAACTCTCTTGTCACCTAC 57.337 43.478 0.00 0.00 0.00 3.18
1448 1480 5.334421 ACCATAACTCTCTTGTCACCTACT 58.666 41.667 0.00 0.00 0.00 2.57
1449 1481 6.491383 ACCATAACTCTCTTGTCACCTACTA 58.509 40.000 0.00 0.00 0.00 1.82
1450 1482 6.603997 ACCATAACTCTCTTGTCACCTACTAG 59.396 42.308 0.00 0.00 32.84 2.57
1451 1483 6.460399 CCATAACTCTCTTGTCACCTACTAGC 60.460 46.154 0.00 0.00 31.78 3.42
1452 1484 3.358118 ACTCTCTTGTCACCTACTAGCC 58.642 50.000 0.00 0.00 31.78 3.93
1453 1485 2.691011 CTCTCTTGTCACCTACTAGCCC 59.309 54.545 0.00 0.00 31.78 5.19
1454 1486 1.405821 CTCTTGTCACCTACTAGCCCG 59.594 57.143 0.00 0.00 31.78 6.13
1455 1487 1.183549 CTTGTCACCTACTAGCCCGT 58.816 55.000 0.00 0.00 0.00 5.28
1456 1488 1.134560 CTTGTCACCTACTAGCCCGTC 59.865 57.143 0.00 0.00 0.00 4.79
1457 1489 1.028330 TGTCACCTACTAGCCCGTCG 61.028 60.000 0.00 0.00 0.00 5.12
1458 1490 0.745845 GTCACCTACTAGCCCGTCGA 60.746 60.000 0.00 0.00 0.00 4.20
1459 1491 0.182061 TCACCTACTAGCCCGTCGAT 59.818 55.000 0.00 0.00 0.00 3.59
1460 1492 1.417517 TCACCTACTAGCCCGTCGATA 59.582 52.381 0.00 0.00 0.00 2.92
1461 1493 2.039480 TCACCTACTAGCCCGTCGATAT 59.961 50.000 0.00 0.00 0.00 1.63
1462 1494 2.818432 CACCTACTAGCCCGTCGATATT 59.182 50.000 0.00 0.00 0.00 1.28
1463 1495 2.818432 ACCTACTAGCCCGTCGATATTG 59.182 50.000 0.00 0.00 0.00 1.90
1464 1496 3.079578 CCTACTAGCCCGTCGATATTGA 58.920 50.000 0.00 0.00 0.00 2.57
1465 1497 3.504906 CCTACTAGCCCGTCGATATTGAA 59.495 47.826 0.00 0.00 0.00 2.69
1466 1498 4.158025 CCTACTAGCCCGTCGATATTGAAT 59.842 45.833 0.00 0.00 0.00 2.57
1467 1499 4.602340 ACTAGCCCGTCGATATTGAATT 57.398 40.909 0.00 0.00 0.00 2.17
1468 1500 5.717078 ACTAGCCCGTCGATATTGAATTA 57.283 39.130 0.00 0.00 0.00 1.40
1469 1501 6.092955 ACTAGCCCGTCGATATTGAATTAA 57.907 37.500 0.00 0.00 0.00 1.40
1470 1502 6.698380 ACTAGCCCGTCGATATTGAATTAAT 58.302 36.000 0.00 0.00 0.00 1.40
1471 1503 7.833786 ACTAGCCCGTCGATATTGAATTAATA 58.166 34.615 0.00 0.00 35.79 0.98
1472 1504 7.974501 ACTAGCCCGTCGATATTGAATTAATAG 59.025 37.037 0.00 0.00 34.86 1.73
1473 1505 6.931838 AGCCCGTCGATATTGAATTAATAGA 58.068 36.000 0.00 0.00 34.86 1.98
1474 1506 7.036220 AGCCCGTCGATATTGAATTAATAGAG 58.964 38.462 0.00 0.00 34.86 2.43
1475 1507 7.033791 GCCCGTCGATATTGAATTAATAGAGA 58.966 38.462 0.00 0.00 34.86 3.10
1476 1508 7.544566 GCCCGTCGATATTGAATTAATAGAGAA 59.455 37.037 0.00 0.00 34.86 2.87
1477 1509 9.419297 CCCGTCGATATTGAATTAATAGAGAAA 57.581 33.333 0.00 0.00 34.86 2.52
1497 1529 8.435982 AGAGAAATCATTTACAAGGGAGATAGG 58.564 37.037 0.00 0.00 0.00 2.57
1498 1530 8.107196 AGAAATCATTTACAAGGGAGATAGGT 57.893 34.615 0.00 0.00 0.00 3.08
1499 1531 8.560903 AGAAATCATTTACAAGGGAGATAGGTT 58.439 33.333 0.00 0.00 0.00 3.50
1500 1532 9.847224 GAAATCATTTACAAGGGAGATAGGTTA 57.153 33.333 0.00 0.00 0.00 2.85
1501 1533 9.853177 AAATCATTTACAAGGGAGATAGGTTAG 57.147 33.333 0.00 0.00 0.00 2.34
1502 1534 7.989947 TCATTTACAAGGGAGATAGGTTAGT 57.010 36.000 0.00 0.00 0.00 2.24
1503 1535 8.388656 TCATTTACAAGGGAGATAGGTTAGTT 57.611 34.615 0.00 0.00 0.00 2.24
1504 1536 9.496710 TCATTTACAAGGGAGATAGGTTAGTTA 57.503 33.333 0.00 0.00 0.00 2.24
1505 1537 9.543783 CATTTACAAGGGAGATAGGTTAGTTAC 57.456 37.037 0.00 0.00 0.00 2.50
1506 1538 5.848833 ACAAGGGAGATAGGTTAGTTACG 57.151 43.478 0.00 0.00 0.00 3.18
1507 1539 5.267587 ACAAGGGAGATAGGTTAGTTACGT 58.732 41.667 0.00 0.00 0.00 3.57
1508 1540 5.718607 ACAAGGGAGATAGGTTAGTTACGTT 59.281 40.000 0.00 0.00 0.00 3.99
1509 1541 6.212187 ACAAGGGAGATAGGTTAGTTACGTTT 59.788 38.462 0.00 0.00 0.00 3.60
1510 1542 7.397192 ACAAGGGAGATAGGTTAGTTACGTTTA 59.603 37.037 0.00 0.00 0.00 2.01
1511 1543 8.419442 CAAGGGAGATAGGTTAGTTACGTTTAT 58.581 37.037 0.00 0.00 0.00 1.40
1512 1544 9.646522 AAGGGAGATAGGTTAGTTACGTTTATA 57.353 33.333 0.00 0.00 0.00 0.98
1513 1545 9.819754 AGGGAGATAGGTTAGTTACGTTTATAT 57.180 33.333 0.00 0.00 0.00 0.86
1541 1573 9.302345 TGAAAAATCGAGATCTAGTGACATAAC 57.698 33.333 0.00 0.00 0.00 1.89
1542 1574 7.916128 AAAATCGAGATCTAGTGACATAACG 57.084 36.000 0.00 0.00 0.00 3.18
1543 1575 4.469625 TCGAGATCTAGTGACATAACGC 57.530 45.455 0.00 0.00 0.00 4.84
1544 1576 3.875134 TCGAGATCTAGTGACATAACGCA 59.125 43.478 0.00 0.00 0.00 5.24
1545 1577 4.334481 TCGAGATCTAGTGACATAACGCAA 59.666 41.667 0.00 0.00 0.00 4.85
1547 1579 4.938080 AGATCTAGTGACATAACGCAAGG 58.062 43.478 0.00 0.00 46.39 3.61
1548 1580 4.402793 AGATCTAGTGACATAACGCAAGGT 59.597 41.667 0.00 0.00 46.39 3.50
1549 1581 4.106029 TCTAGTGACATAACGCAAGGTC 57.894 45.455 0.00 0.00 46.39 3.85
1550 1582 3.762288 TCTAGTGACATAACGCAAGGTCT 59.238 43.478 4.38 0.00 46.39 3.85
1551 1583 3.402628 AGTGACATAACGCAAGGTCTT 57.597 42.857 4.38 0.00 46.39 3.01
1552 1584 3.326747 AGTGACATAACGCAAGGTCTTC 58.673 45.455 4.38 0.00 46.39 2.87
1553 1585 2.415512 GTGACATAACGCAAGGTCTTCC 59.584 50.000 4.38 0.00 46.39 3.46
1554 1586 2.037902 TGACATAACGCAAGGTCTTCCA 59.962 45.455 4.38 0.00 46.39 3.53
1555 1587 3.071479 GACATAACGCAAGGTCTTCCAA 58.929 45.455 0.00 0.00 46.39 3.53
1556 1588 3.482436 ACATAACGCAAGGTCTTCCAAA 58.518 40.909 0.00 0.00 46.39 3.28
1557 1589 3.886505 ACATAACGCAAGGTCTTCCAAAA 59.113 39.130 0.00 0.00 46.39 2.44
1558 1590 4.023193 ACATAACGCAAGGTCTTCCAAAAG 60.023 41.667 0.00 0.00 46.39 2.27
1559 1591 2.052782 ACGCAAGGTCTTCCAAAAGT 57.947 45.000 0.00 0.00 46.39 2.66
1560 1592 1.676006 ACGCAAGGTCTTCCAAAAGTG 59.324 47.619 0.00 0.00 46.39 3.16
1561 1593 3.586293 ACGCAAGGTCTTCCAAAAGTGG 61.586 50.000 0.00 0.00 45.18 4.00
1577 1609 6.708676 CAAAAGTGGAACAAATCTTTGAAGC 58.291 36.000 9.53 0.00 44.16 3.86
1578 1610 4.228912 AGTGGAACAAATCTTTGAAGCG 57.771 40.909 9.53 0.00 44.16 4.68
1579 1611 2.726241 GTGGAACAAATCTTTGAAGCGC 59.274 45.455 9.53 0.00 44.16 5.92
1580 1612 1.978782 GGAACAAATCTTTGAAGCGCG 59.021 47.619 0.00 0.00 40.55 6.86
1581 1613 2.604614 GGAACAAATCTTTGAAGCGCGT 60.605 45.455 8.43 0.00 40.55 6.01
1582 1614 2.774439 ACAAATCTTTGAAGCGCGTT 57.226 40.000 8.43 0.00 40.55 4.84
1583 1615 2.650608 ACAAATCTTTGAAGCGCGTTC 58.349 42.857 8.43 11.05 40.55 3.95
1584 1616 2.032799 ACAAATCTTTGAAGCGCGTTCA 59.967 40.909 16.54 16.54 43.82 3.18
1591 1623 2.987413 TGAAGCGCGTTCAATTGATT 57.013 40.000 17.67 0.00 42.49 2.57
1592 1624 2.850321 TGAAGCGCGTTCAATTGATTC 58.150 42.857 17.67 9.36 42.49 2.52
1593 1625 2.225255 TGAAGCGCGTTCAATTGATTCA 59.775 40.909 17.67 11.84 42.49 2.57
1594 1626 3.119884 TGAAGCGCGTTCAATTGATTCAT 60.120 39.130 17.67 0.00 42.49 2.57
1595 1627 3.492421 AGCGCGTTCAATTGATTCATT 57.508 38.095 9.40 0.00 0.00 2.57
1596 1628 4.614555 AGCGCGTTCAATTGATTCATTA 57.385 36.364 9.40 0.00 0.00 1.90
1597 1629 5.173774 AGCGCGTTCAATTGATTCATTAT 57.826 34.783 9.40 0.00 0.00 1.28
1598 1630 5.207768 AGCGCGTTCAATTGATTCATTATC 58.792 37.500 9.40 0.00 0.00 1.75
1599 1631 4.379793 GCGCGTTCAATTGATTCATTATCC 59.620 41.667 9.40 0.00 31.87 2.59
1600 1632 4.911610 CGCGTTCAATTGATTCATTATCCC 59.088 41.667 9.40 0.00 31.87 3.85
1601 1633 5.222631 GCGTTCAATTGATTCATTATCCCC 58.777 41.667 9.40 0.00 31.87 4.81
1602 1634 5.451908 CGTTCAATTGATTCATTATCCCCG 58.548 41.667 9.40 0.00 31.87 5.73
1603 1635 5.238432 CGTTCAATTGATTCATTATCCCCGA 59.762 40.000 9.40 0.00 31.87 5.14
1604 1636 6.238621 CGTTCAATTGATTCATTATCCCCGAA 60.239 38.462 9.40 0.00 31.87 4.30
1605 1637 7.522073 CGTTCAATTGATTCATTATCCCCGAAT 60.522 37.037 9.40 0.00 31.87 3.34
1606 1638 7.452880 TCAATTGATTCATTATCCCCGAATC 57.547 36.000 3.38 0.00 43.42 2.52
1607 1639 7.233632 TCAATTGATTCATTATCCCCGAATCT 58.766 34.615 3.38 0.00 43.48 2.40
1608 1640 7.391554 TCAATTGATTCATTATCCCCGAATCTC 59.608 37.037 3.38 0.00 43.48 2.75
1609 1641 4.820897 TGATTCATTATCCCCGAATCTCG 58.179 43.478 11.41 0.00 43.48 4.04
1610 1642 4.526650 TGATTCATTATCCCCGAATCTCGA 59.473 41.667 11.41 0.00 43.48 4.04
1611 1643 4.948341 TTCATTATCCCCGAATCTCGAA 57.052 40.909 0.00 0.00 43.74 3.71
1612 1644 4.948341 TCATTATCCCCGAATCTCGAAA 57.052 40.909 0.00 0.00 43.74 3.46
1613 1645 4.883083 TCATTATCCCCGAATCTCGAAAG 58.117 43.478 0.00 0.00 43.74 2.62
1614 1646 3.746045 TTATCCCCGAATCTCGAAAGG 57.254 47.619 0.00 0.00 43.74 3.11
