Multiple sequence alignment - TraesCS5D01G218700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G218700 chr5D 100.000 4160 0 0 1 4160 327634935 327630776 0.000000e+00 7683.0
1 TraesCS5D01G218700 chr5B 92.420 2269 95 36 1699 3905 381043790 381041537 0.000000e+00 3166.0
2 TraesCS5D01G218700 chr5B 92.418 1187 60 16 493 1670 381044952 381043787 0.000000e+00 1666.0
3 TraesCS5D01G218700 chr5B 86.937 222 25 4 3936 4157 491579048 491579265 3.210000e-61 246.0
4 TraesCS5D01G218700 chr5B 78.133 407 44 26 4 382 381050122 381049733 2.520000e-52 217.0
5 TraesCS5D01G218700 chr5A 90.244 2255 155 33 1684 3905 428995642 428997864 0.000000e+00 2885.0
6 TraesCS5D01G218700 chr5A 81.420 1028 104 45 574 1547 428994383 428995377 0.000000e+00 760.0
7 TraesCS5D01G218700 chr5A 84.186 215 19 7 1 208 428992544 428992750 1.180000e-45 195.0
8 TraesCS5D01G218700 chr3D 97.817 229 3 1 3932 4160 250055920 250056146 1.080000e-105 394.0
9 TraesCS5D01G218700 chr3D 96.943 229 5 1 3932 4160 30171126 30170900 2.350000e-102 383.0
10 TraesCS5D01G218700 chr3D 98.204 167 1 1 3982 4148 51046450 51046286 1.460000e-74 291.0
11 TraesCS5D01G218700 chr2D 98.086 209 2 1 3932 4140 184129171 184129377 3.060000e-96 363.0
12 TraesCS5D01G218700 chr2D 97.561 164 2 1 3988 4151 23499172 23499011 3.170000e-71 279.0
13 TraesCS5D01G218700 chr2D 100.000 49 0 0 3943 3991 23511236 23511188 1.590000e-14 91.6
14 TraesCS5D01G218700 chr7D 96.330 218 6 1 3943 4160 622388809 622388594 1.420000e-94 357.0
15 TraesCS5D01G218700 chr6D 95.872 218 6 2 3943 4160 89212918 89212704 2.380000e-92 350.0
16 TraesCS5D01G218700 chr2A 89.952 209 17 3 3949 4157 612603791 612603995 2.470000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G218700 chr5D 327630776 327634935 4159 True 7683 7683 100.000000 1 4160 1 chr5D.!!$R1 4159
1 TraesCS5D01G218700 chr5B 381041537 381044952 3415 True 2416 3166 92.419000 493 3905 2 chr5B.!!$R2 3412
2 TraesCS5D01G218700 chr5A 428992544 428997864 5320 False 1280 2885 85.283333 1 3905 3 chr5A.!!$F1 3904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 257 0.093705 GACTGAAATGCACGCGAGAC 59.906 55.0 15.93 1.18 0.00 3.36 F
405 438 0.101040 CATGGTGCATTTACGCTGGG 59.899 55.0 0.00 0.00 0.00 4.45 F
1441 2834 0.108186 TCACCTGCATCGGTTAGCTG 60.108 55.0 0.00 0.00 34.29 4.24 F
1485 2880 1.115467 TGCTCGCCCCAAAAGAAAAA 58.885 45.0 0.00 0.00 0.00 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 2823 0.249489 GATGACCGCAGCTAACCGAT 60.249 55.0 2.59 0.00 0.00 4.18 R
1502 2897 0.471022 GGGGGAGGGACAAGCAAAAA 60.471 55.0 0.00 0.00 0.00 1.94 R
2960 4556 0.379669 GTGCATCCTCAAGGCATTCG 59.620 55.0 0.00 0.00 40.05 3.34 R
3176 4772 1.171308 CACCTGGCCTCAATGAACAG 58.829 55.0 3.32 3.27 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.664166 CAAATTGCAGGGCGTGTGAC 60.664 55.000 9.16 0.00 0.00 3.67
33 34 3.792401 CAGGGCGTGTGACTTTATATCA 58.208 45.455 0.00 0.00 0.00 2.15
35 36 4.634004 CAGGGCGTGTGACTTTATATCAAA 59.366 41.667 0.00 0.00 0.00 2.69
36 37 4.634443 AGGGCGTGTGACTTTATATCAAAC 59.366 41.667 0.00 0.00 31.87 2.93
47 48 8.245491 TGACTTTATATCAAACTGCAGTACGTA 58.755 33.333 22.01 11.29 0.00 3.57
51 52 3.945981 TCAAACTGCAGTACGTATGGA 57.054 42.857 22.01 3.84 0.00 3.41
52 53 3.581755 TCAAACTGCAGTACGTATGGAC 58.418 45.455 22.01 0.00 0.00 4.02
77 78 8.195436 ACGTATGGTTCTATATAAATGGGATCG 58.805 37.037 0.00 0.00 0.00 3.69
101 102 2.177734 TGGATGCTGGCTAAATTTGCA 58.822 42.857 0.00 1.53 38.05 4.08
102 103 2.566279 TGGATGCTGGCTAAATTTGCAA 59.434 40.909 0.00 0.00 37.20 4.08
105 106 2.348660 TGCTGGCTAAATTTGCAATGC 58.651 42.857 0.00 0.00 0.00 3.56
131 135 2.259618 CAAGCTGCAGCATGATCAAAC 58.740 47.619 38.24 7.01 41.77 2.93
138 142 2.449464 CAGCATGATCAAACCTTGGGA 58.551 47.619 0.00 0.00 39.69 4.37
141 145 3.512724 AGCATGATCAAACCTTGGGAAAG 59.487 43.478 0.00 0.00 0.00 2.62
149 157 1.518367 ACCTTGGGAAAGTCCAGACA 58.482 50.000 0.00 0.00 38.64 3.41
161 169 2.279120 CAGACAGCGGGATCGAGC 60.279 66.667 0.00 0.00 39.00 5.03
165 173 0.664767 GACAGCGGGATCGAGCATAC 60.665 60.000 1.84 0.00 39.00 2.39
208 216 1.030457 AGAGGTTACCATCTACGGCG 58.970 55.000 4.80 4.80 0.00 6.46
209 217 1.027357 GAGGTTACCATCTACGGCGA 58.973 55.000 16.62 0.00 0.00 5.54
210 218 1.406539 GAGGTTACCATCTACGGCGAA 59.593 52.381 16.62 0.00 0.00 4.70
211 219 1.135721 AGGTTACCATCTACGGCGAAC 59.864 52.381 16.62 4.39 0.00 3.95
212 220 1.564207 GTTACCATCTACGGCGAACC 58.436 55.000 16.62 0.00 0.00 3.62
213 221 1.135024 GTTACCATCTACGGCGAACCA 60.135 52.381 16.62 0.00 34.57 3.67
214 222 1.405872 TACCATCTACGGCGAACCAT 58.594 50.000 16.62 0.00 34.57 3.55
215 223 0.104304 ACCATCTACGGCGAACCATC 59.896 55.000 16.62 0.00 34.57 3.51
226 234 2.060326 CGAACCATCGGCGTATATGT 57.940 50.000 6.85 0.00 45.32 2.29
227 235 2.400399 CGAACCATCGGCGTATATGTT 58.600 47.619 6.85 4.81 45.32 2.71
228 236 2.154963 CGAACCATCGGCGTATATGTTG 59.845 50.000 6.85 0.00 45.32 3.33
229 237 2.163818 ACCATCGGCGTATATGTTGG 57.836 50.000 6.85 6.59 0.00 3.77
230 238 1.270625 ACCATCGGCGTATATGTTGGG 60.271 52.381 6.85 0.00 0.00 4.12
231 239 1.001520 CCATCGGCGTATATGTTGGGA 59.998 52.381 6.85 0.00 0.00 4.37
232 240 2.066262 CATCGGCGTATATGTTGGGAC 58.934 52.381 6.85 0.00 0.00 4.46
233 241 1.405872 TCGGCGTATATGTTGGGACT 58.594 50.000 6.85 0.00 0.00 3.85
234 242 1.067974 TCGGCGTATATGTTGGGACTG 59.932 52.381 6.85 0.00 0.00 3.51
235 243 1.067974 CGGCGTATATGTTGGGACTGA 59.932 52.381 0.00 0.00 0.00 3.41
236 244 2.482316 CGGCGTATATGTTGGGACTGAA 60.482 50.000 0.00 0.00 0.00 3.02
237 245 3.537580 GGCGTATATGTTGGGACTGAAA 58.462 45.455 0.00 0.00 0.00 2.69
238 246 4.134563 GGCGTATATGTTGGGACTGAAAT 58.865 43.478 0.00 0.00 0.00 2.17
239 247 4.024048 GGCGTATATGTTGGGACTGAAATG 60.024 45.833 0.00 0.00 0.00 2.32
240 248 4.554723 GCGTATATGTTGGGACTGAAATGC 60.555 45.833 0.00 0.00 0.00 3.56
