Multiple sequence alignment - TraesCS5D01G219200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G219200 chr5D 100.000 4876 0 0 1 4876 328440337 328435462 0.000000e+00 9005
1 TraesCS5D01G219200 chr5A 94.543 4600 170 33 1 4546 428147456 428152028 0.000000e+00 7029
2 TraesCS5D01G219200 chr5A 93.220 236 13 3 4551 4784 428152444 428152678 1.300000e-90 344
3 TraesCS5D01G219200 chr5A 85.849 106 3 4 4769 4874 428152700 428152793 8.630000e-18 102
4 TraesCS5D01G219200 chr5B 92.592 4306 175 45 211 4436 381721028 381716787 0.000000e+00 6052
5 TraesCS5D01G219200 chr5B 91.860 172 5 5 4489 4659 129721944 129721781 1.060000e-56 231
6 TraesCS5D01G219200 chr5B 90.588 170 8 5 4489 4657 608637862 608638024 8.220000e-53 219
7 TraesCS5D01G219200 chr6D 85.529 463 67 0 13 475 337846824 337847286 7.340000e-133 484
8 TraesCS5D01G219200 chr6B 83.512 467 74 3 11 476 482469866 482469402 2.700000e-117 433
9 TraesCS5D01G219200 chr2D 83.297 461 70 6 11 467 617956762 617956305 7.550000e-113 418
10 TraesCS5D01G219200 chr2D 90.643 171 8 5 4489 4658 134301488 134301651 2.280000e-53 220
11 TraesCS5D01G219200 chr6A 82.869 467 76 4 12 475 478311243 478311708 2.710000e-112 416
12 TraesCS5D01G219200 chr1A 83.149 451 64 7 12 453 545756357 545755910 7.600000e-108 401
13 TraesCS5D01G219200 chr7B 82.340 470 67 14 3 465 464534150 464533690 1.270000e-105 394
14 TraesCS5D01G219200 chr7B 90.857 175 7 5 4485 4657 490207985 490208152 4.910000e-55 226
15 TraesCS5D01G219200 chr4B 82.112 464 78 5 13 475 601746501 601746042 4.580000e-105 392
16 TraesCS5D01G219200 chr4B 89.326 178 10 7 4485 4660 406389291 406389461 1.060000e-51 215
17 TraesCS5D01G219200 chr4A 83.294 425 67 3 13 435 153257845 153258267 5.920000e-104 388
18 TraesCS5D01G219200 chr7D 89.831 177 7 6 4485 4657 465477778 465477947 2.960000e-52 217
19 TraesCS5D01G219200 chr2A 89.655 174 10 5 4489 4661 135473228 135473394 1.060000e-51 215
20 TraesCS5D01G219200 chr3A 86.364 198 14 11 4466 4658 529671109 529671298 2.300000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G219200 chr5D 328435462 328440337 4875 True 9005.000000 9005 100.000 1 4876 1 chr5D.!!$R1 4875
1 TraesCS5D01G219200 chr5A 428147456 428152793 5337 False 2491.666667 7029 91.204 1 4874 3 chr5A.!!$F1 4873
2 TraesCS5D01G219200 chr5B 381716787 381721028 4241 True 6052.000000 6052 92.592 211 4436 1 chr5B.!!$R2 4225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 276 0.322187 GGACATTAGGGGCACGTGTT 60.322 55.000 18.38 3.44 0.00 3.32 F
599 612 0.496841 AGGGGGAGTACTTCTTGGGT 59.503 55.000 0.01 0.00 0.00 4.51 F
