Multiple sequence alignment - TraesCS5D01G216700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G216700 chr5D 100.000 2642 0 0 2003 4644 325961047 325963688 0.000000e+00 4879.0
1 TraesCS5D01G216700 chr5D 100.000 1709 0 0 1 1709 325959045 325960753 0.000000e+00 3157.0
2 TraesCS5D01G216700 chr5D 92.136 1526 91 8 2003 3515 325905806 325907315 0.000000e+00 2126.0
3 TraesCS5D01G216700 chr5D 91.676 937 63 9 781 1709 325904732 325905661 0.000000e+00 1284.0
4 TraesCS5D01G216700 chr5D 91.117 394 33 2 388 780 325904309 325904701 2.460000e-147 532.0
5 TraesCS5D01G216700 chr5D 84.510 439 45 6 3512 3940 325920370 325920795 3.340000e-111 412.0
6 TraesCS5D01G216700 chr5D 91.304 92 5 2 785 873 399614595 399614686 6.310000e-24 122.0
7 TraesCS5D01G216700 chr5D 95.890 73 2 1 705 777 325959432 325959361 2.940000e-22 117.0
8 TraesCS5D01G216700 chr5D 94.737 76 3 1 317 391 325959821 325959746 2.940000e-22 117.0
9 TraesCS5D01G216700 chr5A 96.550 1971 35 8 2003 3963 430639194 430637247 0.000000e+00 3232.0
10 TraesCS5D01G216700 chr5A 97.525 808 17 2 905 1709 430640325 430639518 0.000000e+00 1378.0
11 TraesCS5D01G216700 chr5A 89.963 538 44 9 781 1312 430645551 430645018 0.000000e+00 686.0
12 TraesCS5D01G216700 chr5A 91.216 444 39 0 2003 2446 430644561 430644118 5.140000e-169 604.0
13 TraesCS5D01G216700 chr5A 89.431 369 35 3 415 783 430645943 430645579 3.270000e-126 462.0
14 TraesCS5D01G216700 chr5A 87.871 404 10 5 4256 4644 430637155 430636776 5.520000e-119 438.0
15 TraesCS5D01G216700 chr5A 88.125 320 31 3 1391 1708 430645020 430644706 1.580000e-99 374.0
16 TraesCS5D01G216700 chr5A 82.000 250 35 6 399 646 491099679 491099920 2.190000e-48 204.0
17 TraesCS5D01G216700 chr5A 92.553 94 6 1 3993 4085 430637247 430637154 2.920000e-27 134.0
18 TraesCS5D01G216700 chr7D 93.347 1924 94 16 2021 3926 64383204 64385111 0.000000e+00 2813.0
19 TraesCS5D01G216700 chr7D 92.013 939 52 13 781 1709 64382143 64383068 0.000000e+00 1297.0
20 TraesCS5D01G216700 chr7D 90.049 412 21 7 4251 4644 64385358 64385767 2.480000e-142 516.0
21 TraesCS5D01G216700 chr7D 93.909 197 10 2 587 783 64381921 64382115 3.510000e-76 296.0
22 TraesCS5D01G216700 chr7D 88.816 152 7 3 402 553 64381779 64381920 1.330000e-40 178.0
23 TraesCS5D01G216700 chr7D 95.000 80 3 1 3921 4000 64385231 64385309 1.750000e-24 124.0
24 TraesCS5D01G216700 chr7A 93.243 1628 82 7 2030 3650 68189315 68190921 0.000000e+00 2372.0
25 TraesCS5D01G216700 chr7A 92.751 938 51 9 781 1709 68187971 68188900 0.000000e+00 1339.0
26 TraesCS5D01G216700 chr7A 91.272 401 20 6 388 780 68187547 68187940 2.460000e-147 532.0
27 TraesCS5D01G216700 chr7B 92.000 1525 44 16 2455 3955 5921902 5923372 0.000000e+00 2069.0
28 TraesCS5D01G216700 chr7B 98.276 638 7 2 781 1414 5919501 5920138 0.000000e+00 1114.0
29 TraesCS5D01G216700 chr7B 96.709 395 11 1 388 780 5919076 5919470 0.000000e+00 656.0
30 TraesCS5D01G216700 chr7B 97.445 274 7 0 1411 1684 5920249 5920522 7.040000e-128 468.0
31 TraesCS5D01G216700 chr7B 95.676 185 8 0 2015 2199 5920522 5920706 9.770000e-77 298.0
32 TraesCS5D01G216700 chr7B 93.421 76 4 1 317 391 5919467 5919392 1.370000e-20 111.0
33 TraesCS5D01G216700 chr1B 86.176 340 17 7 1 321 343664701 343664373 1.600000e-89 340.0
34 TraesCS5D01G216700 chr1D 84.366 339 24 9 1 321 270023895 270023568 5.840000e-79 305.0
35 TraesCS5D01G216700 chr1D 86.822 258 25 3 388 645 224403475 224403227 3.540000e-71 279.0
36 TraesCS5D01G216700 chr1A 83.090 343 25 8 1 321 343621719 343621388 9.840000e-72 281.0
37 TraesCS5D01G216700 chr4B 86.822 258 25 4 388 643 45507418 45507168 3.540000e-71 279.0
38 TraesCS5D01G216700 chr4B 90.857 175 15 1 4096 4270 488893128 488893301 2.790000e-57 233.0
39 TraesCS5D01G216700 chr4D 86.561 253 24 5 389 640 31808710 31808467 2.130000e-68 270.0
40 TraesCS5D01G216700 chr4D 82.443 262 32 7 391 646 30509329 30509076 2.810000e-52 217.0
41 TraesCS5D01G216700 chr4A 87.045 247 22 5 389 634 570994724 570994961 2.130000e-68 270.0
42 TraesCS5D01G216700 chr2A 93.125 160 11 0 4096 4255 275929391 275929232 7.770000e-58 235.0
43 TraesCS5D01G216700 chr6D 92.593 162 12 0 4096 4257 293177398 293177237 2.790000e-57 233.0
44 TraesCS5D01G216700 chr6D 87.402 127 8 4 391 517 187278140 187278022 6.270000e-29 139.0
45 TraesCS5D01G216700 chr3A 92.121 165 12 1 4096 4260 744921105 744920942 1.000000e-56 231.0
46 TraesCS5D01G216700 chr3A 89.944 179 15 2 4096 4274 548011459 548011634 1.300000e-55 228.0
47 TraesCS5D01G216700 chr3A 92.308 91 4 2 785 873 675873108 675873019 4.880000e-25 126.0
48 TraesCS5D01G216700 chr3A 97.561 41 1 0 738 778 387282656 387282616 2.320000e-08 71.3
49 TraesCS5D01G216700 chr2B 92.121 165 12 1 4096 4260 594833881 594834044 1.000000e-56 231.0
50 TraesCS5D01G216700 chr3D 90.395 177 14 2 4082 4258 79558710 79558537 3.610000e-56 230.0
51 TraesCS5D01G216700 chr3D 86.232 138 11 6 739 870 152489399 152489264 4.840000e-30 143.0