241 249 4.574421 CGTATATGTTGGGACTGAAATGCA 59.426 41.667 0.00 0.00 0.00 3.96
242 250 4.989279 ATATGTTGGGACTGAAATGCAC 57.011 40.909 0.00 0.00 0.00 4.57
243 251 0.950836 TGTTGGGACTGAAATGCACG 59.049 50.000 0.00 0.00 0.00 5.34
244 252 0.387239 GTTGGGACTGAAATGCACGC 60.387 55.000 0.00 0.00 0.00 5.34
245 253 1.851021 TTGGGACTGAAATGCACGCG 61.851 55.000 3.53 3.53 0.00 6.01
246 254 2.032634 GGGACTGAAATGCACGCGA 61.033 57.895 15.93 0.00 0.00 5.87
247 255 1.421485 GGACTGAAATGCACGCGAG 59.579 57.895 15.93 5.97 0.00 5.03
248 256 1.014044 GGACTGAAATGCACGCGAGA 61.014 55.000 15.93 0.00 0.00 4.04
249 257 0.093705 GACTGAAATGCACGCGAGAC 59.906 55.000 15.93 1.18 0.00 3.36
250 258 1.291877 ACTGAAATGCACGCGAGACC 61.292 55.000 15.93 0.00 0.00 3.85
251 259 2.283780 CTGAAATGCACGCGAGACCG 62.284 60.000 15.93 0.00 39.16 4.79
252 260 3.083600 GAAATGCACGCGAGACCGG 62.084 63.158 15.93 0.00 36.06 5.28
260 268 2.431942 GCGAGACCGGCGAGAAAA 60.432 61.111 9.30 0.00 36.06 2.29
261 269 2.727684 GCGAGACCGGCGAGAAAAC 61.728 63.158 9.30 0.00 36.06 2.43
262 270 1.372499 CGAGACCGGCGAGAAAACA 60.372 57.895 9.30 0.00 0.00 2.83
263 271 1.615107 CGAGACCGGCGAGAAAACAC 61.615 60.000 9.30 0.00 0.00 3.32
264 272 1.289800 GAGACCGGCGAGAAAACACC 61.290 60.000 9.30 0.00 0.00 4.16
265 273 1.595929 GACCGGCGAGAAAACACCA 60.596 57.895 9.30 0.00 0.00 4.17
266 274 1.566018 GACCGGCGAGAAAACACCAG 61.566 60.000 9.30 0.00 0.00 4.00
267 275 1.301401 CCGGCGAGAAAACACCAGA 60.301 57.895 9.30 0.00 0.00 3.86
268 276 0.673644 CCGGCGAGAAAACACCAGAT 60.674 55.000 9.30 0.00 0.00 2.90
269 277 0.721718 CGGCGAGAAAACACCAGATC 59.278 55.000 0.00 0.00 0.00 2.75
275 283 4.451096 GCGAGAAAACACCAGATCTTACAA 59.549 41.667 0.00 0.00 0.00 2.41
282 290 0.810031 CCAGATCTTACAACGCCGGG 60.810 60.000 2.18 0.00 0.00 5.73
283 291 0.810031 CAGATCTTACAACGCCGGGG 60.810 60.000 18.33 18.33 0.00 5.73
284 292 1.523032 GATCTTACAACGCCGGGGG 60.523 63.158 23.83 9.88 0.00 5.40
285 293 2.248086 GATCTTACAACGCCGGGGGT 62.248 60.000 23.83 14.75 0.00 4.95
287 295 4.332591 TTACAACGCCGGGGGTGG 62.333 66.667 36.31 20.46 37.55 4.61
292 300 3.988050 AACGCCGGGGGTGGAGATA 62.988 63.158 23.83 0.00 37.55 1.98
293 301 3.158648 CGCCGGGGGTGGAGATAA 61.159 66.667 11.42 0.00 0.00 1.75
294 302 2.516888 CGCCGGGGGTGGAGATAAT 61.517 63.158 11.42 0.00 0.00 1.28
295 303 1.189524 CGCCGGGGGTGGAGATAATA 61.190 60.000 11.42 0.00 0.00 0.98
296 304 1.286248 GCCGGGGGTGGAGATAATAT 58.714 55.000 2.18 0.00 0.00 1.28
299 307 3.721021 CCGGGGGTGGAGATAATATAGT 58.279 50.000 0.00 0.00 0.00 2.12
300 308 4.875389 CCGGGGGTGGAGATAATATAGTA 58.125 47.826 0.00 0.00 0.00 1.82
301 309 4.894114 CCGGGGGTGGAGATAATATAGTAG 59.106 50.000 0.00 0.00 0.00 2.57
303 311 5.593502 CGGGGGTGGAGATAATATAGTAGTC 59.406 48.000 0.00 0.00 0.00 2.59
307 315 7.070074 GGGGTGGAGATAATATAGTAGTCATGG 59.930 44.444 0.00 0.00 0.00 3.66
308 316 7.620094 GGGTGGAGATAATATAGTAGTCATGGT 59.380 40.741 0.00 0.00 0.00 3.55
320 328 4.772624 AGTAGTCATGGTACTTGAAGCTGA 59.227 41.667 0.00 0.00 0.00 4.26
322 330 5.171339 AGTCATGGTACTTGAAGCTGAAT 57.829 39.130 0.00 0.00 0.00 2.57
323 331 6.299805 AGTCATGGTACTTGAAGCTGAATA 57.700 37.500 0.00 0.00 0.00 1.75
324 332 6.344500 AGTCATGGTACTTGAAGCTGAATAG 58.656 40.000 0.00 0.00 0.00 1.73
325 333 6.070538 AGTCATGGTACTTGAAGCTGAATAGT 60.071 38.462 0.00 0.00 0.00 2.12
326 334 7.124298 AGTCATGGTACTTGAAGCTGAATAGTA 59.876 37.037 0.00 0.00 0.00 1.82
327 335 7.764443 GTCATGGTACTTGAAGCTGAATAGTAA 59.236 37.037 0.00 0.00 0.00 2.24
328 336 7.764443 TCATGGTACTTGAAGCTGAATAGTAAC 59.236 37.037 0.00 0.00 31.32 2.50
339 347 9.902196 GAAGCTGAATAGTAACTAGATAGAACC 57.098 37.037 0.00 0.00 0.00 3.62
342 350 8.630917 GCTGAATAGTAACTAGATAGAACCACA 58.369 37.037 0.00 0.00 0.00 4.17
349 357 6.360370 AACTAGATAGAACCACACACATGT 57.640 37.500 0.00 0.00 40.80 3.21
363 371 5.017490 ACACACATGTTAGCTCTAGGTACT 58.983 41.667 0.00 0.00 38.18 2.73
364 372 5.480772 ACACACATGTTAGCTCTAGGTACTT 59.519 40.000 0.00 0.00 35.90 2.24
365 373 6.662234 ACACACATGTTAGCTCTAGGTACTTA 59.338 38.462 0.00 0.00 35.90 2.24
372 380 8.998277 TGTTAGCTCTAGGTACTTAGATTCAT 57.002 34.615 14.47 4.88 41.75 2.57
380 388 8.162085 TCTAGGTACTTAGATTCATACGGTCAT 58.838 37.037 10.48 0.00 41.75 3.06
383 391 8.162085 AGGTACTTAGATTCATACGGTCATAGA 58.838 37.037 0.00 0.00 27.25 1.98
384 392 8.452534 GGTACTTAGATTCATACGGTCATAGAG 58.547 40.741 0.00 0.00 0.00 2.43
387 395 7.720074 ACTTAGATTCATACGGTCATAGAGTCA 59.280 37.037 0.00 0.00 0.00 3.41
390 398 5.453567 TTCATACGGTCATAGAGTCATGG 57.546 43.478 0.00 0.00 0.00 3.66
392 400 4.278419 TCATACGGTCATAGAGTCATGGTG 59.722 45.833 0.00 0.00 0.00 4.17
393 401 1.137086 ACGGTCATAGAGTCATGGTGC 59.863 52.381 0.00 0.00 0.00 5.01
394 402 1.136891 CGGTCATAGAGTCATGGTGCA 59.863 52.381 0.00 0.00 0.00 4.57
404 437 1.093972 TCATGGTGCATTTACGCTGG 58.906 50.000 0.00 0.00 0.00 4.85
405 438 0.101040 CATGGTGCATTTACGCTGGG 59.899 55.000 0.00 0.00 0.00 4.45
428 461 3.741344 CCGGTGACAGTCTTCAAGTTTAG 59.259 47.826 1.31 0.00 0.00 1.85
432 1749 5.234543 GGTGACAGTCTTCAAGTTTAGACAC 59.765 44.000 14.30 0.00 42.51 3.67
436 1753 4.811024 CAGTCTTCAAGTTTAGACACTGCA 59.189 41.667 14.30 0.00 42.51 4.41
444 1761 6.257849 TCAAGTTTAGACACTGCACTTAGTTG 59.742 38.462 0.00 0.00 0.00 3.16
449 1766 1.134098 ACACTGCACTTAGTTGGCACT 60.134 47.619 0.00 0.00 36.99 4.40
452 1769 2.618709 ACTGCACTTAGTTGGCACTTTC 59.381 45.455 0.00 0.00 34.06 2.62
455 1772 3.699038 TGCACTTAGTTGGCACTTTCTTT 59.301 39.130 0.00 0.00 34.06 2.52
456 1773 4.159506 TGCACTTAGTTGGCACTTTCTTTT 59.840 37.500 0.00 0.00 34.06 2.27
457 1774 5.358442 TGCACTTAGTTGGCACTTTCTTTTA 59.642 36.000 0.00 0.00 34.06 1.52
480 1797 4.219264 ACGAGAGTACAGTTAGGCTAGT 57.781 45.455 0.00 0.00 46.88 2.57
482 1799 5.358922 ACGAGAGTACAGTTAGGCTAGTAG 58.641 45.833 0.00 0.00 46.88 2.57
483 1800 4.211794 CGAGAGTACAGTTAGGCTAGTAGC 59.788 50.000 14.09 14.09 41.46 3.58
