Multiple sequence alignment - TraesCS5D01G219900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G219900 chr5D 100.000 2414 0 0 1 2414 329120584 329122997 0.000000e+00 4458
1 TraesCS5D01G219900 chr5D 97.938 2328 36 9 94 2414 503217647 503215325 0.000000e+00 4023
2 TraesCS5D01G219900 chrUn 98.239 2328 31 9 94 2414 93410202 93412526 0.000000e+00 4063
3 TraesCS5D01G219900 chr2D 98.152 2327 34 8 94 2414 272794464 272796787 0.000000e+00 4050
4 TraesCS5D01G219900 chr6D 97.764 2326 41 9 94 2414 168250967 168248648 0.000000e+00 3997
5 TraesCS5D01G219900 chr3A 97.251 2328 53 10 94 2414 672910578 672912901 0.000000e+00 3934
6 TraesCS5D01G219900 chr6A 96.823 2329 59 12 95 2414 260116852 260119174 0.000000e+00 3877
7 TraesCS5D01G219900 chr7A 94.495 2325 114 12 94 2414 352182384 352184698 0.000000e+00 3572
8 TraesCS5D01G219900 chr2A 96.951 1771 46 6 575 2342 335829842 335828077 0.000000e+00 2964
9 TraesCS5D01G219900 chr2A 96.364 880 16 4 94 972 335838057 335837193 0.000000e+00 1434
10 TraesCS5D01G219900 chr2A 98.473 131 2 0 94 224 713027456 713027586 5.190000e-57 231
11 TraesCS5D01G219900 chr2A 97.015 67 1 1 393 459 703332721 703332656 7.050000e-21 111
12 TraesCS5D01G219900 chr1D 95.711 1702 63 7 701 2400 397109208 397110901 0.000000e+00 2730


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G219900 chr5D 329120584 329122997 2413 False 4458 4458 100.000 1 2414 1 chr5D.!!$F1 2413
1 TraesCS5D01G219900 chr5D 503215325 503217647 2322 True 4023 4023 97.938 94 2414 1 chr5D.!!$R1 2320
2 TraesCS5D01G219900 chrUn 93410202 93412526 2324 False 4063 4063 98.239 94 2414 1 chrUn.!!$F1 2320
3 TraesCS5D01G219900 chr2D 272794464 272796787 2323 False 4050 4050 98.152 94 2414 1 chr2D.!!$F1 2320
4 TraesCS5D01G219900 chr6D 168248648 168250967 2319 True 3997 3997 97.764 94 2414 1 chr6D.!!$R1 2320
5 TraesCS5D01G219900 chr3A 672910578 672912901 2323 False 3934 3934 97.251 94 2414 1 chr3A.!!$F1 2320
6 TraesCS5D01G219900 chr6A 260116852 260119174 2322 False 3877 3877 96.823 95 2414 1 chr6A.!!$F1 2319
7 TraesCS5D01G219900 chr7A 352182384 352184698 2314 False 3572 3572 94.495 94 2414 1 chr7A.!!$F1 2320
8 TraesCS5D01G219900 chr2A 335828077 335829842 1765 True 2964 2964 96.951 575 2342 1 chr2A.!!$R1 1767
9 TraesCS5D01G219900 chr2A 335837193 335838057 864 True 1434 1434 96.364 94 972 1 chr2A.!!$R2 878