52 TraesCS5D01G216700 chr3D 89.286 56 6 0 723 778 320429995 320429940 2.320000e-08 71.3
53 TraesCS5D01G216700 chr3B 91.925 161 11 2 4096 4255 655849427 655849586 1.680000e-54 224.0
54 TraesCS5D01G216700 chr3B 85.496 131 11 6 739 863 222818608 222818480 3.770000e-26 130.0
55 TraesCS5D01G216700 chr2D 89.189 185 13 6 4072 4255 425287110 425286932 1.680000e-54 224.0
56 TraesCS5D01G216700 chr2D 93.069 101 7 0 520 620 350777737 350777837 1.040000e-31 148.0
57 TraesCS5D01G216700 chr5B 81.538 260 40 4 388 646 466563872 466564124 1.690000e-49 207.0
58 TraesCS5D01G216700 chr6A 81.592 201 32 5 4303 4500 1752942 1753140 1.340000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G216700 chr5D 325959045 325963688 4643 False 4018.000000 4879 100.00000 1 4644 2 chr5D.!!$F4 4643
1 TraesCS5D01G216700 chr5D 325904309 325907315 3006 False 1314.000000 2126 91.64300 388 3515 3 chr5D.!!$F3 3127
2 TraesCS5D01G216700 chr5A 430636776 430645943 9167 True 913.500000 3232 91.65425 415 4644 8 chr5A.!!$R1 4229
3 TraesCS5D01G216700 chr7D 64381779 64385767 3988 False 870.666667 2813 92.18900 402 4644 6 chr7D.!!$F1 4242
4 TraesCS5D01G216700 chr7A 68187547 68190921 3374 False 1414.333333 2372 92.42200 388 3650 3 chr7A.!!$F1 3262
5 TraesCS5D01G216700 chr7B 5919076 5923372 4296 False 921.000000 2069 96.02120 388 3955 5 chr7B.!!$F1 3567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.033504 GTGTTCGAGCTTCTCCACCA 59.966 55.0 0.00 0.0 0.00 4.17 F
263 264 0.033504 TGTTCGAGCTTCTCCACCAC 59.966 55.0 0.00 0.0 0.00 4.16 F
334 335 0.108585 GACCTGTGTGGGAGCTTTCA 59.891 55.0 0.00 0.0 41.11 2.69 F
353 354 0.181824 AACACTGTGTACGCCCCTTT 59.818 50.0 14.69 0.0 0.00 3.11 F
354 355 0.181824 ACACTGTGTACGCCCCTTTT 59.818 50.0 12.53 0.0 0.00 2.27 F
813 885 0.185901 TTCTGCAAGGAGGCTGGTTT 59.814 50.0 0.00 0.0 33.99 3.27 F
1083 6262 0.396060 CAGAGGCTGATAGGGAAGGC 59.604 60.0 0.00 0.0 39.18 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 6955 0.107945 GACTGCTCAGGATGGTGGAC 60.108 60.000 1.66 0.00 36.16 4.02 R
2058 7454 2.368875 ACGAAGTTGATGACCTTGTCCT 59.631 45.455 0.00 0.00 37.78 3.85 R
2094 7490 3.390135 TCTTTCTTGACGCACTTGTAGG 58.610 45.455 0.00 0.00 0.00 3.18 R
2520 8859 2.346766 TGCTGGTGTCATGTTCTGTT 57.653 45.000 0.00 0.00 0.00 3.16 R
3180 9535 3.230134 TCCCCTTGAAAAACATCACCTG 58.770 45.455 0.00 0.00 0.00 4.00 R
3411 9766 4.003788 CCGGACCTTGCACTCGGT 62.004 66.667 0.00 1.38 36.38 4.69 R
3773 10149 2.124445 GTGCCAACCGTATCCCCC 60.124 66.667 0.00 0.00 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.208686 CTCTCCGGCGCCTGGTAC 62.209 72.222 28.39 3.30 0.00 3.34
42 43 4.077184 CTCCGGCGCCTGGTACAA 62.077 66.667 28.39 14.13 38.70 2.41
43 44 4.382320 TCCGGCGCCTGGTACAAC 62.382 66.667 28.39 1.18 38.70 3.32
46 47 4.692475 GGCGCCTGGTACAACCGT 62.692 66.667 22.15 0.00 42.58 4.83
47 48 3.116531 GCGCCTGGTACAACCGTC 61.117 66.667 0.00 0.00 42.58 4.79
48 49 2.340809 CGCCTGGTACAACCGTCA 59.659 61.111 0.00 0.00 42.58 4.35
49 50 1.079405 CGCCTGGTACAACCGTCAT 60.079 57.895 0.00 0.00 42.58 3.06
50 51 0.173935 CGCCTGGTACAACCGTCATA 59.826 55.000 0.00 0.00 42.58 2.15
51 52 1.202486 CGCCTGGTACAACCGTCATAT 60.202 52.381 0.00 0.00 42.58 1.78
52 53 2.210116 GCCTGGTACAACCGTCATATG 58.790 52.381 0.00 0.00 42.58 1.78
53 54 2.210116 CCTGGTACAACCGTCATATGC 58.790 52.381 0.00 0.00 42.58 3.14
54 55 2.210116 CTGGTACAACCGTCATATGCC 58.790 52.381 0.00 0.00 42.58 4.40
55 56 1.834896 TGGTACAACCGTCATATGCCT 59.165 47.619 0.00 0.00 42.58 4.75
56 57 2.210116 GGTACAACCGTCATATGCCTG 58.790 52.381 0.00 0.00 0.00 4.85
57 58 1.597663 GTACAACCGTCATATGCCTGC 59.402 52.381 0.00 0.00 0.00 4.85
58 59 0.748005 ACAACCGTCATATGCCTGCC 60.748 55.000 0.00 0.00 0.00 4.85
59 60 1.523711 AACCGTCATATGCCTGCCG 60.524 57.895 0.00 0.00 0.00 5.69
60 61 3.349006 CCGTCATATGCCTGCCGC 61.349 66.667 0.00 0.00 38.31 6.53
61 62 3.349006 CGTCATATGCCTGCCGCC 61.349 66.667 0.00 0.00 36.24 6.13
62 63 2.203195 GTCATATGCCTGCCGCCA 60.203 61.111 0.00 0.00 36.24 5.69
63 64 1.601759 GTCATATGCCTGCCGCCAT 60.602 57.895 0.00 0.00 36.24 4.40
64 65 1.302752 TCATATGCCTGCCGCCATC 60.303 57.895 0.00 0.00 36.24 3.51
65 66 1.303074 CATATGCCTGCCGCCATCT 60.303 57.895 0.00 0.00 36.24 2.90
66 67 1.303074 ATATGCCTGCCGCCATCTG 60.303 57.895 0.00 0.00 36.24 2.90
77 78 4.899239 CCATCTGCGCCCGACTCC 62.899 72.222 4.18 0.00 0.00 3.85
78 79 4.899239 CATCTGCGCCCGACTCCC 62.899 72.222 4.18 0.00 0.00 4.30
85 86 4.097361 GCCCGACTCCCCCTTGTC 62.097 72.222 0.00 0.00 0.00 3.18
89 90 2.979649 GACTCCCCCTTGTCGACC 59.020 66.667 14.12 0.00 0.00 4.79
90 91 1.609794 GACTCCCCCTTGTCGACCT 60.610 63.158 14.12 0.00 0.00 3.85
91 92 1.605971 GACTCCCCCTTGTCGACCTC 61.606 65.000 14.12 0.00 0.00 3.85
92 93 2.678934 TCCCCCTTGTCGACCTCG 60.679 66.667 14.12 0.79 41.45 4.63
93 94 2.995574 CCCCCTTGTCGACCTCGT 60.996 66.667 14.12 0.00 40.80 4.18
94 95 2.572284 CCCCTTGTCGACCTCGTC 59.428 66.667 14.12 0.00 40.80 4.20
95 96 2.572284 CCCTTGTCGACCTCGTCC 59.428 66.667 14.12 0.00 40.80 4.79
