Multiple sequence alignment - TraesCS5D01G219800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G219800 chr5D 100.000 2216 0 0 1 2216 329120290 329122505 0.000000e+00 4093
1 TraesCS5D01G219800 chr5D 98.254 1833 26 5 388 2216 503217647 503215817 0.000000e+00 3203
2 TraesCS5D01G219800 chr5D 97.458 118 2 1 1 117 32874068 32874185 1.340000e-47 200
3 TraesCS5D01G219800 chr5D 97.414 116 3 0 1 116 252254052 252254167 4.830000e-47 198
4 TraesCS5D01G219800 chrUn 98.528 1834 20 6 388 2216 93410202 93412033 0.000000e+00 3230
5 TraesCS5D01G219800 chr2D 98.363 1833 25 4 388 2216 272794464 272796295 0.000000e+00 3214
6 TraesCS5D01G219800 chr6D 97.874 1834 30 7 388 2216 168250967 168249138 0.000000e+00 3162
7 TraesCS5D01G219800 chr3B 97.403 1848 27 6 388 2216 201526453 201524608 0.000000e+00 3127
8 TraesCS5D01G219800 chr3A 97.384 1835 39 8 388 2216 672910578 672912409 0.000000e+00 3114
9 TraesCS5D01G219800 chr3A 94.805 154 7 1 2042 2194 179810584 179810737 2.840000e-59 239
10 TraesCS5D01G219800 chr6A 96.950 1836 45 8 389 2216 260116852 260118684 0.000000e+00 3070
11 TraesCS5D01G219800 chr7A 94.863 1830 85 7 388 2216 352182384 352184205 0.000000e+00 2850
12 TraesCS5D01G219800 chr7A 96.000 75 3 0 2142 2216 208122944 208122870 2.990000e-24 122
13 TraesCS5D01G219800 chr2A 97.039 1351 33 5 869 2216 335829842 335828496 0.000000e+00 2266
14 TraesCS5D01G219800 chr2A 96.364 880 16 4 388 1266 335838057 335837193 0.000000e+00 1434
15 TraesCS5D01G219800 chr2A 97.414 116 3 0 1 116 172973829 172973714 4.830000e-47 198
16 TraesCS5D01G219800 chr4D 97.436 117 3 0 1 117 254770758 254770642 1.340000e-47 200
17 TraesCS5D01G219800 chr4D 97.414 116 3 0 1 116 185399306 185399191 4.830000e-47 198
18 TraesCS5D01G219800 chr4D 97.414 116 3 0 1 116 254762486 254762371 4.830000e-47 198
19 TraesCS5D01G219800 chr7D 97.414 116 3 0 1 116 198600049 198600164 4.830000e-47 198
20 TraesCS5D01G219800 chr3D 97.414 116 3 0 1 116 18056117 18056232 4.830000e-47 198
21 TraesCS5D01G219800 chr1D 97.414 116 3 0 1 116 313646149 313646034 4.830000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G219800 chr5D 329120290 329122505 2215 False 4093 4093 100.000 1 2216 1 chr5D.!!$F3 2215
1 TraesCS5D01G219800 chr5D 503215817 503217647 1830 True 3203 3203 98.254 388 2216 1 chr5D.!!$R1 1828
2 TraesCS5D01G219800 chrUn 93410202 93412033 1831 False 3230 3230 98.528 388 2216 1 chrUn.!!$F1 1828
3 TraesCS5D01G219800 chr2D 272794464 272796295 1831 False 3214 3214 98.363 388 2216 1 chr2D.!!$F1 1828
4 TraesCS5D01G219800 chr6D 168249138 168250967 1829 True 3162 3162 97.874 388 2216 1 chr6D.!!$R1 1828
5 TraesCS5D01G219800 chr3B 201524608 201526453 1845 True 3127 3127 97.403 388 2216 1 chr3B.!!$R1 1828
6 TraesCS5D01G219800 chr3A 672910578 672912409 1831 False 3114 3114 97.384 388 2216 1 chr3A.!!$F2 1828
7 TraesCS5D01G219800 chr6A 260116852 260118684 1832 False 3070 3070 96.950 389 2216 1 chr6A.!!$F1 1827
8 TraesCS5D01G219800 chr7A 352182384 352184205 1821 False 2850 2850 94.863 388 2216 1 chr7A.!!$F1 1828
9 TraesCS5D01G219800 chr2A 335828496 335829842 1346 True 2266 2266 97.039 869 2216 1 chr2A.!!$R2 1347
10 TraesCS5D01G219800 chr2A 335837193 335838057 864 True 1434 1434 96.364 388 1266 1 chr2A.!!$R3 878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.034574 TCGCCATGGGTTGTAGCATT 60.035 50.0 15.13 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 2046 2.772287 GGAACTTGAACCTGAGTCCAG 58.228 52.381 0.0 0.0 40.09 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.928661 AGTGCTGAAATTGTAAGTAGCG 57.071 40.909 0.00 0.00 34.07 4.26
23 24 4.566004 AGTGCTGAAATTGTAAGTAGCGA 58.434 39.130 0.00 0.00 34.07 4.93
24 25 4.627467 AGTGCTGAAATTGTAAGTAGCGAG 59.373 41.667 0.00 0.00 34.07 5.03
25 26 4.389077 GTGCTGAAATTGTAAGTAGCGAGT 59.611 41.667 0.00 0.00 34.07 4.18
26 27 5.575606 GTGCTGAAATTGTAAGTAGCGAGTA 59.424 40.000 0.00 0.00 34.07 2.59
27 28 5.805486 TGCTGAAATTGTAAGTAGCGAGTAG 59.195 40.000 0.00 0.00 34.07 2.57
28 29 5.805994 GCTGAAATTGTAAGTAGCGAGTAGT 59.194 40.000 0.00 0.00 0.00 2.73
29 30 6.310711 GCTGAAATTGTAAGTAGCGAGTAGTT 59.689 38.462 0.00 0.00 0.00 2.24
30 31 7.148623 GCTGAAATTGTAAGTAGCGAGTAGTTT 60.149 37.037 0.00 0.00 0.00 2.66
31 32 8.014322 TGAAATTGTAAGTAGCGAGTAGTTTG 57.986 34.615 0.00 0.00 0.00 2.93
32 33 7.868922 TGAAATTGTAAGTAGCGAGTAGTTTGA 59.131 33.333 0.00 0.00 0.00 2.69
33 34 8.773404 AAATTGTAAGTAGCGAGTAGTTTGAT 57.227 30.769 0.00 0.00 0.00 2.57
34 35 9.865321 AAATTGTAAGTAGCGAGTAGTTTGATA 57.135 29.630 0.00 0.00 0.00 2.15
35 36 9.517609 AATTGTAAGTAGCGAGTAGTTTGATAG 57.482 33.333 0.00 0.00 0.00 2.08
36 37 6.493116 TGTAAGTAGCGAGTAGTTTGATAGC 58.507 40.000 0.00 0.00 0.00 2.97
37 38 5.578005 AAGTAGCGAGTAGTTTGATAGCA 57.422 39.130 0.00 0.00 0.00 3.49
38 39 5.578005 AGTAGCGAGTAGTTTGATAGCAA 57.422 39.130 0.00 0.00 0.00 3.91
39 40 5.583495 AGTAGCGAGTAGTTTGATAGCAAG 58.417 41.667 0.00 0.00 35.04 4.01
40 41 4.720649 AGCGAGTAGTTTGATAGCAAGA 57.279 40.909 0.00 0.00 35.04 3.02
41 42 5.269505 AGCGAGTAGTTTGATAGCAAGAT 57.730 39.130 0.00 0.00 35.04 2.40
42 43 6.392625 AGCGAGTAGTTTGATAGCAAGATA 57.607 37.500 0.00 0.00 35.04 1.98
43 44 6.806751 AGCGAGTAGTTTGATAGCAAGATAA 58.193 36.000 0.00 0.00 35.04 1.75
44 45 7.437748 AGCGAGTAGTTTGATAGCAAGATAAT 58.562 34.615 0.00 0.00 35.04 1.28
45 46 7.928706 AGCGAGTAGTTTGATAGCAAGATAATT 59.071 33.333 0.00 0.00 35.04 1.40
46 47 8.552034 GCGAGTAGTTTGATAGCAAGATAATTT 58.448 33.333 0.00 0.00 35.04 1.82
47 48 9.855361 CGAGTAGTTTGATAGCAAGATAATTTG 57.145 33.333 0.00 0.00 35.04 2.32
52 53 9.988350 AGTTTGATAGCAAGATAATTTGTAACG 57.012 29.630 0.00 0.00 35.04 3.18
53 54 9.982291 GTTTGATAGCAAGATAATTTGTAACGA 57.018 29.630 0.00 0.00 35.04 3.85
55 56 7.851508 TGATAGCAAGATAATTTGTAACGAGC 58.148 34.615 0.00 0.00 0.00 5.03
56 57 7.494298 TGATAGCAAGATAATTTGTAACGAGCA 59.506 33.333 0.00 0.00 0.00 4.26