484 1801 4.128643 AGAGTACAGTTAGGCTAGTAGCG 58.871 47.826 15.85 3.66 43.62 4.26
485 1802 3.876320 GAGTACAGTTAGGCTAGTAGCGT 59.124 47.826 20.27 20.27 43.62 5.07
486 1803 3.626670 AGTACAGTTAGGCTAGTAGCGTG 59.373 47.826 24.11 14.15 43.62 5.34
487 1804 1.749634 ACAGTTAGGCTAGTAGCGTGG 59.250 52.381 24.11 14.16 43.62 4.94
490 1807 0.757935 TTAGGCTAGTAGCGTGGGGG 60.758 60.000 24.11 0.00 43.62 5.40
491 1808 4.237207 GGCTAGTAGCGTGGGGGC 62.237 72.222 15.85 0.00 43.62 5.80
506 1851 1.017387 GGGGCACAGATCATTTCGAC 58.983 55.000 0.00 0.00 0.00 4.20
518 1863 8.446273 ACAGATCATTTCGACTGTAAATTTCTG 58.554 33.333 15.72 15.72 40.96 3.02
519 1864 7.427606 CAGATCATTTCGACTGTAAATTTCTGC 59.572 37.037 0.00 0.00 32.69 4.26
524 1869 2.348666 CGACTGTAAATTTCTGCGGAGG 59.651 50.000 3.37 0.00 0.00 4.30
525 1870 2.084546 ACTGTAAATTTCTGCGGAGGC 58.915 47.619 3.37 0.00 40.52 4.70
542 1887 1.073216 GGCATATCGATCGACCAGCG 61.073 60.000 22.06 8.61 42.69 5.18
566 1911 2.437413 ACGGGGAAGATTTTCTTGAGC 58.563 47.619 0.00 0.00 36.73 4.26
571 1916 4.265073 GGGAAGATTTTCTTGAGCTGCTA 58.735 43.478 0.15 0.00 36.73 3.49
587 1932 1.134037 TGCTAAAAACCCACGTCTGGT 60.134 47.619 0.35 0.35 35.46 4.00
618 1963 1.688735 CACCTCATAATGCTCCTCCGA 59.311 52.381 0.00 0.00 0.00 4.55
622 1970 3.812053 CCTCATAATGCTCCTCCGAAAAG 59.188 47.826 0.00 0.00 0.00 2.27
625 1973 0.991920 AATGCTCCTCCGAAAAGGGA 59.008 50.000 0.00 0.00 41.52 4.20
639 1987 5.156355 CGAAAAGGGAAATGTCAACATCTG 58.844 41.667 0.00 0.00 35.10 2.90
675 2023 2.286872 CAGGAAGTGACATGCCAGATC 58.713 52.381 0.00 0.00 0.00 2.75
687 2035 3.286329 TGCCAGATCAAGCATGTATGT 57.714 42.857 5.64 0.00 33.08 2.29
688 2036 4.420522 TGCCAGATCAAGCATGTATGTA 57.579 40.909 5.64 0.00 33.08 2.29
689 2037 4.976864 TGCCAGATCAAGCATGTATGTAT 58.023 39.130 5.64 0.00 33.08 2.29
690 2038 6.112927 TGCCAGATCAAGCATGTATGTATA 57.887 37.500 5.64 0.00 33.08 1.47
691 2039 6.168389 TGCCAGATCAAGCATGTATGTATAG 58.832 40.000 5.64 0.00 33.08 1.31
692 2040 5.064452 GCCAGATCAAGCATGTATGTATAGC 59.936 44.000 0.00 0.00 0.00 2.97
693 2041 6.404708 CCAGATCAAGCATGTATGTATAGCT 58.595 40.000 0.00 0.00 37.08 3.32
694 2042 7.550712 CCAGATCAAGCATGTATGTATAGCTA 58.449 38.462 0.00 0.00 34.66 3.32
695 2043 7.705752 CCAGATCAAGCATGTATGTATAGCTAG 59.294 40.741 0.00 0.00 34.66 3.42
696 2044 7.222417 CAGATCAAGCATGTATGTATAGCTAGC 59.778 40.741 6.62 6.62 34.66 3.42
697 2045 6.345096 TCAAGCATGTATGTATAGCTAGCA 57.655 37.500 18.83 3.19 34.66 3.49
698 2046 6.159293 TCAAGCATGTATGTATAGCTAGCAC 58.841 40.000 18.83 7.14 34.66 4.40
744 2092 1.251251 CAAAGCCTTGGGACTTGAGG 58.749 55.000 0.00 0.00 0.00 3.86
746 2094 2.747855 GCCTTGGGACTTGAGGCG 60.748 66.667 0.00 0.00 45.64 5.52
777 2135 0.253044 TCGCTCCAATAAGCAAGCCT 59.747 50.000 0.00 0.00 42.62 4.58
839 2197 2.817423 CGCTTCTTCCATCGCCAGC 61.817 63.158 0.00 0.00 0.00 4.85
893 2251 1.817740 GCCTCTCGCCTACATCTCTCT 60.818 57.143 0.00 0.00 0.00 3.10
894 2252 2.151202 CCTCTCGCCTACATCTCTCTC 58.849 57.143 0.00 0.00 0.00 3.20
903 2261 1.388547 ACATCTCTCTCGCACTCTCC 58.611 55.000 0.00 0.00 0.00 3.71
922 2280 1.358402 CTCGGTCATCAGCTCCTCG 59.642 63.158 0.00 0.00 0.00 4.63
976 2334 4.821589 CTTCGCCGCTCACTCCCC 62.822 72.222 0.00 0.00 0.00 4.81
1056 2420 6.693315 TGGTATCTTTATTTTGCAGTAGGC 57.307 37.500 0.00 0.00 45.13 3.93
1140 2520 0.748005 GGCGCCATGGTAATGTGACT 60.748 55.000 24.80 0.00 31.27 3.41
1151 2536 5.790593 TGGTAATGTGACTAACCTCTGTTC 58.209 41.667 3.88 0.00 35.87 3.18
1300 2692 6.380095 AAGTACTGTGTGCTATAGACTAGC 57.620 41.667 3.21 0.00 40.76 3.42
1309 2701 2.094957 GCTATAGACTAGCCCAGAAGCG 60.095 54.545 3.21 0.00 38.01 4.68
1361 2753 6.563422 TGAAAACATGAGGAAAAAGACAGTG 58.437 36.000 0.00 0.00 0.00 3.66
1381 2773 6.096001 ACAGTGATCTTTGTTCTCTGCTTTTT 59.904 34.615 0.00 0.00 37.94 1.94
1384 2776 6.858478 GTGATCTTTGTTCTCTGCTTTTTACC 59.142 38.462 0.00 0.00 0.00 2.85
1399 2791 7.797062 TGCTTTTTACCCCTTGAAAAATAGTT 58.203 30.769 0.00 0.00 34.83 2.24
1401 2793 9.419297 GCTTTTTACCCCTTGAAAAATAGTTAG 57.581 33.333 0.00 0.00 34.83 2.34
1430 2823 0.884704 GCTCCGAAGTTTCACCTGCA 60.885 55.000 0.00 0.00 0.00 4.41
1441 2834 0.108186 TCACCTGCATCGGTTAGCTG 60.108 55.000 0.00 0.00 34.29 4.24
1456 2849 1.609208 AGCTGCGGTCATCAAAGTTT 58.391 45.000 0.00 0.00 0.00 2.66
1480 2875 2.086251 TTGCTTGCTCGCCCCAAAAG 62.086 55.000 0.00 0.00 0.00 2.27
1485 2880 1.115467 TGCTCGCCCCAAAAGAAAAA 58.885 45.000 0.00 0.00 0.00 1.94
1580 2997 1.334160 TTCTGCACTCCGTTGGTCTA 58.666 50.000 0.00 0.00 0.00 2.59
1668 3186 3.744660 AGTGACATTCCCTGACTTGTTC 58.255 45.455 0.00 0.00 0.00 3.18
1679 3197 4.511826 CCCTGACTTGTTCTACTGTTTGTC 59.488 45.833 0.00 0.00 0.00 3.18
1682 3200 6.238211 CCTGACTTGTTCTACTGTTTGTCTTG 60.238 42.308 0.00 0.00 0.00 3.02
1721 3250 8.221251 GGTTTCTCCATTCTTTTCTATCCCTAT 58.779 37.037 0.00 0.00 35.97 2.57
1741 3270 5.130145 CCTATCTCTGTTTCATGGTCTCCTT 59.870 44.000 0.00 0.00 0.00 3.36
1746 3282 3.496331 TGTTTCATGGTCTCCTTTTCCC 58.504 45.455 0.00 0.00 0.00 3.97
1768 3304 2.540515 ACAACTAGTCGGCATGAATCG 58.459 47.619 0.00 0.00 0.00 3.34
1792 3328 5.948992 AGTCTCAACTAATGGAAGCAAAC 57.051 39.130 0.00 0.00 32.59 2.93
1794 3330 5.471456 AGTCTCAACTAATGGAAGCAAACAG 59.529 40.000 0.00 0.00 32.59 3.16
1796 3332 6.150140 GTCTCAACTAATGGAAGCAAACAGAT 59.850 38.462 0.00 0.00 0.00 2.90
1890 3454 1.298014 CCCAACTCTCAGCCTGTCC 59.702 63.158 0.00 0.00 0.00 4.02
1951 3517 5.170748 CCTTGGATGGTTTTGTTCTATTGC 58.829 41.667 0.00 0.00 0.00 3.56
1952 3518 5.047092 CCTTGGATGGTTTTGTTCTATTGCT 60.047 40.000 0.00 0.00 0.00 3.91
1953 3519 5.643379 TGGATGGTTTTGTTCTATTGCTC 57.357 39.130 0.00 0.00 0.00 4.26
1954 3520 5.324409 TGGATGGTTTTGTTCTATTGCTCT 58.676 37.500 0.00 0.00 0.00 4.09
1955 3521 5.183713 TGGATGGTTTTGTTCTATTGCTCTG 59.816 40.000 0.00 0.00 0.00 3.35