1615 1647 1.789523 ATCCCCGAATCTCGAAAGGA 58.210 50.000 0.00 1.77 43.74 3.36
1616 1648 1.112113 TCCCCGAATCTCGAAAGGAG 58.888 55.000 0.00 0.00 43.74 3.69
1628 1660 5.731599 CTCGAAAGGAGAATTGAGGATTG 57.268 43.478 0.00 0.00 46.23 2.67
1629 1661 4.517285 TCGAAAGGAGAATTGAGGATTGG 58.483 43.478 0.00 0.00 0.00 3.16
1630 1662 4.225042 TCGAAAGGAGAATTGAGGATTGGA 59.775 41.667 0.00 0.00 0.00 3.53
1631 1663 4.943705 CGAAAGGAGAATTGAGGATTGGAA 59.056 41.667 0.00 0.00 0.00 3.53
1632 1664 5.591877 CGAAAGGAGAATTGAGGATTGGAAT 59.408 40.000 0.00 0.00 0.00 3.01
1633 1665 6.459298 CGAAAGGAGAATTGAGGATTGGAATG 60.459 42.308 0.00 0.00 0.00 2.67
1634 1666 5.722172 AGGAGAATTGAGGATTGGAATGA 57.278 39.130 0.00 0.00 0.00 2.57
1635 1667 5.692928 AGGAGAATTGAGGATTGGAATGAG 58.307 41.667 0.00 0.00 0.00 2.90
1636 1668 4.277921 GGAGAATTGAGGATTGGAATGAGC 59.722 45.833 0.00 0.00 0.00 4.26
1637 1669 3.881688 AGAATTGAGGATTGGAATGAGCG 59.118 43.478 0.00 0.00 0.00 5.03
1638 1670 2.787473 TTGAGGATTGGAATGAGCGT 57.213 45.000 0.00 0.00 0.00 5.07
1639 1671 3.904800 TTGAGGATTGGAATGAGCGTA 57.095 42.857 0.00 0.00 0.00 4.42
1640 1672 4.422073 TTGAGGATTGGAATGAGCGTAT 57.578 40.909 0.00 0.00 0.00 3.06
1641 1673 5.545063 TTGAGGATTGGAATGAGCGTATA 57.455 39.130 0.00 0.00 0.00 1.47
1642 1674 4.883083 TGAGGATTGGAATGAGCGTATAC 58.117 43.478 0.00 0.00 0.00 1.47
1643 1675 4.246458 GAGGATTGGAATGAGCGTATACC 58.754 47.826 0.00 0.00 0.00 2.73
1644 1676 3.646162 AGGATTGGAATGAGCGTATACCA 59.354 43.478 0.00 0.00 0.00 3.25
1645 1677 4.102524 AGGATTGGAATGAGCGTATACCAA 59.897 41.667 0.00 0.00 40.74 3.67
1646 1678 4.452455 GGATTGGAATGAGCGTATACCAAG 59.548 45.833 0.00 0.00 40.02 3.61
1647 1679 4.746535 TTGGAATGAGCGTATACCAAGA 57.253 40.909 0.00 0.00 34.15 3.02
1648 1680 4.746535 TGGAATGAGCGTATACCAAGAA 57.253 40.909 0.00 0.00 0.00 2.52
1649 1681 5.290493 TGGAATGAGCGTATACCAAGAAT 57.710 39.130 0.00 0.00 0.00 2.40
1650 1682 5.680619 TGGAATGAGCGTATACCAAGAATT 58.319 37.500 0.00 0.00 0.00 2.17
1651 1683 5.758296 TGGAATGAGCGTATACCAAGAATTC 59.242 40.000 0.00 0.00 0.00 2.17
1652 1684 5.992217 GGAATGAGCGTATACCAAGAATTCT 59.008 40.000 0.88 0.88 0.00 2.40
1653 1685 6.483640 GGAATGAGCGTATACCAAGAATTCTT 59.516 38.462 15.11 15.11 36.45 2.52
1664 1696 2.907458 AGAATTCTTGGGGTCCCTTG 57.093 50.000 8.15 0.00 36.94 3.61
1665 1697 1.359130 AGAATTCTTGGGGTCCCTTGG 59.641 52.381 8.15 0.00 36.94 3.61
1666 1698 0.413434 AATTCTTGGGGTCCCTTGGG 59.587 55.000 8.15 0.00 36.94 4.12
1667 1699 1.518431 ATTCTTGGGGTCCCTTGGGG 61.518 60.000 8.15 0.00 46.11 4.96
1676 1708 3.836945 TCCCTTGGGGACTCTTGAT 57.163 52.632 5.78 0.00 46.17 2.57
1677 1709 2.059756 TCCCTTGGGGACTCTTGATT 57.940 50.000 5.78 0.00 46.17 2.57
1678 1710 1.635487 TCCCTTGGGGACTCTTGATTG 59.365 52.381 5.78 0.00 46.17 2.67
1679 1711 2.134789 CCTTGGGGACTCTTGATTGG 57.865 55.000 0.00 0.00 33.58 3.16
1680 1712 1.635487 CCTTGGGGACTCTTGATTGGA 59.365 52.381 0.00 0.00 33.58 3.53
1681 1713 2.356535 CCTTGGGGACTCTTGATTGGAG 60.357 54.545 0.00 0.00 36.92 3.86
1682 1714 0.620556 TGGGGACTCTTGATTGGAGC 59.379 55.000 0.00 0.00 34.46 4.70
1683 1715 0.915364 GGGGACTCTTGATTGGAGCT 59.085 55.000 0.00 0.00 34.46 4.09
1684 1716 1.407989 GGGGACTCTTGATTGGAGCTG 60.408 57.143 0.00 0.00 34.46 4.24
1685 1717 1.556911 GGGACTCTTGATTGGAGCTGA 59.443 52.381 0.00 0.00 34.46 4.26
1686 1718 2.419851 GGGACTCTTGATTGGAGCTGAG 60.420 54.545 0.00 0.00 34.46 3.35
1687 1719 2.278854 GACTCTTGATTGGAGCTGAGC 58.721 52.381 0.00 0.00 34.46 4.26
1688 1720 1.907936 ACTCTTGATTGGAGCTGAGCT 59.092 47.619 6.69 6.69 43.88 4.09
1689 1721 3.102972 ACTCTTGATTGGAGCTGAGCTA 58.897 45.455 7.08 0.00 39.88 3.32
1690 1722 3.517100 ACTCTTGATTGGAGCTGAGCTAA 59.483 43.478 7.08 0.00 39.88 3.09
1691 1723 3.866651 TCTTGATTGGAGCTGAGCTAAC 58.133 45.455 7.08 4.04 39.88 2.34
1692 1724 2.698855 TGATTGGAGCTGAGCTAACC 57.301 50.000 7.08 6.02 39.88 2.85
1693 1725 1.908619 TGATTGGAGCTGAGCTAACCA 59.091 47.619 7.08 9.14 39.88 3.67
1694 1726 2.507058 TGATTGGAGCTGAGCTAACCAT 59.493 45.455 14.70 5.46 39.88 3.55
1695 1727 3.711190 TGATTGGAGCTGAGCTAACCATA 59.289 43.478 14.70 7.39 39.88 2.74
1696 1728 3.827008 TTGGAGCTGAGCTAACCATAG 57.173 47.619 14.70 0.00 39.88 2.23
1707 1739 3.261981 CTAACCATAGCCCAAAGTCGT 57.738 47.619 0.00 0.00 0.00 4.34
1708 1740 4.395959 CTAACCATAGCCCAAAGTCGTA 57.604 45.455 0.00 0.00 0.00 3.43
1709 1741 3.926058 AACCATAGCCCAAAGTCGTAT 57.074 42.857 0.00 0.00 0.00 3.06
1710 1742 3.470645 ACCATAGCCCAAAGTCGTATC 57.529 47.619 0.00 0.00 0.00 2.24
1711 1743 3.039011 ACCATAGCCCAAAGTCGTATCT 58.961 45.455 0.00 0.00 0.00 1.98
1712 1744 3.069729 ACCATAGCCCAAAGTCGTATCTC 59.930 47.826 0.00 0.00 0.00 2.75
1713 1745 3.322254 CCATAGCCCAAAGTCGTATCTCT 59.678 47.826 0.00 0.00 0.00 3.10
1714 1746 4.202264 CCATAGCCCAAAGTCGTATCTCTT 60.202 45.833 0.00 0.00 0.00 2.85
1715 1747 3.983044 AGCCCAAAGTCGTATCTCTTT 57.017 42.857 0.00 0.00 34.74 2.52
1716 1748 3.600388 AGCCCAAAGTCGTATCTCTTTG 58.400 45.455 9.70 9.70 45.53 2.77
1730 1762 9.893634 TCGTATCTCTTTGGTTAATAAAATCCA 57.106 29.630 0.00 0.00 0.00 3.41
1746 1778 6.465439 AAAATCCAAAGGTTTATCGATCCC 57.535 37.500 0.00 0.31 0.00 3.85
1747 1779 4.788925 ATCCAAAGGTTTATCGATCCCA 57.211 40.909 0.00 0.00 0.00 4.37
1748 1780 4.577988 TCCAAAGGTTTATCGATCCCAA 57.422 40.909 0.00 0.00 0.00 4.12
1749 1781 4.523083 TCCAAAGGTTTATCGATCCCAAG 58.477 43.478 0.00 0.00 0.00 3.61
1750 1782 3.632145 CCAAAGGTTTATCGATCCCAAGG 59.368 47.826 0.00 1.03 0.00 3.61
1751 1783 3.577805 AAGGTTTATCGATCCCAAGGG 57.422 47.619 0.00 0.00 0.00 3.95
1752 1784 1.774856 AGGTTTATCGATCCCAAGGGG 59.225 52.381 0.00 0.00 46.11 4.79
1753 1785 1.493446 GGTTTATCGATCCCAAGGGGT 59.507 52.381 0.00 0.00 44.74 4.95
1754 1786 2.707257 GGTTTATCGATCCCAAGGGGTA 59.293 50.000 0.00 0.00 44.74 3.69
1755 1787 3.495629 GGTTTATCGATCCCAAGGGGTAC 60.496 52.174 0.00 0.00 44.74 3.34
1756 1788 2.779429 TATCGATCCCAAGGGGTACA 57.221 50.000 0.00 0.00 44.74 2.90
1757 1789 1.424638 ATCGATCCCAAGGGGTACAG 58.575 55.000 5.08 0.00 44.74 2.74
1758 1790 0.337082 TCGATCCCAAGGGGTACAGA 59.663 55.000 5.08 0.00 44.74 3.41
1759 1791 1.062428 TCGATCCCAAGGGGTACAGAT 60.062 52.381 5.08 0.00 44.74 2.90
1760 1792 1.344763 CGATCCCAAGGGGTACAGATC 59.655 57.143 5.08 0.00 44.74 2.75
1761 1793 1.700186 GATCCCAAGGGGTACAGATCC 59.300 57.143 5.08 0.00 44.74 3.36
1762 1794 0.419865 TCCCAAGGGGTACAGATCCA 59.580 55.000 5.08 0.00 44.74 3.41
1763 1795 1.010793 TCCCAAGGGGTACAGATCCAT 59.989 52.381 5.08 0.00 44.74 3.41
1764 1796 2.251605 TCCCAAGGGGTACAGATCCATA 59.748 50.000 5.08 0.00 44.74 2.74
1765 1797 3.053077 CCCAAGGGGTACAGATCCATAA 58.947 50.000 0.00 0.00 38.25 1.90
1766 1798 3.657727 CCCAAGGGGTACAGATCCATAAT 59.342 47.826 0.00 0.00 38.25 1.28
1767 1799 4.849810 CCCAAGGGGTACAGATCCATAATA 59.150 45.833 0.00 0.00 38.25 0.98
1768 1800 5.045578 CCCAAGGGGTACAGATCCATAATAG 60.046 48.000 0.00 0.00 38.25 1.73
1769 1801 5.785423 CCAAGGGGTACAGATCCATAATAGA 59.215 44.000 0.00 0.00 0.00 1.98
1770 1802 6.295916 CCAAGGGGTACAGATCCATAATAGAC 60.296 46.154 0.00 0.00 0.00 2.59
1771 1803 5.977533 AGGGGTACAGATCCATAATAGACA 58.022 41.667 0.00 0.00 0.00 3.41
1772 1804 6.575411 AGGGGTACAGATCCATAATAGACAT 58.425 40.000 0.00 0.00 0.00 3.06
1773 1805 7.719424 AGGGGTACAGATCCATAATAGACATA 58.281 38.462 0.00 0.00 0.00 2.29
1774 1806 8.355256 AGGGGTACAGATCCATAATAGACATAT 58.645 37.037 0.00 0.00 0.00 1.78
1775 1807 8.424918 GGGGTACAGATCCATAATAGACATATG 58.575 40.741 0.00 0.00 0.00 1.78
1809 1841 4.932146 ACACCAAGTAACATCAAAAGTGC 58.068 39.130 0.00 0.00 0.00 4.40
1810 1842 3.974401 CACCAAGTAACATCAAAAGTGCG 59.026 43.478 0.00 0.00 0.00 5.34
1811 1843 3.004315 ACCAAGTAACATCAAAAGTGCGG 59.996 43.478 0.00 0.00 0.00 5.69
1812 1844 3.564511 CAAGTAACATCAAAAGTGCGGG 58.435 45.455 0.00 0.00 0.00 6.13
1813 1845 2.858745 AGTAACATCAAAAGTGCGGGT 58.141 42.857 0.00 0.00 0.00 5.28
1814 1846 3.219281 AGTAACATCAAAAGTGCGGGTT 58.781 40.909 0.00 0.00 0.00 4.11
1815 1847 3.634910 AGTAACATCAAAAGTGCGGGTTT 59.365 39.130 0.00 0.00 0.00 3.27
1816 1848 2.793278 ACATCAAAAGTGCGGGTTTC 57.207 45.000 0.00 0.00 0.00 2.78