601 614 0.535797 GGGGAGTACTTCTTGGGTCG 59.464 60.000 0.01 0.00 0.00 4.79 F
1233 1266 1.073768 GCTTCGTGCTCGTCTTCCTC 61.074 60.000 8.17 0.00 38.95 3.71 F
1515 1548 1.364626 GCCACATGACGCTCTTCCTG 61.365 60.000 0.00 0.00 0.00 3.86 F
3340 3417 3.187637 TGCGTGTTTAATCTCTTTTCCCG 59.812 43.478 0.00 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1266 0.679002 CCATGGAGGTGTTCTGCCAG 60.679 60.000 5.56 0.00 33.26 4.85 R
2400 2462 2.309613 TGGCACATTAGAATCATGGCC 58.690 47.619 0.00 0.00 37.96 5.36 R
2474 2536 3.254060 TGAGTCTCAGCTAACGAAATGC 58.746 45.455 0.00 0.00 0.00 3.56 R
2796 2858 7.576477 GCTGAAACAAATAAGAGCTCAGGAATT 60.576 37.037 17.77 6.75 31.55 2.17 R
3350 3427 0.384309 TTCCTATAGACACGCCAGCG 59.616 55.000 11.05 11.05 46.03 5.18 R
4829 5384 0.099436 GATGCCCATTCGTTGCTCAC 59.901 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.362717 GATGGCGGCGCTACTTCTA 59.637 57.895 32.30 9.70 0.00 2.10
62 63 0.940047 GATGGCGGCGCTACTTCTAC 60.940 60.000 32.30 12.78 0.00 2.59
68 69 2.733227 GCGGCGCTACTTCTACAAGTTA 60.733 50.000 26.86 0.00 40.16 2.24
74 75 5.404667 GCGCTACTTCTACAAGTTAGTGTTT 59.595 40.000 0.00 0.00 40.16 2.83
99 100 2.649190 CTCTGATCCTCCTCGAGTTCA 58.351 52.381 12.31 5.54 0.00 3.18
103 104 1.268352 GATCCTCCTCGAGTTCATCCG 59.732 57.143 12.31 0.00 0.00 4.18
105 106 0.382515 CCTCCTCGAGTTCATCCGTC 59.617 60.000 12.31 0.00 0.00 4.79
129 130 3.321111 GGATGTAGTAAATGGAGCTCCGA 59.679 47.826 27.43 16.85 39.43 4.55
148 149 3.129988 CCGACGTAGGTTCCTATTGTCTT 59.870 47.826 20.87 0.36 31.04 3.01
194 195 5.535753 TCTCATCTTATGGCGAGATTTGA 57.464 39.130 0.00 0.00 31.66 2.69
195 196 6.106648 TCTCATCTTATGGCGAGATTTGAT 57.893 37.500 0.00 0.00 31.66 2.57
201 202 2.028420 TGGCGAGATTTGATGTCAGG 57.972 50.000 0.00 0.00 0.00 3.86
239 240 1.273455 GGGTTCAACGACGACGACAG 61.273 60.000 15.32 3.30 42.66 3.51
241 242 1.064458 TTCAACGACGACGACAGCA 59.936 52.632 15.32 0.00 42.66 4.41
246 248 2.505118 GACGACGACAGCAGCTCC 60.505 66.667 0.00 0.00 0.00 4.70
274 276 0.322187 GGACATTAGGGGCACGTGTT 60.322 55.000 18.38 3.44 0.00 3.32
283 285 1.282930 GGGCACGTGTTCGAAGACTC 61.283 60.000 21.47 11.12 40.62 3.36
293 295 2.943978 CGAAGACTCCCCGGCTGTT 61.944 63.158 0.00 0.00 0.00 3.16
309 311 3.585862 GCTGTTATCGACAAGGTCAAGA 58.414 45.455 0.00 0.00 37.93 3.02
312 314 3.253921 TGTTATCGACAAGGTCAAGACGA 59.746 43.478 0.00 0.00 34.69 4.20
317 319 0.680061 ACAAGGTCAAGACGACTCCC 59.320 55.000 0.00 0.00 44.70 4.30
319 321 2.126031 GGTCAAGACGACTCCCGC 60.126 66.667 0.00 0.00 44.70 6.13
362 364 2.184322 GGCGGCTCATTCTGACGA 59.816 61.111 0.00 0.00 0.00 4.20