1956 3522 5.415701 GGATGGTTTTGTTCTATTGCTCTGA 59.584 40.000 0.00 0.00 0.00 3.27
1957 3523 6.071952 GGATGGTTTTGTTCTATTGCTCTGAA 60.072 38.462 0.00 0.00 0.00 3.02
1958 3524 6.072112 TGGTTTTGTTCTATTGCTCTGAAC 57.928 37.500 0.00 0.00 40.09 3.18
1985 3551 7.009179 TGAAGTCAAGTAATCCTGTCTGAAT 57.991 36.000 0.00 0.00 0.00 2.57
1988 3554 9.606631 GAAGTCAAGTAATCCTGTCTGAATATT 57.393 33.333 0.00 0.00 0.00 1.28
1989 3555 8.954950 AGTCAAGTAATCCTGTCTGAATATTG 57.045 34.615 0.00 0.00 0.00 1.90
1990 3556 7.989741 AGTCAAGTAATCCTGTCTGAATATTGG 59.010 37.037 0.00 0.00 0.00 3.16
1991 3557 7.770897 GTCAAGTAATCCTGTCTGAATATTGGT 59.229 37.037 0.00 0.00 0.00 3.67
1999 3565 7.861629 TCCTGTCTGAATATTGGTATTCTGTT 58.138 34.615 0.00 0.00 44.24 3.16
2002 3568 8.196802 TGTCTGAATATTGGTATTCTGTTTCG 57.803 34.615 0.00 0.00 44.24 3.46
2007 3573 8.879759 TGAATATTGGTATTCTGTTTCGAGAAC 58.120 33.333 0.00 4.24 44.24 3.01
2013 3579 6.811665 TGGTATTCTGTTTCGAGAACACATAG 59.188 38.462 8.47 2.00 32.02 2.23
2018 3586 6.745116 TCTGTTTCGAGAACACATAGAAAGA 58.255 36.000 8.47 1.95 32.39 2.52
2112 3698 5.677319 AACGGAAAGAGAACATCAGGATA 57.323 39.130 0.00 0.00 0.00 2.59
2160 3755 5.288015 CAGTGATAAGCTGATGAGAACGAT 58.712 41.667 0.00 0.00 36.12 3.73
2177 3772 7.014808 TGAGAACGATTGGGGTTTAAGAATTTT 59.985 33.333 0.00 0.00 0.00 1.82
2178 3773 8.411991 AGAACGATTGGGGTTTAAGAATTTTA 57.588 30.769 0.00 0.00 0.00 1.52
2218 3813 2.357952 GTCCGGACATCCAATTTAAGCC 59.642 50.000 29.75 0.00 35.14 4.35
2600 4195 2.959484 GCACAGGGACCAGCTGCTA 61.959 63.158 8.66 0.00 0.00 3.49
2777 4372 6.633500 TCAAGAATGGAAAAGGTACACTTG 57.367 37.500 0.00 0.00 39.96 3.16
2790 4385 8.630054 AAAGGTACACTTGCATTCTTATGTAA 57.370 30.769 0.00 0.00 39.96 2.41
2833 4428 8.330247 ACCTTCTTGACTCTTGAGTAGTATCTA 58.670 37.037 3.00 0.00 0.00 1.98
2906 4502 7.601856 AGAAAATACATCCGCAAAATTCTTCA 58.398 30.769 0.00 0.00 0.00 3.02
2930 4526 3.562973 CGCTCGTACCTAGGAGACATTTA 59.437 47.826 17.98 0.00 39.80 1.40
2960 4556 2.208431 CCGGATGAGCAAGAGATCAAC 58.792 52.381 0.00 0.00 44.32 3.18
3053 4649 5.815581 TGTAAGTTGCATACTTTGATCCCT 58.184 37.500 16.02 0.00 44.73 4.20
3100 4696 8.043113 ACTGAACATCTCTTTATGCACTGATTA 58.957 33.333 0.00 0.00 0.00 1.75
3111 4707 9.334693 CTTTATGCACTGATTACTTTGAAGAAC 57.665 33.333 0.00 0.00 0.00 3.01
3176 4772 8.686334 AGAAATGTAAACATGGGTGAATACATC 58.314 33.333 0.00 0.00 38.46 3.06
3246 4846 6.352016 TCAGGAGAACTCATGGCTAATATC 57.648 41.667 14.78 0.00 41.27 1.63
3284 4884 3.565063 GGGTTGTGCTTGCAATTTGATTT 59.435 39.130 0.00 0.00 0.00 2.17
3329 4929 0.548031 CTTGGCAAGCTAGGGATCCA 59.452 55.000 15.25 0.00 0.00 3.41
3611 5216 9.773328 AATGATGATACAGTTGTTGTTTTATCG 57.227 29.630 0.00 0.00 41.29 2.92
3717 5322 9.393512 CTCTTTGATCTGTAGGATTTGAAGAAT 57.606 33.333 0.00 0.00 34.33 2.40
3721 5326 9.958180 TTGATCTGTAGGATTTGAAGAATACAA 57.042 29.630 0.00 0.00 34.33 2.41
3839 5446 2.646250 GAACGTTCCATGTTGAAACCG 58.354 47.619 17.68 0.00 0.00 4.44
3898 5505 9.275398 ACGTTGAAACCATCTATGTTAAACTTA 57.725 29.630 0.00 0.00 30.22 2.24
3906 5513 9.715121 ACCATCTATGTTAAACTTAAACTTCGA 57.285 29.630 0.00 0.00 0.00 3.71
3910 5517 9.374838 TCTATGTTAAACTTAAACTTCGATCCC 57.625 33.333 0.00 0.00 0.00 3.85
3911 5518 7.989416 ATGTTAAACTTAAACTTCGATCCCA 57.011 32.000 0.00 0.00 0.00 4.37
3912 5519 7.804843 TGTTAAACTTAAACTTCGATCCCAA 57.195 32.000 0.00 0.00 0.00 4.12
3913 5520 8.223177 TGTTAAACTTAAACTTCGATCCCAAA 57.777 30.769 0.00 0.00 0.00 3.28
3914 5521 8.130469 TGTTAAACTTAAACTTCGATCCCAAAC 58.870 33.333 0.00 0.00 0.00 2.93
3915 5522 6.702716 AAACTTAAACTTCGATCCCAAACA 57.297 33.333 0.00 0.00 0.00 2.83
3916 5523 6.702716 AACTTAAACTTCGATCCCAAACAA 57.297 33.333 0.00 0.00 0.00 2.83
3917 5524 6.894339 ACTTAAACTTCGATCCCAAACAAT 57.106 33.333 0.00 0.00 0.00 2.71
3918 5525 6.909909 ACTTAAACTTCGATCCCAAACAATC 58.090 36.000 0.00 0.00 0.00 2.67
3919 5526 4.783764 AAACTTCGATCCCAAACAATCC 57.216 40.909 0.00 0.00 0.00 3.01
3920 5527 3.433306 ACTTCGATCCCAAACAATCCA 57.567 42.857 0.00 0.00 0.00 3.41
3921 5528 3.081804 ACTTCGATCCCAAACAATCCAC 58.918 45.455 0.00 0.00 0.00 4.02
3922 5529 2.869101 TCGATCCCAAACAATCCACA 57.131 45.000 0.00 0.00 0.00 4.17
3923 5530 3.147553 TCGATCCCAAACAATCCACAA 57.852 42.857 0.00 0.00 0.00 3.33
3924 5531 2.817258 TCGATCCCAAACAATCCACAAC 59.183 45.455 0.00 0.00 0.00 3.32
3925 5532 2.819608 CGATCCCAAACAATCCACAACT 59.180 45.455 0.00 0.00 0.00 3.16
3926 5533 3.119849 CGATCCCAAACAATCCACAACTC 60.120 47.826 0.00 0.00 0.00 3.01
3927 5534 2.226330 TCCCAAACAATCCACAACTCG 58.774 47.619 0.00 0.00 0.00 4.18
3928 5535 2.158740 TCCCAAACAATCCACAACTCGA 60.159 45.455 0.00 0.00 0.00 4.04
3929 5536 2.031157 CCCAAACAATCCACAACTCGAC 60.031 50.000 0.00 0.00 0.00 4.20
3930 5537 2.616376 CCAAACAATCCACAACTCGACA 59.384 45.455 0.00 0.00 0.00 4.35
3931 5538 3.548014 CCAAACAATCCACAACTCGACAC 60.548 47.826 0.00 0.00 0.00 3.67
3932 5539 1.878953 ACAATCCACAACTCGACACC 58.121 50.000 0.00 0.00 0.00 4.16
3933 5540 1.156736 CAATCCACAACTCGACACCC 58.843 55.000 0.00 0.00 0.00 4.61
3934 5541 0.036306 AATCCACAACTCGACACCCC 59.964 55.000 0.00 0.00 0.00 4.95
3935 5542 0.836400 ATCCACAACTCGACACCCCT 60.836 55.000 0.00 0.00 0.00 4.79
3936 5543 1.004918 CCACAACTCGACACCCCTC 60.005 63.158 0.00 0.00 0.00 4.30
3937 5544 1.004918 CACAACTCGACACCCCTCC 60.005 63.158 0.00 0.00 0.00 4.30
3938 5545 1.152312 ACAACTCGACACCCCTCCT 60.152 57.895 0.00 0.00 0.00 3.69
3939 5546 1.186267 ACAACTCGACACCCCTCCTC 61.186 60.000 0.00 0.00 0.00 3.71
3940 5547 1.609794 AACTCGACACCCCTCCTCC 60.610 63.158 0.00 0.00 0.00 4.30
3941 5548 2.760385 CTCGACACCCCTCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
3942 5549 4.393778 TCGACACCCCTCCTCCCC 62.394 72.222 0.00 0.00 0.00 4.81
3943 5550 4.400251 CGACACCCCTCCTCCCCT 62.400 72.222 0.00 0.00 0.00 4.79
3944 5551 2.365768 GACACCCCTCCTCCCCTC 60.366 72.222 0.00 0.00 0.00 4.30