1817 1849 1.339929 ACATCAAAAGTGCGGGTTTCC 59.660 47.619 0.00 0.00 0.00 3.13
1830 1862 2.723273 GGGTTTCCGAAGATGGAATGT 58.277 47.619 0.00 0.00 46.94 2.71
1831 1863 2.683362 GGGTTTCCGAAGATGGAATGTC 59.317 50.000 0.00 0.00 46.94 3.06
1832 1864 3.610911 GGTTTCCGAAGATGGAATGTCT 58.389 45.455 0.00 0.00 46.94 3.41
1833 1865 4.383770 GGGTTTCCGAAGATGGAATGTCTA 60.384 45.833 0.00 0.00 46.94 2.59
1834 1866 5.183228 GGTTTCCGAAGATGGAATGTCTAA 58.817 41.667 0.00 0.00 46.94 2.10
1835 1867 5.823045 GGTTTCCGAAGATGGAATGTCTAAT 59.177 40.000 0.00 0.00 46.94 1.73
1836 1868 6.238484 GGTTTCCGAAGATGGAATGTCTAATG 60.238 42.308 0.00 0.00 46.94 1.90
1837 1869 5.614324 TCCGAAGATGGAATGTCTAATGT 57.386 39.130 0.00 0.00 34.30 2.71
1838 1870 5.989477 TCCGAAGATGGAATGTCTAATGTT 58.011 37.500 0.00 0.00 34.30 2.71
1839 1871 6.414732 TCCGAAGATGGAATGTCTAATGTTT 58.585 36.000 0.00 0.00 34.30 2.83
1840 1872 6.884295 TCCGAAGATGGAATGTCTAATGTTTT 59.116 34.615 0.00 0.00 34.30 2.43
1841 1873 7.393234 TCCGAAGATGGAATGTCTAATGTTTTT 59.607 33.333 0.00 0.00 34.30 1.94
1860 1892 5.554822 TTTTTCGACTGGGAATTAATCGG 57.445 39.130 0.00 0.00 33.66 4.18
1861 1893 4.475051 TTTCGACTGGGAATTAATCGGA 57.525 40.909 0.00 0.00 33.66 4.55
1862 1894 3.447918 TCGACTGGGAATTAATCGGAC 57.552 47.619 0.00 0.00 33.66 4.79
1863 1895 3.028850 TCGACTGGGAATTAATCGGACT 58.971 45.455 0.00 0.00 33.66 3.85
1864 1896 4.209538 TCGACTGGGAATTAATCGGACTA 58.790 43.478 0.00 0.00 33.66 2.59
1865 1897 4.831155 TCGACTGGGAATTAATCGGACTAT 59.169 41.667 0.00 0.00 33.66 2.12
1866 1898 5.303589 TCGACTGGGAATTAATCGGACTATT 59.696 40.000 0.00 0.00 33.66 1.73
1867 1899 5.405571 CGACTGGGAATTAATCGGACTATTG 59.594 44.000 0.00 0.00 0.00 1.90
1868 1900 5.063880 ACTGGGAATTAATCGGACTATTGC 58.936 41.667 0.00 0.00 0.00 3.56
1869 1901 4.062293 TGGGAATTAATCGGACTATTGCG 58.938 43.478 0.00 0.00 38.05 4.85
1874 1906 2.411701 TCGGACTATTGCGAGCGG 59.588 61.111 0.00 0.00 41.16 5.52
1875 1907 2.116533 TCGGACTATTGCGAGCGGA 61.117 57.895 0.00 0.00 41.16 5.54
1876 1908 1.226859 CGGACTATTGCGAGCGGAA 60.227 57.895 0.00 0.00 39.29 4.30
1877 1909 0.804544 CGGACTATTGCGAGCGGAAA 60.805 55.000 0.12 0.00 39.29 3.13
1878 1910 0.931005 GGACTATTGCGAGCGGAAAG 59.069 55.000 0.12 3.43 0.00 2.62
1879 1911 1.470979 GGACTATTGCGAGCGGAAAGA 60.471 52.381 0.12 0.00 0.00 2.52
1880 1912 1.855360 GACTATTGCGAGCGGAAAGAG 59.145 52.381 0.12 4.66 0.00 2.85
1881 1913 0.579156 CTATTGCGAGCGGAAAGAGC 59.421 55.000 0.12 0.00 0.00 4.09
1882 1914 0.108377 TATTGCGAGCGGAAAGAGCA 60.108 50.000 0.12 0.00 37.01 4.26
1883 1915 1.364626 ATTGCGAGCGGAAAGAGCAG 61.365 55.000 0.12 0.00 39.11 4.24
1884 1916 3.191539 GCGAGCGGAAAGAGCAGG 61.192 66.667 0.00 0.00 37.01 4.85
1885 1917 2.573869 CGAGCGGAAAGAGCAGGA 59.426 61.111 0.00 0.00 37.01 3.86
1886 1918 1.807573 CGAGCGGAAAGAGCAGGAC 60.808 63.158 0.00 0.00 37.01 3.85
1887 1919 1.807573 GAGCGGAAAGAGCAGGACG 60.808 63.158 0.00 0.00 37.01 4.79
1888 1920 2.214181 GAGCGGAAAGAGCAGGACGA 62.214 60.000 0.00 0.00 37.01 4.20
1889 1921 1.807573 GCGGAAAGAGCAGGACGAG 60.808 63.158 0.00 0.00 34.19 4.18
1890 1922 1.807573 CGGAAAGAGCAGGACGAGC 60.808 63.158 0.00 0.00 0.00 5.03
1891 1923 1.594310 GGAAAGAGCAGGACGAGCT 59.406 57.895 0.00 0.00 46.82 4.09
1892 1924 0.036858 GGAAAGAGCAGGACGAGCTT 60.037 55.000 0.00 0.00 43.58 3.74
1893 1925 1.355005 GAAAGAGCAGGACGAGCTTC 58.645 55.000 0.00 0.00 43.58 3.86
1894 1926 0.389166 AAAGAGCAGGACGAGCTTCG 60.389 55.000 0.00 0.00 43.58 3.79
1895 1927 2.202676 GAGCAGGACGAGCTTCGG 60.203 66.667 9.75 0.00 45.59 4.30
1896 1928 2.676822 AGCAGGACGAGCTTCGGA 60.677 61.111 9.75 0.00 45.59 4.55
1897 1929 2.010582 GAGCAGGACGAGCTTCGGAT 62.011 60.000 9.75 0.00 45.59 4.18
1898 1930 1.880340 GCAGGACGAGCTTCGGATG 60.880 63.158 9.75 6.56 45.59 3.51
1899 1931 1.809869 CAGGACGAGCTTCGGATGA 59.190 57.895 9.75 0.00 45.59 2.92
1900 1932 0.173481 CAGGACGAGCTTCGGATGAA 59.827 55.000 9.75 0.00 45.59 2.57
1901 1933 1.115467 AGGACGAGCTTCGGATGAAT 58.885 50.000 9.75 0.00 45.59 2.57
1902 1934 1.067821 AGGACGAGCTTCGGATGAATC 59.932 52.381 9.75 0.00 45.59 2.52
1903 1935 1.124462 GACGAGCTTCGGATGAATCG 58.876 55.000 13.55 13.55 45.59 3.34
1904 1936 0.738975 ACGAGCTTCGGATGAATCGA 59.261 50.000 18.79 0.00 45.59 3.59
1905 1937 1.338337 ACGAGCTTCGGATGAATCGAT 59.662 47.619 18.79 0.00 45.59 3.59
1906 1938 1.982223 CGAGCTTCGGATGAATCGATC 59.018 52.381 0.00 0.00 38.34 3.69
1907 1939 2.351253 CGAGCTTCGGATGAATCGATCT 60.351 50.000 0.00 0.00 38.34 2.75
1908 1940 3.120165 CGAGCTTCGGATGAATCGATCTA 60.120 47.826 0.00 0.00 38.34 1.98
1909 1941 4.438065 CGAGCTTCGGATGAATCGATCTAT 60.438 45.833 0.00 0.00 38.34 1.98
1910 1942 5.398603 AGCTTCGGATGAATCGATCTATT 57.601 39.130 0.00 0.00 36.49 1.73
1911 1943 6.516739 AGCTTCGGATGAATCGATCTATTA 57.483 37.500 0.00 0.00 36.49 0.98
1912 1944 7.106439 AGCTTCGGATGAATCGATCTATTAT 57.894 36.000 0.00 0.00 36.49 1.28
1913 1945 7.551585 AGCTTCGGATGAATCGATCTATTATT 58.448 34.615 0.00 0.00 36.49 1.40
1914 1946 7.490725 AGCTTCGGATGAATCGATCTATTATTG 59.509 37.037 0.00 0.00 36.49 1.90
1915 1947 7.254252 GCTTCGGATGAATCGATCTATTATTGG 60.254 40.741 0.00 0.00 36.49 3.16
1916 1948 6.573434 TCGGATGAATCGATCTATTATTGGG 58.427 40.000 0.00 0.00 0.00 4.12
1917 1949 5.235186 CGGATGAATCGATCTATTATTGGGC 59.765 44.000 0.00 0.00 0.00 5.36
1918 1950 6.115446 GGATGAATCGATCTATTATTGGGCA 58.885 40.000 0.00 0.00 0.00 5.36
1919 1951 6.599244 GGATGAATCGATCTATTATTGGGCAA 59.401 38.462 0.00 0.00 0.00 4.52
1920 1952 7.284034 GGATGAATCGATCTATTATTGGGCAAT 59.716 37.037 0.00 0.00 34.93 3.56
1921 1953 7.615582 TGAATCGATCTATTATTGGGCAATC 57.384 36.000 0.00 0.00 32.50 2.67
1922 1954 7.397221 TGAATCGATCTATTATTGGGCAATCT 58.603 34.615 0.00 0.00 32.50 2.40
1923 1955 7.884877 TGAATCGATCTATTATTGGGCAATCTT 59.115 33.333 0.00 0.00 32.50 2.40
1924 1956 9.383519 GAATCGATCTATTATTGGGCAATCTTA 57.616 33.333 0.00 0.00 32.50 2.10
1925 1957 9.911788 AATCGATCTATTATTGGGCAATCTTAT 57.088 29.630 0.00 0.00 32.50 1.73
1926 1958 9.911788 ATCGATCTATTATTGGGCAATCTTATT 57.088 29.630 0.00 0.00 32.50 1.40
1927 1959 9.166173 TCGATCTATTATTGGGCAATCTTATTG 57.834 33.333 0.00 0.00 32.50 1.90
1928 1960 8.400947 CGATCTATTATTGGGCAATCTTATTGG 58.599 37.037 2.11 0.00 32.50 3.16
1929 1961 8.599624 ATCTATTATTGGGCAATCTTATTGGG 57.400 34.615 2.11 0.00 32.50 4.12
1930 1962 7.764617 TCTATTATTGGGCAATCTTATTGGGA 58.235 34.615 2.11 0.00 32.50 4.37
1931 1963 8.231007 TCTATTATTGGGCAATCTTATTGGGAA 58.769 33.333 2.11 0.00 32.50 3.97
1932 1964 7.876978 ATTATTGGGCAATCTTATTGGGAAT 57.123 32.000 2.11 0.00 32.50 3.01
1933 1965 8.971032 ATTATTGGGCAATCTTATTGGGAATA 57.029 30.769 2.11 0.00 32.50 1.75
1934 1966 8.789767 TTATTGGGCAATCTTATTGGGAATAA 57.210 30.769 2.11 0.00 32.50 1.40
1935 1967 6.478512 TTGGGCAATCTTATTGGGAATAAC 57.521 37.500 2.11 0.00 30.58 1.89
1936 1968 5.523588 TGGGCAATCTTATTGGGAATAACA 58.476 37.500 2.11 0.00 30.58 2.41
1937 1969 6.142498 TGGGCAATCTTATTGGGAATAACAT 58.858 36.000 2.11 0.00 30.58 2.71
1938 1970 6.041865 TGGGCAATCTTATTGGGAATAACATG 59.958 38.462 0.00 0.00 30.58 3.21
1939 1971 6.458210 GGCAATCTTATTGGGAATAACATGG 58.542 40.000 0.00 0.00 30.58 3.66
1940 1972 6.458210 GCAATCTTATTGGGAATAACATGGG 58.542 40.000 0.00 0.00 30.58 4.00
1941 1973 6.458210 CAATCTTATTGGGAATAACATGGGC 58.542 40.000 0.00 0.00 30.58 5.36
1942 1974 5.402054 TCTTATTGGGAATAACATGGGCT 57.598 39.130 0.00 0.00 30.58 5.19
1943 1975 5.776358 TCTTATTGGGAATAACATGGGCTT 58.224 37.500 0.00 0.00 30.58 4.35
1944 1976 5.833131 TCTTATTGGGAATAACATGGGCTTC 59.167 40.000 0.00 0.00 30.58 3.86
1945 1977 2.452600 TGGGAATAACATGGGCTTCC 57.547 50.000 11.83 11.83 37.11 3.46
1946 1978 1.643286 TGGGAATAACATGGGCTTCCA 59.357 47.619 18.45 7.87 45.91 3.53
1947 1979 2.031870 GGGAATAACATGGGCTTCCAC 58.968 52.381 18.45 8.76 44.44 4.02
1948 1980 2.358195 GGGAATAACATGGGCTTCCACT 60.358 50.000 18.45 0.00 44.44 4.00
1949 1981 3.117663 GGGAATAACATGGGCTTCCACTA 60.118 47.826 18.45 0.00 44.44 2.74
1950 1982 3.883489 GGAATAACATGGGCTTCCACTAC 59.117 47.826 14.21 0.00 44.44 2.73
1951 1983 4.523083 GAATAACATGGGCTTCCACTACA 58.477 43.478 0.00 0.00 44.44 2.74