364 366 2.508891 GCGGCTCATTCTGACGACG 61.509 63.158 0.00 0.00 32.06 5.12
380 382 2.036217 ACGACGGTAGTGATTGTTTGGA 59.964 45.455 0.00 0.00 0.00 3.53
473 475 9.762933 AAAAGATCTGAATGATTTTCCGAAAAA 57.237 25.926 10.27 0.00 38.66 1.94
524 529 6.978659 TGTCACTTCTAGTGTTTTGTACTGAG 59.021 38.462 6.71 0.00 46.03 3.35
599 612 0.496841 AGGGGGAGTACTTCTTGGGT 59.503 55.000 0.01 0.00 0.00 4.51
600 613 0.910338 GGGGGAGTACTTCTTGGGTC 59.090 60.000 0.01 0.00 0.00 4.46
601 614 0.535797 GGGGAGTACTTCTTGGGTCG 59.464 60.000 0.01 0.00 0.00 4.79
633 646 3.058224 GGAAGCGTAGAAGCAACAAACAT 60.058 43.478 0.00 0.00 40.15 2.71
1233 1266 1.073768 GCTTCGTGCTCGTCTTCCTC 61.074 60.000 8.17 0.00 38.95 3.71
1515 1548 1.364626 GCCACATGACGCTCTTCCTG 61.365 60.000 0.00 0.00 0.00 3.86
1659 1692 9.762933 AGTCGTGGTATAGTTAAACACTTAAAA 57.237 29.630 0.00 0.00 36.88 1.52
2046 2080 4.505922 TCCTTTTGTTGCATTTTAACGCTG 59.494 37.500 0.00 0.00 0.00 5.18
2106 2140 8.023128 TGCTTACTTGCTTAGTTCATTTCAATC 58.977 33.333 0.00 0.00 38.33 2.67
2183 2217 3.822735 ACTGCCATCATATTATGGTGTGC 59.177 43.478 15.75 15.81 46.93 4.57
2285 2319 7.097192 GCGACCACCTATCTTATAAATCATCA 58.903 38.462 0.00 0.00 0.00 3.07
2400 2462 8.676401 TGTTACCAGAATAATCATGAATGTGTG 58.324 33.333 0.00 0.00 0.00 3.82
2462 2524 5.707298 TCTTTCTATCAGCCTTTTTGTCCTG 59.293 40.000 0.00 0.00 0.00 3.86
2796 2858 5.831702 TTCCAACTTTTGCGGTTTACTTA 57.168 34.783 0.00 0.00 0.00 2.24
2867 2929 6.156949 TGACTGGATAACAATCTAGCCTCTTT 59.843 38.462 0.00 0.00 33.11 2.52
3176 3238 8.264347 AGGTAATTCATTTGTTTTGGTTCACTT 58.736 29.630 0.00 0.00 0.00 3.16
3228 3305 5.870433 TGAGATTGGCGAATAAGAACGTTAA 59.130 36.000 0.00 0.00 0.00 2.01
3229 3306 6.537301 TGAGATTGGCGAATAAGAACGTTAAT 59.463 34.615 0.00 0.00 0.00 1.40
3340 3417 3.187637 TGCGTGTTTAATCTCTTTTCCCG 59.812 43.478 0.00 0.00 0.00 5.14
3350 3427 0.034896 TCTTTTCCCGTCTGGACAGC 59.965 55.000 1.63 0.00 45.11 4.40
3854 3931 3.111853 TCGACACTGCAGAACATTTCT 57.888 42.857 23.35 0.00 41.70 2.52
4222 4311 3.876309 ACACCTTGTCCCTTGTGTAAT 57.124 42.857 0.00 0.00 39.98 1.89
4445 4550 7.930217 CAGTTGACTGAGAAAGGTTTGAAATA 58.070 34.615 5.19 0.00 46.59 1.40
4498 4603 3.687125 TCAGCAGTATATACTCCCTCCG 58.313 50.000 12.62 2.17 33.46 4.63
4512 4617 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4513 4618 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4546 4651 5.760253 AGATTTCAATAAGGACTGCATACGG 59.240 40.000 0.00 0.00 0.00 4.02
4547 4652 4.746535 TTCAATAAGGACTGCATACGGA 57.253 40.909 0.00 0.00 0.00 4.69