10 TraesCS5D01G219900 chr1D 397109208 397110901 1693 False 2730 2730 95.711 701 2400 1 chr1D.!!$F1 1699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.034574 TCGCCATGGGTTGTAGCATT 60.035 50.0 15.13 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 1950 2.421424 CTGCAAGAATGTTAGGCTGTCC 59.579 50.0 0.0 0.0 34.07 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.941812 CCACTTGTCCGACTGTTGC 59.058 57.895 0.00 0.00 0.00 4.17
19 20 0.532862 CCACTTGTCCGACTGTTGCT 60.533 55.000 0.00 0.00 0.00 3.91
20 21 0.861837 CACTTGTCCGACTGTTGCTC 59.138 55.000 0.00 0.00 0.00 4.26
21 22 0.597637 ACTTGTCCGACTGTTGCTCG 60.598 55.000 0.00 0.00 0.00 5.03
22 23 1.891060 CTTGTCCGACTGTTGCTCGC 61.891 60.000 0.00 0.00 0.00 5.03
23 24 3.112709 GTCCGACTGTTGCTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
24 25 3.611674 TCCGACTGTTGCTCGCCA 61.612 61.111 0.00 0.00 0.00 5.69
25 26 2.434884 CCGACTGTTGCTCGCCAT 60.435 61.111 0.00 0.00 0.00 4.40
26 27 2.743752 CCGACTGTTGCTCGCCATG 61.744 63.158 0.00 0.00 0.00 3.66
27 28 2.743752 CGACTGTTGCTCGCCATGG 61.744 63.158 7.63 7.63 0.00 3.66
28 29 2.360350 ACTGTTGCTCGCCATGGG 60.360 61.111 15.13 3.69 0.00 4.00
29 30 2.360350 CTGTTGCTCGCCATGGGT 60.360 61.111 15.13 0.00 0.00 4.51
30 31 1.973281 CTGTTGCTCGCCATGGGTT 60.973 57.895 15.13 0.00 0.00 4.11
31 32 2.203972 CTGTTGCTCGCCATGGGTTG 62.204 60.000 15.13 3.28 0.00 3.77
32 33 2.115052 TTGCTCGCCATGGGTTGT 59.885 55.556 15.13 0.00 0.00 3.32
33 34 0.958382 GTTGCTCGCCATGGGTTGTA 60.958 55.000 15.13 0.00 0.00 2.41
34 35 0.676466 TTGCTCGCCATGGGTTGTAG 60.676 55.000 15.13 0.00 0.00 2.74
35 36 2.472909 GCTCGCCATGGGTTGTAGC 61.473 63.158 15.13 5.04 0.00 3.58
36 37 1.078497 CTCGCCATGGGTTGTAGCA 60.078 57.895 15.13 0.00 0.00 3.49
37 38 0.464373 CTCGCCATGGGTTGTAGCAT 60.464 55.000 15.13 0.00 0.00 3.79
38 39 0.034574 TCGCCATGGGTTGTAGCATT 60.035 50.000 15.13 0.00 0.00 3.56
39 40 0.101040 CGCCATGGGTTGTAGCATTG 59.899 55.000 15.13 0.00 0.00 2.82
40 41 0.461135 GCCATGGGTTGTAGCATTGG 59.539 55.000 15.13 0.00 0.00 3.16
41 42 1.113788 CCATGGGTTGTAGCATTGGG 58.886 55.000 2.85 0.00 0.00 4.12
42 43 1.619432 CCATGGGTTGTAGCATTGGGT 60.619 52.381 2.85 0.00 0.00 4.51
43 44 1.750778 CATGGGTTGTAGCATTGGGTC 59.249 52.381 0.00 0.00 0.00 4.46
44 45 0.322098 TGGGTTGTAGCATTGGGTCG 60.322 55.000 0.00 0.00 0.00 4.79
45 46 0.035820 GGGTTGTAGCATTGGGTCGA 60.036 55.000 0.00 0.00 0.00 4.20
46 47 1.612199 GGGTTGTAGCATTGGGTCGAA 60.612 52.381 0.00 0.00 0.00 3.71