96 97 1.977544 CCCTTGTCGACCTCGTCCT 60.978 63.158 14.12 0.00 40.80 3.85
97 98 1.507174 CCTTGTCGACCTCGTCCTC 59.493 63.158 14.12 0.00 40.80 3.71
98 99 1.134901 CTTGTCGACCTCGTCCTCG 59.865 63.158 14.12 0.00 40.80 4.63
99 100 1.296755 CTTGTCGACCTCGTCCTCGA 61.297 60.000 14.12 0.00 44.12 4.04
107 108 2.257371 TCGTCCTCGAGGTTTGCG 59.743 61.111 30.17 26.11 41.35 4.85
108 109 2.257371 CGTCCTCGAGGTTTGCGA 59.743 61.111 30.17 7.85 39.71 5.10
109 110 2.087009 CGTCCTCGAGGTTTGCGAC 61.087 63.158 30.17 18.59 39.71 5.19
110 111 2.087009 GTCCTCGAGGTTTGCGACG 61.087 63.158 30.17 2.13 36.34 5.12
111 112 3.479269 CCTCGAGGTTTGCGACGC 61.479 66.667 24.04 14.19 33.71 5.19
112 113 3.479269 CTCGAGGTTTGCGACGCC 61.479 66.667 18.69 1.11 33.71 5.68
157 158 4.003788 CACCGCCACCGTCCTTCT 62.004 66.667 0.00 0.00 0.00 2.85
158 159 3.239253 ACCGCCACCGTCCTTCTT 61.239 61.111 0.00 0.00 0.00 2.52
159 160 2.742372 CCGCCACCGTCCTTCTTG 60.742 66.667 0.00 0.00 0.00 3.02
160 161 2.030562 CGCCACCGTCCTTCTTGT 59.969 61.111 0.00 0.00 0.00 3.16
161 162 1.597027 CGCCACCGTCCTTCTTGTT 60.597 57.895 0.00 0.00 0.00 2.83
162 163 1.566018 CGCCACCGTCCTTCTTGTTC 61.566 60.000 0.00 0.00 0.00 3.18
163 164 1.235281 GCCACCGTCCTTCTTGTTCC 61.235 60.000 0.00 0.00 0.00 3.62
164 165 0.605589 CCACCGTCCTTCTTGTTCCC 60.606 60.000 0.00 0.00 0.00 3.97
165 166 0.605589 CACCGTCCTTCTTGTTCCCC 60.606 60.000 0.00 0.00 0.00 4.81
166 167 0.767060 ACCGTCCTTCTTGTTCCCCT 60.767 55.000 0.00 0.00 0.00 4.79
167 168 0.036294 CCGTCCTTCTTGTTCCCCTC 60.036 60.000 0.00 0.00 0.00 4.30
168 169 0.977395 CGTCCTTCTTGTTCCCCTCT 59.023 55.000 0.00 0.00 0.00 3.69
169 170 1.066787 CGTCCTTCTTGTTCCCCTCTC 60.067 57.143 0.00 0.00 0.00 3.20
170 171 1.279558 GTCCTTCTTGTTCCCCTCTCC 59.720 57.143 0.00 0.00 0.00 3.71
171 172 1.132527 TCCTTCTTGTTCCCCTCTCCA 60.133 52.381 0.00 0.00 0.00 3.86
172 173 1.003696 CCTTCTTGTTCCCCTCTCCAC 59.996 57.143 0.00 0.00 0.00 4.02
173 174 1.003696 CTTCTTGTTCCCCTCTCCACC 59.996 57.143 0.00 0.00 0.00 4.61
174 175 0.193574 TCTTGTTCCCCTCTCCACCT 59.806 55.000 0.00 0.00 0.00 4.00
175 176 1.068121 CTTGTTCCCCTCTCCACCTT 58.932 55.000 0.00 0.00 0.00 3.50
176 177 1.425448 CTTGTTCCCCTCTCCACCTTT 59.575 52.381 0.00 0.00 0.00 3.11
177 178 1.529744 TGTTCCCCTCTCCACCTTTT 58.470 50.000 0.00 0.00 0.00 2.27
178 179 2.708759 TGTTCCCCTCTCCACCTTTTA 58.291 47.619 0.00 0.00 0.00 1.52
179 180 2.642807 TGTTCCCCTCTCCACCTTTTAG 59.357 50.000 0.00 0.00 0.00 1.85
180 181 2.910977 GTTCCCCTCTCCACCTTTTAGA 59.089 50.000 0.00 0.00 0.00 2.10
181 182 2.547990 TCCCCTCTCCACCTTTTAGAC 58.452 52.381 0.00 0.00 0.00 2.59
182 183 1.207329 CCCCTCTCCACCTTTTAGACG 59.793 57.143 0.00 0.00 0.00 4.18
183 184 2.176889 CCCTCTCCACCTTTTAGACGA 58.823 52.381 0.00 0.00 0.00 4.20
184 185 2.166664 CCCTCTCCACCTTTTAGACGAG 59.833 54.545 0.00 0.00 0.00 4.18
185 186 3.090037 CCTCTCCACCTTTTAGACGAGA 58.910 50.000 0.00 0.00 0.00 4.04
186 187 3.119424 CCTCTCCACCTTTTAGACGAGAC 60.119 52.174 0.00 0.00 0.00 3.36
187 188 2.486982 TCTCCACCTTTTAGACGAGACG 59.513 50.000 0.00 0.00 0.00 4.18
188 189 1.542915 TCCACCTTTTAGACGAGACGG 59.457 52.381 0.00 0.00 0.00 4.79
189 190 1.403780 CCACCTTTTAGACGAGACGGG 60.404 57.143 0.00 0.00 0.00 5.28
190 191 1.542915 CACCTTTTAGACGAGACGGGA 59.457 52.381 0.00 0.00 0.00 5.14
191 192 2.165845 CACCTTTTAGACGAGACGGGAT 59.834 50.000 0.00 0.00 0.00 3.85
192 193 2.830321 ACCTTTTAGACGAGACGGGATT 59.170 45.455 0.00 0.00 0.00 3.01
193 194 3.119209 ACCTTTTAGACGAGACGGGATTC 60.119 47.826 0.00 0.00 0.00 2.52
194 195 2.838386 TTTAGACGAGACGGGATTCG 57.162 50.000 0.00 0.00 45.88 3.34
195 196 2.028420 TTAGACGAGACGGGATTCGA 57.972 50.000 0.51 0.00 42.43 3.71
196 197 1.293924 TAGACGAGACGGGATTCGAC 58.706 55.000 0.51 0.00 42.43 4.20
197 198 0.392729 AGACGAGACGGGATTCGACT 60.393 55.000 0.51 0.00 45.54 4.18
198 199 1.134580 AGACGAGACGGGATTCGACTA 60.135 52.381 0.51 0.00 43.20 2.59
199 200 1.667724 GACGAGACGGGATTCGACTAA 59.332 52.381 0.51 0.00 43.20 2.24
200 201 1.399791 ACGAGACGGGATTCGACTAAC 59.600 52.381 0.51 0.00 43.20 2.34
201 202 1.399440 CGAGACGGGATTCGACTAACA 59.601 52.381 0.00 0.00 43.20 2.41
202 203 2.159476 CGAGACGGGATTCGACTAACAA 60.159 50.000 0.00 0.00 43.20 2.83
203 204 3.488721 CGAGACGGGATTCGACTAACAAT 60.489 47.826 0.00 0.00 43.20 2.71
204 205 4.430908 GAGACGGGATTCGACTAACAATT 58.569 43.478 0.00 0.00 43.20 2.32
205 206 4.430908 AGACGGGATTCGACTAACAATTC 58.569 43.478 0.00 0.00 41.58 2.17
206 207 4.081862 AGACGGGATTCGACTAACAATTCA 60.082 41.667 0.00 0.00 41.58 2.57
207 208 3.930848 ACGGGATTCGACTAACAATTCAC 59.069 43.478 0.00 0.00 42.43 3.18
208 209 3.930229 CGGGATTCGACTAACAATTCACA 59.070 43.478 0.00 0.00 42.43 3.58
209 210 4.390603 CGGGATTCGACTAACAATTCACAA 59.609 41.667 0.00 0.00 42.43 3.33
210 211 5.445939 CGGGATTCGACTAACAATTCACAAG 60.446 44.000 0.00 0.00 42.43 3.16
211 212 5.324697 GGATTCGACTAACAATTCACAAGC 58.675 41.667 0.00 0.00 0.00 4.01
212 213 5.122396 GGATTCGACTAACAATTCACAAGCT 59.878 40.000 0.00 0.00 0.00 3.74