4548 4653 4.955811 TCAATAAGGACTGCATACGGAT 57.044 40.909 0.00 0.00 0.00 4.18
4549 4654 4.883083 TCAATAAGGACTGCATACGGATC 58.117 43.478 0.00 0.00 0.00 3.36
4551 4656 2.604046 AAGGACTGCATACGGATCAC 57.396 50.000 0.00 0.00 0.00 3.06
4608 5125 6.561614 TCACTCATTTTCTCCGTATGTAGTC 58.438 40.000 0.00 0.00 0.00 2.59
4610 5127 5.421056 ACTCATTTTCTCCGTATGTAGTCCA 59.579 40.000 0.00 0.00 0.00 4.02
4759 5277 4.144297 TGTCAAGTTTCTTCCATTCCTGG 58.856 43.478 0.00 0.00 44.64 4.45
4760 5278 3.507622 GTCAAGTTTCTTCCATTCCTGGG 59.492 47.826 0.00 0.00 43.34 4.45
4789 5344 3.567478 AGAGTTGGCTTCTTTCAGTGT 57.433 42.857 0.00 0.00 0.00 3.55
4792 5347 3.620488 AGTTGGCTTCTTTCAGTGTCAA 58.380 40.909 0.00 0.00 0.00 3.18
4793 5348 4.210331 AGTTGGCTTCTTTCAGTGTCAAT 58.790 39.130 0.00 0.00 0.00 2.57
4826 5381 6.239945 CGTGAACAATGTTCAAACAAAAAGG 58.760 36.000 27.77 7.16 43.03 3.11
4828 5383 5.123027 TGAACAATGTTCAAACAAAAAGGCC 59.877 36.000 24.63 0.00 43.03 5.19
4829 5384 3.620821 ACAATGTTCAAACAAAAAGGCCG 59.379 39.130 0.00 0.00 43.03 6.13
4830 5385 3.535280 ATGTTCAAACAAAAAGGCCGT 57.465 38.095 0.00 0.00 43.03 5.68
4831 5386 2.611518 TGTTCAAACAAAAAGGCCGTG 58.388 42.857 0.00 0.00 35.67 4.94
4832 5387 2.231478 TGTTCAAACAAAAAGGCCGTGA 59.769 40.909 0.00 0.00 35.67 4.35
4833 5388 2.857748 GTTCAAACAAAAAGGCCGTGAG 59.142 45.455 0.00 0.00 0.00 3.51
4834 5389 1.202359 TCAAACAAAAAGGCCGTGAGC 60.202 47.619 0.00 0.00 42.60 4.26
4835 5390 0.820871 AAACAAAAAGGCCGTGAGCA 59.179 45.000 0.00 0.00 46.50 4.26
4836 5391 0.820871 AACAAAAAGGCCGTGAGCAA 59.179 45.000 0.00 0.00 46.50 3.91
4837 5392 0.102300 ACAAAAAGGCCGTGAGCAAC 59.898 50.000 0.00 0.00 46.50 4.17
4874 5429 0.605589 AGAAGAAGCCCACGAGACAG 59.394 55.000 0.00 0.00 0.00 3.51
4875 5430 0.318762 GAAGAAGCCCACGAGACAGT 59.681 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.130118 CAGAGCCTGAAACACTAACTTGT 58.870 43.478 0.00 0.00 32.44 3.16
62 63 4.380531 TCAGAGCCTGAAACACTAACTTG 58.619 43.478 2.78 0.00 37.57 3.16
68 69 2.235898 GAGGATCAGAGCCTGAAACACT 59.764 50.000 13.41 5.44 44.04 3.55
74 75 0.467106 CGAGGAGGATCAGAGCCTGA 60.467 60.000 13.41 7.26 44.99 3.86
103 104 5.283457 AGCTCCATTTACTACATCCAGAC 57.717 43.478 0.00 0.00 0.00 3.51
105 106 4.636249 GGAGCTCCATTTACTACATCCAG 58.364 47.826 28.43 0.00 35.64 3.86
119 120 1.303888 AACCTACGTCGGAGCTCCA 60.304 57.895 31.67 16.40 35.14 3.86
129 130 5.704053 CCAAAAAGACAATAGGAACCTACGT 59.296 40.000 2.47 0.00 0.00 3.57
148 149 1.340600 CCTAATCTCACCGCCCCAAAA 60.341 52.381 0.00 0.00 0.00 2.44
194 195 1.911357 TGGATCTGAAGCACCTGACAT 59.089 47.619 0.00 0.00 0.00 3.06