3945 5552 2.876858 ACACCCCTCCTCCCCTCT 60.877 66.667 0.00 0.00 0.00 3.69
3946 5553 2.041405 CACCCCTCCTCCCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
3947 5554 3.756783 ACCCCTCCTCCCCTCTCG 61.757 72.222 0.00 0.00 0.00 4.04
3950 5557 4.507916 CCTCCTCCCCTCTCGCGA 62.508 72.222 9.26 9.26 0.00 5.87
3951 5558 3.213402 CTCCTCCCCTCTCGCGAC 61.213 72.222 3.71 0.00 0.00 5.19
3952 5559 4.816984 TCCTCCCCTCTCGCGACC 62.817 72.222 3.71 0.00 0.00 4.79
3997 5604 4.717313 GTCCCCAACACCTCGCCC 62.717 72.222 0.00 0.00 0.00 6.13
4026 5633 3.711782 CCCCCTTCCCTCCCTCCT 61.712 72.222 0.00 0.00 0.00 3.69
4027 5634 2.461637 CCCCTTCCCTCCCTCCTT 59.538 66.667 0.00 0.00 0.00 3.36
4028 5635 2.003548 CCCCTTCCCTCCCTCCTTG 61.004 68.421 0.00 0.00 0.00 3.61
4029 5636 2.684499 CCCTTCCCTCCCTCCTTGC 61.684 68.421 0.00 0.00 0.00 4.01
4030 5637 2.684499 CCTTCCCTCCCTCCTTGCC 61.684 68.421 0.00 0.00 0.00 4.52
4031 5638 3.009115 TTCCCTCCCTCCTTGCCG 61.009 66.667 0.00 0.00 0.00 5.69
4102 5709 3.744155 CCCCTGGCCTTTCCCCTC 61.744 72.222 3.32 0.00 0.00 4.30
4103 5710 2.615288 CCCTGGCCTTTCCCCTCT 60.615 66.667 3.32 0.00 0.00 3.69
4104 5711 2.684499 CCCTGGCCTTTCCCCTCTC 61.684 68.421 3.32 0.00 0.00 3.20
4105 5712 2.586792 CTGGCCTTTCCCCTCTCG 59.413 66.667 3.32 0.00 0.00 4.04
4106 5713 3.009115 TGGCCTTTCCCCTCTCGG 61.009 66.667 3.32 0.00 0.00 4.63
4115 5722 4.135153 CCCTCTCGGGTCGCACTG 62.135 72.222 0.00 0.00 46.12 3.66
4116 5723 3.062466 CCTCTCGGGTCGCACTGA 61.062 66.667 0.00 0.00 0.00 3.41
4158 5765 4.874977 GTGCTCCTAGGCGGCGAC 62.875 72.222 12.98 8.50 34.52 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.022021 GCAGTTTGATATAAAGTCACACGC 58.978 41.667 0.00 0.00 32.89 5.34
24 25 8.487970 CCATACGTACTGCAGTTTGATATAAAG 58.512 37.037 27.06 9.00 0.00 1.85
33 34 2.602878 CGTCCATACGTACTGCAGTTT 58.397 47.619 27.06 12.42 44.21 2.66
47 48 8.265055 CCCATTTATATAGAACCATACGTCCAT 58.735 37.037 0.00 0.00 0.00 3.41
51 52 8.195436 CGATCCCATTTATATAGAACCATACGT 58.805 37.037 0.00 0.00 0.00 3.57
52 53 8.195436 ACGATCCCATTTATATAGAACCATACG 58.805 37.037 0.00 0.00 0.00 3.06
53 54 9.314321 CACGATCCCATTTATATAGAACCATAC 57.686 37.037 0.00 0.00 0.00 2.39
54 55 9.042450 ACACGATCCCATTTATATAGAACCATA 57.958 33.333 0.00 0.00 0.00 2.74
55 56 7.918076 ACACGATCCCATTTATATAGAACCAT 58.082 34.615 0.00 0.00 0.00 3.55
56 57 7.311092 ACACGATCCCATTTATATAGAACCA 57.689 36.000 0.00 0.00 0.00 3.67
57 58 7.119262 CCAACACGATCCCATTTATATAGAACC 59.881 40.741 0.00 0.00 0.00 3.62
58 59 7.876068 TCCAACACGATCCCATTTATATAGAAC 59.124 37.037 0.00 0.00 0.00 3.01
59 60 7.969004 TCCAACACGATCCCATTTATATAGAA 58.031 34.615 0.00 0.00 0.00 2.10
60 61 7.547697 TCCAACACGATCCCATTTATATAGA 57.452 36.000 0.00 0.00 0.00 1.98
61 62 7.201644 GCATCCAACACGATCCCATTTATATAG 60.202 40.741 0.00 0.00 0.00 1.31
64 65 4.759693 GCATCCAACACGATCCCATTTATA 59.240 41.667 0.00 0.00 0.00 0.98
70 71 0.392863 CAGCATCCAACACGATCCCA 60.393 55.000 0.00 0.00 0.00 4.37
72 73 1.718757 GCCAGCATCCAACACGATCC 61.719 60.000 0.00 0.00 0.00 3.36
77 78 3.874392 AATTTAGCCAGCATCCAACAC 57.126 42.857 0.00 0.00 0.00 3.32
115 119 2.416836 CCAAGGTTTGATCATGCTGCAG 60.417 50.000 10.11 10.11 0.00 4.41
120 124 3.259123 ACTTTCCCAAGGTTTGATCATGC 59.741 43.478 0.00 0.00 33.82 4.06
125 129 3.140144 TCTGGACTTTCCCAAGGTTTGAT 59.860 43.478 0.00 0.00 35.03 2.57
131 135 1.884067 GCTGTCTGGACTTTCCCAAGG 60.884 57.143 2.38 0.00 35.03 3.61
138 142 0.250513 GATCCCGCTGTCTGGACTTT 59.749 55.000 2.38 0.00 32.36 2.66
141 145 2.105128 CGATCCCGCTGTCTGGAC 59.895 66.667 0.00 0.00 32.36 4.02
149 157 0.882474 GTAGTATGCTCGATCCCGCT 59.118 55.000 0.00 0.00 35.37 5.52
208 216 2.478894 CCAACATATACGCCGATGGTTC 59.521 50.000 0.00 0.00 0.00 3.62
209 217 2.489971 CCAACATATACGCCGATGGTT 58.510 47.619 0.00 0.00 0.00 3.67
210 218 1.270625 CCCAACATATACGCCGATGGT 60.271 52.381 0.00 0.00 0.00 3.55
211 219 1.001520 TCCCAACATATACGCCGATGG 59.998 52.381 0.00 0.00 0.00 3.51
212 220 2.066262 GTCCCAACATATACGCCGATG 58.934 52.381 0.00 0.00 0.00 3.84
213 221 1.968493 AGTCCCAACATATACGCCGAT 59.032 47.619 0.00 0.00 0.00 4.18
214 222 1.067974 CAGTCCCAACATATACGCCGA 59.932 52.381 0.00 0.00 0.00 5.54
215 223 1.067974 TCAGTCCCAACATATACGCCG 59.932 52.381 0.00 0.00 0.00 6.46
216 224 2.902705 TCAGTCCCAACATATACGCC 57.097 50.000 0.00 0.00 0.00 5.68
218 226 4.574421 TGCATTTCAGTCCCAACATATACG 59.426 41.667 0.00 0.00 0.00 3.06
219 227 5.504010 CGTGCATTTCAGTCCCAACATATAC 60.504 44.000 0.00 0.00 0.00 1.47
220 228 4.574421 CGTGCATTTCAGTCCCAACATATA 59.426 41.667 0.00 0.00 0.00 0.86
221 229 3.378112 CGTGCATTTCAGTCCCAACATAT 59.622 43.478 0.00 0.00 0.00 1.78
222 230 2.746904 CGTGCATTTCAGTCCCAACATA 59.253 45.455 0.00 0.00 0.00 2.29
223 231 1.541147 CGTGCATTTCAGTCCCAACAT 59.459 47.619 0.00 0.00 0.00 2.71
224 232 0.950836 CGTGCATTTCAGTCCCAACA 59.049 50.000 0.00 0.00 0.00 3.33
225 233 0.387239 GCGTGCATTTCAGTCCCAAC 60.387 55.000 0.00 0.00 0.00 3.77
226 234 1.851021 CGCGTGCATTTCAGTCCCAA 61.851 55.000 0.00 0.00 0.00 4.12
227 235 2.324330 CGCGTGCATTTCAGTCCCA 61.324 57.895 0.00 0.00 0.00 4.37
228 236 1.970917 CTCGCGTGCATTTCAGTCCC 61.971 60.000 5.77 0.00 0.00 4.46
229 237 1.014044 TCTCGCGTGCATTTCAGTCC 61.014 55.000 5.77 0.00 0.00 3.85
230 238 0.093705 GTCTCGCGTGCATTTCAGTC 59.906 55.000 5.77 0.00 0.00 3.51
231 239 1.291877 GGTCTCGCGTGCATTTCAGT 61.292 55.000 5.77 0.00 0.00 3.41
232 240 1.421485 GGTCTCGCGTGCATTTCAG 59.579 57.895 5.77 0.00 0.00 3.02
233 241 2.379634 CGGTCTCGCGTGCATTTCA 61.380 57.895 5.77 0.00 0.00 2.69
234 242 2.395690 CGGTCTCGCGTGCATTTC 59.604 61.111 5.77 0.00 0.00 2.17
235 243 3.118454 CCGGTCTCGCGTGCATTT 61.118 61.111 5.77 0.00 34.56 2.32
242 250 4.771356 TTTCTCGCCGGTCTCGCG 62.771 66.667 1.90 0.00 37.30 5.87
243 251 2.431942 TTTTCTCGCCGGTCTCGC 60.432 61.111 1.90 0.00 34.56 5.03
244 252 1.372499 TGTTTTCTCGCCGGTCTCG 60.372 57.895 1.90 0.00 0.00 4.04