213 214 5.591643 TTCGACTAACAATTCACAAGCTC 57.408 39.130 0.00 0.00 0.00 4.09
214 215 3.994392 TCGACTAACAATTCACAAGCTCC 59.006 43.478 0.00 0.00 0.00 4.70
215 216 3.125316 CGACTAACAATTCACAAGCTCCC 59.875 47.826 0.00 0.00 0.00 4.30
216 217 4.327680 GACTAACAATTCACAAGCTCCCT 58.672 43.478 0.00 0.00 0.00 4.20
217 218 4.327680 ACTAACAATTCACAAGCTCCCTC 58.672 43.478 0.00 0.00 0.00 4.30
218 219 3.515602 AACAATTCACAAGCTCCCTCT 57.484 42.857 0.00 0.00 0.00 3.69
219 220 3.064900 ACAATTCACAAGCTCCCTCTC 57.935 47.619 0.00 0.00 0.00 3.20
220 221 2.290577 ACAATTCACAAGCTCCCTCTCC 60.291 50.000 0.00 0.00 0.00 3.71
221 222 0.915364 ATTCACAAGCTCCCTCTCCC 59.085 55.000 0.00 0.00 0.00 4.30
222 223 0.178891 TTCACAAGCTCCCTCTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
223 224 0.616111 TCACAAGCTCCCTCTCCCTC 60.616 60.000 0.00 0.00 0.00 4.30
224 225 1.684049 ACAAGCTCCCTCTCCCTCG 60.684 63.158 0.00 0.00 0.00 4.63
225 226 2.762043 AAGCTCCCTCTCCCTCGC 60.762 66.667 0.00 0.00 0.00 5.03
226 227 3.608759 AAGCTCCCTCTCCCTCGCA 62.609 63.158 0.00 0.00 0.00 5.10
227 228 3.535962 GCTCCCTCTCCCTCGCAG 61.536 72.222 0.00 0.00 0.00 5.18
228 229 2.837291 CTCCCTCTCCCTCGCAGG 60.837 72.222 0.00 0.00 34.30 4.85
229 230 3.670629 CTCCCTCTCCCTCGCAGGT 62.671 68.421 2.18 0.00 31.93 4.00
230 231 2.279073 CCCTCTCCCTCGCAGGTA 59.721 66.667 2.18 0.00 31.93 3.08
231 232 2.128507 CCCTCTCCCTCGCAGGTAC 61.129 68.421 2.18 0.00 31.93 3.34
232 233 2.128507 CCTCTCCCTCGCAGGTACC 61.129 68.421 2.73 2.73 31.93 3.34
233 234 1.076632 CTCTCCCTCGCAGGTACCT 60.077 63.158 9.21 9.21 31.93 3.08
234 235 1.379977 TCTCCCTCGCAGGTACCTG 60.380 63.158 33.74 33.74 46.15 4.00
242 243 2.579201 CAGGTACCTGCCACCTCG 59.421 66.667 28.48 2.91 44.81 4.63
243 244 2.683933 AGGTACCTGCCACCTCGG 60.684 66.667 15.42 0.00 43.04 4.63
244 245 3.001406 GGTACCTGCCACCTCGGT 61.001 66.667 4.06 0.00 36.97 4.69
245 246 2.264794 GTACCTGCCACCTCGGTG 59.735 66.667 9.13 9.13 45.02 4.94
246 247 2.203728 TACCTGCCACCTCGGTGT 60.204 61.111 14.51 0.00 44.02 4.16
247 248 1.839747 TACCTGCCACCTCGGTGTT 60.840 57.895 14.51 0.00 44.02 3.32
248 249 1.823169 TACCTGCCACCTCGGTGTTC 61.823 60.000 14.51 6.93 44.02 3.18
249 250 2.738521 CTGCCACCTCGGTGTTCG 60.739 66.667 14.51 1.42 44.02 3.95
250 251 3.220999 CTGCCACCTCGGTGTTCGA 62.221 63.158 14.51 0.00 46.77 3.71
258 259 1.585006 TCGGTGTTCGAGCTTCTCC 59.415 57.895 0.00 0.00 43.74 3.71
259 260 1.176619 TCGGTGTTCGAGCTTCTCCA 61.177 55.000 0.00 0.00 43.74 3.86
260 261 1.009389 CGGTGTTCGAGCTTCTCCAC 61.009 60.000 0.00 0.00 42.43 4.02
261 262 0.670854 GGTGTTCGAGCTTCTCCACC 60.671 60.000 9.79 9.79 34.84 4.61
262 263 0.033504 GTGTTCGAGCTTCTCCACCA 59.966 55.000 0.00 0.00 0.00 4.17
263 264 0.033504 TGTTCGAGCTTCTCCACCAC 59.966 55.000 0.00 0.00 0.00 4.16
264 265 0.670854 GTTCGAGCTTCTCCACCACC 60.671 60.000 0.00 0.00 0.00 4.61
265 266 2.125912 CGAGCTTCTCCACCACCG 60.126 66.667 0.00 0.00 0.00 4.94
266 267 2.435059 GAGCTTCTCCACCACCGC 60.435 66.667 0.00 0.00 0.00 5.68
267 268 2.925170 AGCTTCTCCACCACCGCT 60.925 61.111 0.00 0.00 0.00 5.52
268 269 2.435059 GCTTCTCCACCACCGCTC 60.435 66.667 0.00 0.00 0.00 5.03
269 270 2.266055 CTTCTCCACCACCGCTCC 59.734 66.667 0.00 0.00 0.00 4.70
270 271 3.316573 CTTCTCCACCACCGCTCCC 62.317 68.421 0.00 0.00 0.00 4.30
271 272 3.846405 TTCTCCACCACCGCTCCCT 62.846 63.158 0.00 0.00 0.00 4.20
272 273 4.087892 CTCCACCACCGCTCCCTG 62.088 72.222 0.00 0.00 0.00 4.45
275 276 3.402681 CACCACCGCTCCCTGGAT 61.403 66.667 0.00 0.00 0.00 3.41
276 277 3.402681 ACCACCGCTCCCTGGATG 61.403 66.667 0.00 0.00 0.00 3.51
277 278 3.083349 CCACCGCTCCCTGGATGA 61.083 66.667 0.00 0.00 0.00 2.92
278 279 2.503061 CACCGCTCCCTGGATGAG 59.497 66.667 0.00 0.00 0.00 2.90
288 289 2.265739 TGGATGAGCCAGACGTGC 59.734 61.111 0.00 0.00 43.33 5.34
289 290 2.887568 GGATGAGCCAGACGTGCG 60.888 66.667 0.00 0.00 36.34 5.34
290 291 2.125912 GATGAGCCAGACGTGCGT 60.126 61.111 0.00 0.00 0.00 5.24
291 292 2.125912 ATGAGCCAGACGTGCGTC 60.126 61.111 15.92 15.92 44.86 5.19
310 311 3.403057 GCTCGTCGCGCTCAACAA 61.403 61.111 5.56 0.00 0.00 2.83
311 312 2.765785 CTCGTCGCGCTCAACAAG 59.234 61.111 5.56 0.00 0.00 3.16
312 313 2.720758 CTCGTCGCGCTCAACAAGG 61.721 63.158 5.56 0.00 0.00 3.61
313 314 2.733218 CGTCGCGCTCAACAAGGA 60.733 61.111 5.56 0.00 0.00 3.36
314 315 2.853914 GTCGCGCTCAACAAGGAC 59.146 61.111 5.56 0.00 0.00 3.85
315 316 2.733218 TCGCGCTCAACAAGGACG 60.733 61.111 5.56 0.00 0.00 4.79
316 317 2.733218 CGCGCTCAACAAGGACGA 60.733 61.111 5.56 0.00 0.00 4.20
317 318 2.853914 GCGCTCAACAAGGACGAC 59.146 61.111 0.00 0.00 0.00 4.34
318 319 2.668280 GCGCTCAACAAGGACGACC 61.668 63.158 0.00 0.00 0.00 4.79
327 328 2.200370 AGGACGACCTGTGTGGGA 59.800 61.111 5.39 0.00 45.92 4.37
328 329 1.908793 AGGACGACCTGTGTGGGAG 60.909 63.158 5.39 0.00 45.92 4.30
329 330 2.048127 GACGACCTGTGTGGGAGC 60.048 66.667 0.00 0.00 41.11 4.70
330 331 2.524394 ACGACCTGTGTGGGAGCT 60.524 61.111 0.00 0.00 41.11 4.09
331 332 2.100879 GACGACCTGTGTGGGAGCTT 62.101 60.000 0.00 0.00 41.11 3.74