1952 1984 2.496899 AACATGGGCTTCCACTACAG 57.503 50.000 0.00 0.00 44.44 2.74
1953 1985 0.620556 ACATGGGCTTCCACTACAGG 59.379 55.000 0.00 0.00 44.44 4.00
1954 1986 0.911769 CATGGGCTTCCACTACAGGA 59.088 55.000 0.00 0.00 44.44 3.86
1955 1987 1.281867 CATGGGCTTCCACTACAGGAA 59.718 52.381 0.00 0.00 44.44 3.36
1956 1988 1.440618 TGGGCTTCCACTACAGGAAA 58.559 50.000 0.00 0.00 46.44 3.13
1957 1989 1.073284 TGGGCTTCCACTACAGGAAAC 59.927 52.381 0.00 0.00 46.44 2.78
1958 1990 1.073284 GGGCTTCCACTACAGGAAACA 59.927 52.381 0.00 0.00 46.44 2.83
1959 1991 2.427506 GGCTTCCACTACAGGAAACAG 58.572 52.381 0.00 0.00 46.44 3.16
1960 1992 1.807142 GCTTCCACTACAGGAAACAGC 59.193 52.381 0.00 0.00 46.44 4.40
1961 1993 2.551071 GCTTCCACTACAGGAAACAGCT 60.551 50.000 0.00 0.00 46.44 4.24
1962 1994 3.306780 GCTTCCACTACAGGAAACAGCTA 60.307 47.826 0.00 0.00 46.44 3.32
1963 1995 3.955650 TCCACTACAGGAAACAGCTAC 57.044 47.619 0.00 0.00 33.93 3.58
1964 1996 3.507411 TCCACTACAGGAAACAGCTACT 58.493 45.455 0.00 0.00 33.93 2.57
1965 1997 3.901844 TCCACTACAGGAAACAGCTACTT 59.098 43.478 0.00 0.00 33.93 2.24
1966 1998 4.347000 TCCACTACAGGAAACAGCTACTTT 59.653 41.667 0.00 0.00 33.93 2.66
1967 1999 4.452455 CCACTACAGGAAACAGCTACTTTG 59.548 45.833 0.00 0.00 0.00 2.77
1968 2000 4.065789 ACTACAGGAAACAGCTACTTTGC 58.934 43.478 0.00 0.00 0.00 3.68
1969 2001 2.230660 ACAGGAAACAGCTACTTTGCC 58.769 47.619 4.50 0.00 0.00 4.52
1970 2002 1.197721 CAGGAAACAGCTACTTTGCCG 59.802 52.381 4.50 0.00 0.00 5.69
1971 2003 1.202770 AGGAAACAGCTACTTTGCCGT 60.203 47.619 4.50 0.00 0.00 5.68
1972 2004 1.197036 GGAAACAGCTACTTTGCCGTC 59.803 52.381 0.00 0.00 0.00 4.79
1973 2005 2.143925 GAAACAGCTACTTTGCCGTCT 58.856 47.619 0.00 0.00 0.00 4.18
1974 2006 1.512926 AACAGCTACTTTGCCGTCTG 58.487 50.000 0.00 0.00 0.00 3.51
1975 2007 0.951040 ACAGCTACTTTGCCGTCTGC 60.951 55.000 0.00 0.00 41.77 4.26
1976 2008 1.376037 AGCTACTTTGCCGTCTGCC 60.376 57.895 0.00 0.00 40.16 4.85
1977 2009 1.671054 GCTACTTTGCCGTCTGCCA 60.671 57.895 0.00 0.00 40.16 4.92
1978 2010 1.912371 GCTACTTTGCCGTCTGCCAC 61.912 60.000 0.00 0.00 40.16 5.01
1998 2030 4.735132 CGGACGGCAAAGGCTCGA 62.735 66.667 0.00 0.00 40.87 4.04
1999 2031 2.358247 GGACGGCAAAGGCTCGAA 60.358 61.111 0.00 0.00 40.87 3.71
2000 2032 1.964373 GGACGGCAAAGGCTCGAAA 60.964 57.895 0.00 0.00 40.87 3.46
2001 2033 1.497722 GACGGCAAAGGCTCGAAAG 59.502 57.895 0.00 0.00 40.87 2.62
2002 2034 1.912371 GACGGCAAAGGCTCGAAAGG 61.912 60.000 0.00 0.00 40.87 3.11
2011 2043 4.735132 CTCGAAAGGCGGACGGCA 62.735 66.667 20.23 0.00 46.16 5.69
2012 2044 4.302509 TCGAAAGGCGGACGGCAA 62.303 61.111 20.23 0.00 46.16 4.52
2013 2045 3.350612 CGAAAGGCGGACGGCAAA 61.351 61.111 20.23 0.00 46.16 3.68
2014 2046 2.561373 GAAAGGCGGACGGCAAAG 59.439 61.111 20.23 0.00 46.16 2.77
2015 2047 1.964373 GAAAGGCGGACGGCAAAGA 60.964 57.895 20.23 0.00 46.16 2.52
2016 2048 2.183858 GAAAGGCGGACGGCAAAGAC 62.184 60.000 20.23 3.62 46.16 3.01
2017 2049 4.699522 AGGCGGACGGCAAAGACC 62.700 66.667 20.23 0.00 46.16 3.85
2018 2050 4.699522 GGCGGACGGCAAAGACCT 62.700 66.667 13.57 0.00 46.16 3.85
2019 2051 2.668550 GCGGACGGCAAAGACCTT 60.669 61.111 0.00 0.00 42.87 3.50
2020 2052 2.258726 GCGGACGGCAAAGACCTTT 61.259 57.895 0.00 0.00 42.87 3.11
2029 2061 0.040067 CAAAGACCTTTGCCGTCAGC 60.040 55.000 9.25 0.00 42.66 4.26
2030 2062 1.172812 AAAGACCTTTGCCGTCAGCC 61.173 55.000 0.00 0.00 42.71 4.85
2031 2063 3.423154 GACCTTTGCCGTCAGCCG 61.423 66.667 0.00 0.00 42.71 5.52
2048 2080 4.103103 GCGGACGGCAAAAGGCTC 62.103 66.667 0.00 0.00 44.01 4.70
2049 2081 3.431725 CGGACGGCAAAAGGCTCC 61.432 66.667 0.00 0.00 44.01 4.70
2051 2083 3.431725 GACGGCAAAAGGCTCCGG 61.432 66.667 15.66 0.00 46.78 5.14
2054 2086 3.302344 GGCAAAAGGCTCCGGCAA 61.302 61.111 0.00 0.00 44.01 4.52
2055 2087 2.733945 GCAAAAGGCTCCGGCAAA 59.266 55.556 0.00 0.00 40.87 3.68
2056 2088 1.373371 GCAAAAGGCTCCGGCAAAG 60.373 57.895 0.00 0.00 40.87 2.77
2057 2089 1.805428 GCAAAAGGCTCCGGCAAAGA 61.805 55.000 0.00 0.00 40.87 2.52
2058 2090 0.673437 CAAAAGGCTCCGGCAAAGAA 59.327 50.000 0.00 0.00 40.87 2.52
2059 2091 0.673985 AAAAGGCTCCGGCAAAGAAC 59.326 50.000 0.00 0.00 40.87 3.01
2060 2092 1.515521 AAAGGCTCCGGCAAAGAACG 61.516 55.000 0.00 0.00 40.87 3.95
2061 2093 4.103103 GGCTCCGGCAAAGAACGC 62.103 66.667 0.00 0.00 40.87 4.84
2062 2094 3.050275 GCTCCGGCAAAGAACGCT 61.050 61.111 0.00 0.00 38.54 5.07
2063 2095 1.740296 GCTCCGGCAAAGAACGCTA 60.740 57.895 0.00 0.00 38.54 4.26
2064 2096 1.967597 GCTCCGGCAAAGAACGCTAC 61.968 60.000 0.00 0.00 38.54 3.58
2065 2097 1.683790 CTCCGGCAAAGAACGCTACG 61.684 60.000 0.00 0.00 0.00 3.51
2066 2098 2.736682 CCGGCAAAGAACGCTACGG 61.737 63.158 0.00 0.00 0.00 4.02
2067 2099 2.025418 CGGCAAAGAACGCTACGGT 61.025 57.895 0.00 0.00 0.00 4.83
2068 2100 0.733566 CGGCAAAGAACGCTACGGTA 60.734 55.000 0.00 0.00 0.00 4.02
2069 2101 1.431496 GGCAAAGAACGCTACGGTAA 58.569 50.000 0.00 0.00 0.00 2.85
2070 2102 1.799994 GGCAAAGAACGCTACGGTAAA 59.200 47.619 0.00 0.00 0.00 2.01
2071 2103 2.411935 GGCAAAGAACGCTACGGTAAAC 60.412 50.000 0.00 0.00 0.00 2.01
2072 2104 2.221517 GCAAAGAACGCTACGGTAAACA 59.778 45.455 0.00 0.00 0.00 2.83
2073 2105 3.303263 GCAAAGAACGCTACGGTAAACAA 60.303 43.478 0.00 0.00 0.00 2.83
2074 2106 4.206088 CAAAGAACGCTACGGTAAACAAC 58.794 43.478 0.00 0.00 0.00 3.32
2075 2107 3.375782 AGAACGCTACGGTAAACAACT 57.624 42.857 0.00 0.00 0.00 3.16
2076 2108 3.311966 AGAACGCTACGGTAAACAACTC 58.688 45.455 0.00 0.00 0.00 3.01
2077 2109 2.070262 ACGCTACGGTAAACAACTCC 57.930 50.000 0.00 0.00 0.00 3.85
2078 2110 1.615392 ACGCTACGGTAAACAACTCCT 59.385 47.619 0.00 0.00 0.00 3.69
2079 2111 2.036346 ACGCTACGGTAAACAACTCCTT 59.964 45.455 0.00 0.00 0.00 3.36
2080 2112 3.062042 CGCTACGGTAAACAACTCCTTT 58.938 45.455 0.00 0.00 0.00 3.11
2081 2113 3.120786 CGCTACGGTAAACAACTCCTTTG 60.121 47.826 0.00 0.00 41.49 2.77
2082 2114 3.364664 GCTACGGTAAACAACTCCTTTGC 60.365 47.826 0.00 0.00 39.01 3.68
2083 2115 1.951602 ACGGTAAACAACTCCTTTGCC 59.048 47.619 0.00 0.00 39.01 4.52
2084 2116 1.069500 CGGTAAACAACTCCTTTGCCG 60.069 52.381 6.11 6.11 45.99 5.69
2085 2117 1.951602 GGTAAACAACTCCTTTGCCGT 59.048 47.619 0.00 0.00 39.01 5.68
2086 2118 2.031420 GGTAAACAACTCCTTTGCCGTC 60.031 50.000 0.00 0.00 39.01 4.79
2087 2119 2.052782 AAACAACTCCTTTGCCGTCT 57.947 45.000 0.00 0.00 39.01 4.18
2088 2120 1.308998 AACAACTCCTTTGCCGTCTG 58.691 50.000 0.00 0.00 39.01 3.51
2089 2121 1.166531 ACAACTCCTTTGCCGTCTGC 61.167 55.000 0.00 0.00 39.01 4.26
2090 2122 0.886490 CAACTCCTTTGCCGTCTGCT 60.886 55.000 0.00 0.00 42.00 4.24
2091 2123 0.179018 AACTCCTTTGCCGTCTGCTT 60.179 50.000 0.00 0.00 42.00 3.91
2092 2124 0.603975 ACTCCTTTGCCGTCTGCTTC 60.604 55.000 0.00 0.00 42.00 3.86
2093 2125 1.301677 CTCCTTTGCCGTCTGCTTCC 61.302 60.000 0.00 0.00 42.00 3.46
2094 2126 1.302832 CCTTTGCCGTCTGCTTCCT 60.303 57.895 0.00 0.00 42.00 3.36
2095 2127 1.580845 CCTTTGCCGTCTGCTTCCTG 61.581 60.000 0.00 0.00 42.00 3.86
2096 2128 1.580845 CTTTGCCGTCTGCTTCCTGG 61.581 60.000 0.00 0.00 42.00 4.45
2097 2129 4.704833 TGCCGTCTGCTTCCTGGC 62.705 66.667 0.00 0.00 45.91 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 125 5.199982 TGGGGTTTTCTATTGATGCCTTA 57.800 39.130 0.00 0.00 0.00 2.69
811 835 5.200368 AGAGATTTGTTGCGGAATTTGTT 57.800 34.783 0.00 0.00 0.00 2.83
821 845 9.286946 CTAATTCTGAATCAAGAGATTTGTTGC 57.713 33.333 2.92 0.00 44.30 4.17
1031 1063 8.573035 CAGCCAGTAGAAAACCAAAATAACTAA 58.427 33.333 0.00 0.00 0.00 2.24
1075 1107 8.814038 ATCTTGTTCAAGCCAATAAATAGAGT 57.186 30.769 7.58 0.00 0.00 3.24
1216 1248 9.400638 GTACTCTAAATTATCCACGAATCTCAG 57.599 37.037 0.00 0.00 0.00 3.35
1245 1277 7.527568 AAAAGAGGTACGATCTATCCCTAAG 57.472 40.000 0.00 0.00 0.00 2.18
1422 1454 4.466726 AGGTGACAAGAGAGTTATGGTACC 59.533 45.833 4.43 4.43 0.00 3.34
1423 1455 5.662674 AGGTGACAAGAGAGTTATGGTAC 57.337 43.478 0.00 0.00 0.00 3.34
1424 1456 6.491383 AGTAGGTGACAAGAGAGTTATGGTA 58.509 40.000 0.00 0.00 0.00 3.25
1425 1457 5.334421 AGTAGGTGACAAGAGAGTTATGGT 58.666 41.667 0.00 0.00 0.00 3.55