57 58 6.494893 AGCAAGATAATTTGTAACGAGCAA 57.505 33.333 0.00 0.00 0.00 3.91
58 59 6.546395 AGCAAGATAATTTGTAACGAGCAAG 58.454 36.000 0.00 0.00 0.00 4.01
59 60 6.149474 AGCAAGATAATTTGTAACGAGCAAGT 59.851 34.615 0.00 0.00 0.00 3.16
60 61 7.333423 AGCAAGATAATTTGTAACGAGCAAGTA 59.667 33.333 0.00 0.00 0.00 2.24
61 62 7.960738 GCAAGATAATTTGTAACGAGCAAGTAA 59.039 33.333 0.00 0.00 0.00 2.24
62 63 9.262472 CAAGATAATTTGTAACGAGCAAGTAAC 57.738 33.333 0.00 0.00 0.00 2.50
63 64 7.672738 AGATAATTTGTAACGAGCAAGTAACG 58.327 34.615 0.00 0.00 0.00 3.18
64 65 5.910637 AATTTGTAACGAGCAAGTAACGA 57.089 34.783 0.00 0.00 0.00 3.85
65 66 6.476243 AATTTGTAACGAGCAAGTAACGAT 57.524 33.333 0.00 0.00 0.00 3.73
66 67 7.585286 AATTTGTAACGAGCAAGTAACGATA 57.415 32.000 0.00 0.00 0.00 2.92
67 68 7.585286 ATTTGTAACGAGCAAGTAACGATAA 57.415 32.000 0.00 0.00 0.00 1.75
68 69 7.585286 TTTGTAACGAGCAAGTAACGATAAT 57.415 32.000 0.00 0.00 0.00 1.28
69 70 8.686397 TTTGTAACGAGCAAGTAACGATAATA 57.314 30.769 0.00 0.00 0.00 0.98
70 71 7.903452 TGTAACGAGCAAGTAACGATAATAG 57.097 36.000 0.00 0.00 0.00 1.73
71 72 7.475015 TGTAACGAGCAAGTAACGATAATAGT 58.525 34.615 0.00 0.00 0.00 2.12
72 73 8.611757 TGTAACGAGCAAGTAACGATAATAGTA 58.388 33.333 0.00 0.00 0.00 1.82
73 74 9.438291 GTAACGAGCAAGTAACGATAATAGTAA 57.562 33.333 0.00 0.00 0.00 2.24
74 75 7.905031 ACGAGCAAGTAACGATAATAGTAAC 57.095 36.000 0.00 0.00 0.00 2.50
75 76 7.475015 ACGAGCAAGTAACGATAATAGTAACA 58.525 34.615 0.00 0.00 0.00 2.41
76 77 7.970061 ACGAGCAAGTAACGATAATAGTAACAA 59.030 33.333 0.00 0.00 0.00 2.83
77 78 8.469902 CGAGCAAGTAACGATAATAGTAACAAG 58.530 37.037 0.00 0.00 0.00 3.16
78 79 9.298774 GAGCAAGTAACGATAATAGTAACAAGT 57.701 33.333 0.00 0.00 0.00 3.16
86 87 9.758651 AACGATAATAGTAACAAGTATGCATCA 57.241 29.630 0.19 0.00 0.00 3.07
87 88 9.758651 ACGATAATAGTAACAAGTATGCATCAA 57.241 29.630 0.19 0.00 0.00 2.57
94 95 8.438676 AGTAACAAGTATGCATCAAGTTATCC 57.561 34.615 0.19 0.00 0.00 2.59
95 96 6.699575 AACAAGTATGCATCAAGTTATCCC 57.300 37.500 0.19 0.00 0.00 3.85
96 97 5.754782 ACAAGTATGCATCAAGTTATCCCA 58.245 37.500 0.19 0.00 0.00 4.37
97 98 6.186957 ACAAGTATGCATCAAGTTATCCCAA 58.813 36.000 0.19 0.00 0.00 4.12
98 99 6.835488 ACAAGTATGCATCAAGTTATCCCAAT 59.165 34.615 0.19 0.00 0.00 3.16
99 100 7.013655 ACAAGTATGCATCAAGTTATCCCAATC 59.986 37.037 0.19 0.00 0.00 2.67
100 101 6.006449 AGTATGCATCAAGTTATCCCAATCC 58.994 40.000 0.19 0.00 0.00 3.01
101 102 4.524802 TGCATCAAGTTATCCCAATCCT 57.475 40.909 0.00 0.00 0.00 3.24
102 103 4.870636 TGCATCAAGTTATCCCAATCCTT 58.129 39.130 0.00 0.00 0.00 3.36
103 104 5.271598 TGCATCAAGTTATCCCAATCCTTT 58.728 37.500 0.00 0.00 0.00 3.11
104 105 5.721000 TGCATCAAGTTATCCCAATCCTTTT 59.279 36.000 0.00 0.00 0.00 2.27
105 106 6.044682 GCATCAAGTTATCCCAATCCTTTTG 58.955 40.000 0.00 0.00 0.00 2.44
106 107 6.127366 GCATCAAGTTATCCCAATCCTTTTGA 60.127 38.462 0.00 0.00 0.00 2.69
107 108 7.486647 CATCAAGTTATCCCAATCCTTTTGAG 58.513 38.462 0.00 0.00 0.00 3.02
108 109 5.951747 TCAAGTTATCCCAATCCTTTTGAGG 59.048 40.000 0.00 0.00 0.00 3.86
109 110 4.281657 AGTTATCCCAATCCTTTTGAGGC 58.718 43.478 0.00 0.00 0.00 4.70
110 111 2.925966 ATCCCAATCCTTTTGAGGCA 57.074 45.000 0.00 0.00 0.00 4.75
111 112 2.692709 TCCCAATCCTTTTGAGGCAA 57.307 45.000 0.00 0.00 0.00 4.52
112 113 2.969628 TCCCAATCCTTTTGAGGCAAA 58.030 42.857 0.00 0.00 0.00 3.68
113 114 2.899256 TCCCAATCCTTTTGAGGCAAAG 59.101 45.455 0.00 0.00 34.72 2.77
114 115 2.027837 CCCAATCCTTTTGAGGCAAAGG 60.028 50.000 8.20 8.20 34.72 3.11
115 116 2.899256 CCAATCCTTTTGAGGCAAAGGA 59.101 45.455 16.98 16.98 36.20 3.36
116 117 3.516700 CCAATCCTTTTGAGGCAAAGGAT 59.483 43.478 19.35 19.35 40.01 3.24
117 118 4.382362 CCAATCCTTTTGAGGCAAAGGATC 60.382 45.833 23.12 0.00 38.78 3.36
118 119 3.814504 TCCTTTTGAGGCAAAGGATCT 57.185 42.857 12.17 0.00 34.72 2.75
119 120 3.690460 TCCTTTTGAGGCAAAGGATCTC 58.310 45.455 12.17 0.00 34.72 2.75
120 121 3.074390 TCCTTTTGAGGCAAAGGATCTCA 59.926 43.478 12.17 0.00 34.72 3.27
121 122 3.192212 CCTTTTGAGGCAAAGGATCTCAC 59.808 47.826 8.73 0.00 37.28 3.51
122 123 2.496899 TTGAGGCAAAGGATCTCACC 57.503 50.000 0.00 0.00 37.28 4.02
123 124 1.661463 TGAGGCAAAGGATCTCACCT 58.339 50.000 0.00 0.00 42.69 4.00
124 125 1.280133 TGAGGCAAAGGATCTCACCTG 59.720 52.381 0.00 0.00 40.49 4.00
125 126 1.556911 GAGGCAAAGGATCTCACCTGA 59.443 52.381 0.00 0.00 40.49 3.86
126 127 1.988107 AGGCAAAGGATCTCACCTGAA 59.012 47.619 0.00 0.00 40.49 3.02
127 128 2.026449 AGGCAAAGGATCTCACCTGAAG 60.026 50.000 0.00 0.00 40.49 3.02
128 129 2.026822 GGCAAAGGATCTCACCTGAAGA 60.027 50.000 0.00 0.00 40.49 2.87
129 130 3.560025 GGCAAAGGATCTCACCTGAAGAA 60.560 47.826 0.00 0.00 40.49 2.52
130 131 4.268359 GCAAAGGATCTCACCTGAAGAAT 58.732 43.478 0.00 0.00 40.49 2.40
131 132 4.096081 GCAAAGGATCTCACCTGAAGAATG 59.904 45.833 0.00 0.00 40.49 2.67
132 133 5.494724 CAAAGGATCTCACCTGAAGAATGA 58.505 41.667 0.00 0.00 40.49 2.57
133 134 5.356291 AAGGATCTCACCTGAAGAATGAG 57.644 43.478 0.00 0.00 40.49 2.90
134 135 3.134442 AGGATCTCACCTGAAGAATGAGC 59.866 47.826 0.00 0.00 39.80 4.26
135 136 3.465871 GATCTCACCTGAAGAATGAGCC 58.534 50.000 6.66 0.48 39.80 4.70
136 137 1.205655 TCTCACCTGAAGAATGAGCCG 59.794 52.381 6.66 0.00 39.80 5.52
137 138 0.250234 TCACCTGAAGAATGAGCCGG 59.750 55.000 0.00 0.00 0.00 6.13
138 139 1.078143 ACCTGAAGAATGAGCCGGC 60.078 57.895 21.89 21.89 0.00 6.13
139 140 2.176273 CCTGAAGAATGAGCCGGCG 61.176 63.158 23.20 0.00 0.00 6.46
140 141 1.153568 CTGAAGAATGAGCCGGCGA 60.154 57.895 23.20 12.86 0.00 5.54
141 142 1.424493 CTGAAGAATGAGCCGGCGAC 61.424 60.000 23.20 19.75 0.00 5.19
142 143 1.153549 GAAGAATGAGCCGGCGACT 60.154 57.895 23.20 13.92 0.00 4.18
143 144 0.102481 GAAGAATGAGCCGGCGACTA 59.898 55.000 23.20 9.23 0.00 2.59
144 145 0.179108 AAGAATGAGCCGGCGACTAC 60.179 55.000 23.20 14.02 0.00 2.73