332 333 1.071471 CGACCTGTGTGGGAGCTTT 59.929 57.895 0.00 0.00 41.11 3.51
333 334 0.951040 CGACCTGTGTGGGAGCTTTC 60.951 60.000 0.00 0.00 41.11 2.62
334 335 0.108585 GACCTGTGTGGGAGCTTTCA 59.891 55.000 0.00 0.00 41.11 2.69
335 336 0.550914 ACCTGTGTGGGAGCTTTCAA 59.449 50.000 0.00 0.00 41.11 2.69
336 337 0.954452 CCTGTGTGGGAGCTTTCAAC 59.046 55.000 0.00 0.00 0.00 3.18
337 338 1.679139 CTGTGTGGGAGCTTTCAACA 58.321 50.000 0.00 0.00 0.00 3.33
338 339 1.334869 CTGTGTGGGAGCTTTCAACAC 59.665 52.381 17.00 17.00 0.00 3.32
339 340 1.064758 TGTGTGGGAGCTTTCAACACT 60.065 47.619 21.54 0.00 33.44 3.55
340 341 1.334869 GTGTGGGAGCTTTCAACACTG 59.665 52.381 16.72 0.00 33.44 3.66
341 342 1.064758 TGTGGGAGCTTTCAACACTGT 60.065 47.619 0.00 0.00 33.44 3.55
342 343 1.334869 GTGGGAGCTTTCAACACTGTG 59.665 52.381 6.19 6.19 0.00 3.66
343 344 1.064758 TGGGAGCTTTCAACACTGTGT 60.065 47.619 7.80 7.80 0.00 3.72
344 345 2.171659 TGGGAGCTTTCAACACTGTGTA 59.828 45.455 14.69 0.00 0.00 2.90
345 346 2.548480 GGGAGCTTTCAACACTGTGTAC 59.452 50.000 14.69 0.41 0.00 2.90
346 347 2.221055 GGAGCTTTCAACACTGTGTACG 59.779 50.000 14.69 8.80 0.00 3.67
347 348 1.597663 AGCTTTCAACACTGTGTACGC 59.402 47.619 14.69 8.12 0.00 4.42
348 349 1.333791 GCTTTCAACACTGTGTACGCC 60.334 52.381 14.69 0.00 0.00 5.68
349 350 1.263217 CTTTCAACACTGTGTACGCCC 59.737 52.381 14.69 0.00 0.00 6.13
350 351 0.533308 TTCAACACTGTGTACGCCCC 60.533 55.000 14.69 0.00 0.00 5.80
351 352 1.070786 CAACACTGTGTACGCCCCT 59.929 57.895 14.69 0.00 0.00 4.79
352 353 0.534203 CAACACTGTGTACGCCCCTT 60.534 55.000 14.69 0.00 0.00 3.95
353 354 0.181824 AACACTGTGTACGCCCCTTT 59.818 50.000 14.69 0.00 0.00 3.11
354 355 0.181824 ACACTGTGTACGCCCCTTTT 59.818 50.000 12.53 0.00 0.00 2.27
355 356 0.872388 CACTGTGTACGCCCCTTTTC 59.128 55.000 3.51 0.00 0.00 2.29
356 357 0.470766 ACTGTGTACGCCCCTTTTCA 59.529 50.000 3.51 0.00 0.00 2.69
357 358 1.134037 ACTGTGTACGCCCCTTTTCAA 60.134 47.619 3.51 0.00 0.00 2.69
358 359 2.159382 CTGTGTACGCCCCTTTTCAAT 58.841 47.619 3.51 0.00 0.00 2.57
359 360 2.156098 TGTGTACGCCCCTTTTCAATC 58.844 47.619 3.51 0.00 0.00 2.67
360 361 2.156098 GTGTACGCCCCTTTTCAATCA 58.844 47.619 0.00 0.00 0.00 2.57
361 362 2.095415 GTGTACGCCCCTTTTCAATCAC 60.095 50.000 0.00 0.00 0.00 3.06
362 363 2.156098 GTACGCCCCTTTTCAATCACA 58.844 47.619 0.00 0.00 0.00 3.58
363 364 1.698506 ACGCCCCTTTTCAATCACAA 58.301 45.000 0.00 0.00 0.00 3.33
364 365 1.613437 ACGCCCCTTTTCAATCACAAG 59.387 47.619 0.00 0.00 0.00 3.16
365 366 1.613437 CGCCCCTTTTCAATCACAAGT 59.387 47.619 0.00 0.00 0.00 3.16
366 367 2.817258 CGCCCCTTTTCAATCACAAGTA 59.183 45.455 0.00 0.00 0.00 2.24
367 368 3.443681 CGCCCCTTTTCAATCACAAGTAT 59.556 43.478 0.00 0.00 0.00 2.12
368 369 4.675146 CGCCCCTTTTCAATCACAAGTATG 60.675 45.833 0.00 0.00 0.00 2.39
369 370 4.462483 GCCCCTTTTCAATCACAAGTATGA 59.538 41.667 0.00 0.00 0.00 2.15
370 371 5.622233 GCCCCTTTTCAATCACAAGTATGAC 60.622 44.000 0.00 0.00 0.00 3.06
371 372 5.476599 CCCCTTTTCAATCACAAGTATGACA 59.523 40.000 0.00 0.00 0.00 3.58
372 373 6.381801 CCCTTTTCAATCACAAGTATGACAC 58.618 40.000 0.00 0.00 0.00 3.67
373 374 6.381801 CCTTTTCAATCACAAGTATGACACC 58.618 40.000 0.00 0.00 0.00 4.16
374 375 5.605564 TTTCAATCACAAGTATGACACCG 57.394 39.130 0.00 0.00 0.00 4.94
375 376 4.529109 TCAATCACAAGTATGACACCGA 57.471 40.909 0.00 0.00 0.00 4.69
376 377 4.494484 TCAATCACAAGTATGACACCGAG 58.506 43.478 0.00 0.00 0.00 4.63
377 378 4.219725 TCAATCACAAGTATGACACCGAGA 59.780 41.667 0.00 0.00 0.00 4.04
378 379 5.105351 TCAATCACAAGTATGACACCGAGAT 60.105 40.000 0.00 0.00 0.00 2.75
379 380 4.801330 TCACAAGTATGACACCGAGATT 57.199 40.909 0.00 0.00 0.00 2.40
380 381 4.744570 TCACAAGTATGACACCGAGATTC 58.255 43.478 0.00 0.00 0.00 2.52
381 382 4.462834 TCACAAGTATGACACCGAGATTCT 59.537 41.667 0.00 0.00 0.00 2.40
382 383 5.650703 TCACAAGTATGACACCGAGATTCTA 59.349 40.000 0.00 0.00 0.00 2.10
383 384 5.744345 CACAAGTATGACACCGAGATTCTAC 59.256 44.000 0.00 0.00 0.00 2.59
384 385 5.417894 ACAAGTATGACACCGAGATTCTACA 59.582 40.000 0.00 0.00 0.00 2.74
385 386 6.071560 ACAAGTATGACACCGAGATTCTACAA 60.072 38.462 0.00 0.00 0.00 2.41
386 387 6.525578 AGTATGACACCGAGATTCTACAAA 57.474 37.500 0.00 0.00 0.00 2.83
569 601 9.513727 GAGGCAAAAATCTAATCAATTCTTCTC 57.486 33.333 0.00 0.00 0.00 2.87
696 730 6.966066 GGTGTGAAAATTGGATTTTTGTTGTG 59.034 34.615 0.73 0.00 42.15 3.33
813 885 0.185901 TTCTGCAAGGAGGCTGGTTT 59.814 50.000 0.00 0.00 33.99 3.27
1074 6253 3.640967 GGAGATTACAGTCAGAGGCTGAT 59.359 47.826 5.53 0.00 42.73 2.90
1083 6262 0.396060 CAGAGGCTGATAGGGAAGGC 59.604 60.000 0.00 0.00 39.18 4.35
1512 6809 4.641094 TCTCCTAGATTCGTGAAGGTTCTC 59.359 45.833 0.00 0.00 0.00 2.87
1641 6940 0.677288 AGATGTCGTTTCACGGTGGA 59.323 50.000 8.50 0.00 42.81 4.02
1656 6955 0.883833 GTGGACCATCTGCACCTTTG 59.116 55.000 0.00 0.00 35.19 2.77
2058 7454 0.677731 CTCCCGCTGATTTCTTGCCA 60.678 55.000 0.00 0.00 0.00 4.92
2094 7490 1.521450 TTCGTCTCTCACACCCGGAC 61.521 60.000 0.73 0.00 0.00 4.79