245 253 1.289800 GGTGTTTTCTCGCCGGTCTC 61.290 60.000 1.90 0.00 0.00 3.36
246 254 1.301479 GGTGTTTTCTCGCCGGTCT 60.301 57.895 1.90 0.00 0.00 3.85
247 255 1.566018 CTGGTGTTTTCTCGCCGGTC 61.566 60.000 1.90 0.00 40.48 4.79
248 256 1.597027 CTGGTGTTTTCTCGCCGGT 60.597 57.895 1.90 0.00 40.48 5.28
249 257 0.673644 ATCTGGTGTTTTCTCGCCGG 60.674 55.000 0.00 0.00 43.44 6.13
250 258 0.721718 GATCTGGTGTTTTCTCGCCG 59.278 55.000 0.00 0.00 40.48 6.46
251 259 2.100605 AGATCTGGTGTTTTCTCGCC 57.899 50.000 0.00 0.00 38.35 5.54
252 260 3.994392 TGTAAGATCTGGTGTTTTCTCGC 59.006 43.478 0.00 0.00 0.00 5.03
253 261 5.388475 CGTTGTAAGATCTGGTGTTTTCTCG 60.388 44.000 0.00 0.00 0.00 4.04
254 262 5.614887 GCGTTGTAAGATCTGGTGTTTTCTC 60.615 44.000 0.00 0.00 0.00 2.87
255 263 4.213482 GCGTTGTAAGATCTGGTGTTTTCT 59.787 41.667 0.00 0.00 0.00 2.52
256 264 4.464112 GCGTTGTAAGATCTGGTGTTTTC 58.536 43.478 0.00 0.00 0.00 2.29
257 265 3.252458 GGCGTTGTAAGATCTGGTGTTTT 59.748 43.478 0.00 0.00 0.00 2.43
258 266 2.812011 GGCGTTGTAAGATCTGGTGTTT 59.188 45.455 0.00 0.00 0.00 2.83
259 267 2.423577 GGCGTTGTAAGATCTGGTGTT 58.576 47.619 0.00 0.00 0.00 3.32
260 268 1.671850 CGGCGTTGTAAGATCTGGTGT 60.672 52.381 0.00 0.00 0.00 4.16
261 269 0.999406 CGGCGTTGTAAGATCTGGTG 59.001 55.000 0.00 0.00 0.00 4.17
262 270 0.108329 CCGGCGTTGTAAGATCTGGT 60.108 55.000 6.01 0.00 0.00 4.00
263 271 0.810031 CCCGGCGTTGTAAGATCTGG 60.810 60.000 6.01 0.00 0.00 3.86
264 272 0.810031 CCCCGGCGTTGTAAGATCTG 60.810 60.000 6.01 0.00 0.00 2.90
265 273 1.520666 CCCCGGCGTTGTAAGATCT 59.479 57.895 6.01 0.00 0.00 2.75
266 274 1.523032 CCCCCGGCGTTGTAAGATC 60.523 63.158 6.01 0.00 0.00 2.75
267 275 2.295602 ACCCCCGGCGTTGTAAGAT 61.296 57.895 6.01 0.00 0.00 2.40
268 276 2.924101 ACCCCCGGCGTTGTAAGA 60.924 61.111 6.01 0.00 0.00 2.10
269 277 2.744709 CACCCCCGGCGTTGTAAG 60.745 66.667 6.01 0.00 0.00 2.34
275 283 3.853183 TATTATCTCCACCCCCGGCGT 62.853 57.143 6.01 0.00 0.00 5.68
282 290 7.620094 ACCATGACTACTATATTATCTCCACCC 59.380 40.741 0.00 0.00 0.00 4.61
283 291 8.596781 ACCATGACTACTATATTATCTCCACC 57.403 38.462 0.00 0.00 0.00 4.61
292 300 9.148879 AGCTTCAAGTACCATGACTACTATATT 57.851 33.333 0.00 0.00 0.00 1.28
293 301 8.580720 CAGCTTCAAGTACCATGACTACTATAT 58.419 37.037 0.00 0.00 0.00 0.86
294 302 7.778382 TCAGCTTCAAGTACCATGACTACTATA 59.222 37.037 0.00 0.00 0.00 1.31
295 303 6.607600 TCAGCTTCAAGTACCATGACTACTAT 59.392 38.462 0.00 0.00 0.00 2.12
296 304 5.949952 TCAGCTTCAAGTACCATGACTACTA 59.050 40.000 0.00 0.00 0.00 1.82
299 307 5.738619 TTCAGCTTCAAGTACCATGACTA 57.261 39.130 0.00 0.00 0.00 2.59
300 308 4.623932 TTCAGCTTCAAGTACCATGACT 57.376 40.909 0.00 0.00 0.00 3.41
301 309 6.109359 ACTATTCAGCTTCAAGTACCATGAC 58.891 40.000 0.00 0.00 0.00 3.06
303 311 7.766278 AGTTACTATTCAGCTTCAAGTACCATG 59.234 37.037 0.00 0.00 0.00 3.66
315 323 8.852135 GTGGTTCTATCTAGTTACTATTCAGCT 58.148 37.037 0.00 0.00 0.00 4.24
320 328 9.251440 TGTGTGTGGTTCTATCTAGTTACTATT 57.749 33.333 0.00 0.00 0.00 1.73
322 330 8.683615 CATGTGTGTGGTTCTATCTAGTTACTA 58.316 37.037 0.00 0.00 0.00 1.82
323 331 7.178628 ACATGTGTGTGGTTCTATCTAGTTACT 59.821 37.037 0.00 0.00 37.14 2.24
324 332 7.321153 ACATGTGTGTGGTTCTATCTAGTTAC 58.679 38.462 0.00 0.00 37.14 2.50
325 333 7.476540 ACATGTGTGTGGTTCTATCTAGTTA 57.523 36.000 0.00 0.00 37.14 2.24
326 334 6.360370 ACATGTGTGTGGTTCTATCTAGTT 57.640 37.500 0.00 0.00 37.14 2.24
327 335 6.360370 AACATGTGTGTGGTTCTATCTAGT 57.640 37.500 0.00 0.00 38.92 2.57
328 336 6.477033 GCTAACATGTGTGTGGTTCTATCTAG 59.523 42.308 0.00 0.00 38.92 2.43
339 347 4.193826 ACCTAGAGCTAACATGTGTGTG 57.806 45.455 0.00 0.00 38.92 3.82
342 350 7.117397 TCTAAGTACCTAGAGCTAACATGTGT 58.883 38.462 0.00 0.00 0.00 3.72
349 357 9.217278 CGTATGAATCTAAGTACCTAGAGCTAA 57.783 37.037 7.28 0.00 31.51 3.09
363 371 8.515414 CATGACTCTATGACCGTATGAATCTAA 58.485 37.037 0.00 0.00 0.00 2.10
364 372 7.121315 CCATGACTCTATGACCGTATGAATCTA 59.879 40.741 0.00 0.00 0.00 1.98
365 373 6.071672 CCATGACTCTATGACCGTATGAATCT 60.072 42.308 0.00 0.00 0.00 2.40
372 380 2.361119 GCACCATGACTCTATGACCGTA 59.639 50.000 0.00 0.00 0.00 4.02
380 388 3.118775 AGCGTAAATGCACCATGACTCTA 60.119 43.478 0.00 0.00 37.31 2.43
383 391 1.739466 CAGCGTAAATGCACCATGACT 59.261 47.619 0.00 0.00 37.31 3.41
384 392 1.202177 CCAGCGTAAATGCACCATGAC 60.202 52.381 0.00 0.00 37.31 3.06
387 395 1.666209 GCCCAGCGTAAATGCACCAT 61.666 55.000 0.00 0.00 37.31 3.55
390 398 2.489751 GGCCCAGCGTAAATGCAC 59.510 61.111 0.00 0.00 37.31 4.57
392 400 3.887868 CCGGCCCAGCGTAAATGC 61.888 66.667 0.00 0.00 0.00 3.56
393 401 2.437716 ACCGGCCCAGCGTAAATG 60.438 61.111 0.00 0.00 0.00 2.32
394 402 2.437716 CACCGGCCCAGCGTAAAT 60.438 61.111 0.00 0.00 0.00 1.40
404 437 0.951040 CTTGAAGACTGTCACCGGCC 60.951 60.000 10.88 0.00 0.00 6.13
405 438 0.249911 ACTTGAAGACTGTCACCGGC 60.250 55.000 10.88 0.00 0.00 6.13
414 447 4.811557 GTGCAGTGTCTAAACTTGAAGACT 59.188 41.667 0.00 0.00 42.17 3.24
417 450 5.741388 AAGTGCAGTGTCTAAACTTGAAG 57.259 39.130 0.00 0.00 30.17 3.02
428 461 1.264288 GTGCCAACTAAGTGCAGTGTC 59.736 52.381 0.00 0.00 35.33 3.67
432 1749 2.880890 AGAAAGTGCCAACTAAGTGCAG 59.119 45.455 0.00 0.00 34.77 4.41
436 1753 6.970613 CGTTTAAAAGAAAGTGCCAACTAAGT 59.029 34.615 0.00 0.00 34.77 2.24
444 1761 5.419760 ACTCTCGTTTAAAAGAAAGTGCC 57.580 39.130 9.00 0.00 0.00 5.01
449 1766 9.252962 CCTAACTGTACTCTCGTTTAAAAGAAA 57.747 33.333 5.35 0.00 0.00 2.52
452 1769 6.867293 AGCCTAACTGTACTCTCGTTTAAAAG 59.133 38.462 0.00 0.00 0.00 2.27
455 1772 5.972107 AGCCTAACTGTACTCTCGTTTAA 57.028 39.130 0.00 0.00 0.00 1.52
456 1773 6.176183 ACTAGCCTAACTGTACTCTCGTTTA 58.824 40.000 0.00 0.00 0.00 2.01
457 1774 5.008980 ACTAGCCTAACTGTACTCTCGTTT 58.991 41.667 0.00 0.00 0.00 3.60
468 1785 1.067212 CCCACGCTACTAGCCTAACTG 59.933 57.143 2.32 0.00 38.18 3.16