145 146 1.141019 GAATGAGCCGGCGACTACA 59.859 57.895 23.20 17.12 0.00 2.74
146 147 0.249489 GAATGAGCCGGCGACTACAT 60.249 55.000 23.20 18.54 0.00 2.29
147 148 0.249489 AATGAGCCGGCGACTACATC 60.249 55.000 23.20 12.00 0.00 3.06
148 149 1.109920 ATGAGCCGGCGACTACATCT 61.110 55.000 23.20 0.00 0.00 2.90
149 150 1.299468 GAGCCGGCGACTACATCTG 60.299 63.158 23.20 0.00 0.00 2.90
150 151 2.005960 GAGCCGGCGACTACATCTGT 62.006 60.000 23.20 0.00 0.00 3.41
151 152 0.750546 AGCCGGCGACTACATCTGTA 60.751 55.000 23.20 0.00 0.00 2.74
152 153 0.314302 GCCGGCGACTACATCTGTAT 59.686 55.000 12.58 0.00 0.00 2.29
153 154 1.666311 GCCGGCGACTACATCTGTATC 60.666 57.143 12.58 0.00 0.00 2.24
154 155 1.068472 CCGGCGACTACATCTGTATCC 60.068 57.143 9.30 0.00 0.00 2.59
155 156 1.880675 CGGCGACTACATCTGTATCCT 59.119 52.381 0.00 0.00 0.00 3.24
156 157 2.293677 CGGCGACTACATCTGTATCCTT 59.706 50.000 0.00 0.00 0.00 3.36
157 158 3.501062 CGGCGACTACATCTGTATCCTTA 59.499 47.826 0.00 0.00 0.00 2.69
158 159 4.023450 CGGCGACTACATCTGTATCCTTAA 60.023 45.833 0.00 0.00 0.00 1.85
159 160 5.221130 GGCGACTACATCTGTATCCTTAAC 58.779 45.833 0.00 0.00 0.00 2.01
160 161 5.221185 GGCGACTACATCTGTATCCTTAACA 60.221 44.000 0.00 0.00 0.00 2.41
161 162 6.270815 GCGACTACATCTGTATCCTTAACAA 58.729 40.000 0.00 0.00 0.00 2.83
162 163 6.418226 GCGACTACATCTGTATCCTTAACAAG 59.582 42.308 0.00 0.00 0.00 3.16
171 172 2.854522 CCTTAACAAGGGCGGTCTG 58.145 57.895 0.00 0.00 45.27 3.51
172 173 0.676782 CCTTAACAAGGGCGGTCTGG 60.677 60.000 0.00 0.00 45.27 3.86
173 174 0.676782 CTTAACAAGGGCGGTCTGGG 60.677 60.000 0.00 0.00 0.00 4.45
174 175 2.132089 TTAACAAGGGCGGTCTGGGG 62.132 60.000 0.00 0.00 0.00 4.96
190 191 3.480133 GGGGTCATGCTAGCCCGT 61.480 66.667 13.29 0.00 46.71 5.28
191 192 2.590092 GGGTCATGCTAGCCCGTT 59.410 61.111 13.29 0.00 32.16 4.44
192 193 1.523938 GGGTCATGCTAGCCCGTTC 60.524 63.158 13.29 0.00 32.16 3.95
193 194 1.220749 GGTCATGCTAGCCCGTTCA 59.779 57.895 13.29 0.00 0.00 3.18
194 195 0.392461 GGTCATGCTAGCCCGTTCAA 60.392 55.000 13.29 0.00 0.00 2.69
195 196 1.448985 GTCATGCTAGCCCGTTCAAA 58.551 50.000 13.29 0.00 0.00 2.69
196 197 1.398390 GTCATGCTAGCCCGTTCAAAG 59.602 52.381 13.29 0.00 0.00 2.77
197 198 1.003118 TCATGCTAGCCCGTTCAAAGT 59.997 47.619 13.29 0.00 0.00 2.66
198 199 1.131126 CATGCTAGCCCGTTCAAAGTG 59.869 52.381 13.29 0.00 0.00 3.16
199 200 0.394938 TGCTAGCCCGTTCAAAGTGA 59.605 50.000 13.29 0.00 0.00 3.41
200 201 1.202710 TGCTAGCCCGTTCAAAGTGAA 60.203 47.619 13.29 0.00 33.32 3.18
201 202 2.084546 GCTAGCCCGTTCAAAGTGAAT 58.915 47.619 2.29 0.00 38.79 2.57
202 203 2.096013 GCTAGCCCGTTCAAAGTGAATC 59.904 50.000 2.29 0.00 38.79 2.52
203 204 2.270352 AGCCCGTTCAAAGTGAATCA 57.730 45.000 0.00 0.00 38.79 2.57
204 205 2.582052 AGCCCGTTCAAAGTGAATCAA 58.418 42.857 0.00 0.00 38.79 2.57
205 206 3.157087 AGCCCGTTCAAAGTGAATCAAT 58.843 40.909 0.00 0.00 38.79 2.57
206 207 4.331968 AGCCCGTTCAAAGTGAATCAATA 58.668 39.130 0.00 0.00 38.79 1.90
207 208 4.764823 AGCCCGTTCAAAGTGAATCAATAA 59.235 37.500 0.00 0.00 38.79 1.40
208 209 5.242838 AGCCCGTTCAAAGTGAATCAATAAA 59.757 36.000 0.00 0.00 38.79 1.40
209 210 6.071391 AGCCCGTTCAAAGTGAATCAATAAAT 60.071 34.615 0.00 0.00 38.79 1.40
210 211 6.253512 GCCCGTTCAAAGTGAATCAATAAATC 59.746 38.462 0.00 0.00 38.79 2.17
211 212 6.751888 CCCGTTCAAAGTGAATCAATAAATCC 59.248 38.462 0.00 0.00 38.79 3.01
212 213 6.751888 CCGTTCAAAGTGAATCAATAAATCCC 59.248 38.462 0.00 0.00 38.79 3.85
213 214 7.362920 CCGTTCAAAGTGAATCAATAAATCCCT 60.363 37.037 0.00 0.00 38.79 4.20
214 215 8.028938 CGTTCAAAGTGAATCAATAAATCCCTT 58.971 33.333 0.00 0.00 38.79 3.95
220 221 8.930846 AGTGAATCAATAAATCCCTTATCAGG 57.069 34.615 0.00 0.00 40.45 3.86
221 222 8.506083 AGTGAATCAATAAATCCCTTATCAGGT 58.494 33.333 0.00 0.00 38.79 4.00
222 223 9.136323 GTGAATCAATAAATCCCTTATCAGGTT 57.864 33.333 0.00 0.00 38.79 3.50
251 252 9.129209 GAAGATAAATTTCTTCCTTTTCGGTTG 57.871 33.333 8.21 0.00 43.80 3.77
252 253 8.404107 AGATAAATTTCTTCCTTTTCGGTTGA 57.596 30.769 0.00 0.00 0.00 3.18
253 254 8.856103 AGATAAATTTCTTCCTTTTCGGTTGAA 58.144 29.630 0.00 0.00 0.00 2.69
254 255 9.471084 GATAAATTTCTTCCTTTTCGGTTGAAA 57.529 29.630 0.00 0.00 42.21 2.69
255 256 9.996554 ATAAATTTCTTCCTTTTCGGTTGAAAT 57.003 25.926 0.00 0.00 43.32 2.17
256 257 7.713764 AATTTCTTCCTTTTCGGTTGAAATG 57.286 32.000 0.00 0.00 43.32 2.32
260 261 2.810439 CTTTTCGGTTGAAATGGGCA 57.190 45.000 0.00 0.00 43.32 5.36
261 262 2.676076 CTTTTCGGTTGAAATGGGCAG 58.324 47.619 0.00 0.00 43.32 4.85
262 263 1.698506 TTTCGGTTGAAATGGGCAGT 58.301 45.000 0.00 0.00 39.13 4.40
263 264 1.698506 TTCGGTTGAAATGGGCAGTT 58.301 45.000 0.00 0.00 0.00 3.16
264 265 0.958091 TCGGTTGAAATGGGCAGTTG 59.042 50.000 0.00 0.00 0.00 3.16
265 266 0.667184 CGGTTGAAATGGGCAGTTGC 60.667 55.000 0.00 0.00 41.14 4.17
266 267 0.392336 GGTTGAAATGGGCAGTTGCA 59.608 50.000 6.43 0.00 44.36 4.08
267 268 1.501169 GTTGAAATGGGCAGTTGCAC 58.499 50.000 6.43 2.46 46.69 4.57
276 277 3.591196 GGGCAGTTGCACAATAAATCA 57.409 42.857 6.43 0.00 45.57 2.57
277 278 3.924144 GGGCAGTTGCACAATAAATCAA 58.076 40.909 6.43 0.00 45.57 2.57
278 279 4.314121 GGGCAGTTGCACAATAAATCAAA 58.686 39.130 6.43 0.00 45.57 2.69
279 280 4.389687 GGGCAGTTGCACAATAAATCAAAG 59.610 41.667 6.43 0.00 45.57 2.77
280 281 4.389687 GGCAGTTGCACAATAAATCAAAGG 59.610 41.667 6.43 0.00 44.36 3.11
281 282 4.143052 GCAGTTGCACAATAAATCAAAGGC 60.143 41.667 0.00 0.00 41.59 4.35
282 283 4.389687 CAGTTGCACAATAAATCAAAGGCC 59.610 41.667 0.00 0.00 0.00 5.19
283 284 4.284234 AGTTGCACAATAAATCAAAGGCCT 59.716 37.500 0.00 0.00 0.00 5.19
284 285 4.191033 TGCACAATAAATCAAAGGCCTG 57.809 40.909 5.69 0.00 0.00 4.85
285 286 3.831333 TGCACAATAAATCAAAGGCCTGA 59.169 39.130 5.69 0.00 0.00 3.86
286 287 4.282957 TGCACAATAAATCAAAGGCCTGAA 59.717 37.500 5.69 0.00 0.00 3.02
287 288 5.221601 TGCACAATAAATCAAAGGCCTGAAA 60.222 36.000 5.69 0.00 0.00 2.69