2129 7525 3.463048 AGAAAGATCCCTTGCCACAAT 57.537 42.857 0.00 0.00 31.91 2.71
2316 7753 1.020861 TAGGTGCACATCAAGCTGCG 61.021 55.000 20.43 0.00 36.08 5.18
2440 8303 9.820229 CATGAACTAGATTAAAGCAAACGTTAA 57.180 29.630 0.00 0.00 34.84 2.01
2520 8859 0.536460 GTCTGCCGTTTTCCTTCCCA 60.536 55.000 0.00 0.00 0.00 4.37
3180 9535 6.705302 TCTGTTGAGATTGCCATATCCTATC 58.295 40.000 0.00 0.00 0.00 2.08
3245 9600 7.152290 CACATTTGCATCCGTTACATATTTG 57.848 36.000 0.00 0.00 0.00 2.32
3479 9834 2.528673 TGATGATTGTTGGCATGGGA 57.471 45.000 0.00 0.00 0.00 4.37
3780 10156 4.849310 GCGCGCACAAGGGGGATA 62.849 66.667 29.10 0.00 42.25 2.59
3940 10474 3.696898 CGAGCTAGTACTGAACCATGAC 58.303 50.000 5.39 0.00 0.00 3.06
3988 10522 1.292223 ACACCGATGTCCTTGTCCG 59.708 57.895 0.00 0.00 31.55 4.79
4032 10566 1.310933 GGCCTGCAACATGTCTCCAG 61.311 60.000 0.00 6.12 0.00 3.86
4035 10569 2.249557 CTGCAACATGTCTCCAGCGC 62.250 60.000 0.00 0.00 0.00 5.92
4085 10620 3.570550 ACCCTCTACTGCATCGATTCTAC 59.429 47.826 0.00 0.00 0.00 2.59
4087 10622 4.083003 CCCTCTACTGCATCGATTCTACTC 60.083 50.000 0.00 0.00 0.00 2.59
4088 10623 4.083003 CCTCTACTGCATCGATTCTACTCC 60.083 50.000 0.00 0.00 0.00 3.85
4089 10624 3.821600 TCTACTGCATCGATTCTACTCCC 59.178 47.826 0.00 0.00 0.00 4.30
4090 10625 2.672098 ACTGCATCGATTCTACTCCCT 58.328 47.619 0.00 0.00 0.00 4.20
4092 10627 1.964223 TGCATCGATTCTACTCCCTCC 59.036 52.381 0.00 0.00 0.00 4.30
4093 10628 1.068194 GCATCGATTCTACTCCCTCCG 60.068 57.143 0.00 0.00 0.00 4.63
4094 10629 2.231529 CATCGATTCTACTCCCTCCGT 58.768 52.381 0.00 0.00 0.00 4.69
4095 10630 1.964552 TCGATTCTACTCCCTCCGTC 58.035 55.000 0.00 0.00 0.00 4.79
4096 10631 1.489649 TCGATTCTACTCCCTCCGTCT 59.510 52.381 0.00 0.00 0.00 4.18
4097 10632 1.874872 CGATTCTACTCCCTCCGTCTC 59.125 57.143 0.00 0.00 0.00 3.36
4098 10633 2.232399 GATTCTACTCCCTCCGTCTCC 58.768 57.143 0.00 0.00 0.00 3.71
4099 10634 0.107312 TTCTACTCCCTCCGTCTCCG 60.107 60.000 0.00 0.00 0.00 4.63
4100 10635 1.224039 CTACTCCCTCCGTCTCCGT 59.776 63.158 0.00 0.00 0.00 4.69
4101 10636 0.394080 CTACTCCCTCCGTCTCCGTT 60.394 60.000 0.00 0.00 0.00 4.44
4102 10637 0.393537 TACTCCCTCCGTCTCCGTTC 60.394 60.000 0.00 0.00 0.00 3.95
4103 10638 2.362120 TCCCTCCGTCTCCGTTCC 60.362 66.667 0.00 0.00 0.00 3.62
4104 10639 2.362632 CCCTCCGTCTCCGTTCCT 60.363 66.667 0.00 0.00 0.00 3.36
4105 10640 1.077212 CCCTCCGTCTCCGTTCCTA 60.077 63.158 0.00 0.00 0.00 2.94
4106 10641 0.682209 CCCTCCGTCTCCGTTCCTAA 60.682 60.000 0.00 0.00 0.00 2.69
4107 10642 1.180029 CCTCCGTCTCCGTTCCTAAA 58.820 55.000 0.00 0.00 0.00 1.85
4108 10643 1.755380 CCTCCGTCTCCGTTCCTAAAT 59.245 52.381 0.00 0.00 0.00 1.40
4109 10644 2.954318 CCTCCGTCTCCGTTCCTAAATA 59.046 50.000 0.00 0.00 0.00 1.40
4110 10645 3.573110 CCTCCGTCTCCGTTCCTAAATAT 59.427 47.826 0.00 0.00 0.00 1.28
4111 10646 4.763793 CCTCCGTCTCCGTTCCTAAATATA 59.236 45.833 0.00 0.00 0.00 0.86
4112 10647 5.106237 CCTCCGTCTCCGTTCCTAAATATAG 60.106 48.000 0.00 0.00 0.00 1.31
4148 10683 8.475331 AGATTTTAACAAGTGACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
4149 10684 8.308931 AGATTTTAACAAGTGACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
4150 10685 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
4151 10686 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4152 10687 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4153 10688 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4154 10689 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4155 10690 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4156 10691 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4157 10692 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4158 10693 4.630069 GTGACTACATACGGAGCAAAATGT 59.370 41.667 0.00 0.00 36.56 2.71
4159 10694 4.629634 TGACTACATACGGAGCAAAATGTG 59.370 41.667 0.00 0.00 34.54 3.21
4160 10695 4.575885 ACTACATACGGAGCAAAATGTGT 58.424 39.130 0.00 0.00 34.54 3.72
4161 10696 3.829886 ACATACGGAGCAAAATGTGTG 57.170 42.857 0.00 0.00 31.56 3.82
4162 10697 3.407698 ACATACGGAGCAAAATGTGTGA 58.592 40.909 0.00 0.00 31.56 3.58
4163 10698 3.818210 ACATACGGAGCAAAATGTGTGAA 59.182 39.130 0.00 0.00 31.56 3.18
4164 10699 4.458989 ACATACGGAGCAAAATGTGTGAAT 59.541 37.500 0.00 0.00 31.56 2.57
4165 10700 3.559238 ACGGAGCAAAATGTGTGAATC 57.441 42.857 0.00 0.00 0.00 2.52
4166 10701 3.149196 ACGGAGCAAAATGTGTGAATCT 58.851 40.909 0.00 0.00 0.00 2.40
4167 10702 4.323417 ACGGAGCAAAATGTGTGAATCTA 58.677 39.130 0.00 0.00 0.00 1.98
4168 10703 4.154195 ACGGAGCAAAATGTGTGAATCTAC 59.846 41.667 0.00 0.00 0.00 2.59
4169 10704 4.154015 CGGAGCAAAATGTGTGAATCTACA 59.846 41.667 0.00 0.00 0.00 2.74
4213 10748 7.962964 ACATCCGTATATGGTAGTTCATTTG 57.037 36.000 10.85 0.34 0.00 2.32
4214 10749 7.732025 ACATCCGTATATGGTAGTTCATTTGA 58.268 34.615 10.85 0.00 0.00 2.69
4215 10750 8.208224 ACATCCGTATATGGTAGTTCATTTGAA 58.792 33.333 10.85 0.00 0.00 2.69
4216 10751 9.051679 CATCCGTATATGGTAGTTCATTTGAAA 57.948 33.333 10.85 0.00 35.58 2.69