474 1791 4.237207 GCCCCCACGCTACTAGCC 62.237 72.222 2.32 0.00 38.18 3.93
475 1792 3.467226 TGCCCCCACGCTACTAGC 61.467 66.667 0.00 0.00 38.02 3.42
476 1793 2.298158 CTGTGCCCCCACGCTACTAG 62.298 65.000 0.00 0.00 45.04 2.57
478 1795 3.706373 CTGTGCCCCCACGCTACT 61.706 66.667 0.00 0.00 45.04 2.57
480 1797 2.687200 ATCTGTGCCCCCACGCTA 60.687 61.111 0.00 0.00 45.04 4.26
482 1799 3.704231 ATGATCTGTGCCCCCACGC 62.704 63.158 0.00 0.00 45.04 5.34
483 1800 0.680921 AAATGATCTGTGCCCCCACG 60.681 55.000 0.00 0.00 45.04 4.94
484 1801 1.106285 GAAATGATCTGTGCCCCCAC 58.894 55.000 0.00 0.00 42.40 4.61
485 1802 0.394216 CGAAATGATCTGTGCCCCCA 60.394 55.000 0.00 0.00 0.00 4.96
486 1803 0.107214 TCGAAATGATCTGTGCCCCC 60.107 55.000 0.00 0.00 0.00 5.40
487 1804 1.017387 GTCGAAATGATCTGTGCCCC 58.983 55.000 0.00 0.00 0.00 5.80
490 1807 5.530519 TTTACAGTCGAAATGATCTGTGC 57.469 39.130 12.81 0.00 38.52 4.57
491 1808 8.446273 AGAAATTTACAGTCGAAATGATCTGTG 58.554 33.333 12.81 0.00 38.52 3.66
506 1851 2.083774 TGCCTCCGCAGAAATTTACAG 58.916 47.619 0.00 0.00 41.12 2.74
518 1863 0.798771 GTCGATCGATATGCCTCCGC 60.799 60.000 22.50 0.00 0.00 5.54
519 1864 0.179161 GGTCGATCGATATGCCTCCG 60.179 60.000 22.50 0.00 0.00 4.63
524 1869 1.073216 CCGCTGGTCGATCGATATGC 61.073 60.000 22.50 21.62 41.67 3.14
525 1870 0.521735 TCCGCTGGTCGATCGATATG 59.478 55.000 22.50 14.41 41.67 1.78
542 1887 4.777463 TCAAGAAAATCTTCCCCGTATCC 58.223 43.478 0.00 0.00 33.78 2.59
552 1897 6.925718 GGTTTTTAGCAGCTCAAGAAAATCTT 59.074 34.615 0.00 0.00 37.14 2.40
566 1911 1.535462 CCAGACGTGGGTTTTTAGCAG 59.465 52.381 0.00 0.00 40.67 4.24
571 1916 1.107945 CCAACCAGACGTGGGTTTTT 58.892 50.000 16.42 0.00 43.62 1.94
618 1963 4.284234 CCCAGATGTTGACATTTCCCTTTT 59.716 41.667 0.00 0.00 36.57 2.27
622 1970 3.019564 CTCCCAGATGTTGACATTTCCC 58.980 50.000 0.00 0.00 36.57 3.97
625 1973 6.729690 TTTTTCTCCCAGATGTTGACATTT 57.270 33.333 0.00 0.00 36.57 2.32
639 1987 3.382083 TCCTGGCCTTATTTTTCTCCC 57.618 47.619 3.32 0.00 0.00 4.30
675 2023 5.349817 GGTGCTAGCTATACATACATGCTTG 59.650 44.000 17.23 0.00 35.47 4.01
692 2040 1.205655 TGAAGTGCTGCTAGGTGCTAG 59.794 52.381 0.00 0.00 43.37 3.42
693 2041 1.266178 TGAAGTGCTGCTAGGTGCTA 58.734 50.000 0.00 0.00 43.37 3.49
694 2042 0.617413 ATGAAGTGCTGCTAGGTGCT 59.383 50.000 0.00 0.00 43.37 4.40
695 2043 1.012841 GATGAAGTGCTGCTAGGTGC 58.987 55.000 0.00 0.00 43.25 5.01
696 2044 2.277969 CTGATGAAGTGCTGCTAGGTG 58.722 52.381 0.00 0.00 0.00 4.00
697 2045 1.406614 GCTGATGAAGTGCTGCTAGGT 60.407 52.381 0.00 0.00 0.00 3.08
698 2046 1.297664 GCTGATGAAGTGCTGCTAGG 58.702 55.000 0.00 0.00 0.00 3.02
709 2057 2.076100 CTTTGTAGCGTGGCTGATGAA 58.924 47.619 0.00 0.00 40.10 2.57
744 2092 4.193334 GCGATTTGAAGGGGGCGC 62.193 66.667 0.00 0.00 37.60 6.53
746 2094 2.121538 GGAGCGATTTGAAGGGGGC 61.122 63.158 0.00 0.00 0.00 5.80
893 2251 2.750637 GACCGAGGGAGAGTGCGA 60.751 66.667 0.00 0.00 0.00 5.10
894 2252 2.343163 GATGACCGAGGGAGAGTGCG 62.343 65.000 0.00 0.00 0.00 5.34
903 2261 1.739049 GAGGAGCTGATGACCGAGG 59.261 63.158 0.00 0.00 0.00 4.63
1035 2398 7.985476 TCAAGCCTACTGCAAAATAAAGATAC 58.015 34.615 0.00 0.00 44.83 2.24
1036 2399 8.623903 CATCAAGCCTACTGCAAAATAAAGATA 58.376 33.333 0.00 0.00 44.83 1.98
1056 2420 1.400629 CGCACCTTCAAGCACATCAAG 60.401 52.381 0.00 0.00 0.00 3.02
1126 2506 5.734720 ACAGAGGTTAGTCACATTACCATG 58.265 41.667 0.00 0.00 36.34 3.66
1140 2520 4.955811 TCTGCAAGAAGAACAGAGGTTA 57.044 40.909 0.00 0.00 42.31 2.85
1300 2692 0.804989 GTGGTCATTTCGCTTCTGGG 59.195 55.000 0.00 0.00 0.00 4.45
1361 2753 6.382608 GGGTAAAAAGCAGAGAACAAAGATC 58.617 40.000 0.00 0.00 0.00 2.75
1381 2773 9.895138 GATGTACTAACTATTTTTCAAGGGGTA 57.105 33.333 0.00 0.00 0.00 3.69
1399 2791 5.401531 AACTTCGGAGCAAAGATGTACTA 57.598 39.130 0.00 0.00 0.00 1.82
1401 2793 4.451096 TGAAACTTCGGAGCAAAGATGTAC 59.549 41.667 0.00 0.00 0.00 2.90
1430 2823 0.249489 GATGACCGCAGCTAACCGAT 60.249 55.000 2.59 0.00 0.00 4.18
1462 2857 2.520500 TTTTGGGGCGAGCAAGCA 60.521 55.556 5.80 0.00 39.27 3.91
1467 2862 3.978460 TTTTTCTTTTGGGGCGAGC 57.022 47.368 0.00 0.00 0.00 5.03
1502 2897 0.471022 GGGGGAGGGACAAGCAAAAA 60.471 55.000 0.00 0.00 0.00 1.94
1549 2947 5.692204 ACGGAGTGCAGAAAATTAGATATCG 59.308 40.000 0.00 0.00 42.51 2.92
1553 2951 4.396166 CCAACGGAGTGCAGAAAATTAGAT 59.604 41.667 0.00 0.00 45.00 1.98
1564 2981 2.730382 TCTATAGACCAACGGAGTGCA 58.270 47.619 0.00 0.00 45.00 4.57
1580 2997 8.268605 TCATCGCTAGACCATTACTAGATCTAT 58.731 37.037 2.11 0.00 39.48 1.98
1668 3186 7.307396 CCTTGATACACACAAGACAAACAGTAG 60.307 40.741 0.00 0.00 44.92 2.57
1679 3197 4.398319 AGAAACCCCTTGATACACACAAG 58.602 43.478 0.00 0.00 42.72 3.16
1682 3200 3.244770 TGGAGAAACCCCTTGATACACAC 60.245 47.826 0.00 0.00 38.00 3.82
1721 3250 4.982241 AAAGGAGACCATGAAACAGAGA 57.018 40.909 0.00 0.00 0.00 3.10
1741 3270 2.250031 TGCCGACTAGTTGTAGGGAAA 58.750 47.619 9.32 0.00 38.66 3.13
1746 3282 3.731216 CGATTCATGCCGACTAGTTGTAG 59.269 47.826 9.32 0.00 0.00 2.74
1768 3304 6.017109 TGTTTGCTTCCATTAGTTGAGACTTC 60.017 38.462 0.00 0.00 37.33 3.01
1890 3454 9.304731 CCCAGAATAAATGACATTATGTTTGTG 57.695 33.333 0.00 0.00 0.00 3.33
1951 3517 6.811170 GGATTACTTGACTTCAGAGTTCAGAG 59.189 42.308 0.00 0.00 35.88 3.35
1952 3518 6.495181 AGGATTACTTGACTTCAGAGTTCAGA 59.505 38.462 0.00 0.00 35.88 3.27
1953 3519 6.589523 CAGGATTACTTGACTTCAGAGTTCAG 59.410 42.308 0.00 0.00 35.88 3.02
1954 3520 6.042093 ACAGGATTACTTGACTTCAGAGTTCA 59.958 38.462 0.00 0.00 35.88 3.18
1955 3521 6.459923 ACAGGATTACTTGACTTCAGAGTTC 58.540 40.000 0.00 0.00 35.88 3.01
1956 3522 6.268847 AGACAGGATTACTTGACTTCAGAGTT 59.731 38.462 0.00 0.00 35.88 3.01
1957 3523 5.777732 AGACAGGATTACTTGACTTCAGAGT 59.222 40.000 0.00 0.00 39.32 3.24
1958 3524 6.071672 TCAGACAGGATTACTTGACTTCAGAG 60.072 42.308 0.00 0.00 0.00 3.35