288 289 5.876460 GCACAATAAATCAAAGGCCTGAAAT 59.124 36.000 5.69 0.00 0.00 2.17
289 290 6.372381 GCACAATAAATCAAAGGCCTGAAATT 59.628 34.615 5.69 3.17 0.00 1.82
290 291 7.548780 GCACAATAAATCAAAGGCCTGAAATTA 59.451 33.333 5.69 6.08 0.00 1.40
291 292 8.872845 CACAATAAATCAAAGGCCTGAAATTAC 58.127 33.333 5.69 0.00 0.00 1.89
292 293 8.592809 ACAATAAATCAAAGGCCTGAAATTACA 58.407 29.630 5.69 0.00 0.00 2.41
293 294 8.872845 CAATAAATCAAAGGCCTGAAATTACAC 58.127 33.333 5.69 0.00 0.00 2.90
294 295 5.405935 AATCAAAGGCCTGAAATTACACC 57.594 39.130 5.69 0.00 0.00 4.16
295 296 3.161866 TCAAAGGCCTGAAATTACACCC 58.838 45.455 5.69 0.00 0.00 4.61
296 297 2.896685 CAAAGGCCTGAAATTACACCCA 59.103 45.455 5.69 0.00 0.00 4.51
297 298 2.215942 AGGCCTGAAATTACACCCAC 57.784 50.000 3.11 0.00 0.00 4.61
298 299 1.710809 AGGCCTGAAATTACACCCACT 59.289 47.619 3.11 0.00 0.00 4.00
299 300 2.110011 AGGCCTGAAATTACACCCACTT 59.890 45.455 3.11 0.00 0.00 3.16
300 301 2.231235 GGCCTGAAATTACACCCACTTG 59.769 50.000 0.00 0.00 0.00 3.16
301 302 2.890945 GCCTGAAATTACACCCACTTGT 59.109 45.455 0.00 0.00 0.00 3.16
302 303 3.057526 GCCTGAAATTACACCCACTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
303 304 3.506067 CCTGAAATTACACCCACTTGTCC 59.494 47.826 0.00 0.00 0.00 4.02
304 305 3.142951 TGAAATTACACCCACTTGTCCG 58.857 45.455 0.00 0.00 0.00 4.79
305 306 3.181453 TGAAATTACACCCACTTGTCCGA 60.181 43.478 0.00 0.00 0.00 4.55
306 307 2.467566 ATTACACCCACTTGTCCGAC 57.532 50.000 0.00 0.00 0.00 4.79
307 308 1.416243 TTACACCCACTTGTCCGACT 58.584 50.000 0.00 0.00 0.00 4.18
308 309 0.677288 TACACCCACTTGTCCGACTG 59.323 55.000 0.00 0.00 0.00 3.51
309 310 1.335132 ACACCCACTTGTCCGACTGT 61.335 55.000 0.00 0.00 0.00 3.55
310 311 0.179056 CACCCACTTGTCCGACTGTT 60.179 55.000 0.00 0.00 0.00 3.16
311 312 0.179056 ACCCACTTGTCCGACTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
312 313 1.507141 CCCACTTGTCCGACTGTTGC 61.507 60.000 0.00 0.00 0.00 4.17
313 314 0.532862 CCACTTGTCCGACTGTTGCT 60.533 55.000 0.00 0.00 0.00 3.91
314 315 0.861837 CACTTGTCCGACTGTTGCTC 59.138 55.000 0.00 0.00 0.00 4.26
315 316 0.597637 ACTTGTCCGACTGTTGCTCG 60.598 55.000 0.00 0.00 0.00 5.03
316 317 1.891060 CTTGTCCGACTGTTGCTCGC 61.891 60.000 0.00 0.00 0.00 5.03
317 318 3.112709 GTCCGACTGTTGCTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
318 319 3.611674 TCCGACTGTTGCTCGCCA 61.612 61.111 0.00 0.00 0.00 5.69
319 320 2.434884 CCGACTGTTGCTCGCCAT 60.435 61.111 0.00 0.00 0.00 4.40
320 321 2.743752 CCGACTGTTGCTCGCCATG 61.744 63.158 0.00 0.00 0.00 3.66
321 322 2.743752 CGACTGTTGCTCGCCATGG 61.744 63.158 7.63 7.63 0.00 3.66
322 323 2.360350 ACTGTTGCTCGCCATGGG 60.360 61.111 15.13 3.69 0.00 4.00
323 324 2.360350 CTGTTGCTCGCCATGGGT 60.360 61.111 15.13 0.00 0.00 4.51
324 325 1.973281 CTGTTGCTCGCCATGGGTT 60.973 57.895 15.13 0.00 0.00 4.11
325 326 2.203972 CTGTTGCTCGCCATGGGTTG 62.204 60.000 15.13 3.28 0.00 3.77
326 327 2.115052 TTGCTCGCCATGGGTTGT 59.885 55.556 15.13 0.00 0.00 3.32
327 328 0.958382 GTTGCTCGCCATGGGTTGTA 60.958 55.000 15.13 0.00 0.00 2.41
328 329 0.676466 TTGCTCGCCATGGGTTGTAG 60.676 55.000 15.13 0.00 0.00 2.74
329 330 2.472909 GCTCGCCATGGGTTGTAGC 61.473 63.158 15.13 5.04 0.00 3.58
330 331 1.078497 CTCGCCATGGGTTGTAGCA 60.078 57.895 15.13 0.00 0.00 3.49
331 332 0.464373 CTCGCCATGGGTTGTAGCAT 60.464 55.000 15.13 0.00 0.00 3.79
332 333 0.034574 TCGCCATGGGTTGTAGCATT 60.035 50.000 15.13 0.00 0.00 3.56
333 334 0.101040 CGCCATGGGTTGTAGCATTG 59.899 55.000 15.13 0.00 0.00 2.82
334 335 0.461135 GCCATGGGTTGTAGCATTGG 59.539 55.000 15.13 0.00 0.00 3.16
335 336 1.113788 CCATGGGTTGTAGCATTGGG 58.886 55.000 2.85 0.00 0.00 4.12
336 337 1.619432 CCATGGGTTGTAGCATTGGGT 60.619 52.381 2.85 0.00 0.00 4.51
337 338 1.750778 CATGGGTTGTAGCATTGGGTC 59.249 52.381 0.00 0.00 0.00 4.46
338 339 0.322098 TGGGTTGTAGCATTGGGTCG 60.322 55.000 0.00 0.00 0.00 4.79
339 340 0.035820 GGGTTGTAGCATTGGGTCGA 60.036 55.000 0.00 0.00 0.00 4.20
340 341 1.612199 GGGTTGTAGCATTGGGTCGAA 60.612 52.381 0.00 0.00 0.00 3.71
341 342 1.467342 GGTTGTAGCATTGGGTCGAAC 59.533 52.381 0.00 0.00 0.00 3.95
342 343 2.423577 GTTGTAGCATTGGGTCGAACT 58.576 47.619 0.00 0.00 0.00 3.01
343 344 3.592059 GTTGTAGCATTGGGTCGAACTA 58.408 45.455 0.00 0.00 0.00 2.24
344 345 4.189231 GTTGTAGCATTGGGTCGAACTAT 58.811 43.478 0.00 0.00 0.00 2.12
345 346 4.481368 TGTAGCATTGGGTCGAACTATT 57.519 40.909 0.00 0.00 0.00 1.73
346 347 4.839121 TGTAGCATTGGGTCGAACTATTT 58.161 39.130 0.00 0.00 0.00 1.40
347 348 4.634004 TGTAGCATTGGGTCGAACTATTTG 59.366 41.667 0.00 0.00 0.00 2.32
348 349 3.950397 AGCATTGGGTCGAACTATTTGA 58.050 40.909 0.00 0.00 0.00 2.69
349 350 4.331968 AGCATTGGGTCGAACTATTTGAA 58.668 39.130 0.00 0.00 0.00 2.69
350 351 4.396166 AGCATTGGGTCGAACTATTTGAAG 59.604 41.667 0.00 0.00 0.00 3.02
351 352 4.438744 GCATTGGGTCGAACTATTTGAAGG 60.439 45.833 0.00 0.00 0.00 3.46
352 353 4.627284 TTGGGTCGAACTATTTGAAGGA 57.373 40.909 0.00 0.00 0.00 3.36
353 354 4.202245 TGGGTCGAACTATTTGAAGGAG 57.798 45.455 0.00 0.00 0.00 3.69
354 355 3.055385 TGGGTCGAACTATTTGAAGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
355 356 3.197116 GGGTCGAACTATTTGAAGGAGGA 59.803 47.826 0.00 0.00 0.00 3.71
356 357 4.434520 GGTCGAACTATTTGAAGGAGGAG 58.565 47.826 0.00 0.00 0.00 3.69
357 358 4.434520 GTCGAACTATTTGAAGGAGGAGG 58.565 47.826 0.00 0.00 0.00 4.30
358 359 3.118738 TCGAACTATTTGAAGGAGGAGGC 60.119 47.826 0.00 0.00 0.00 4.70
359 360 3.546724 GAACTATTTGAAGGAGGAGGCC 58.453 50.000 0.00 0.00 0.00 5.19
360 361 2.852130 ACTATTTGAAGGAGGAGGCCT 58.148 47.619 3.86 3.86 40.93 5.19
369 370 3.653835 AGGAGGAGGCCTTTGATTTAC 57.346 47.619 6.77 0.00 33.46 2.01
370 371 2.242452 AGGAGGAGGCCTTTGATTTACC 59.758 50.000 6.77 0.00 33.46 2.85
371 372 2.656002 GAGGAGGCCTTTGATTTACCC 58.344 52.381 6.77 0.00 31.76 3.69
372 373 2.242452 GAGGAGGCCTTTGATTTACCCT 59.758 50.000 6.77 4.86 31.76 4.34