1426 1458 5.923733 AGTAGGTGACAAGAGAGTTATGG 57.076 43.478 0.00 0.00 0.00 2.74
1427 1459 6.460399 GGCTAGTAGGTGACAAGAGAGTTATG 60.460 46.154 0.00 0.00 0.00 1.90
1428 1460 5.595133 GGCTAGTAGGTGACAAGAGAGTTAT 59.405 44.000 0.00 0.00 0.00 1.89
1429 1461 4.948621 GGCTAGTAGGTGACAAGAGAGTTA 59.051 45.833 0.00 0.00 0.00 2.24
1430 1462 3.764972 GGCTAGTAGGTGACAAGAGAGTT 59.235 47.826 0.00 0.00 0.00 3.01
1431 1463 3.358118 GGCTAGTAGGTGACAAGAGAGT 58.642 50.000 0.00 0.00 0.00 3.24
1432 1464 2.691011 GGGCTAGTAGGTGACAAGAGAG 59.309 54.545 0.00 0.00 0.00 3.20
1433 1465 2.736347 GGGCTAGTAGGTGACAAGAGA 58.264 52.381 0.00 0.00 0.00 3.10
1434 1466 1.405821 CGGGCTAGTAGGTGACAAGAG 59.594 57.143 0.00 0.00 0.00 2.85
1435 1467 1.272313 ACGGGCTAGTAGGTGACAAGA 60.272 52.381 0.00 0.00 0.00 3.02
1436 1468 1.134560 GACGGGCTAGTAGGTGACAAG 59.865 57.143 0.00 0.00 0.00 3.16
1437 1469 1.180029 GACGGGCTAGTAGGTGACAA 58.820 55.000 0.00 0.00 0.00 3.18
1438 1470 1.028330 CGACGGGCTAGTAGGTGACA 61.028 60.000 0.00 0.00 0.00 3.58
1439 1471 0.745845 TCGACGGGCTAGTAGGTGAC 60.746 60.000 0.00 0.00 0.00 3.67
1440 1472 0.182061 ATCGACGGGCTAGTAGGTGA 59.818 55.000 0.00 0.00 0.00 4.02
1441 1473 1.888215 TATCGACGGGCTAGTAGGTG 58.112 55.000 0.00 0.00 0.00 4.00
1442 1474 2.818432 CAATATCGACGGGCTAGTAGGT 59.182 50.000 0.00 0.00 0.00 3.08
1443 1475 3.079578 TCAATATCGACGGGCTAGTAGG 58.920 50.000 0.00 0.00 0.00 3.18
1444 1476 4.761235 TTCAATATCGACGGGCTAGTAG 57.239 45.455 0.00 0.00 0.00 2.57
1445 1477 5.717078 AATTCAATATCGACGGGCTAGTA 57.283 39.130 0.00 0.00 0.00 1.82
1446 1478 4.602340 AATTCAATATCGACGGGCTAGT 57.398 40.909 0.00 0.00 0.00 2.57
1447 1479 8.188799 TCTATTAATTCAATATCGACGGGCTAG 58.811 37.037 0.00 0.00 0.00 3.42
1448 1480 8.058667 TCTATTAATTCAATATCGACGGGCTA 57.941 34.615 0.00 0.00 0.00 3.93
1449 1481 6.931838 TCTATTAATTCAATATCGACGGGCT 58.068 36.000 0.00 0.00 0.00 5.19
1450 1482 7.033791 TCTCTATTAATTCAATATCGACGGGC 58.966 38.462 0.00 0.00 0.00 6.13
1451 1483 8.981724 TTCTCTATTAATTCAATATCGACGGG 57.018 34.615 0.00 0.00 0.00 5.28
1471 1503 8.435982 CCTATCTCCCTTGTAAATGATTTCTCT 58.564 37.037 0.00 0.00 0.00 3.10
1472 1504 8.214364 ACCTATCTCCCTTGTAAATGATTTCTC 58.786 37.037 0.00 0.00 0.00 2.87
1473 1505 8.107196 ACCTATCTCCCTTGTAAATGATTTCT 57.893 34.615 0.00 0.00 0.00 2.52
1474 1506 8.753497 AACCTATCTCCCTTGTAAATGATTTC 57.247 34.615 0.00 0.00 0.00 2.17
1475 1507 9.853177 CTAACCTATCTCCCTTGTAAATGATTT 57.147 33.333 0.00 0.00 0.00 2.17
1476 1508 9.004231 ACTAACCTATCTCCCTTGTAAATGATT 57.996 33.333 0.00 0.00 0.00 2.57
1477 1509 8.568617 ACTAACCTATCTCCCTTGTAAATGAT 57.431 34.615 0.00 0.00 0.00 2.45
1478 1510 7.989947 ACTAACCTATCTCCCTTGTAAATGA 57.010 36.000 0.00 0.00 0.00 2.57
1479 1511 9.543783 GTAACTAACCTATCTCCCTTGTAAATG 57.456 37.037 0.00 0.00 0.00 2.32
1480 1512 8.419442 CGTAACTAACCTATCTCCCTTGTAAAT 58.581 37.037 0.00 0.00 0.00 1.40
1481 1513 7.397192 ACGTAACTAACCTATCTCCCTTGTAAA 59.603 37.037 0.00 0.00 0.00 2.01
1482 1514 6.891908 ACGTAACTAACCTATCTCCCTTGTAA 59.108 38.462 0.00 0.00 0.00 2.41
1483 1515 6.426587 ACGTAACTAACCTATCTCCCTTGTA 58.573 40.000 0.00 0.00 0.00 2.41
1484 1516 5.267587 ACGTAACTAACCTATCTCCCTTGT 58.732 41.667 0.00 0.00 0.00 3.16
1485 1517 5.848833 ACGTAACTAACCTATCTCCCTTG 57.151 43.478 0.00 0.00 0.00 3.61
1486 1518 6.864151 AAACGTAACTAACCTATCTCCCTT 57.136 37.500 0.00 0.00 0.00 3.95
1487 1519 9.819754 ATATAAACGTAACTAACCTATCTCCCT 57.180 33.333 0.00 0.00 0.00 4.20
1515 1547 9.302345 GTTATGTCACTAGATCTCGATTTTTCA 57.698 33.333 0.00 0.00 0.00 2.69
1516 1548 8.473016 CGTTATGTCACTAGATCTCGATTTTTC 58.527 37.037 0.00 0.00 0.00 2.29
1517 1549 7.043325 GCGTTATGTCACTAGATCTCGATTTTT 60.043 37.037 0.00 0.00 0.00 1.94
1518 1550 6.418226 GCGTTATGTCACTAGATCTCGATTTT 59.582 38.462 0.00 0.00 0.00 1.82
1519 1551 5.915758 GCGTTATGTCACTAGATCTCGATTT 59.084 40.000 0.00 0.00 0.00 2.17
1520 1552 5.008712 TGCGTTATGTCACTAGATCTCGATT 59.991 40.000 0.00 0.00 0.00 3.34
1521 1553 4.515567 TGCGTTATGTCACTAGATCTCGAT 59.484 41.667 0.00 0.00 0.00 3.59
1522 1554 3.875134 TGCGTTATGTCACTAGATCTCGA 59.125 43.478 0.00 0.00 0.00 4.04
1523 1555 4.210832 TGCGTTATGTCACTAGATCTCG 57.789 45.455 0.00 0.00 0.00 4.04
1524 1556 4.979197 CCTTGCGTTATGTCACTAGATCTC 59.021 45.833 0.00 0.00 0.00 2.75
1525 1557 4.402793 ACCTTGCGTTATGTCACTAGATCT 59.597 41.667 0.00 0.00 0.00 2.75
1526 1558 4.683832 ACCTTGCGTTATGTCACTAGATC 58.316 43.478 0.00 0.00 0.00 2.75
1527 1559 4.402793 AGACCTTGCGTTATGTCACTAGAT 59.597 41.667 0.00 0.00 0.00 1.98
1528 1560 3.762288 AGACCTTGCGTTATGTCACTAGA 59.238 43.478 0.00 0.00 0.00 2.43
1529 1561 4.111375 AGACCTTGCGTTATGTCACTAG 57.889 45.455 0.00 0.00 0.00 2.57
1530 1562 4.491676 GAAGACCTTGCGTTATGTCACTA 58.508 43.478 0.00 0.00 0.00 2.74
1531 1563 3.326747 GAAGACCTTGCGTTATGTCACT 58.673 45.455 0.00 0.00 0.00 3.41
1532 1564 2.415512 GGAAGACCTTGCGTTATGTCAC 59.584 50.000 0.00 0.00 0.00 3.67
1533 1565 2.037902 TGGAAGACCTTGCGTTATGTCA 59.962 45.455 0.00 0.00 37.04 3.58
1534 1566 2.695359 TGGAAGACCTTGCGTTATGTC 58.305 47.619 0.00 0.00 37.04 3.06
1535 1567 2.851263 TGGAAGACCTTGCGTTATGT 57.149 45.000 0.00 0.00 37.04 2.29
1536 1568 4.023193 ACTTTTGGAAGACCTTGCGTTATG 60.023 41.667 0.00 0.00 36.69 1.90
1537 1569 4.023193 CACTTTTGGAAGACCTTGCGTTAT 60.023 41.667 0.00 0.00 36.69 1.89
1538 1570 3.314080 CACTTTTGGAAGACCTTGCGTTA 59.686 43.478 0.00 0.00 36.69 3.18
1539 1571 2.099098 CACTTTTGGAAGACCTTGCGTT 59.901 45.455 0.00 0.00 36.69 4.84
1540 1572 1.676006 CACTTTTGGAAGACCTTGCGT 59.324 47.619 0.00 0.00 36.69 5.24
1541 1573 2.405892 CACTTTTGGAAGACCTTGCG 57.594 50.000 0.00 0.00 36.69 4.85
1551 1583 6.537453 TCAAAGATTTGTTCCACTTTTGGA 57.463 33.333 5.29 0.00 43.04 3.53
1552 1584 6.238184 GCTTCAAAGATTTGTTCCACTTTTGG 60.238 38.462 5.29 0.00 40.56 3.28
1553 1585 6.508404 CGCTTCAAAGATTTGTTCCACTTTTG 60.508 38.462 5.29 0.00 39.18 2.44
1554 1586 5.519927 CGCTTCAAAGATTTGTTCCACTTTT 59.480 36.000 5.29 0.00 39.18 2.27
1555 1587 5.043248 CGCTTCAAAGATTTGTTCCACTTT 58.957 37.500 5.29 0.00 39.18 2.66
1556 1588 4.610945 CGCTTCAAAGATTTGTTCCACTT 58.389 39.130 5.29 0.00 39.18 3.16
1557 1589 3.550842 GCGCTTCAAAGATTTGTTCCACT 60.551 43.478 0.00 0.00 39.18 4.00
1558 1590 2.726241 GCGCTTCAAAGATTTGTTCCAC 59.274 45.455 0.00 0.00 39.18 4.02
1559 1591 2.604373 CGCGCTTCAAAGATTTGTTCCA 60.604 45.455 5.56 0.00 39.18 3.53
1560 1592 1.978782 CGCGCTTCAAAGATTTGTTCC 59.021 47.619 5.56 0.00 39.18 3.62
1561 1593 2.650608 ACGCGCTTCAAAGATTTGTTC 58.349 42.857 5.73 0.00 39.18 3.18
1562 1594 2.774439 ACGCGCTTCAAAGATTTGTT 57.226 40.000 5.73 0.00 39.18 2.83
1563 1595 2.032799 TGAACGCGCTTCAAAGATTTGT 59.967 40.909 17.67 0.00 35.84 2.83
1564 1596 2.649516 TGAACGCGCTTCAAAGATTTG 58.350 42.857 17.67 0.00 35.84 2.32
1565 1597 3.347958 TTGAACGCGCTTCAAAGATTT 57.652 38.095 24.48 3.18 44.42 2.17
1572 1604 2.225255 TGAATCAATTGAACGCGCTTCA 59.775 40.909 13.09 13.25 37.08 3.02
1573 1605 2.850321 TGAATCAATTGAACGCGCTTC 58.150 42.857 13.09 10.81 0.00 3.86
1574 1606 2.987413 TGAATCAATTGAACGCGCTT 57.013 40.000 13.09 0.37 0.00 4.68
1575 1607 3.492421 AATGAATCAATTGAACGCGCT 57.508 38.095 13.09 0.00 0.00 5.92
1576 1608 4.379793 GGATAATGAATCAATTGAACGCGC 59.620 41.667 13.09 0.00 36.20 6.86
1577 1609 4.911610 GGGATAATGAATCAATTGAACGCG 59.088 41.667 13.09 3.53 36.20 6.01
1578 1610 5.222631 GGGGATAATGAATCAATTGAACGC 58.777 41.667 13.09 5.49 36.20 4.84
1579 1611 5.238432 TCGGGGATAATGAATCAATTGAACG 59.762 40.000 13.09 3.60 36.20 3.95
1580 1612 6.633500 TCGGGGATAATGAATCAATTGAAC 57.367 37.500 13.09 10.29 36.20 3.18
1581 1613 7.725397 AGATTCGGGGATAATGAATCAATTGAA 59.275 33.333 13.09 0.00 46.56 2.69
1582 1614 7.233632 AGATTCGGGGATAATGAATCAATTGA 58.766 34.615 11.26 11.26 46.56 2.57
1583 1615 7.458409 AGATTCGGGGATAATGAATCAATTG 57.542 36.000 14.44 0.00 46.56 2.32
1584 1616 6.372659 CGAGATTCGGGGATAATGAATCAATT 59.627 38.462 14.44 0.00 46.56 2.32
1585 1617 5.877012 CGAGATTCGGGGATAATGAATCAAT 59.123 40.000 14.44 0.00 46.56 2.57
1586 1618 5.011635 TCGAGATTCGGGGATAATGAATCAA 59.988 40.000 14.44 0.35 46.56 2.57