47 48 1.467342 GGTTGTAGCATTGGGTCGAAC 59.533 52.381 0.00 0.00 0.00 3.95
48 49 2.423577 GTTGTAGCATTGGGTCGAACT 58.576 47.619 0.00 0.00 0.00 3.01
49 50 3.592059 GTTGTAGCATTGGGTCGAACTA 58.408 45.455 0.00 0.00 0.00 2.24
50 51 4.189231 GTTGTAGCATTGGGTCGAACTAT 58.811 43.478 0.00 0.00 0.00 2.12
51 52 4.481368 TGTAGCATTGGGTCGAACTATT 57.519 40.909 0.00 0.00 0.00 1.73
52 53 4.839121 TGTAGCATTGGGTCGAACTATTT 58.161 39.130 0.00 0.00 0.00 1.40
53 54 4.634004 TGTAGCATTGGGTCGAACTATTTG 59.366 41.667 0.00 0.00 0.00 2.32
54 55 3.950397 AGCATTGGGTCGAACTATTTGA 58.050 40.909 0.00 0.00 0.00 2.69
55 56 4.331968 AGCATTGGGTCGAACTATTTGAA 58.668 39.130 0.00 0.00 0.00 2.69
56 57 4.396166 AGCATTGGGTCGAACTATTTGAAG 59.604 41.667 0.00 0.00 0.00 3.02
57 58 4.438744 GCATTGGGTCGAACTATTTGAAGG 60.439 45.833 0.00 0.00 0.00 3.46
58 59 4.627284 TTGGGTCGAACTATTTGAAGGA 57.373 40.909 0.00 0.00 0.00 3.36
59 60 4.202245 TGGGTCGAACTATTTGAAGGAG 57.798 45.455 0.00 0.00 0.00 3.69
60 61 3.055385 TGGGTCGAACTATTTGAAGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
61 62 3.197116 GGGTCGAACTATTTGAAGGAGGA 59.803 47.826 0.00 0.00 0.00 3.71
62 63 4.434520 GGTCGAACTATTTGAAGGAGGAG 58.565 47.826 0.00 0.00 0.00 3.69
63 64 4.434520 GTCGAACTATTTGAAGGAGGAGG 58.565 47.826 0.00 0.00 0.00 4.30
64 65 3.118738 TCGAACTATTTGAAGGAGGAGGC 60.119 47.826 0.00 0.00 0.00 4.70
65 66 3.546724 GAACTATTTGAAGGAGGAGGCC 58.453 50.000 0.00 0.00 0.00 5.19
66 67 2.852130 ACTATTTGAAGGAGGAGGCCT 58.148 47.619 3.86 3.86 40.93 5.19
75 76 3.653835 AGGAGGAGGCCTTTGATTTAC 57.346 47.619 6.77 0.00 33.46 2.01
76 77 2.242452 AGGAGGAGGCCTTTGATTTACC 59.758 50.000 6.77 0.00 33.46 2.85
77 78 2.656002 GAGGAGGCCTTTGATTTACCC 58.344 52.381 6.77 0.00 31.76 3.69
78 79 2.242452 GAGGAGGCCTTTGATTTACCCT 59.758 50.000 6.77 4.86 31.76 4.34
79 80 3.458487 GAGGAGGCCTTTGATTTACCCTA 59.542 47.826 6.77 0.00 31.76 3.53
80 81 4.055094 AGGAGGCCTTTGATTTACCCTAT 58.945 43.478 6.77 0.00 0.00 2.57
81 82 5.232347 AGGAGGCCTTTGATTTACCCTATA 58.768 41.667 6.77 0.00 0.00 1.31
82 83 5.674958 AGGAGGCCTTTGATTTACCCTATAA 59.325 40.000 6.77 0.00 0.00 0.98
83 84 6.004574 GGAGGCCTTTGATTTACCCTATAAG 58.995 44.000 6.77 0.00 0.00 1.73
84 85 6.183361 GGAGGCCTTTGATTTACCCTATAAGA 60.183 42.308 6.77 0.00 0.00 2.10
85 86 6.842676 AGGCCTTTGATTTACCCTATAAGAG 58.157 40.000 0.00 0.00 0.00 2.85
86 87 6.619852 AGGCCTTTGATTTACCCTATAAGAGA 59.380 38.462 0.00 0.00 0.00 3.10