373 374 3.458487 GAGGAGGCCTTTGATTTACCCTA 59.542 47.826 6.77 0.00 31.76 3.53
374 375 4.055094 AGGAGGCCTTTGATTTACCCTAT 58.945 43.478 6.77 0.00 0.00 2.57
375 376 5.232347 AGGAGGCCTTTGATTTACCCTATA 58.768 41.667 6.77 0.00 0.00 1.31
376 377 5.674958 AGGAGGCCTTTGATTTACCCTATAA 59.325 40.000 6.77 0.00 0.00 0.98
377 378 6.004574 GGAGGCCTTTGATTTACCCTATAAG 58.995 44.000 6.77 0.00 0.00 1.73
378 379 6.183361 GGAGGCCTTTGATTTACCCTATAAGA 60.183 42.308 6.77 0.00 0.00 2.10
379 380 6.842676 AGGCCTTTGATTTACCCTATAAGAG 58.157 40.000 0.00 0.00 0.00 2.85
380 381 6.619852 AGGCCTTTGATTTACCCTATAAGAGA 59.380 38.462 0.00 0.00 0.00 3.10
381 382 6.937465 GGCCTTTGATTTACCCTATAAGAGAG 59.063 42.308 0.00 0.00 0.00 3.20
382 383 7.420330 GGCCTTTGATTTACCCTATAAGAGAGT 60.420 40.741 0.00 0.00 0.00 3.24
383 384 7.993758 GCCTTTGATTTACCCTATAAGAGAGTT 59.006 37.037 0.00 0.00 0.00 3.01
506 507 1.204704 AGGTAAACGCCCCGTAGTAAC 59.795 52.381 0.00 0.00 39.99 2.50
894 897 9.692749 TTACTTCGATCAAGATATTGGACATAC 57.307 33.333 0.00 0.00 35.82 2.39
941 945 5.407407 AAAGGAGTAATCGACTGTGACAT 57.593 39.130 0.00 0.00 39.06 3.06
1041 1046 2.786512 TAGTAACGTGGTCCCGGGCT 62.787 60.000 18.49 6.12 0.00 5.19
1450 1456 5.136828 TCCCTATGTCTGTTTTCAAAGCAA 58.863 37.500 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.994852 TCGCTACTTACAATTTCAGCACTT 59.005 37.500 0.00 0.00 0.00 3.16
1 2 4.566004 TCGCTACTTACAATTTCAGCACT 58.434 39.130 0.00 0.00 0.00 4.40
2 3 4.389077 ACTCGCTACTTACAATTTCAGCAC 59.611 41.667 0.00 0.00 0.00 4.40
3 4 4.566004 ACTCGCTACTTACAATTTCAGCA 58.434 39.130 0.00 0.00 0.00 4.41
4 5 5.805994 ACTACTCGCTACTTACAATTTCAGC 59.194 40.000 0.00 0.00 0.00 4.26
5 6 7.813852 AACTACTCGCTACTTACAATTTCAG 57.186 36.000 0.00 0.00 0.00 3.02
6 7 7.868922 TCAAACTACTCGCTACTTACAATTTCA 59.131 33.333 0.00 0.00 0.00 2.69
7 8 8.236084 TCAAACTACTCGCTACTTACAATTTC 57.764 34.615 0.00 0.00 0.00 2.17
8 9 8.773404 ATCAAACTACTCGCTACTTACAATTT 57.227 30.769 0.00 0.00 0.00 1.82
9 10 9.517609 CTATCAAACTACTCGCTACTTACAATT 57.482 33.333 0.00 0.00 0.00 2.32
10 11 7.648510 GCTATCAAACTACTCGCTACTTACAAT 59.351 37.037 0.00 0.00 0.00 2.71
11 12 6.971184 GCTATCAAACTACTCGCTACTTACAA 59.029 38.462 0.00 0.00 0.00 2.41
12 13 6.094464 TGCTATCAAACTACTCGCTACTTACA 59.906 38.462 0.00 0.00 0.00 2.41
13 14 6.493116 TGCTATCAAACTACTCGCTACTTAC 58.507 40.000 0.00 0.00 0.00 2.34
14 15 6.688637 TGCTATCAAACTACTCGCTACTTA 57.311 37.500 0.00 0.00 0.00 2.24
15 16 5.578005 TGCTATCAAACTACTCGCTACTT 57.422 39.130 0.00 0.00 0.00 2.24
16 17 5.357314 TCTTGCTATCAAACTACTCGCTACT 59.643 40.000 0.00 0.00 0.00 2.57
17 18 5.579718 TCTTGCTATCAAACTACTCGCTAC 58.420 41.667 0.00 0.00 0.00 3.58
18 19 5.830000 TCTTGCTATCAAACTACTCGCTA 57.170 39.130 0.00 0.00 0.00 4.26
19 20 4.720649 TCTTGCTATCAAACTACTCGCT 57.279 40.909 0.00 0.00 0.00 4.93
20 21 7.644986 ATTATCTTGCTATCAAACTACTCGC 57.355 36.000 0.00 0.00 0.00 5.03
21 22 9.855361 CAAATTATCTTGCTATCAAACTACTCG 57.145 33.333 0.00 0.00 0.00 4.18
26 27 9.988350 CGTTACAAATTATCTTGCTATCAAACT 57.012 29.630 0.00 0.00 0.00 2.66
27 28 9.982291 TCGTTACAAATTATCTTGCTATCAAAC 57.018 29.630 0.00 0.00 0.00 2.93
29 30 8.335356 GCTCGTTACAAATTATCTTGCTATCAA 58.665 33.333 0.00 0.00 0.00 2.57
30 31 7.494298 TGCTCGTTACAAATTATCTTGCTATCA 59.506 33.333 0.00 0.00 0.00 2.15
31 32 7.851508 TGCTCGTTACAAATTATCTTGCTATC 58.148 34.615 0.00 0.00 0.00 2.08
32 33 7.786178 TGCTCGTTACAAATTATCTTGCTAT 57.214 32.000 0.00 0.00 0.00 2.97
33 34 7.333423 ACTTGCTCGTTACAAATTATCTTGCTA 59.667 33.333 0.00 0.00 0.00 3.49
34 35 6.149474 ACTTGCTCGTTACAAATTATCTTGCT 59.851 34.615 0.00 0.00 0.00 3.91
35 36 6.314784 ACTTGCTCGTTACAAATTATCTTGC 58.685 36.000 0.00 0.00 0.00 4.01
36 37 9.262472 GTTACTTGCTCGTTACAAATTATCTTG 57.738 33.333 0.00 0.00 0.00 3.02
37 38 8.166706 CGTTACTTGCTCGTTACAAATTATCTT 58.833 33.333 0.00 0.00 0.00 2.40
38 39 7.543172 TCGTTACTTGCTCGTTACAAATTATCT 59.457 33.333 0.00 0.00 0.00 1.98
39 40 7.669098 TCGTTACTTGCTCGTTACAAATTATC 58.331 34.615 0.00 0.00 0.00 1.75
40 41 7.585286 TCGTTACTTGCTCGTTACAAATTAT 57.415 32.000 0.00 0.00 0.00 1.28
41 42 7.585286 ATCGTTACTTGCTCGTTACAAATTA 57.415 32.000 0.00 0.00 0.00 1.40
42 43 5.910637 TCGTTACTTGCTCGTTACAAATT 57.089 34.783 0.00 0.00 0.00 1.82
43 44 7.585286 TTATCGTTACTTGCTCGTTACAAAT 57.415 32.000 0.00 0.00 0.00 2.32
44 45 7.585286 ATTATCGTTACTTGCTCGTTACAAA 57.415 32.000 0.00 0.00 0.00 2.83
45 46 7.970061 ACTATTATCGTTACTTGCTCGTTACAA 59.030 33.333 0.00 0.00 0.00 2.41
46 47 7.475015 ACTATTATCGTTACTTGCTCGTTACA 58.525 34.615 0.00 0.00 0.00 2.41
47 48 7.905031 ACTATTATCGTTACTTGCTCGTTAC 57.095 36.000 0.00 0.00 0.00 2.50
48 49 9.438291 GTTACTATTATCGTTACTTGCTCGTTA 57.562 33.333 0.00 0.00 0.00 3.18
49 50 7.970061 TGTTACTATTATCGTTACTTGCTCGTT 59.030 33.333 0.00 0.00 0.00 3.85
50 51 7.475015 TGTTACTATTATCGTTACTTGCTCGT 58.525 34.615 0.00 0.00 0.00 4.18
51 52 7.903452 TGTTACTATTATCGTTACTTGCTCG 57.097 36.000 0.00 0.00 0.00 5.03
52 53 9.298774 ACTTGTTACTATTATCGTTACTTGCTC 57.701 33.333 0.00 0.00 0.00 4.26
60 61 9.758651 TGATGCATACTTGTTACTATTATCGTT 57.241 29.630 0.00 0.00 0.00 3.85
61 62 9.758651 TTGATGCATACTTGTTACTATTATCGT 57.241 29.630 0.00 0.00 0.00 3.73
68 69 9.542462 GGATAACTTGATGCATACTTGTTACTA 57.458 33.333 0.00 0.00 0.00 1.82
69 70 7.499232 GGGATAACTTGATGCATACTTGTTACT 59.501 37.037 0.00 0.00 0.00 2.24
70 71 7.282224 TGGGATAACTTGATGCATACTTGTTAC 59.718 37.037 0.00 3.28 0.00 2.50
71 72 7.342581 TGGGATAACTTGATGCATACTTGTTA 58.657 34.615 0.00 7.73 0.00 2.41
72 73 6.186957 TGGGATAACTTGATGCATACTTGTT 58.813 36.000 0.00 5.69 0.00 2.83
73 74 5.754782 TGGGATAACTTGATGCATACTTGT 58.245 37.500 0.00 0.00 0.00 3.16
74 75 6.698008 TTGGGATAACTTGATGCATACTTG 57.302 37.500 0.00 0.00 0.00 3.16
75 76 6.491403 GGATTGGGATAACTTGATGCATACTT 59.509 38.462 0.00 0.00 0.00 2.24
76 77 6.006449 GGATTGGGATAACTTGATGCATACT 58.994 40.000 0.00 0.00 0.00 2.12