4217 10752 9.793259 ATCCGTATATGGTAGTTCATTTGAAAT 57.207 29.630 10.85 0.00 35.58 2.17
4218 10753 9.268268 TCCGTATATGGTAGTTCATTTGAAATC 57.732 33.333 10.85 0.00 35.58 2.17
4219 10754 9.273016 CCGTATATGGTAGTTCATTTGAAATCT 57.727 33.333 2.46 0.00 35.58 2.40
4249 10784 8.904099 AAAGACATATATTTTAGAACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
4250 10785 7.850935 AGACATATATTTTAGAACGGAGGGA 57.149 36.000 0.00 0.00 0.00 4.20
4251 10786 7.897864 AGACATATATTTTAGAACGGAGGGAG 58.102 38.462 0.00 0.00 0.00 4.30
4252 10787 7.509659 AGACATATATTTTAGAACGGAGGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
4253 10788 8.716674 ACATATATTTTAGAACGGAGGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
4254 10789 8.804204 ACATATATTTTAGAACGGAGGGAGTAG 58.196 37.037 0.00 0.00 0.00 2.57
4255 10790 8.804204 CATATATTTTAGAACGGAGGGAGTAGT 58.196 37.037 0.00 0.00 0.00 2.73
4301 10853 3.657015 ATCTATCTGTGCTGTGATCGG 57.343 47.619 0.00 0.00 0.00 4.18
4352 10904 1.534959 AGCCTCTGTGTCTCAGGCA 60.535 57.895 11.63 0.00 43.76 4.75
4504 11057 0.749049 TCCAGATGCTCGATGTCAGG 59.251 55.000 0.00 0.00 0.00 3.86
4615 11172 2.124570 CCATTGCCCCCAGAGACG 60.125 66.667 0.00 0.00 0.00 4.18
4618 11175 2.670148 ATTGCCCCCAGAGACGGAC 61.670 63.158 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.208686 GTACCAGGCGCCGGAGAG 62.209 72.222 33.94 19.30 0.00 3.20
25 26 4.077184 TTGTACCAGGCGCCGGAG 62.077 66.667 33.94 23.71 0.00 4.63
26 27 4.382320 GTTGTACCAGGCGCCGGA 62.382 66.667 33.94 19.51 0.00 5.14
29 30 4.692475 ACGGTTGTACCAGGCGCC 62.692 66.667 21.89 21.89 38.47 6.53
30 31 3.116531 GACGGTTGTACCAGGCGC 61.117 66.667 0.00 0.00 38.47 6.53
31 32 0.173935 TATGACGGTTGTACCAGGCG 59.826 55.000 0.00 0.00 38.47 5.52
32 33 2.210116 CATATGACGGTTGTACCAGGC 58.790 52.381 0.00 0.00 38.47 4.85
33 34 2.210116 GCATATGACGGTTGTACCAGG 58.790 52.381 6.97 0.00 38.47 4.45
34 35 2.158957 AGGCATATGACGGTTGTACCAG 60.159 50.000 6.97 0.00 38.47 4.00
35 36 1.834896 AGGCATATGACGGTTGTACCA 59.165 47.619 6.97 0.00 38.47 3.25
36 37 2.210116 CAGGCATATGACGGTTGTACC 58.790 52.381 6.97 0.00 34.05 3.34
37 38 1.597663 GCAGGCATATGACGGTTGTAC 59.402 52.381 10.56 0.00 0.00 2.90
38 39 1.474320 GGCAGGCATATGACGGTTGTA 60.474 52.381 10.56 0.00 0.00 2.41
39 40 0.748005 GGCAGGCATATGACGGTTGT 60.748 55.000 10.56 0.00 0.00 3.32
40 41 2.024918 GGCAGGCATATGACGGTTG 58.975 57.895 10.56 1.20 0.00 3.77
41 42 4.559502 GGCAGGCATATGACGGTT 57.440 55.556 10.56 0.00 0.00 4.44
60 61 4.899239 GGAGTCGGGCGCAGATGG 62.899 72.222 10.83 0.00 0.00 3.51
61 62 4.899239 GGGAGTCGGGCGCAGATG 62.899 72.222 10.83 0.00 0.00 2.90
68 69 4.097361 GACAAGGGGGAGTCGGGC 62.097 72.222 0.00 0.00 0.00 6.13
72 73 1.605971 GAGGTCGACAAGGGGGAGTC 61.606 65.000 18.91 0.00 0.00 3.36
73 74 1.609794 GAGGTCGACAAGGGGGAGT 60.610 63.158 18.91 0.00 0.00 3.85
74 75 2.711922 CGAGGTCGACAAGGGGGAG 61.712 68.421 18.91 0.00 43.02 4.30
75 76 2.678934 CGAGGTCGACAAGGGGGA 60.679 66.667 18.91 0.00 43.02 4.81
76 77 2.995574 ACGAGGTCGACAAGGGGG 60.996 66.667 18.91 2.46 43.02 5.40
77 78 2.572284 GACGAGGTCGACAAGGGG 59.428 66.667 18.91 3.92 43.02 4.79
78 79 1.935327 GAGGACGAGGTCGACAAGGG 61.935 65.000 18.91 5.76 43.02 3.95
79 80 1.507174 GAGGACGAGGTCGACAAGG 59.493 63.158 18.91 7.64 43.02 3.61
80 81 1.134901 CGAGGACGAGGTCGACAAG 59.865 63.158 18.91 10.11 43.02 3.16
81 82 1.301953 TCGAGGACGAGGTCGACAA 60.302 57.895 18.91 0.00 43.81 3.18
82 83 2.344872 TCGAGGACGAGGTCGACA 59.655 61.111 18.91 0.00 43.81 4.35
90 91 2.257371 CGCAAACCTCGAGGACGA 59.743 61.111 37.69 0.00 46.56 4.20
91 92 2.087009 GTCGCAAACCTCGAGGACG 61.087 63.158 37.69 29.72 36.56 4.79
92 93 2.087009 CGTCGCAAACCTCGAGGAC 61.087 63.158 37.69 21.94 42.33 3.85
93 94 2.257371 CGTCGCAAACCTCGAGGA 59.743 61.111 37.69 11.69 42.33 3.71
94 95 3.479269 GCGTCGCAAACCTCGAGG 61.479 66.667 30.11 30.11 42.54 4.63
95 96 3.479269 GGCGTCGCAAACCTCGAG 61.479 66.667 20.50 5.13 36.56 4.04
140 141 3.530910 AAGAAGGACGGTGGCGGTG 62.531 63.158 0.00 0.00 0.00 4.94
141 142 3.239253 AAGAAGGACGGTGGCGGT 61.239 61.111 0.00 0.00 0.00 5.68
142 143 2.742372 CAAGAAGGACGGTGGCGG 60.742 66.667 0.00 0.00 0.00 6.13
143 144 1.566018 GAACAAGAAGGACGGTGGCG 61.566 60.000 0.00 0.00 0.00 5.69
144 145 1.235281 GGAACAAGAAGGACGGTGGC 61.235 60.000 0.00 0.00 0.00 5.01
145 146 0.605589 GGGAACAAGAAGGACGGTGG 60.606 60.000 0.00 0.00 0.00 4.61
146 147 0.605589 GGGGAACAAGAAGGACGGTG 60.606 60.000 0.00 0.00 0.00 4.94
147 148 0.767060 AGGGGAACAAGAAGGACGGT 60.767 55.000 0.00 0.00 0.00 4.83
148 149 0.036294 GAGGGGAACAAGAAGGACGG 60.036 60.000 0.00 0.00 0.00 4.79
149 150 0.977395 AGAGGGGAACAAGAAGGACG 59.023 55.000 0.00 0.00 0.00 4.79
150 151 1.279558 GGAGAGGGGAACAAGAAGGAC 59.720 57.143 0.00 0.00 0.00 3.85
151 152 1.132527 TGGAGAGGGGAACAAGAAGGA 60.133 52.381 0.00 0.00 0.00 3.36
152 153 1.003696 GTGGAGAGGGGAACAAGAAGG 59.996 57.143 0.00 0.00 0.00 3.46
153 154 1.003696 GGTGGAGAGGGGAACAAGAAG 59.996 57.143 0.00 0.00 0.00 2.85