87 88 6.937465 GGCCTTTGATTTACCCTATAAGAGAG 59.063 42.308 0.00 0.00 0.00 3.20
88 89 7.420330 GGCCTTTGATTTACCCTATAAGAGAGT 60.420 40.741 0.00 0.00 0.00 3.24
89 90 7.993758 GCCTTTGATTTACCCTATAAGAGAGTT 59.006 37.037 0.00 0.00 0.00 3.01
212 213 1.204704 AGGTAAACGCCCCGTAGTAAC 59.795 52.381 0.00 0.00 39.99 2.50
600 603 9.692749 TTACTTCGATCAAGATATTGGACATAC 57.307 33.333 0.00 0.00 35.82 2.39
647 651 5.407407 AAAGGAGTAATCGACTGTGACAT 57.593 39.130 0.00 0.00 39.06 3.06
747 752 2.786512 TAGTAACGTGGTCCCGGGCT 62.787 60.000 18.49 6.12 0.00 5.19
1156 1161 5.136828 TCCCTATGTCTGTTTTCAAAGCAA 58.863 37.500 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.532862 AGCAACAGTCGGACAAGTGG 60.533 55.000 11.27 7.28 0.00 4.00
1 2 0.861837 GAGCAACAGTCGGACAAGTG 59.138 55.000 11.27 5.83 0.00 3.16
2 3 0.597637 CGAGCAACAGTCGGACAAGT 60.598 55.000 11.27 5.69 33.66 3.16
3 4 1.891060 GCGAGCAACAGTCGGACAAG 61.891 60.000 11.27 5.03 37.91 3.16
4 5 1.954146 GCGAGCAACAGTCGGACAA 60.954 57.895 11.27 0.00 37.91 3.18
5 6 2.355837 GCGAGCAACAGTCGGACA 60.356 61.111 11.27 0.00 37.91 4.02
6 7 3.112709 GGCGAGCAACAGTCGGAC 61.113 66.667 0.00 0.00 37.91 4.79
7 8 2.942796 ATGGCGAGCAACAGTCGGA 61.943 57.895 0.00 0.00 37.91 4.55
8 9 2.434884 ATGGCGAGCAACAGTCGG 60.435 61.111 0.00 0.00 37.91 4.79
9 10 2.743752 CCATGGCGAGCAACAGTCG 61.744 63.158 0.00 0.00 40.50 4.18
10 11 2.401766 CCCATGGCGAGCAACAGTC 61.402 63.158 6.09 0.00 0.00 3.51
11 12 2.360350 CCCATGGCGAGCAACAGT 60.360 61.111 6.09 0.00 0.00 3.55
12 13 1.973281 AACCCATGGCGAGCAACAG 60.973 57.895 6.09 0.00 0.00 3.16
13 14 2.115052 AACCCATGGCGAGCAACA 59.885 55.556 6.09 0.00 0.00 3.33
14 15 0.958382 TACAACCCATGGCGAGCAAC 60.958 55.000 6.09 0.00 0.00 4.17
15 16 0.676466 CTACAACCCATGGCGAGCAA 60.676 55.000 6.09 0.00 0.00 3.91
16 17 1.078497 CTACAACCCATGGCGAGCA 60.078 57.895 6.09 0.00 0.00 4.26
17 18 2.472909 GCTACAACCCATGGCGAGC 61.473 63.158 6.09 6.04 0.00 5.03
18 19 0.464373 ATGCTACAACCCATGGCGAG 60.464 55.000 6.09 0.00 0.00 5.03
19 20 0.034574 AATGCTACAACCCATGGCGA 60.035 50.000 6.09 0.00 0.00 5.54
20 21 0.101040 CAATGCTACAACCCATGGCG 59.899 55.000 6.09 2.02 0.00 5.69
21 22 0.461135 CCAATGCTACAACCCATGGC 59.539 55.000 6.09 0.00 0.00 4.40
22 23 1.113788 CCCAATGCTACAACCCATGG 58.886 55.000 4.14 4.14 0.00 3.66
23 24 1.750778 GACCCAATGCTACAACCCATG 59.249 52.381 0.00 0.00 0.00 3.66
24 25 1.681780 CGACCCAATGCTACAACCCAT 60.682 52.381 0.00 0.00 0.00 4.00
25 26 0.322098 CGACCCAATGCTACAACCCA 60.322 55.000 0.00 0.00 0.00 4.51