77 78 6.006449 AGGATTGGGATAACTTGATGCATAC 58.994 40.000 0.00 0.00 0.00 2.39
78 79 6.204852 AGGATTGGGATAACTTGATGCATA 57.795 37.500 0.00 0.00 0.00 3.14
79 80 5.070823 AGGATTGGGATAACTTGATGCAT 57.929 39.130 0.00 0.00 0.00 3.96
80 81 4.524802 AGGATTGGGATAACTTGATGCA 57.475 40.909 0.00 0.00 0.00 3.96
81 82 5.859205 AAAGGATTGGGATAACTTGATGC 57.141 39.130 0.00 0.00 0.00 3.91
82 83 7.408756 TCAAAAGGATTGGGATAACTTGATG 57.591 36.000 0.00 0.00 0.00 3.07
83 84 6.608808 CCTCAAAAGGATTGGGATAACTTGAT 59.391 38.462 0.00 0.00 46.67 2.57
84 85 5.951747 CCTCAAAAGGATTGGGATAACTTGA 59.048 40.000 0.00 0.00 46.67 3.02
85 86 5.394553 GCCTCAAAAGGATTGGGATAACTTG 60.395 44.000 0.00 0.00 46.67 3.16
86 87 4.711846 GCCTCAAAAGGATTGGGATAACTT 59.288 41.667 0.00 0.00 46.67 2.66
87 88 4.264352 TGCCTCAAAAGGATTGGGATAACT 60.264 41.667 0.00 0.00 46.67 2.24
88 89 4.023291 TGCCTCAAAAGGATTGGGATAAC 58.977 43.478 0.00 0.00 46.67 1.89
89 90 4.329638 TGCCTCAAAAGGATTGGGATAA 57.670 40.909 0.00 0.00 46.67 1.75
90 91 4.329638 TTGCCTCAAAAGGATTGGGATA 57.670 40.909 0.00 0.00 46.67 2.59
91 92 2.925966 TGCCTCAAAAGGATTGGGAT 57.074 45.000 0.00 0.00 46.67 3.85
92 93 2.692709 TTGCCTCAAAAGGATTGGGA 57.307 45.000 0.00 0.00 46.67 4.37
93 94 3.323751 CTTTGCCTCAAAAGGATTGGG 57.676 47.619 0.00 0.00 46.67 4.12
100 101 3.192212 GGTGAGATCCTTTGCCTCAAAAG 59.808 47.826 0.00 0.00 38.49 2.27
101 102 3.157087 GGTGAGATCCTTTGCCTCAAAA 58.843 45.455 0.00 0.00 38.49 2.44
102 103 2.376518 AGGTGAGATCCTTTGCCTCAAA 59.623 45.455 0.00 0.00 38.49 2.69
103 104 1.988107 AGGTGAGATCCTTTGCCTCAA 59.012 47.619 0.00 0.00 38.49 3.02
104 105 1.280133 CAGGTGAGATCCTTTGCCTCA 59.720 52.381 0.00 0.00 35.37 3.86
105 106 1.556911 TCAGGTGAGATCCTTTGCCTC 59.443 52.381 0.00 0.00 35.37 4.70
106 107 1.661463 TCAGGTGAGATCCTTTGCCT 58.339 50.000 0.00 0.00 35.37 4.75
107 108 2.026822 TCTTCAGGTGAGATCCTTTGCC 60.027 50.000 0.00 0.00 35.37 4.52
108 109 3.340814 TCTTCAGGTGAGATCCTTTGC 57.659 47.619 0.00 0.00 35.37 3.68
109 110 5.494724 TCATTCTTCAGGTGAGATCCTTTG 58.505 41.667 0.00 0.00 35.37 2.77
110 111 5.743117 CTCATTCTTCAGGTGAGATCCTTT 58.257 41.667 0.00 0.00 41.38 3.11
111 112 4.383989 GCTCATTCTTCAGGTGAGATCCTT 60.384 45.833 5.84 0.00 41.38 3.36
112 113 3.134442 GCTCATTCTTCAGGTGAGATCCT 59.866 47.826 5.84 0.00 41.38 3.24
113 114 3.465871 GCTCATTCTTCAGGTGAGATCC 58.534 50.000 5.84 0.00 41.38 3.36
114 115 3.465871 GGCTCATTCTTCAGGTGAGATC 58.534 50.000 5.84 0.00 41.38 2.75
115 116 2.158986 CGGCTCATTCTTCAGGTGAGAT 60.159 50.000 5.84 0.00 41.38 2.75
116 117 1.205655 CGGCTCATTCTTCAGGTGAGA 59.794 52.381 5.84 0.00 41.38 3.27
117 118 1.649664 CGGCTCATTCTTCAGGTGAG 58.350 55.000 0.00 0.00 41.69 3.51
118 119 0.250234 CCGGCTCATTCTTCAGGTGA 59.750 55.000 0.00 0.00 0.00 4.02
119 120 1.372087 GCCGGCTCATTCTTCAGGTG 61.372 60.000 22.15 0.00 0.00 4.00
120 121 1.078143 GCCGGCTCATTCTTCAGGT 60.078 57.895 22.15 0.00 0.00 4.00
121 122 2.176273 CGCCGGCTCATTCTTCAGG 61.176 63.158 26.68 0.00 0.00 3.86
122 123 1.153568 TCGCCGGCTCATTCTTCAG 60.154 57.895 26.68 4.37 0.00 3.02
123 124 1.447838 GTCGCCGGCTCATTCTTCA 60.448 57.895 26.68 0.00 0.00 3.02
124 125 0.102481 TAGTCGCCGGCTCATTCTTC 59.898 55.000 26.68 5.48 0.00 2.87
125 126 0.179108 GTAGTCGCCGGCTCATTCTT 60.179 55.000 26.68 5.30 0.00 2.52
126 127 1.320344 TGTAGTCGCCGGCTCATTCT 61.320 55.000 26.68 16.38 0.00 2.40
127 128 0.249489 ATGTAGTCGCCGGCTCATTC 60.249 55.000 26.68 12.51 0.00 2.67
128 129 0.249489 GATGTAGTCGCCGGCTCATT 60.249 55.000 26.68 10.23 0.00 2.57
129 130 1.109920 AGATGTAGTCGCCGGCTCAT 61.110 55.000 26.68 19.06 0.00 2.90
130 131 1.753078 AGATGTAGTCGCCGGCTCA 60.753 57.895 26.68 15.26 0.00 4.26
131 132 1.299468 CAGATGTAGTCGCCGGCTC 60.299 63.158 26.68 17.37 0.00 4.70
132 133 0.750546 TACAGATGTAGTCGCCGGCT 60.751 55.000 26.68 8.66 0.00 5.52
133 134 0.314302 ATACAGATGTAGTCGCCGGC 59.686 55.000 19.07 19.07 33.52 6.13
134 135 1.068472 GGATACAGATGTAGTCGCCGG 60.068 57.143 0.00 0.00 33.52 6.13
135 136 1.880675 AGGATACAGATGTAGTCGCCG 59.119 52.381 0.00 0.00 41.41 6.46
136 137 5.221130 GTTAAGGATACAGATGTAGTCGCC 58.779 45.833 0.00 0.00 41.41 5.54
137 138 5.828747 TGTTAAGGATACAGATGTAGTCGC 58.171 41.667 0.00 0.00 41.41 5.19
138 139 7.916128 CTTGTTAAGGATACAGATGTAGTCG 57.084 40.000 0.00 0.00 41.41 4.18
154 155 0.676782 CCCAGACCGCCCTTGTTAAG 60.677 60.000 0.00 0.00 0.00 1.85
155 156 1.377229 CCCAGACCGCCCTTGTTAA 59.623 57.895 0.00 0.00 0.00 2.01
156 157 2.598787 CCCCAGACCGCCCTTGTTA 61.599 63.158 0.00 0.00 0.00 2.41
157 158 3.966543 CCCCAGACCGCCCTTGTT 61.967 66.667 0.00 0.00 0.00 2.83
172 173 4.256180 CGGGCTAGCATGACCCCC 62.256 72.222 18.24 5.42 40.86 5.40
173 174 2.942648 GAACGGGCTAGCATGACCCC 62.943 65.000 18.24 6.20 40.86 4.95
174 175 1.523938 GAACGGGCTAGCATGACCC 60.524 63.158 18.24 6.98 40.51 4.46
175 176 0.392461 TTGAACGGGCTAGCATGACC 60.392 55.000 18.24 7.39 0.00 4.02
176 177 1.398390 CTTTGAACGGGCTAGCATGAC 59.602 52.381 18.24 8.37 0.00 3.06
177 178 1.003118 ACTTTGAACGGGCTAGCATGA 59.997 47.619 18.24 0.00 0.00 3.07
178 179 1.131126 CACTTTGAACGGGCTAGCATG 59.869 52.381 18.24 10.53 0.00 4.06
179 180 1.003118 TCACTTTGAACGGGCTAGCAT 59.997 47.619 18.24 0.00 0.00 3.79
180 181 0.394938 TCACTTTGAACGGGCTAGCA 59.605 50.000 18.24 0.00 0.00 3.49
181 182 1.519408 TTCACTTTGAACGGGCTAGC 58.481 50.000 6.04 6.04 30.26 3.42
182 183 3.334691 TGATTCACTTTGAACGGGCTAG 58.665 45.455 0.00 0.00 39.45 3.42
183 184 3.410631 TGATTCACTTTGAACGGGCTA 57.589 42.857 0.00 0.00 39.45 3.93
184 185 2.270352 TGATTCACTTTGAACGGGCT 57.730 45.000 0.00 0.00 39.45 5.19
185 186 3.575965 ATTGATTCACTTTGAACGGGC 57.424 42.857 0.00 0.00 39.45 6.13
186 187 6.751888 GGATTTATTGATTCACTTTGAACGGG 59.248 38.462 0.00 0.00 39.45 5.28
187 188 6.751888 GGGATTTATTGATTCACTTTGAACGG 59.248 38.462 0.00 0.00 39.45 4.44
188 189 7.538575 AGGGATTTATTGATTCACTTTGAACG 58.461 34.615 0.00 0.00 39.45 3.95