195 196 1.351076 TGGATCTGAAGCACCTGACA 58.649 50.000 0.00 0.00 0.00 3.58
201 202 1.404391 CCTTGCATGGATCTGAAGCAC 59.596 52.381 13.33 0.00 34.56 4.40
246 248 1.524621 CCTAATGTCCAGCGCCCTG 60.525 63.158 2.29 0.00 38.85 4.45
253 255 0.744414 CACGTGCCCCTAATGTCCAG 60.744 60.000 0.82 0.00 0.00 3.86
257 259 0.672401 CGAACACGTGCCCCTAATGT 60.672 55.000 17.22 0.00 0.00 2.71
274 276 3.068691 CAGCCGGGGAGTCTTCGA 61.069 66.667 2.18 0.00 0.00 3.71
283 285 0.810031 CTTGTCGATAACAGCCGGGG 60.810 60.000 2.18 0.00 39.58 5.73
293 295 3.482722 GTCGTCTTGACCTTGTCGATA 57.517 47.619 0.00 0.00 42.04 2.92
319 321 3.423154 GTTGTCGCCGCTTCCCTG 61.423 66.667 0.00 0.00 0.00 4.45
353 355 3.192844 ACAATCACTACCGTCGTCAGAAT 59.807 43.478 0.00 0.00 0.00 2.40
362 364 2.370849 ACCTCCAAACAATCACTACCGT 59.629 45.455 0.00 0.00 0.00 4.83
364 366 4.287766 AGACCTCCAAACAATCACTACC 57.712 45.455 0.00 0.00 0.00 3.18
380 382 8.655935 AAAATTACATTGAGATTCCAAGACCT 57.344 30.769 0.00 0.00 0.00 3.85
524 529 7.397892 TCCGGTCTATTCTTCATCTATCATC 57.602 40.000 0.00 0.00 0.00 2.92
599 612 2.202797 GCTTCCGCTGATGCTCGA 60.203 61.111 8.48 0.00 38.33 4.04
600 613 2.936829 TACGCTTCCGCTGATGCTCG 62.937 60.000 12.90 2.82 39.00 5.03
601 614 1.211818 CTACGCTTCCGCTGATGCTC 61.212 60.000 12.90 0.00 39.00 4.26
1134 1167 4.308458 CGCCGGTGGTGGAACTGA 62.308 66.667 7.26 0.00 36.74 3.41
1233 1266 0.679002 CCATGGAGGTGTTCTGCCAG 60.679 60.000 5.56 0.00 33.26 4.85
1308 1341 3.274586 CACTGGCCCATCGATGCG 61.275 66.667 20.25 12.95 0.00 4.73
1659 1692 8.267183 TGTGAGTCACTAATTCATCATATGGTT 58.733 33.333 23.29 0.00 35.11 3.67
1660 1693 7.795047 TGTGAGTCACTAATTCATCATATGGT 58.205 34.615 23.29 0.00 35.11 3.55
2183 2217 3.508402 AGGGTGTTAATTTAAAGGCCACG 59.492 43.478 5.01 0.00 0.00 4.94
2289 2323 3.243724 AGGAGGCCTCATAACATAGGAC 58.756 50.000 33.29 11.81 41.70 3.85
2400 2462 2.309613 TGGCACATTAGAATCATGGCC 58.690 47.619 0.00 0.00 37.96 5.36
2462 2524 3.575965 ACGAAATGCCTGACCAATTTC 57.424 42.857 0.00 0.00 0.00 2.17
2474 2536 3.254060 TGAGTCTCAGCTAACGAAATGC 58.746 45.455 0.00 0.00 0.00 3.56
2796 2858 7.576477 GCTGAAACAAATAAGAGCTCAGGAATT 60.576 37.037 17.77 6.75 31.55 2.17
3176 3238 8.871629 TGATAAATTAACAGAAGGGCTAACAA 57.128 30.769 0.00 0.00 0.00 2.83
3228 3305 8.292444 TGAAAAGCTGCATTTTGGTACTATAT 57.708 30.769 4.22 0.00 32.62 0.86
3229 3306 7.695480 TGAAAAGCTGCATTTTGGTACTATA 57.305 32.000 4.22 0.00 32.62 1.31
3350 3427 0.384309 TTCCTATAGACACGCCAGCG 59.616 55.000 11.05 11.05 46.03 5.18
3638 3715 1.146263 CCCTTGTATCCTGACGGGC 59.854 63.158 0.00 0.00 34.39 6.13