1985 3551 7.156000 TGTGTTCTCGAAACAGAATACCAATA 58.844 34.615 11.69 0.00 41.48 1.90
1988 3554 4.951254 TGTGTTCTCGAAACAGAATACCA 58.049 39.130 11.69 4.99 41.48 3.25
1989 3555 7.033791 TCTATGTGTTCTCGAAACAGAATACC 58.966 38.462 11.69 3.05 41.48 2.73
1990 3556 8.462143 TTCTATGTGTTCTCGAAACAGAATAC 57.538 34.615 11.69 8.59 42.14 1.89
1991 3557 9.140286 CTTTCTATGTGTTCTCGAAACAGAATA 57.860 33.333 11.69 11.40 34.86 1.75
1996 3562 6.513180 AGTCTTTCTATGTGTTCTCGAAACA 58.487 36.000 8.47 8.47 0.00 2.83
1999 3565 7.174426 TGAGTAGTCTTTCTATGTGTTCTCGAA 59.826 37.037 0.00 0.00 0.00 3.71
2007 3573 9.689976 CTCCAATATGAGTAGTCTTTCTATGTG 57.310 37.037 0.00 0.00 0.00 3.21
2013 3579 8.424918 TCCATTCTCCAATATGAGTAGTCTTTC 58.575 37.037 0.00 0.00 33.93 2.62
2018 3586 6.043590 TGCATCCATTCTCCAATATGAGTAGT 59.956 38.462 0.00 0.00 33.93 2.73
2066 3652 2.670905 CGTATGTCGGCAATCACTTGAA 59.329 45.455 0.00 0.00 33.88 2.69
2112 3698 2.176364 AGATTGCCCATGCTTACTCCAT 59.824 45.455 0.00 0.00 38.71 3.41
2177 3772 5.163385 CGGACCATGGACCACTAAGTTTATA 60.163 44.000 29.01 0.00 0.00 0.98
2178 3773 4.383770 CGGACCATGGACCACTAAGTTTAT 60.384 45.833 29.01 0.00 0.00 1.40
2218 3813 6.732896 AGGTATGGTCCTAAGTTCATACTG 57.267 41.667 10.74 0.00 40.76 2.74
2600 4195 6.649557 CCTTACTTATGACGACCTTCTTGTTT 59.350 38.462 0.00 0.00 0.00 2.83
2906 4502 0.814812 GTCTCCTAGGTACGAGCGCT 60.815 60.000 11.27 11.27 0.00 5.92
2930 4526 1.965754 GCTCATCCGGCTTCCAGTCT 61.966 60.000 0.00 0.00 0.00 3.24
2960 4556 0.379669 GTGCATCCTCAAGGCATTCG 59.620 55.000 0.00 0.00 40.05 3.34
3053 4649 6.370166 TCAGTGCATGATAACGTCATTTGTTA 59.630 34.615 0.00 0.00 45.25 2.41
3100 4696 9.574516 AAATAACATACTGAGGTTCTTCAAAGT 57.425 29.630 0.00 0.00 30.80 2.66
3111 4707 9.294030 GCAAAGAATGAAAATAACATACTGAGG 57.706 33.333 0.00 0.00 0.00 3.86
3176 4772 1.171308 CACCTGGCCTCAATGAACAG 58.829 55.000 3.32 3.27 0.00 3.16
3246 4846 6.378280 AGCACAACCCTCAAAATAAAGGATAG 59.622 38.462 0.00 0.00 34.35 2.08
3284 4884 5.184864 CCTTTGGAACCTGCACATTGTAATA 59.815 40.000 0.00 0.00 0.00 0.98
3329 4929 9.696572 ACACCTCTATATATATCATAACACCGT 57.303 33.333 0.00 0.00 0.00 4.83
3588 5193 7.240674 TGCGATAAAACAACAACTGTATCATC 58.759 34.615 0.00 0.00 37.23 2.92
3792 5399 3.047796 GCTCAAACATGTTTCAGTGCAG 58.952 45.455 21.31 9.59 0.00 4.41
3839 5446 4.377431 CGTCAAATCAAGCACAGTAGTTCC 60.377 45.833 0.00 0.00 0.00 3.62
3898 5505 4.022329 GTGGATTGTTTGGGATCGAAGTTT 60.022 41.667 0.00 0.00 0.00 2.66
3905 5512 3.119849 CGAGTTGTGGATTGTTTGGGATC 60.120 47.826 0.00 0.00 0.00 3.36
3906 5513 2.819608 CGAGTTGTGGATTGTTTGGGAT 59.180 45.455 0.00 0.00 0.00 3.85
3907 5514 2.158740 TCGAGTTGTGGATTGTTTGGGA 60.159 45.455 0.00 0.00 0.00 4.37
3908 5515 2.031157 GTCGAGTTGTGGATTGTTTGGG 60.031 50.000 0.00 0.00 0.00 4.12
3909 5516 2.616376 TGTCGAGTTGTGGATTGTTTGG 59.384 45.455 0.00 0.00 0.00 3.28
3910 5517 3.548014 GGTGTCGAGTTGTGGATTGTTTG 60.548 47.826 0.00 0.00 0.00 2.93
3911 5518 2.616842 GGTGTCGAGTTGTGGATTGTTT 59.383 45.455 0.00 0.00 0.00 2.83
3912 5519 2.218603 GGTGTCGAGTTGTGGATTGTT 58.781 47.619 0.00 0.00 0.00 2.83
3913 5520 1.542547 GGGTGTCGAGTTGTGGATTGT 60.543 52.381 0.00 0.00 0.00 2.71
3914 5521 1.156736 GGGTGTCGAGTTGTGGATTG 58.843 55.000 0.00 0.00 0.00 2.67
3915 5522 0.036306 GGGGTGTCGAGTTGTGGATT 59.964 55.000 0.00 0.00 0.00 3.01
3916 5523 0.836400 AGGGGTGTCGAGTTGTGGAT 60.836 55.000 0.00 0.00 0.00 3.41
3917 5524 1.458777 AGGGGTGTCGAGTTGTGGA 60.459 57.895 0.00 0.00 0.00 4.02
3918 5525 1.004918 GAGGGGTGTCGAGTTGTGG 60.005 63.158 0.00 0.00 0.00 4.17
3919 5526 1.004918 GGAGGGGTGTCGAGTTGTG 60.005 63.158 0.00 0.00 0.00 3.33
3920 5527 1.152312 AGGAGGGGTGTCGAGTTGT 60.152 57.895 0.00 0.00 0.00 3.32
3921 5528 1.592223 GAGGAGGGGTGTCGAGTTG 59.408 63.158 0.00 0.00 0.00 3.16
3922 5529 1.609794 GGAGGAGGGGTGTCGAGTT 60.610 63.158 0.00 0.00 0.00 3.01
3923 5530 2.037527 GGAGGAGGGGTGTCGAGT 59.962 66.667 0.00 0.00 0.00 4.18
3924 5531 2.760385 GGGAGGAGGGGTGTCGAG 60.760 72.222 0.00 0.00 0.00 4.04
3925 5532 4.393778 GGGGAGGAGGGGTGTCGA 62.394 72.222 0.00 0.00 0.00 4.20
3926 5533 4.400251 AGGGGAGGAGGGGTGTCG 62.400 72.222 0.00 0.00 0.00 4.35
3927 5534 2.365768 GAGGGGAGGAGGGGTGTC 60.366 72.222 0.00 0.00 0.00 3.67
3928 5535 2.876858 AGAGGGGAGGAGGGGTGT 60.877 66.667 0.00 0.00 0.00 4.16
3929 5536 2.041405 GAGAGGGGAGGAGGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
3930 5537 3.756783 CGAGAGGGGAGGAGGGGT 61.757 72.222 0.00 0.00 0.00 4.95
3933 5540 4.507916 TCGCGAGAGGGGAGGAGG 62.508 72.222 3.71 0.00 45.20 4.30
3934 5541 3.213402 GTCGCGAGAGGGGAGGAG 61.213 72.222 10.24 0.00 43.49 3.69
3935 5542 4.816984 GGTCGCGAGAGGGGAGGA 62.817 72.222 10.24 0.00 43.49 3.71
3980 5587 4.717313 GGGCGAGGTGTTGGGGAC 62.717 72.222 0.00 0.00 0.00 4.46
3985 5592 4.760047 CTCGGGGGCGAGGTGTTG 62.760 72.222 0.00 0.00 32.81 3.33
4009 5616 3.289454 AAGGAGGGAGGGAAGGGGG 62.289 68.421 0.00 0.00 0.00 5.40
4010 5617 2.003548 CAAGGAGGGAGGGAAGGGG 61.004 68.421 0.00 0.00 0.00 4.79
4011 5618 2.684499 GCAAGGAGGGAGGGAAGGG 61.684 68.421 0.00 0.00 0.00 3.95
4012 5619 2.684499 GGCAAGGAGGGAGGGAAGG 61.684 68.421 0.00 0.00 0.00 3.46
4013 5620 3.002371 GGCAAGGAGGGAGGGAAG 58.998 66.667 0.00 0.00 0.00 3.46
4014 5621 3.009115 CGGCAAGGAGGGAGGGAA 61.009 66.667 0.00 0.00 0.00 3.97
4085 5692 3.744155 GAGGGGAAAGGCCAGGGG 61.744 72.222 5.01 0.00 38.95 4.79
4086 5693 2.615288 AGAGGGGAAAGGCCAGGG 60.615 66.667 5.01 0.00 38.95 4.45
4087 5694 3.002371 GAGAGGGGAAAGGCCAGG 58.998 66.667 5.01 0.00 38.95 4.45
4088 5695 2.586792 CGAGAGGGGAAAGGCCAG 59.413 66.667 5.01 0.00 38.95 4.85
4100 5707 2.179517 GTCAGTGCGACCCGAGAG 59.820 66.667 0.00 0.00 38.85 3.20
4101 5708 3.733960 CGTCAGTGCGACCCGAGA 61.734 66.667 1.37 0.00 42.07 4.04
4141 5748 4.874977 GTCGCCGCCTAGGAGCAC 62.875 72.222 14.75 11.16 45.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.