194 195 9.359653 CCTGATAAGGGATTTATTGATTCACTT 57.640 33.333 0.00 0.00 35.92 3.16
195 196 8.506083 ACCTGATAAGGGATTTATTGATTCACT 58.494 33.333 0.00 0.00 32.09 3.41
196 197 8.697507 ACCTGATAAGGGATTTATTGATTCAC 57.302 34.615 0.00 0.00 32.09 3.18
226 227 8.856103 TCAACCGAAAAGGAAGAAATTTATCTT 58.144 29.630 0.00 0.00 45.00 2.40
227 228 8.404107 TCAACCGAAAAGGAAGAAATTTATCT 57.596 30.769 0.00 0.00 45.00 1.98
228 229 9.471084 TTTCAACCGAAAAGGAAGAAATTTATC 57.529 29.630 0.00 0.00 45.00 1.75
229 230 9.996554 ATTTCAACCGAAAAGGAAGAAATTTAT 57.003 25.926 12.19 0.00 45.33 1.40
230 231 9.255304 CATTTCAACCGAAAAGGAAGAAATTTA 57.745 29.630 14.03 0.00 45.33 1.40
231 232 8.141835 CATTTCAACCGAAAAGGAAGAAATTT 57.858 30.769 14.03 0.00 45.33 1.82
232 233 7.713764 CATTTCAACCGAAAAGGAAGAAATT 57.286 32.000 14.03 0.00 45.33 1.82
240 241 1.342819 TGCCCATTTCAACCGAAAAGG 59.657 47.619 2.91 2.91 45.52 3.11
241 242 2.035832 ACTGCCCATTTCAACCGAAAAG 59.964 45.455 0.00 0.00 44.12 2.27
242 243 2.035632 ACTGCCCATTTCAACCGAAAA 58.964 42.857 0.00 0.00 44.12 2.29
243 244 1.698506 ACTGCCCATTTCAACCGAAA 58.301 45.000 0.00 0.00 44.99 3.46
244 245 1.339610 CAACTGCCCATTTCAACCGAA 59.660 47.619 0.00 0.00 0.00 4.30
245 246 0.958091 CAACTGCCCATTTCAACCGA 59.042 50.000 0.00 0.00 0.00 4.69
246 247 0.667184 GCAACTGCCCATTTCAACCG 60.667 55.000 0.00 0.00 34.31 4.44
247 248 0.392336 TGCAACTGCCCATTTCAACC 59.608 50.000 0.00 0.00 41.18 3.77
248 249 1.202510 TGTGCAACTGCCCATTTCAAC 60.203 47.619 0.00 0.00 41.18 3.18
249 250 1.117994 TGTGCAACTGCCCATTTCAA 58.882 45.000 0.00 0.00 41.18 2.69
250 251 1.117994 TTGTGCAACTGCCCATTTCA 58.882 45.000 0.00 0.00 41.18 2.69
251 252 2.460757 ATTGTGCAACTGCCCATTTC 57.539 45.000 0.00 0.00 41.18 2.17
252 253 4.348863 TTTATTGTGCAACTGCCCATTT 57.651 36.364 0.00 0.00 41.18 2.32
253 254 4.020396 TGATTTATTGTGCAACTGCCCATT 60.020 37.500 0.00 0.00 41.18 3.16
254 255 3.514706 TGATTTATTGTGCAACTGCCCAT 59.485 39.130 0.00 0.00 41.18 4.00
255 256 2.896044 TGATTTATTGTGCAACTGCCCA 59.104 40.909 0.00 0.00 41.18 5.36
256 257 3.591196 TGATTTATTGTGCAACTGCCC 57.409 42.857 0.00 0.00 41.18 5.36
257 258 4.389687 CCTTTGATTTATTGTGCAACTGCC 59.610 41.667 0.00 0.00 41.18 4.85
258 259 4.143052 GCCTTTGATTTATTGTGCAACTGC 60.143 41.667 0.00 0.00 38.04 4.40
259 260 4.389687 GGCCTTTGATTTATTGTGCAACTG 59.610 41.667 0.00 0.00 38.04 3.16
260 261 4.284234 AGGCCTTTGATTTATTGTGCAACT 59.716 37.500 0.00 0.00 38.04 3.16
261 262 4.389687 CAGGCCTTTGATTTATTGTGCAAC 59.610 41.667 0.00 0.00 37.35 4.17
262 263 4.282957 TCAGGCCTTTGATTTATTGTGCAA 59.717 37.500 0.00 0.00 0.00 4.08
263 264 3.831333 TCAGGCCTTTGATTTATTGTGCA 59.169 39.130 0.00 0.00 0.00 4.57
264 265 4.454728 TCAGGCCTTTGATTTATTGTGC 57.545 40.909 0.00 0.00 0.00 4.57
265 266 7.910441 AATTTCAGGCCTTTGATTTATTGTG 57.090 32.000 0.00 0.00 0.00 3.33
266 267 8.592809 TGTAATTTCAGGCCTTTGATTTATTGT 58.407 29.630 0.00 0.00 0.00 2.71
267 268 8.872845 GTGTAATTTCAGGCCTTTGATTTATTG 58.127 33.333 0.00 0.00 0.00 1.90
268 269 8.040727 GGTGTAATTTCAGGCCTTTGATTTATT 58.959 33.333 0.00 3.00 0.00 1.40
269 270 7.364673 GGGTGTAATTTCAGGCCTTTGATTTAT 60.365 37.037 0.00 0.00 0.00 1.40
270 271 6.071051 GGGTGTAATTTCAGGCCTTTGATTTA 60.071 38.462 0.00 0.00 0.00 1.40
271 272 5.279960 GGGTGTAATTTCAGGCCTTTGATTT 60.280 40.000 0.00 0.00 0.00 2.17
272 273 4.222810 GGGTGTAATTTCAGGCCTTTGATT 59.777 41.667 0.00 5.98 0.00 2.57
273 274 3.769300 GGGTGTAATTTCAGGCCTTTGAT 59.231 43.478 0.00 0.00 0.00 2.57
274 275 3.161866 GGGTGTAATTTCAGGCCTTTGA 58.838 45.455 0.00 0.00 0.00 2.69
275 276 2.896685 TGGGTGTAATTTCAGGCCTTTG 59.103 45.455 0.00 0.00 0.00 2.77
276 277 2.897326 GTGGGTGTAATTTCAGGCCTTT 59.103 45.455 0.00 0.00 0.00 3.11
277 278 2.110011 AGTGGGTGTAATTTCAGGCCTT 59.890 45.455 0.00 0.00 0.00 4.35
278 279 1.710809 AGTGGGTGTAATTTCAGGCCT 59.289 47.619 0.00 0.00 0.00 5.19
279 280 2.215942 AGTGGGTGTAATTTCAGGCC 57.784 50.000 0.00 0.00 0.00 5.19
280 281 2.890945 ACAAGTGGGTGTAATTTCAGGC 59.109 45.455 0.00 0.00 0.00 4.85
281 282 3.506067 GGACAAGTGGGTGTAATTTCAGG 59.494 47.826 0.00 0.00 0.00 3.86
282 283 3.188460 CGGACAAGTGGGTGTAATTTCAG 59.812 47.826 0.00 0.00 0.00 3.02
283 284 3.142951 CGGACAAGTGGGTGTAATTTCA 58.857 45.455 0.00 0.00 0.00 2.69
284 285 3.187842 GTCGGACAAGTGGGTGTAATTTC 59.812 47.826 2.62 0.00 0.00 2.17
285 286 3.143728 GTCGGACAAGTGGGTGTAATTT 58.856 45.455 2.62 0.00 0.00 1.82
286 287 2.370849 AGTCGGACAAGTGGGTGTAATT 59.629 45.455 11.27 0.00 0.00 1.40
287 288 1.975680 AGTCGGACAAGTGGGTGTAAT 59.024 47.619 11.27 0.00 0.00 1.89
288 289 1.069513 CAGTCGGACAAGTGGGTGTAA 59.930 52.381 11.27 0.00 0.00 2.41
289 290 0.677288 CAGTCGGACAAGTGGGTGTA 59.323 55.000 11.27 0.00 0.00 2.90
290 291 1.335132 ACAGTCGGACAAGTGGGTGT 61.335 55.000 11.27 1.03 0.00 4.16
291 292 0.179056 AACAGTCGGACAAGTGGGTG 60.179 55.000 11.27 0.37 0.00 4.61
292 293 0.179056 CAACAGTCGGACAAGTGGGT 60.179 55.000 11.27 0.00 0.00 4.51
293 294 1.507141 GCAACAGTCGGACAAGTGGG 61.507 60.000 11.27 6.20 0.00 4.61
294 295 0.532862 AGCAACAGTCGGACAAGTGG 60.533 55.000 11.27 7.28 0.00 4.00
295 296 0.861837 GAGCAACAGTCGGACAAGTG 59.138 55.000 11.27 5.83 0.00 3.16
296 297 0.597637 CGAGCAACAGTCGGACAAGT 60.598 55.000 11.27 5.69 33.66 3.16
297 298 1.891060 GCGAGCAACAGTCGGACAAG 61.891 60.000 11.27 5.03 37.91 3.16
298 299 1.954146 GCGAGCAACAGTCGGACAA 60.954 57.895 11.27 0.00 37.91 3.18
299 300 2.355837 GCGAGCAACAGTCGGACA 60.356 61.111 11.27 0.00 37.91 4.02
300 301 3.112709 GGCGAGCAACAGTCGGAC 61.113 66.667 0.00 0.00 37.91 4.79
301 302 2.942796 ATGGCGAGCAACAGTCGGA 61.943 57.895 0.00 0.00 37.91 4.55
302 303 2.434884 ATGGCGAGCAACAGTCGG 60.435 61.111 0.00 0.00 37.91 4.79
303 304 2.743752 CCATGGCGAGCAACAGTCG 61.744 63.158 0.00 0.00 40.50 4.18
304 305 2.401766 CCCATGGCGAGCAACAGTC 61.402 63.158 6.09 0.00 0.00 3.51
305 306 2.360350 CCCATGGCGAGCAACAGT 60.360 61.111 6.09 0.00 0.00 3.55