26 27 0.035820 TCGACCCAATGCTACAACCC 60.036 55.000 0.00 0.00 0.00 4.11
27 28 1.467342 GTTCGACCCAATGCTACAACC 59.533 52.381 0.00 0.00 0.00 3.77
28 29 2.423577 AGTTCGACCCAATGCTACAAC 58.576 47.619 0.00 0.00 0.00 3.32
29 30 2.851263 AGTTCGACCCAATGCTACAA 57.149 45.000 0.00 0.00 0.00 2.41
30 31 4.481368 AATAGTTCGACCCAATGCTACA 57.519 40.909 0.00 0.00 0.00 2.74
31 32 4.873827 TCAAATAGTTCGACCCAATGCTAC 59.126 41.667 0.00 0.00 0.00 3.58
32 33 5.092554 TCAAATAGTTCGACCCAATGCTA 57.907 39.130 0.00 0.00 0.00 3.49
33 34 3.950397 TCAAATAGTTCGACCCAATGCT 58.050 40.909 0.00 0.00 0.00 3.79
34 35 4.438744 CCTTCAAATAGTTCGACCCAATGC 60.439 45.833 0.00 0.00 0.00 3.56
35 36 4.941263 TCCTTCAAATAGTTCGACCCAATG 59.059 41.667 0.00 0.00 0.00 2.82
36 37 5.174037 TCCTTCAAATAGTTCGACCCAAT 57.826 39.130 0.00 0.00 0.00 3.16
37 38 4.564821 CCTCCTTCAAATAGTTCGACCCAA 60.565 45.833 0.00 0.00 0.00 4.12
38 39 3.055385 CCTCCTTCAAATAGTTCGACCCA 60.055 47.826 0.00 0.00 0.00 4.51
39 40 3.197116 TCCTCCTTCAAATAGTTCGACCC 59.803 47.826 0.00 0.00 0.00 4.46
40 41 4.434520 CTCCTCCTTCAAATAGTTCGACC 58.565 47.826 0.00 0.00 0.00 4.79
41 42 4.434520 CCTCCTCCTTCAAATAGTTCGAC 58.565 47.826 0.00 0.00 0.00 4.20
42 43 3.118738 GCCTCCTCCTTCAAATAGTTCGA 60.119 47.826 0.00 0.00 0.00 3.71
43 44 3.198872 GCCTCCTCCTTCAAATAGTTCG 58.801 50.000 0.00 0.00 0.00 3.95
44 45 3.201045 AGGCCTCCTCCTTCAAATAGTTC 59.799 47.826 0.00 0.00 30.82 3.01
45 46 3.193782 AGGCCTCCTCCTTCAAATAGTT 58.806 45.455 0.00 0.00 30.82 2.24
46 47 2.852130 AGGCCTCCTCCTTCAAATAGT 58.148 47.619 0.00 0.00 30.82 2.12
47 48 3.941704 AAGGCCTCCTCCTTCAAATAG 57.058 47.619 5.23 0.00 42.55 1.73
48 49 3.591527 TCAAAGGCCTCCTCCTTCAAATA 59.408 43.478 5.23 0.00 45.25 1.40
49 50 2.379907 TCAAAGGCCTCCTCCTTCAAAT 59.620 45.455 5.23 0.00 45.25 2.32
50 51 1.780309 TCAAAGGCCTCCTCCTTCAAA 59.220 47.619 5.23 0.00 45.25 2.69
51 52 1.444933 TCAAAGGCCTCCTCCTTCAA 58.555 50.000 5.23 0.00 45.25 2.69
52 53 1.673767 ATCAAAGGCCTCCTCCTTCA 58.326 50.000 5.23 0.00 45.25 3.02
53 54 2.816777 AATCAAAGGCCTCCTCCTTC 57.183 50.000 5.23 0.00 45.25 3.46
55 56 2.242452 GGTAAATCAAAGGCCTCCTCCT 59.758 50.000 5.23 0.00 38.31 3.69
56 57 2.656002 GGTAAATCAAAGGCCTCCTCC 58.344 52.381 5.23 0.00 30.89 4.30
57 58 2.242452 AGGGTAAATCAAAGGCCTCCTC 59.758 50.000 5.23 0.00 30.89 3.71
58 59 2.288525 AGGGTAAATCAAAGGCCTCCT 58.711 47.619 5.23 0.85 33.87 3.69