1587 1619 4.526650 TCGAGATTCGGGGATAATGAATCA 59.473 41.667 14.44 0.00 46.56 2.57
1588 1620 5.073311 TCGAGATTCGGGGATAATGAATC 57.927 43.478 6.15 6.15 45.23 2.52
1589 1621 5.483685 TTCGAGATTCGGGGATAATGAAT 57.516 39.130 0.00 0.00 40.88 2.57
1590 1622 4.948341 TTCGAGATTCGGGGATAATGAA 57.052 40.909 0.00 0.00 40.88 2.57
1591 1623 4.262463 CCTTTCGAGATTCGGGGATAATGA 60.262 45.833 0.00 0.00 40.88 2.57
1592 1624 3.997021 CCTTTCGAGATTCGGGGATAATG 59.003 47.826 0.00 0.00 40.88 1.90
1593 1625 3.901844 TCCTTTCGAGATTCGGGGATAAT 59.098 43.478 0.00 0.00 40.88 1.28
1594 1626 3.302161 TCCTTTCGAGATTCGGGGATAA 58.698 45.455 0.00 0.00 40.88 1.75
1595 1627 2.891580 CTCCTTTCGAGATTCGGGGATA 59.108 50.000 0.00 0.00 41.63 2.59
1596 1628 1.689273 CTCCTTTCGAGATTCGGGGAT 59.311 52.381 0.00 0.00 41.63 3.85
1597 1629 1.112113 CTCCTTTCGAGATTCGGGGA 58.888 55.000 0.00 4.21 41.63 4.81
1598 1630 1.112113 TCTCCTTTCGAGATTCGGGG 58.888 55.000 0.00 0.29 42.97 5.73
1605 1637 5.423015 CAATCCTCAATTCTCCTTTCGAGA 58.577 41.667 0.00 0.00 46.29 4.04
1606 1638 4.574013 CCAATCCTCAATTCTCCTTTCGAG 59.426 45.833 0.00 0.00 40.30 4.04
1607 1639 4.225042 TCCAATCCTCAATTCTCCTTTCGA 59.775 41.667 0.00 0.00 0.00 3.71
1608 1640 4.517285 TCCAATCCTCAATTCTCCTTTCG 58.483 43.478 0.00 0.00 0.00 3.46
1609 1641 6.604795 TCATTCCAATCCTCAATTCTCCTTTC 59.395 38.462 0.00 0.00 0.00 2.62
1610 1642 6.496743 TCATTCCAATCCTCAATTCTCCTTT 58.503 36.000 0.00 0.00 0.00 3.11
1611 1643 6.083487 TCATTCCAATCCTCAATTCTCCTT 57.917 37.500 0.00 0.00 0.00 3.36
1612 1644 5.692928 CTCATTCCAATCCTCAATTCTCCT 58.307 41.667 0.00 0.00 0.00 3.69
1613 1645 4.277921 GCTCATTCCAATCCTCAATTCTCC 59.722 45.833 0.00 0.00 0.00 3.71
1614 1646 4.024218 CGCTCATTCCAATCCTCAATTCTC 60.024 45.833 0.00 0.00 0.00 2.87
1615 1647 3.881688 CGCTCATTCCAATCCTCAATTCT 59.118 43.478 0.00 0.00 0.00 2.40
1616 1648 3.629398 ACGCTCATTCCAATCCTCAATTC 59.371 43.478 0.00 0.00 0.00 2.17
1617 1649 3.624777 ACGCTCATTCCAATCCTCAATT 58.375 40.909 0.00 0.00 0.00 2.32
1618 1650 3.287867 ACGCTCATTCCAATCCTCAAT 57.712 42.857 0.00 0.00 0.00 2.57
1619 1651 2.787473 ACGCTCATTCCAATCCTCAA 57.213 45.000 0.00 0.00 0.00 3.02
1620 1652 4.262463 GGTATACGCTCATTCCAATCCTCA 60.262 45.833 0.00 0.00 0.00 3.86
1621 1653 4.246458 GGTATACGCTCATTCCAATCCTC 58.754 47.826 0.00 0.00 0.00 3.71
1622 1654 3.646162 TGGTATACGCTCATTCCAATCCT 59.354 43.478 0.00 0.00 0.00 3.24
1623 1655 4.002906 TGGTATACGCTCATTCCAATCC 57.997 45.455 0.00 0.00 0.00 3.01
1624 1656 5.297547 TCTTGGTATACGCTCATTCCAATC 58.702 41.667 6.12 0.00 35.55 2.67
1625 1657 5.290493 TCTTGGTATACGCTCATTCCAAT 57.710 39.130 6.12 0.00 35.55 3.16
1626 1658 4.746535 TCTTGGTATACGCTCATTCCAA 57.253 40.909 0.00 5.70 35.04 3.53
1627 1659 4.746535 TTCTTGGTATACGCTCATTCCA 57.253 40.909 0.00 0.00 0.00 3.53
1628 1660 5.992217 AGAATTCTTGGTATACGCTCATTCC 59.008 40.000 0.88 0.00 0.00 3.01
1629 1661 7.484035 AAGAATTCTTGGTATACGCTCATTC 57.516 36.000 19.86 1.91 34.38 2.67
1644 1676 2.225369 CCAAGGGACCCCAAGAATTCTT 60.225 50.000 15.11 15.11 38.92 2.52
1645 1677 1.359130 CCAAGGGACCCCAAGAATTCT 59.641 52.381 7.00 0.88 38.92 2.40
1646 1678 1.619704 CCCAAGGGACCCCAAGAATTC 60.620 57.143 7.00 0.00 38.92 2.17
1647 1679 0.413434 CCCAAGGGACCCCAAGAATT 59.587 55.000 7.00 0.00 38.92 2.17
1648 1680 2.096168 CCCAAGGGACCCCAAGAAT 58.904 57.895 7.00 0.00 38.92 2.40
1649 1681 2.662971 TCCCCAAGGGACCCCAAGAA 62.663 60.000 7.00 0.00 46.17 2.52
1650 1682 3.135716 TCCCCAAGGGACCCCAAGA 62.136 63.158 7.00 0.00 46.17 3.02
1651 1683 2.534272 TCCCCAAGGGACCCCAAG 60.534 66.667 7.00 0.00 46.17 3.61
1659 1691 1.341383 CCAATCAAGAGTCCCCAAGGG 60.341 57.143 0.00 0.00 46.11 3.95
1660 1692 1.635487 TCCAATCAAGAGTCCCCAAGG 59.365 52.381 0.00 0.00 0.00 3.61
1661 1693 2.943199 GCTCCAATCAAGAGTCCCCAAG 60.943 54.545 0.00 0.00 33.69 3.61
1662 1694 1.004745 GCTCCAATCAAGAGTCCCCAA 59.995 52.381 0.00 0.00 33.69 4.12
1663 1695 0.620556 GCTCCAATCAAGAGTCCCCA 59.379 55.000 0.00 0.00 33.69 4.96
1664 1696 0.915364 AGCTCCAATCAAGAGTCCCC 59.085 55.000 0.00 0.00 33.69 4.81
1665 1697 1.556911 TCAGCTCCAATCAAGAGTCCC 59.443 52.381 0.00 0.00 33.69 4.46
1666 1698 2.903798 CTCAGCTCCAATCAAGAGTCC 58.096 52.381 0.00 0.00 33.69 3.85
1667 1699 2.093553 AGCTCAGCTCCAATCAAGAGTC 60.094 50.000 0.00 0.00 30.62 3.36
1668 1700 1.907936 AGCTCAGCTCCAATCAAGAGT 59.092 47.619 0.00 0.00 30.62 3.24
1669 1701 2.695127 AGCTCAGCTCCAATCAAGAG 57.305 50.000 0.00 0.00 30.62 2.85
1670 1702 3.369892 GGTTAGCTCAGCTCCAATCAAGA 60.370 47.826 0.00 0.00 40.44 3.02
1671 1703 2.941720 GGTTAGCTCAGCTCCAATCAAG 59.058 50.000 0.00 0.00 40.44 3.02
1672 1704 2.305635 TGGTTAGCTCAGCTCCAATCAA 59.694 45.455 0.00 0.00 40.44 2.57
1673 1705 1.908619 TGGTTAGCTCAGCTCCAATCA 59.091 47.619 0.00 0.00 40.44 2.57
1674 1706 2.698855 TGGTTAGCTCAGCTCCAATC 57.301 50.000 0.00 0.00 40.44 2.67
1675 1707 3.495806 GCTATGGTTAGCTCAGCTCCAAT 60.496 47.826 11.03 1.59 46.13 3.16
1676 1708 2.158900 GCTATGGTTAGCTCAGCTCCAA 60.159 50.000 11.03 0.00 46.13 3.53
1677 1709 1.414181 GCTATGGTTAGCTCAGCTCCA 59.586 52.381 0.00 5.86 46.13 3.86
1678 1710 2.162319 GCTATGGTTAGCTCAGCTCC 57.838 55.000 0.00 0.00 46.13 4.70
1687 1719 3.261981 ACGACTTTGGGCTATGGTTAG 57.738 47.619 0.00 0.00 0.00 2.34
1688 1720 4.652421 AGATACGACTTTGGGCTATGGTTA 59.348 41.667 0.00 0.00 0.00 2.85
1689 1721 3.454812 AGATACGACTTTGGGCTATGGTT 59.545 43.478 0.00 0.00 0.00 3.67
1690 1722 3.039011 AGATACGACTTTGGGCTATGGT 58.961 45.455 0.00 0.00 0.00 3.55
1691 1723 3.322254 AGAGATACGACTTTGGGCTATGG 59.678 47.826 0.00 0.00 0.00 2.74
1692 1724 4.592485 AGAGATACGACTTTGGGCTATG 57.408 45.455 0.00 0.00 0.00 2.23
1693 1725 5.360591 CAAAGAGATACGACTTTGGGCTAT 58.639 41.667 0.00 0.00 44.95 2.97
1694 1726 4.755411 CAAAGAGATACGACTTTGGGCTA 58.245 43.478 0.00 0.00 44.95 3.93
1695 1727 3.600388 CAAAGAGATACGACTTTGGGCT 58.400 45.455 0.00 0.00 44.95 5.19
1704 1736 9.893634 TGGATTTTATTAACCAAAGAGATACGA 57.106 29.630 0.00 0.00 0.00 3.43
1720 1752 8.638873 GGGATCGATAAACCTTTGGATTTTATT 58.361 33.333 0.00 0.00 0.00 1.40
1721 1753 7.782644 TGGGATCGATAAACCTTTGGATTTTAT 59.217 33.333 0.00 0.00 0.00 1.40
1722 1754 7.120051 TGGGATCGATAAACCTTTGGATTTTA 58.880 34.615 0.00 0.00 0.00 1.52
1723 1755 5.955355 TGGGATCGATAAACCTTTGGATTTT 59.045 36.000 0.00 0.00 0.00 1.82
1724 1756 5.515106 TGGGATCGATAAACCTTTGGATTT 58.485 37.500 0.00 0.00 0.00 2.17
1725 1757 5.124036 TGGGATCGATAAACCTTTGGATT 57.876 39.130 0.00 0.00 0.00 3.01
1726 1758 4.788925 TGGGATCGATAAACCTTTGGAT 57.211 40.909 0.00 0.00 0.00 3.41
1727 1759 4.523083 CTTGGGATCGATAAACCTTTGGA 58.477 43.478 0.00 0.00 0.00 3.53
1728 1760 3.632145 CCTTGGGATCGATAAACCTTTGG 59.368 47.826 0.00 2.34 0.00 3.28
1729 1761 3.632145 CCCTTGGGATCGATAAACCTTTG 59.368 47.826 0.00 0.00 0.00 2.77
1730 1762 3.898482 CCCTTGGGATCGATAAACCTTT 58.102 45.455 0.00 0.00 0.00 3.11
1731 1763 3.577805 CCCTTGGGATCGATAAACCTT 57.422 47.619 0.00 0.00 0.00 3.50
1745 1777 5.785423 TCTATTATGGATCTGTACCCCTTGG 59.215 44.000 0.00 0.00 37.80 3.61
1746 1778 6.270000 TGTCTATTATGGATCTGTACCCCTTG 59.730 42.308 0.00 0.00 0.00 3.61
1747 1779 6.390504 TGTCTATTATGGATCTGTACCCCTT 58.609 40.000 0.00 0.00 0.00 3.95
1748 1780 5.977533 TGTCTATTATGGATCTGTACCCCT 58.022 41.667 0.00 0.00 0.00 4.79
1749 1781 6.875972 ATGTCTATTATGGATCTGTACCCC 57.124 41.667 0.00 0.00 0.00 4.95
1750 1782 8.424918 CCATATGTCTATTATGGATCTGTACCC 58.575 40.741 1.24 0.00 42.43 3.69
1751 1783 9.201989 TCCATATGTCTATTATGGATCTGTACC 57.798 37.037 8.06 0.00 43.28 3.34
1754 1786 9.726652 ATCTCCATATGTCTATTATGGATCTGT 57.273 33.333 11.69 0.00 45.92 3.41
1783 1815 8.293867 GCACTTTTGATGTTACTTGGTGTATAA 58.706 33.333 0.00 0.00 0.00 0.98
1784 1816 7.360522 CGCACTTTTGATGTTACTTGGTGTATA 60.361 37.037 0.00 0.00 0.00 1.47
1785 1817 6.567701 CGCACTTTTGATGTTACTTGGTGTAT 60.568 38.462 0.00 0.00 0.00 2.29
1786 1818 5.277586 CGCACTTTTGATGTTACTTGGTGTA 60.278 40.000 0.00 0.00 0.00 2.90
1787 1819 4.497340 CGCACTTTTGATGTTACTTGGTGT 60.497 41.667 0.00 0.00 0.00 4.16
1788 1820 3.974401 CGCACTTTTGATGTTACTTGGTG 59.026 43.478 0.00 0.00 0.00 4.17