306 307 1.973281 AACCCATGGCGAGCAACAG 60.973 57.895 6.09 0.00 0.00 3.16
307 308 2.115052 AACCCATGGCGAGCAACA 59.885 55.556 6.09 0.00 0.00 3.33
308 309 0.958382 TACAACCCATGGCGAGCAAC 60.958 55.000 6.09 0.00 0.00 4.17
309 310 0.676466 CTACAACCCATGGCGAGCAA 60.676 55.000 6.09 0.00 0.00 3.91
310 311 1.078497 CTACAACCCATGGCGAGCA 60.078 57.895 6.09 0.00 0.00 4.26
311 312 2.472909 GCTACAACCCATGGCGAGC 61.473 63.158 6.09 6.04 0.00 5.03
312 313 0.464373 ATGCTACAACCCATGGCGAG 60.464 55.000 6.09 0.00 0.00 5.03
313 314 0.034574 AATGCTACAACCCATGGCGA 60.035 50.000 6.09 0.00 0.00 5.54
314 315 0.101040 CAATGCTACAACCCATGGCG 59.899 55.000 6.09 2.02 0.00 5.69
315 316 0.461135 CCAATGCTACAACCCATGGC 59.539 55.000 6.09 0.00 0.00 4.40
316 317 1.113788 CCCAATGCTACAACCCATGG 58.886 55.000 4.14 4.14 0.00 3.66
317 318 1.750778 GACCCAATGCTACAACCCATG 59.249 52.381 0.00 0.00 0.00 3.66
318 319 1.681780 CGACCCAATGCTACAACCCAT 60.682 52.381 0.00 0.00 0.00 4.00
319 320 0.322098 CGACCCAATGCTACAACCCA 60.322 55.000 0.00 0.00 0.00 4.51
320 321 0.035820 TCGACCCAATGCTACAACCC 60.036 55.000 0.00 0.00 0.00 4.11
321 322 1.467342 GTTCGACCCAATGCTACAACC 59.533 52.381 0.00 0.00 0.00 3.77
322 323 2.423577 AGTTCGACCCAATGCTACAAC 58.576 47.619 0.00 0.00 0.00 3.32
323 324 2.851263 AGTTCGACCCAATGCTACAA 57.149 45.000 0.00 0.00 0.00 2.41
324 325 4.481368 AATAGTTCGACCCAATGCTACA 57.519 40.909 0.00 0.00 0.00 2.74
325 326 4.873827 TCAAATAGTTCGACCCAATGCTAC 59.126 41.667 0.00 0.00 0.00 3.58
326 327 5.092554 TCAAATAGTTCGACCCAATGCTA 57.907 39.130 0.00 0.00 0.00 3.49
327 328 3.950397 TCAAATAGTTCGACCCAATGCT 58.050 40.909 0.00 0.00 0.00 3.79
328 329 4.438744 CCTTCAAATAGTTCGACCCAATGC 60.439 45.833 0.00 0.00 0.00 3.56
329 330 4.941263 TCCTTCAAATAGTTCGACCCAATG 59.059 41.667 0.00 0.00 0.00 2.82
330 331 5.174037 TCCTTCAAATAGTTCGACCCAAT 57.826 39.130 0.00 0.00 0.00 3.16
331 332 4.564821 CCTCCTTCAAATAGTTCGACCCAA 60.565 45.833 0.00 0.00 0.00 4.12
332 333 3.055385 CCTCCTTCAAATAGTTCGACCCA 60.055 47.826 0.00 0.00 0.00 4.51
333 334 3.197116 TCCTCCTTCAAATAGTTCGACCC 59.803 47.826 0.00 0.00 0.00 4.46
334 335 4.434520 CTCCTCCTTCAAATAGTTCGACC 58.565 47.826 0.00 0.00 0.00 4.79
335 336 4.434520 CCTCCTCCTTCAAATAGTTCGAC 58.565 47.826 0.00 0.00 0.00 4.20
336 337 3.118738 GCCTCCTCCTTCAAATAGTTCGA 60.119 47.826 0.00 0.00 0.00 3.71
337 338 3.198872 GCCTCCTCCTTCAAATAGTTCG 58.801 50.000 0.00 0.00 0.00 3.95
338 339 3.201045 AGGCCTCCTCCTTCAAATAGTTC 59.799 47.826 0.00 0.00 30.82 3.01
339 340 3.193782 AGGCCTCCTCCTTCAAATAGTT 58.806 45.455 0.00 0.00 30.82 2.24
340 341 2.852130 AGGCCTCCTCCTTCAAATAGT 58.148 47.619 0.00 0.00 30.82 2.12
341 342 3.941704 AAGGCCTCCTCCTTCAAATAG 57.058 47.619 5.23 0.00 42.55 1.73
342 343 3.591527 TCAAAGGCCTCCTCCTTCAAATA 59.408 43.478 5.23 0.00 45.25 1.40
343 344 2.379907 TCAAAGGCCTCCTCCTTCAAAT 59.620 45.455 5.23 0.00 45.25 2.32
344 345 1.780309 TCAAAGGCCTCCTCCTTCAAA 59.220 47.619 5.23 0.00 45.25 2.69
345 346 1.444933 TCAAAGGCCTCCTCCTTCAA 58.555 50.000 5.23 0.00 45.25 2.69
346 347 1.673767 ATCAAAGGCCTCCTCCTTCA 58.326 50.000 5.23 0.00 45.25 3.02
347 348 2.816777 AATCAAAGGCCTCCTCCTTC 57.183 50.000 5.23 0.00 45.25 3.46
349 350 2.242452 GGTAAATCAAAGGCCTCCTCCT 59.758 50.000 5.23 0.00 38.31 3.69
350 351 2.656002 GGTAAATCAAAGGCCTCCTCC 58.344 52.381 5.23 0.00 30.89 4.30
351 352 2.242452 AGGGTAAATCAAAGGCCTCCTC 59.758 50.000 5.23 0.00 30.89 3.71
352 353 2.288525 AGGGTAAATCAAAGGCCTCCT 58.711 47.619 5.23 0.85 33.87 3.69
353 354 2.828661 AGGGTAAATCAAAGGCCTCC 57.171 50.000 5.23 0.00 0.00 4.30
354 355 6.838382 TCTTATAGGGTAAATCAAAGGCCTC 58.162 40.000 5.23 0.00 0.00 4.70
355 356 6.619852 TCTCTTATAGGGTAAATCAAAGGCCT 59.380 38.462 0.00 0.00 0.00 5.19
356 357 6.838382 TCTCTTATAGGGTAAATCAAAGGCC 58.162 40.000 0.00 0.00 0.00 5.19
357 358 7.510407 ACTCTCTTATAGGGTAAATCAAAGGC 58.490 38.462 0.00 0.00 37.05 4.35
362 363 9.322769 GGGATAACTCTCTTATAGGGTAAATCA 57.677 37.037 0.00 0.00 38.26 2.57
363 364 8.468399 CGGGATAACTCTCTTATAGGGTAAATC 58.532 40.741 0.00 0.00 38.26 2.17
364 365 7.954620 ACGGGATAACTCTCTTATAGGGTAAAT 59.045 37.037 0.00 0.00 38.26 1.40
365 366 7.300658 ACGGGATAACTCTCTTATAGGGTAAA 58.699 38.462 0.00 0.00 38.26 2.01
366 367 6.856757 ACGGGATAACTCTCTTATAGGGTAA 58.143 40.000 0.00 0.00 38.26 2.85
367 368 6.460103 ACGGGATAACTCTCTTATAGGGTA 57.540 41.667 0.00 0.00 38.26 3.69
368 369 5.336491 ACGGGATAACTCTCTTATAGGGT 57.664 43.478 0.00 0.00 42.40 4.34
369 370 6.667558 AAACGGGATAACTCTCTTATAGGG 57.332 41.667 0.00 0.00 0.00 3.53
370 371 8.406730 ACTAAACGGGATAACTCTCTTATAGG 57.593 38.462 0.00 0.00 0.00 2.57
373 374 9.022884 GGATACTAAACGGGATAACTCTCTTAT 57.977 37.037 0.00 0.00 0.00 1.73
374 375 7.449704 GGGATACTAAACGGGATAACTCTCTTA 59.550 40.741 0.00 0.00 0.00 2.10
375 376 6.267242 GGGATACTAAACGGGATAACTCTCTT 59.733 42.308 0.00 0.00 0.00 2.85
376 377 5.774184 GGGATACTAAACGGGATAACTCTCT 59.226 44.000 0.00 0.00 0.00 3.10
377 378 5.537674 TGGGATACTAAACGGGATAACTCTC 59.462 44.000 0.00 0.00 0.00 3.20
378 379 5.461327 TGGGATACTAAACGGGATAACTCT 58.539 41.667 0.00 0.00 0.00 3.24
379 380 5.796424 TGGGATACTAAACGGGATAACTC 57.204 43.478 0.00 0.00 0.00 3.01
380 381 6.564557 TTTGGGATACTAAACGGGATAACT 57.435 37.500 0.00 0.00 42.67 2.24
595 596 1.277842 TCTTCCAAGCGCAGGATAACA 59.722 47.619 20.31 6.64 34.56 2.41
894 897 7.784633 TTTTCCTTTTTAAAGAGTGGCATTG 57.215 32.000 5.15 0.00 38.28 2.82
921 925 4.017126 TCATGTCACAGTCGATTACTCCT 58.983 43.478 0.00 0.00 35.76 3.69
1041 1046 4.227300 ACCATTGTGGGTAGAATGCTAGAA 59.773 41.667 0.00 0.00 43.37 2.10
1128 1133 0.322997 CCCCCAATTTGCGACCTACA 60.323 55.000 0.00 0.00 0.00 2.74
1450 1456 4.150804 GCGAATCTCGTCAAGAACTCTTTT 59.849 41.667 0.00 0.00 42.81 2.27
2016 2046 2.772287 GGAACTTGAACCTGAGTCCAG 58.228 52.381 0.00 0.00 40.09 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.