59 60 2.828661 AGGGTAAATCAAAGGCCTCC 57.171 50.000 5.23 0.00 0.00 4.30
60 61 6.838382 TCTTATAGGGTAAATCAAAGGCCTC 58.162 40.000 5.23 0.00 0.00 4.70
61 62 6.619852 TCTCTTATAGGGTAAATCAAAGGCCT 59.380 38.462 0.00 0.00 0.00 5.19
62 63 6.838382 TCTCTTATAGGGTAAATCAAAGGCC 58.162 40.000 0.00 0.00 0.00 5.19
63 64 7.510407 ACTCTCTTATAGGGTAAATCAAAGGC 58.490 38.462 0.00 0.00 37.05 4.35
68 69 9.322769 GGGATAACTCTCTTATAGGGTAAATCA 57.677 37.037 0.00 0.00 38.26 2.57
69 70 8.468399 CGGGATAACTCTCTTATAGGGTAAATC 58.532 40.741 0.00 0.00 38.26 2.17
70 71 7.954620 ACGGGATAACTCTCTTATAGGGTAAAT 59.045 37.037 0.00 0.00 38.26 1.40
71 72 7.300658 ACGGGATAACTCTCTTATAGGGTAAA 58.699 38.462 0.00 0.00 38.26 2.01
72 73 6.856757 ACGGGATAACTCTCTTATAGGGTAA 58.143 40.000 0.00 0.00 38.26 2.85
73 74 6.460103 ACGGGATAACTCTCTTATAGGGTA 57.540 41.667 0.00 0.00 38.26 3.69
74 75 5.336491 ACGGGATAACTCTCTTATAGGGT 57.664 43.478 0.00 0.00 42.40 4.34
75 76 6.667558 AAACGGGATAACTCTCTTATAGGG 57.332 41.667 0.00 0.00 0.00 3.53
76 77 8.406730 ACTAAACGGGATAACTCTCTTATAGG 57.593 38.462 0.00 0.00 0.00 2.57
79 80 9.022884 GGATACTAAACGGGATAACTCTCTTAT 57.977 37.037 0.00 0.00 0.00 1.73
80 81 7.449704 GGGATACTAAACGGGATAACTCTCTTA 59.550 40.741 0.00 0.00 0.00 2.10
81 82 6.267242 GGGATACTAAACGGGATAACTCTCTT 59.733 42.308 0.00 0.00 0.00 2.85
82 83 5.774184 GGGATACTAAACGGGATAACTCTCT 59.226 44.000 0.00 0.00 0.00 3.10
83 84 5.537674 TGGGATACTAAACGGGATAACTCTC 59.462 44.000 0.00 0.00 0.00 3.20
84 85 5.461327 TGGGATACTAAACGGGATAACTCT 58.539 41.667 0.00 0.00 0.00 3.24
85 86 5.796424 TGGGATACTAAACGGGATAACTC 57.204 43.478 0.00 0.00 0.00 3.01
86 87 6.564557 TTTGGGATACTAAACGGGATAACT 57.435 37.500 0.00 0.00 42.67 2.24
301 302 1.277842 TCTTCCAAGCGCAGGATAACA 59.722 47.619 20.31 6.64 34.56 2.41
600 603 7.784633 TTTTCCTTTTTAAAGAGTGGCATTG 57.215 32.000 5.15 0.00 38.28 2.82
627 631 4.017126 TCATGTCACAGTCGATTACTCCT 58.983 43.478 0.00 0.00 35.76 3.69
747 752 4.227300 ACCATTGTGGGTAGAATGCTAGAA 59.773 41.667 0.00 0.00 43.37 2.10
834 839 0.322997 CCCCCAATTTGCGACCTACA 60.323 55.000 0.00 0.00 0.00 2.74
1156 1161 4.150804 GCGAATCTCGTCAAGAACTCTTTT 59.849 41.667 0.00 0.00 42.81 2.27
1722 1741 2.772287 GGAACTTGAACCTGAGTCCAG 58.228 52.381 0.00 0.00 40.09 3.86
1929 1950 2.421424 CTGCAAGAATGTTAGGCTGTCC 59.579 50.000 0.00 0.00 34.07 4.02
2176 2198 9.801873 CCAAATTTTTACACCTAATACTCCATG 57.198 33.333 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.