1789 1821 3.004315 CCGCACTTTTGATGTTACTTGGT 59.996 43.478 0.00 0.00 0.00 3.67
1790 1822 3.564511 CCGCACTTTTGATGTTACTTGG 58.435 45.455 0.00 0.00 0.00 3.61
1791 1823 3.004315 ACCCGCACTTTTGATGTTACTTG 59.996 43.478 0.00 0.00 0.00 3.16
1792 1824 3.219281 ACCCGCACTTTTGATGTTACTT 58.781 40.909 0.00 0.00 0.00 2.24
1793 1825 2.858745 ACCCGCACTTTTGATGTTACT 58.141 42.857 0.00 0.00 0.00 2.24
1794 1826 3.636282 AACCCGCACTTTTGATGTTAC 57.364 42.857 0.00 0.00 0.00 2.50
1795 1827 3.004944 GGAAACCCGCACTTTTGATGTTA 59.995 43.478 0.00 0.00 0.00 2.41
1796 1828 2.223947 GGAAACCCGCACTTTTGATGTT 60.224 45.455 0.00 0.00 0.00 2.71
1797 1829 1.339929 GGAAACCCGCACTTTTGATGT 59.660 47.619 0.00 0.00 0.00 3.06
1798 1830 1.665735 CGGAAACCCGCACTTTTGATG 60.666 52.381 0.00 0.00 40.66 3.07
1799 1831 0.596082 CGGAAACCCGCACTTTTGAT 59.404 50.000 0.00 0.00 40.66 2.57
1800 1832 0.464013 TCGGAAACCCGCACTTTTGA 60.464 50.000 0.00 0.00 46.35 2.69
1801 1833 0.382515 TTCGGAAACCCGCACTTTTG 59.617 50.000 0.00 0.00 46.35 2.44
1802 1834 0.666374 CTTCGGAAACCCGCACTTTT 59.334 50.000 0.00 0.00 46.35 2.27
1803 1835 0.179040 TCTTCGGAAACCCGCACTTT 60.179 50.000 0.00 0.00 46.35 2.66
1804 1836 0.036306 ATCTTCGGAAACCCGCACTT 59.964 50.000 0.00 0.00 46.35 3.16
1805 1837 0.673644 CATCTTCGGAAACCCGCACT 60.674 55.000 0.00 0.00 46.35 4.40
1806 1838 1.644786 CCATCTTCGGAAACCCGCAC 61.645 60.000 0.00 0.00 46.35 5.34
1807 1839 1.376683 CCATCTTCGGAAACCCGCA 60.377 57.895 0.00 0.00 46.35 5.69
1808 1840 0.675522 TTCCATCTTCGGAAACCCGC 60.676 55.000 0.00 0.00 46.35 6.13
1815 1847 5.614324 ACATTAGACATTCCATCTTCGGA 57.386 39.130 0.00 0.00 0.00 4.55
1816 1848 6.683974 AAACATTAGACATTCCATCTTCGG 57.316 37.500 0.00 0.00 0.00 4.30
1838 1870 5.122711 GTCCGATTAATTCCCAGTCGAAAAA 59.877 40.000 0.00 0.00 34.46 1.94
1839 1871 4.632688 GTCCGATTAATTCCCAGTCGAAAA 59.367 41.667 0.00 0.00 34.46 2.29
1840 1872 4.081309 AGTCCGATTAATTCCCAGTCGAAA 60.081 41.667 0.00 0.00 34.46 3.46
1841 1873 3.449737 AGTCCGATTAATTCCCAGTCGAA 59.550 43.478 0.00 0.00 34.46 3.71
1842 1874 3.028850 AGTCCGATTAATTCCCAGTCGA 58.971 45.455 0.00 0.00 34.46 4.20
1843 1875 3.454371 AGTCCGATTAATTCCCAGTCG 57.546 47.619 0.00 0.00 0.00 4.18
1844 1876 5.179555 GCAATAGTCCGATTAATTCCCAGTC 59.820 44.000 0.00 0.00 0.00 3.51
1845 1877 5.063880 GCAATAGTCCGATTAATTCCCAGT 58.936 41.667 0.00 0.00 0.00 4.00
1846 1878 4.152402 CGCAATAGTCCGATTAATTCCCAG 59.848 45.833 0.00 0.00 0.00 4.45
1847 1879 4.062293 CGCAATAGTCCGATTAATTCCCA 58.938 43.478 0.00 0.00 0.00 4.37
1848 1880 4.312443 TCGCAATAGTCCGATTAATTCCC 58.688 43.478 0.00 0.00 0.00 3.97
1849 1881 4.143094 GCTCGCAATAGTCCGATTAATTCC 60.143 45.833 0.00 0.00 32.52 3.01
1850 1882 4.433022 CGCTCGCAATAGTCCGATTAATTC 60.433 45.833 0.00 0.00 32.52 2.17
1851 1883 3.428870 CGCTCGCAATAGTCCGATTAATT 59.571 43.478 0.00 0.00 32.52 1.40
1852 1884 2.987149 CGCTCGCAATAGTCCGATTAAT 59.013 45.455 0.00 0.00 32.52 1.40
1853 1885 2.390938 CGCTCGCAATAGTCCGATTAA 58.609 47.619 0.00 0.00 32.52 1.40
1854 1886 1.335597 CCGCTCGCAATAGTCCGATTA 60.336 52.381 0.00 0.00 32.52 1.75
1855 1887 0.597637 CCGCTCGCAATAGTCCGATT 60.598 55.000 0.00 0.00 32.52 3.34
1856 1888 1.007271 CCGCTCGCAATAGTCCGAT 60.007 57.895 0.00 0.00 32.52 4.18
1857 1889 1.659622 TTCCGCTCGCAATAGTCCGA 61.660 55.000 0.00 0.00 0.00 4.55
1858 1890 0.804544 TTTCCGCTCGCAATAGTCCG 60.805 55.000 0.00 0.00 0.00 4.79
1859 1891 0.931005 CTTTCCGCTCGCAATAGTCC 59.069 55.000 0.00 0.00 0.00 3.85
1860 1892 1.855360 CTCTTTCCGCTCGCAATAGTC 59.145 52.381 0.00 0.00 0.00 2.59
1861 1893 1.927895 CTCTTTCCGCTCGCAATAGT 58.072 50.000 0.00 0.00 0.00 2.12
1862 1894 0.579156 GCTCTTTCCGCTCGCAATAG 59.421 55.000 0.00 0.00 0.00 1.73
1863 1895 0.108377 TGCTCTTTCCGCTCGCAATA 60.108 50.000 0.00 0.00 0.00 1.90
1864 1896 1.364626 CTGCTCTTTCCGCTCGCAAT 61.365 55.000 0.00 0.00 0.00 3.56
1865 1897 2.029288 CTGCTCTTTCCGCTCGCAA 61.029 57.895 0.00 0.00 0.00 4.85
1866 1898 2.433145 CTGCTCTTTCCGCTCGCA 60.433 61.111 0.00 0.00 0.00 5.10
1867 1899 3.191539 CCTGCTCTTTCCGCTCGC 61.192 66.667 0.00 0.00 0.00 5.03
1868 1900 1.807573 GTCCTGCTCTTTCCGCTCG 60.808 63.158 0.00 0.00 0.00 5.03
1869 1901 1.807573 CGTCCTGCTCTTTCCGCTC 60.808 63.158 0.00 0.00 0.00 5.03
1870 1902 2.219325 CTCGTCCTGCTCTTTCCGCT 62.219 60.000 0.00 0.00 0.00 5.52
1871 1903 1.807573 CTCGTCCTGCTCTTTCCGC 60.808 63.158 0.00 0.00 0.00 5.54
1872 1904 1.807573 GCTCGTCCTGCTCTTTCCG 60.808 63.158 0.00 0.00 0.00 4.30
1873 1905 0.036858 AAGCTCGTCCTGCTCTTTCC 60.037 55.000 0.00 0.00 40.22 3.13
1874 1906 1.355005 GAAGCTCGTCCTGCTCTTTC 58.645 55.000 0.00 0.00 40.22 2.62
1875 1907 0.389166 CGAAGCTCGTCCTGCTCTTT 60.389 55.000 0.00 0.00 40.22 2.52
1876 1908 1.214062 CGAAGCTCGTCCTGCTCTT 59.786 57.895 0.00 0.00 40.22 2.85
1877 1909 2.705821 CCGAAGCTCGTCCTGCTCT 61.706 63.158 0.00 0.00 40.22 4.09
1878 1910 2.010582 ATCCGAAGCTCGTCCTGCTC 62.011 60.000 0.00 0.00 40.22 4.26
1879 1911 2.055042 ATCCGAAGCTCGTCCTGCT 61.055 57.895 0.00 0.00 43.32 4.24
1880 1912 1.880340 CATCCGAAGCTCGTCCTGC 60.880 63.158 0.00 0.00 38.40 4.85
1881 1913 0.173481 TTCATCCGAAGCTCGTCCTG 59.827 55.000 0.00 0.00 38.40 3.86
1882 1914 1.067821 GATTCATCCGAAGCTCGTCCT 59.932 52.381 0.00 0.00 38.40 3.85
1883 1915 1.492720 GATTCATCCGAAGCTCGTCC 58.507 55.000 0.00 0.00 38.40 4.79
1884 1916 1.124462 CGATTCATCCGAAGCTCGTC 58.876 55.000 0.00 0.00 38.40 4.20
1885 1917 0.738975 TCGATTCATCCGAAGCTCGT 59.261 50.000 0.00 0.00 38.40 4.18
1886 1918 1.982223 GATCGATTCATCCGAAGCTCG 59.018 52.381 0.00 0.00 39.62 5.03
1887 1919 3.296322 AGATCGATTCATCCGAAGCTC 57.704 47.619 0.00 0.00 39.62 4.09
1888 1920 5.398603 AATAGATCGATTCATCCGAAGCT 57.601 39.130 0.00 0.00 39.62 3.74
1889 1921 7.254252 CCAATAATAGATCGATTCATCCGAAGC 60.254 40.741 4.16 0.00 39.62 3.86
1890 1922 7.223582 CCCAATAATAGATCGATTCATCCGAAG 59.776 40.741 4.16 0.00 39.62 3.79
1891 1923 7.041721 CCCAATAATAGATCGATTCATCCGAA 58.958 38.462 4.16 0.00 39.62 4.30
1892 1924 6.573434 CCCAATAATAGATCGATTCATCCGA 58.427 40.000 4.16 0.00 40.53 4.55
1893 1925 5.235186 GCCCAATAATAGATCGATTCATCCG 59.765 44.000 4.16 0.00 0.00 4.18
1894 1926 6.115446 TGCCCAATAATAGATCGATTCATCC 58.885 40.000 4.16 0.00 0.00 3.51
1895 1927 7.615582 TTGCCCAATAATAGATCGATTCATC 57.384 36.000 4.16 0.00 0.00 2.92
1896 1928 8.051535 AGATTGCCCAATAATAGATCGATTCAT 58.948 33.333 4.16 0.00 0.00 2.57
1897 1929 7.397221 AGATTGCCCAATAATAGATCGATTCA 58.603 34.615 4.16 0.00 0.00 2.57
1898 1930 7.856145 AGATTGCCCAATAATAGATCGATTC 57.144 36.000 4.16 0.00 0.00 2.52
1899 1931 9.911788 ATAAGATTGCCCAATAATAGATCGATT 57.088 29.630 0.00 6.31 0.00 3.34
1900 1932 9.911788 AATAAGATTGCCCAATAATAGATCGAT 57.088 29.630 0.00 0.00 0.00 3.59
1901 1933 9.166173 CAATAAGATTGCCCAATAATAGATCGA 57.834 33.333 0.00 0.00 0.00 3.59
1902 1934 8.400947 CCAATAAGATTGCCCAATAATAGATCG 58.599 37.037 0.00 0.00 0.00 3.69
1903 1935 8.689972 CCCAATAAGATTGCCCAATAATAGATC 58.310 37.037 0.00 0.00 0.00 2.75
1904 1936 8.401105 TCCCAATAAGATTGCCCAATAATAGAT 58.599 33.333 0.00 0.00 0.00 1.98
1905 1937 7.764617 TCCCAATAAGATTGCCCAATAATAGA 58.235 34.615 0.00 0.00 0.00 1.98
1906 1938 8.421249 TTCCCAATAAGATTGCCCAATAATAG 57.579 34.615 0.00 0.00 0.00 1.73
1907 1939 8.971032 ATTCCCAATAAGATTGCCCAATAATA 57.029 30.769 0.00 0.00 0.00 0.98
1908 1940 7.876978 ATTCCCAATAAGATTGCCCAATAAT 57.123 32.000 0.00 0.00 0.00 1.28
1909 1941 8.646900 GTTATTCCCAATAAGATTGCCCAATAA 58.353 33.333 0.00 1.03 34.23 1.40
1910 1942 7.786943 TGTTATTCCCAATAAGATTGCCCAATA 59.213 33.333 0.00 0.00 34.23 1.90
1911 1943 6.614906 TGTTATTCCCAATAAGATTGCCCAAT 59.385 34.615 0.00 0.00 34.23 3.16
1912 1944 5.960811 TGTTATTCCCAATAAGATTGCCCAA 59.039 36.000 0.00 0.00 34.23 4.12
1913 1945 5.523588 TGTTATTCCCAATAAGATTGCCCA 58.476 37.500 0.00 0.00 34.23 5.36
1914 1946 6.458210 CATGTTATTCCCAATAAGATTGCCC 58.542 40.000 0.00 0.00 35.78 5.36
1915 1947 6.458210 CCATGTTATTCCCAATAAGATTGCC 58.542 40.000 0.00 0.00 35.78 4.52
1916 1948 6.458210 CCCATGTTATTCCCAATAAGATTGC 58.542 40.000 0.00 0.00 35.78 3.56
1917 1949 6.268387 AGCCCATGTTATTCCCAATAAGATTG 59.732 38.462 0.00 0.00 35.78 2.67