3854 3931 6.552629 GTGTCAGAAACTGTAGTCGATATCA 58.447 40.000 3.12 0.00 32.61 2.15
4222 4311 8.103305 AGACTAGCAGAATAAGATTTGTTCCAA 58.897 33.333 0.00 0.00 31.92 3.53
4359 4452 6.099125 TCACCCTCTATGAATCCGTAAATCAA 59.901 38.462 0.00 0.00 0.00 2.57
4463 4568 2.433604 ACTGCTGATCCCTGACATGTAG 59.566 50.000 0.00 0.00 0.00 2.74
4465 4570 1.283347 ACTGCTGATCCCTGACATGT 58.717 50.000 0.00 0.00 0.00 3.21
4528 4633 4.449068 GTGATCCGTATGCAGTCCTTATTG 59.551 45.833 0.00 0.00 0.00 1.90
4531 4636 2.034179 CGTGATCCGTATGCAGTCCTTA 59.966 50.000 0.00 0.00 0.00 2.69
4539 4644 2.717580 TACATCCGTGATCCGTATGC 57.282 50.000 8.38 0.00 36.45 3.14
4578 5094 7.923344 ACATACGGAGAAAATGAGTGAATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
4646 5163 9.747898 TTTTGTACCAAATGTAATACTCCATCT 57.252 29.630 0.00 0.00 0.00 2.90
4648 5165 9.747898 TCTTTTGTACCAAATGTAATACTCCAT 57.252 29.630 0.00 0.00 0.00 3.41
4649 5166 9.575868 TTCTTTTGTACCAAATGTAATACTCCA 57.424 29.630 0.00 0.00 0.00 3.86
4694 5212 6.620877 TTTGGATGGACTAGTACTGACAAT 57.379 37.500 6.66 0.00 0.00 2.71
4710 5228 8.996651 ACTACTCCCCTAATTTATTTTGGATG 57.003 34.615 0.00 0.00 32.54 3.51
4789 5344 1.071542 TGTTCACGGCCTTCTCATTGA 59.928 47.619 0.00 0.00 0.00 2.57
4792 5347 2.086869 CATTGTTCACGGCCTTCTCAT 58.913 47.619 0.00 0.00 0.00 2.90
4793 5348 1.202758 ACATTGTTCACGGCCTTCTCA 60.203 47.619 0.00 0.00 0.00 3.27
4829 5384 0.099436 GATGCCCATTCGTTGCTCAC 59.901 55.000 0.00 0.00 0.00 3.51
4830 5385 1.031571 GGATGCCCATTCGTTGCTCA 61.032 55.000 0.00 0.00 0.00 4.26
4831 5386 1.031571 TGGATGCCCATTCGTTGCTC 61.032 55.000 0.00 0.00 37.58 4.26
4832 5387 0.611618 TTGGATGCCCATTCGTTGCT 60.612 50.000 0.00 0.00 43.12 3.91
4833 5388 0.458370 GTTGGATGCCCATTCGTTGC 60.458 55.000 0.00 0.00 43.12 4.17
4834 5389 1.176527 AGTTGGATGCCCATTCGTTG 58.823 50.000 0.00 0.00 43.12 4.10
4835 5390 1.923356 AAGTTGGATGCCCATTCGTT 58.077 45.000 0.00 0.00 43.12 3.85
4836 5391 2.238646 TCTAAGTTGGATGCCCATTCGT 59.761 45.455 0.00 0.00 43.12 3.85
4837 5392 2.917933 TCTAAGTTGGATGCCCATTCG 58.082 47.619 0.00 0.00 43.12 3.34
4838 5393 4.526970 TCTTCTAAGTTGGATGCCCATTC 58.473 43.478 0.00 0.00 43.12 2.67
4839 5394 4.591321 TCTTCTAAGTTGGATGCCCATT 57.409 40.909 0.00 0.00 43.12 3.16
4840 5395 4.530875 CTTCTTCTAAGTTGGATGCCCAT 58.469 43.478 0.00 0.00 43.12 4.00
4841 5396 3.873801 GCTTCTTCTAAGTTGGATGCCCA 60.874 47.826 0.00 0.00 41.64 5.36
4842 5397 2.685388 GCTTCTTCTAAGTTGGATGCCC 59.315 50.000 0.00 0.00 0.00 5.36
4843 5398 2.685388 GGCTTCTTCTAAGTTGGATGCC 59.315 50.000 0.00 0.00 40.16 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.