1918 1950 6.384603 AGCCCATGTTATTCCCAATAAGATT 58.615 36.000 0.00 0.00 35.78 2.40
1919 1951 5.969086 AGCCCATGTTATTCCCAATAAGAT 58.031 37.500 0.00 0.00 37.70 2.40
1920 1952 5.402054 AGCCCATGTTATTCCCAATAAGA 57.598 39.130 0.00 0.00 34.23 2.10
1921 1953 5.011023 GGAAGCCCATGTTATTCCCAATAAG 59.989 44.000 8.25 0.00 36.08 1.73
1922 1954 4.898861 GGAAGCCCATGTTATTCCCAATAA 59.101 41.667 8.25 0.00 36.08 1.40
1923 1955 4.078922 TGGAAGCCCATGTTATTCCCAATA 60.079 41.667 14.20 0.00 40.45 1.90
1924 1956 3.308401 GGAAGCCCATGTTATTCCCAAT 58.692 45.455 8.25 0.00 36.08 3.16
1925 1957 2.043664 TGGAAGCCCATGTTATTCCCAA 59.956 45.455 14.20 0.00 40.45 4.12
1926 1958 1.643286 TGGAAGCCCATGTTATTCCCA 59.357 47.619 14.20 2.80 40.45 4.37
1927 1959 2.031870 GTGGAAGCCCATGTTATTCCC 58.968 52.381 14.20 5.66 45.68 3.97
1928 1960 3.018423 AGTGGAAGCCCATGTTATTCC 57.982 47.619 11.30 11.30 45.68 3.01
1929 1961 4.523083 TGTAGTGGAAGCCCATGTTATTC 58.477 43.478 0.00 0.00 45.68 1.75
1930 1962 4.526970 CTGTAGTGGAAGCCCATGTTATT 58.473 43.478 0.00 0.00 45.68 1.40
1931 1963 3.117888 CCTGTAGTGGAAGCCCATGTTAT 60.118 47.826 0.00 0.00 45.68 1.89
1932 1964 2.238646 CCTGTAGTGGAAGCCCATGTTA 59.761 50.000 0.00 0.00 45.68 2.41
1933 1965 1.004745 CCTGTAGTGGAAGCCCATGTT 59.995 52.381 0.00 0.00 45.68 2.71
1934 1966 0.620556 CCTGTAGTGGAAGCCCATGT 59.379 55.000 0.00 0.00 45.68 3.21
1935 1967 0.911769 TCCTGTAGTGGAAGCCCATG 59.088 55.000 0.00 0.00 45.68 3.66
1936 1968 1.668826 TTCCTGTAGTGGAAGCCCAT 58.331 50.000 0.00 0.00 45.68 4.00
1937 1969 1.073284 GTTTCCTGTAGTGGAAGCCCA 59.927 52.381 0.00 0.00 45.58 5.36
1938 1970 1.073284 TGTTTCCTGTAGTGGAAGCCC 59.927 52.381 7.47 0.00 45.58 5.19
1939 1971 2.427506 CTGTTTCCTGTAGTGGAAGCC 58.572 52.381 7.47 0.00 45.58 4.35
1940 1972 1.807142 GCTGTTTCCTGTAGTGGAAGC 59.193 52.381 0.00 0.00 45.58 3.86
1941 1973 3.409026 AGCTGTTTCCTGTAGTGGAAG 57.591 47.619 0.00 0.00 45.58 3.46
1942 1974 3.901844 AGTAGCTGTTTCCTGTAGTGGAA 59.098 43.478 0.00 0.00 43.63 3.53
1943 1975 3.507411 AGTAGCTGTTTCCTGTAGTGGA 58.493 45.455 0.00 0.00 0.00 4.02
1944 1976 3.963428 AGTAGCTGTTTCCTGTAGTGG 57.037 47.619 0.00 0.00 0.00 4.00
1945 1977 4.083802 GCAAAGTAGCTGTTTCCTGTAGTG 60.084 45.833 0.00 0.00 0.00 2.74
1946 1978 4.065789 GCAAAGTAGCTGTTTCCTGTAGT 58.934 43.478 0.00 0.00 0.00 2.73
1947 1979 3.437049 GGCAAAGTAGCTGTTTCCTGTAG 59.563 47.826 0.00 0.00 34.17 2.74
1948 1980 3.408634 GGCAAAGTAGCTGTTTCCTGTA 58.591 45.455 0.00 0.00 34.17 2.74
1949 1981 2.230660 GGCAAAGTAGCTGTTTCCTGT 58.769 47.619 0.00 0.00 34.17 4.00
1950 1982 1.197721 CGGCAAAGTAGCTGTTTCCTG 59.802 52.381 0.00 0.00 36.15 3.86
1951 1983 1.523758 CGGCAAAGTAGCTGTTTCCT 58.476 50.000 0.00 0.00 36.15 3.36
1957 1989 1.790387 GCAGACGGCAAAGTAGCTG 59.210 57.895 0.00 0.00 46.31 4.24
1958 1990 2.111999 TGGCAGACGGCAAAGTAGCT 62.112 55.000 0.00 0.00 46.20 3.32
1959 1991 1.671054 TGGCAGACGGCAAAGTAGC 60.671 57.895 0.00 0.00 46.20 3.58
1960 1992 4.693532 TGGCAGACGGCAAAGTAG 57.306 55.556 0.00 0.00 46.20 2.57
1981 2013 4.735132 TCGAGCCTTTGCCGTCCG 62.735 66.667 0.00 0.00 38.69 4.79
1982 2014 1.912371 CTTTCGAGCCTTTGCCGTCC 61.912 60.000 0.00 0.00 38.69 4.79
1983 2015 1.497722 CTTTCGAGCCTTTGCCGTC 59.502 57.895 0.00 0.00 38.69 4.79
1984 2016 1.966451 CCTTTCGAGCCTTTGCCGT 60.966 57.895 0.00 0.00 38.69 5.68
1985 2017 2.870372 CCTTTCGAGCCTTTGCCG 59.130 61.111 0.00 0.00 38.69 5.69
1986 2018 2.568612 GCCTTTCGAGCCTTTGCC 59.431 61.111 0.00 0.00 38.69 4.52
1987 2019 2.176792 CGCCTTTCGAGCCTTTGC 59.823 61.111 0.00 0.00 41.67 3.68
1988 2020 1.671054 TCCGCCTTTCGAGCCTTTG 60.671 57.895 0.00 0.00 41.67 2.77
1989 2021 1.671379 GTCCGCCTTTCGAGCCTTT 60.671 57.895 0.00 0.00 41.67 3.11
1990 2022 2.047179 GTCCGCCTTTCGAGCCTT 60.047 61.111 0.00 0.00 41.67 4.35
1991 2023 4.436998 CGTCCGCCTTTCGAGCCT 62.437 66.667 0.00 0.00 41.67 4.58
1994 2026 4.735132 TGCCGTCCGCCTTTCGAG 62.735 66.667 0.00 0.00 41.67 4.04
1995 2027 3.811118 TTTGCCGTCCGCCTTTCGA 62.811 57.895 0.00 0.00 41.67 3.71
1996 2028 3.308878 CTTTGCCGTCCGCCTTTCG 62.309 63.158 0.00 0.00 36.24 3.46
1997 2029 1.964373 TCTTTGCCGTCCGCCTTTC 60.964 57.895 0.00 0.00 36.24 2.62
1998 2030 2.112297 TCTTTGCCGTCCGCCTTT 59.888 55.556 0.00 0.00 36.24 3.11
1999 2031 2.668550 GTCTTTGCCGTCCGCCTT 60.669 61.111 0.00 0.00 36.24 4.35
2000 2032 4.699522 GGTCTTTGCCGTCCGCCT 62.700 66.667 0.00 0.00 36.24 5.52
2001 2033 4.699522 AGGTCTTTGCCGTCCGCC 62.700 66.667 0.00 0.00 36.24 6.13
2002 2034 2.258726 AAAGGTCTTTGCCGTCCGC 61.259 57.895 0.00 0.00 38.31 5.54
2003 2035 1.574428 CAAAGGTCTTTGCCGTCCG 59.426 57.895 10.05 0.00 42.66 4.79
2011 2043 1.172812 GGCTGACGGCAAAGGTCTTT 61.173 55.000 8.86 0.00 44.01 2.52
2012 2044 1.600916 GGCTGACGGCAAAGGTCTT 60.601 57.895 8.86 0.00 44.01 3.01
2013 2045 2.032681 GGCTGACGGCAAAGGTCT 59.967 61.111 8.86 0.00 44.01 3.85
2014 2046 3.423154 CGGCTGACGGCAAAGGTC 61.423 66.667 8.86 0.00 44.01 3.85
2031 2063 4.103103 GAGCCTTTTGCCGTCCGC 62.103 66.667 0.00 0.00 42.71 5.54
2032 2064 3.431725 GGAGCCTTTTGCCGTCCG 61.432 66.667 0.00 0.00 42.71 4.79
2033 2065 3.431725 CGGAGCCTTTTGCCGTCC 61.432 66.667 0.00 0.00 42.71 4.79
2034 2066 3.431725 CCGGAGCCTTTTGCCGTC 61.432 66.667 0.00 0.00 43.35 4.79
2037 2069 2.770132 CTTTGCCGGAGCCTTTTGCC 62.770 60.000 5.05 0.00 42.71 4.52
2038 2070 1.373371 CTTTGCCGGAGCCTTTTGC 60.373 57.895 5.05 0.00 38.69 3.68
2039 2071 0.673437 TTCTTTGCCGGAGCCTTTTG 59.327 50.000 5.05 0.00 38.69 2.44
2040 2072 0.673985 GTTCTTTGCCGGAGCCTTTT 59.326 50.000 5.05 0.00 38.69 2.27
2041 2073 1.515521 CGTTCTTTGCCGGAGCCTTT 61.516 55.000 5.05 0.00 38.69 3.11
2042 2074 1.966451 CGTTCTTTGCCGGAGCCTT 60.966 57.895 5.05 0.00 38.69 4.35
2043 2075 2.358737 CGTTCTTTGCCGGAGCCT 60.359 61.111 5.05 0.00 38.69 4.58
2044 2076 4.103103 GCGTTCTTTGCCGGAGCC 62.103 66.667 5.05 0.00 38.69 4.70
2045 2077 1.740296 TAGCGTTCTTTGCCGGAGC 60.740 57.895 5.05 0.00 40.48 4.70
2046 2078 1.683790 CGTAGCGTTCTTTGCCGGAG 61.684 60.000 5.05 0.00 0.00 4.63
2047 2079 1.735198 CGTAGCGTTCTTTGCCGGA 60.735 57.895 5.05 0.00 0.00 5.14
2048 2080 2.736682 CCGTAGCGTTCTTTGCCGG 61.737 63.158 0.00 0.00 32.39 6.13
2049 2081 0.733566 TACCGTAGCGTTCTTTGCCG 60.734 55.000 0.00 0.00 0.00 5.69
2050 2082 1.431496 TTACCGTAGCGTTCTTTGCC 58.569 50.000 0.00 0.00 0.00 4.52
2051 2083 2.221517 TGTTTACCGTAGCGTTCTTTGC 59.778 45.455 0.00 0.00 0.00 3.68
2052 2084 4.025480 AGTTGTTTACCGTAGCGTTCTTTG 60.025 41.667 0.00 0.00 0.00 2.77
2053 2085 4.122046 AGTTGTTTACCGTAGCGTTCTTT 58.878 39.130 0.00 0.00 0.00 2.52
2054 2086 3.721035 AGTTGTTTACCGTAGCGTTCTT 58.279 40.909 0.00 0.00 0.00 2.52
2055 2087 3.311966 GAGTTGTTTACCGTAGCGTTCT 58.688 45.455 0.00 0.00 0.00 3.01
2056 2088 2.409715 GGAGTTGTTTACCGTAGCGTTC 59.590 50.000 0.00 0.00 0.00 3.95
2057 2089 2.036346 AGGAGTTGTTTACCGTAGCGTT 59.964 45.455 0.00 0.00 0.00 4.84
2058 2090 1.615392 AGGAGTTGTTTACCGTAGCGT 59.385 47.619 0.00 0.00 0.00 5.07
2059 2091 2.358939 AGGAGTTGTTTACCGTAGCG 57.641 50.000 0.00 0.00 0.00 4.26
2060 2092 3.364664 GCAAAGGAGTTGTTTACCGTAGC 60.365 47.826 0.00 0.00 39.63 3.58
2061 2093 3.187842 GGCAAAGGAGTTGTTTACCGTAG 59.812 47.826 0.00 0.00 39.63 3.51
2062 2094 3.140623 GGCAAAGGAGTTGTTTACCGTA 58.859 45.455 0.00 0.00 39.63 4.02
2063 2095 1.951602 GGCAAAGGAGTTGTTTACCGT 59.048 47.619 0.00 0.00 39.63 4.83
2064 2096 1.069500 CGGCAAAGGAGTTGTTTACCG 60.069 52.381 0.00 0.00 39.63 4.02
2065 2097 1.951602 ACGGCAAAGGAGTTGTTTACC 59.048 47.619 0.00 0.00 39.63 2.85
2066 2098 2.876550 AGACGGCAAAGGAGTTGTTTAC 59.123 45.455 0.00 0.00 39.63 2.01
2067 2099 2.875933 CAGACGGCAAAGGAGTTGTTTA 59.124 45.455 0.00 0.00 39.63 2.01
2068 2100 1.676006 CAGACGGCAAAGGAGTTGTTT 59.324 47.619 0.00 0.00 39.63 2.83
2069 2101 1.308998 CAGACGGCAAAGGAGTTGTT 58.691 50.000 0.00 0.00 39.63 2.83
2070 2102 1.166531 GCAGACGGCAAAGGAGTTGT 61.167 55.000 0.00 0.00 43.97 3.32
2071 2103 1.576421 GCAGACGGCAAAGGAGTTG 59.424 57.895 0.00 0.00 43.97 3.16
2072 2104 4.065110 GCAGACGGCAAAGGAGTT 57.935 55.556 0.00 0.00 43.97 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.