154 155 1.064825 GGTGGAGAGGGGAACAAGAA 58.935 55.000 0.00 0.00 0.00 2.52
155 156 0.193574 AGGTGGAGAGGGGAACAAGA 59.806 55.000 0.00 0.00 0.00 3.02
156 157 1.068121 AAGGTGGAGAGGGGAACAAG 58.932 55.000 0.00 0.00 0.00 3.16
157 158 1.529744 AAAGGTGGAGAGGGGAACAA 58.470 50.000 0.00 0.00 0.00 2.83
158 159 1.529744 AAAAGGTGGAGAGGGGAACA 58.470 50.000 0.00 0.00 0.00 3.18
159 160 2.910977 TCTAAAAGGTGGAGAGGGGAAC 59.089 50.000 0.00 0.00 0.00 3.62
160 161 2.910977 GTCTAAAAGGTGGAGAGGGGAA 59.089 50.000 0.00 0.00 0.00 3.97
161 162 2.547990 GTCTAAAAGGTGGAGAGGGGA 58.452 52.381 0.00 0.00 0.00 4.81
162 163 1.207329 CGTCTAAAAGGTGGAGAGGGG 59.793 57.143 0.00 0.00 0.00 4.79
163 164 2.166664 CTCGTCTAAAAGGTGGAGAGGG 59.833 54.545 0.00 0.00 0.00 4.30
164 165 3.090037 TCTCGTCTAAAAGGTGGAGAGG 58.910 50.000 0.00 0.00 0.00 3.69
165 166 3.426426 CGTCTCGTCTAAAAGGTGGAGAG 60.426 52.174 0.00 0.00 31.78 3.20
166 167 2.486982 CGTCTCGTCTAAAAGGTGGAGA 59.513 50.000 0.00 0.00 0.00 3.71
167 168 2.415625 CCGTCTCGTCTAAAAGGTGGAG 60.416 54.545 0.00 0.00 0.00 3.86
168 169 1.542915 CCGTCTCGTCTAAAAGGTGGA 59.457 52.381 0.00 0.00 0.00 4.02
169 170 1.403780 CCCGTCTCGTCTAAAAGGTGG 60.404 57.143 0.00 0.00 0.00 4.61
170 171 1.542915 TCCCGTCTCGTCTAAAAGGTG 59.457 52.381 0.00 0.00 0.00 4.00
171 172 1.915141 TCCCGTCTCGTCTAAAAGGT 58.085 50.000 0.00 0.00 0.00 3.50
172 173 3.445857 GAATCCCGTCTCGTCTAAAAGG 58.554 50.000 0.00 0.00 0.00 3.11
173 174 3.106672 CGAATCCCGTCTCGTCTAAAAG 58.893 50.000 0.00 0.00 0.00 2.27
174 175 2.749076 TCGAATCCCGTCTCGTCTAAAA 59.251 45.455 0.00 0.00 39.75 1.52
175 176 2.096496 GTCGAATCCCGTCTCGTCTAAA 59.904 50.000 0.00 0.00 39.75 1.85
176 177 1.667724 GTCGAATCCCGTCTCGTCTAA 59.332 52.381 0.00 0.00 39.75 2.10
177 178 1.134580 AGTCGAATCCCGTCTCGTCTA 60.135 52.381 0.00 0.00 39.75 2.59
178 179 0.392729 AGTCGAATCCCGTCTCGTCT 60.393 55.000 0.00 0.00 39.75 4.18
179 180 1.293924 TAGTCGAATCCCGTCTCGTC 58.706 55.000 0.00 0.00 37.74 4.20
180 181 1.399791 GTTAGTCGAATCCCGTCTCGT 59.600 52.381 0.00 0.00 37.74 4.18
181 182 1.399440 TGTTAGTCGAATCCCGTCTCG 59.601 52.381 0.00 0.00 37.74 4.04
182 183 3.498927 TTGTTAGTCGAATCCCGTCTC 57.501 47.619 0.00 0.00 37.74 3.36
183 184 4.081862 TGAATTGTTAGTCGAATCCCGTCT 60.082 41.667 0.00 0.00 39.74 4.18
184 185 4.032558 GTGAATTGTTAGTCGAATCCCGTC 59.967 45.833 0.00 0.00 39.75 4.79
185 186 3.930848 GTGAATTGTTAGTCGAATCCCGT 59.069 43.478 0.00 0.00 39.75 5.28
186 187 3.930229 TGTGAATTGTTAGTCGAATCCCG 59.070 43.478 0.00 0.00 40.25 5.14
187 188 5.673818 GCTTGTGAATTGTTAGTCGAATCCC 60.674 44.000 0.00 0.00 0.00 3.85
188 189 5.122396 AGCTTGTGAATTGTTAGTCGAATCC 59.878 40.000 0.00 0.00 0.00 3.01
189 190 6.170675 AGCTTGTGAATTGTTAGTCGAATC 57.829 37.500 0.00 0.00 0.00 2.52
190 191 5.122396 GGAGCTTGTGAATTGTTAGTCGAAT 59.878 40.000 0.00 0.00 0.00 3.34
191 192 4.451096 GGAGCTTGTGAATTGTTAGTCGAA 59.549 41.667 0.00 0.00 0.00 3.71
192 193 3.994392 GGAGCTTGTGAATTGTTAGTCGA 59.006 43.478 0.00 0.00 0.00 4.20
193 194 3.125316 GGGAGCTTGTGAATTGTTAGTCG 59.875 47.826 0.00 0.00 0.00 4.18
194 195 4.327680 AGGGAGCTTGTGAATTGTTAGTC 58.672 43.478 0.00 0.00 0.00 2.59
195 196 4.042187 AGAGGGAGCTTGTGAATTGTTAGT 59.958 41.667 0.00 0.00 0.00 2.24
196 197 4.583871 AGAGGGAGCTTGTGAATTGTTAG 58.416 43.478 0.00 0.00 0.00 2.34
197 198 4.565652 GGAGAGGGAGCTTGTGAATTGTTA 60.566 45.833 0.00 0.00 0.00 2.41
198 199 3.416156 GAGAGGGAGCTTGTGAATTGTT 58.584 45.455 0.00 0.00 0.00 2.83
199 200 2.290577 GGAGAGGGAGCTTGTGAATTGT 60.291 50.000 0.00 0.00 0.00 2.71
200 201 2.363683 GGAGAGGGAGCTTGTGAATTG 58.636 52.381 0.00 0.00 0.00 2.32
201 202 1.283321 GGGAGAGGGAGCTTGTGAATT 59.717 52.381 0.00 0.00 0.00 2.17
202 203 0.915364 GGGAGAGGGAGCTTGTGAAT 59.085 55.000 0.00 0.00 0.00 2.57
203 204 0.178891 AGGGAGAGGGAGCTTGTGAA 60.179 55.000 0.00 0.00 0.00 3.18
204 205 0.616111 GAGGGAGAGGGAGCTTGTGA 60.616 60.000 0.00 0.00 0.00 3.58
205 206 1.904032 GAGGGAGAGGGAGCTTGTG 59.096 63.158 0.00 0.00 0.00 3.33
206 207 1.684049 CGAGGGAGAGGGAGCTTGT 60.684 63.158 0.00 0.00 0.00 3.16
207 208 3.087666 GCGAGGGAGAGGGAGCTTG 62.088 68.421 0.00 0.00 0.00 4.01
208 209 2.762043 GCGAGGGAGAGGGAGCTT 60.762 66.667 0.00 0.00 0.00 3.74
209 210 4.067512 TGCGAGGGAGAGGGAGCT 62.068 66.667 0.00 0.00 0.00 4.09
210 211 3.535962 CTGCGAGGGAGAGGGAGC 61.536 72.222 0.00 0.00 0.00 4.70
211 212 2.285889 TACCTGCGAGGGAGAGGGAG 62.286 65.000 7.06 0.00 40.58 4.30
212 213 2.314215 TACCTGCGAGGGAGAGGGA 61.314 63.158 7.06 0.00 40.58 4.20
213 214 2.128507 GTACCTGCGAGGGAGAGGG 61.129 68.421 7.06 0.00 40.58 4.30
214 215 2.128507 GGTACCTGCGAGGGAGAGG 61.129 68.421 4.06 0.00 40.58 3.69
215 216 1.076632 AGGTACCTGCGAGGGAGAG 60.077 63.158 15.42 0.00 40.58 3.20
216 217 1.379977 CAGGTACCTGCGAGGGAGA 60.380 63.158 28.48 0.00 40.58 3.71
217 218 3.211288 CAGGTACCTGCGAGGGAG 58.789 66.667 28.48 2.91 40.58 4.30
227 228 3.001406 ACCGAGGTGGCAGGTACC 61.001 66.667 2.73 2.73 43.94 3.34
228 229 2.264794 CACCGAGGTGGCAGGTAC 59.735 66.667 14.19 0.00 43.94 3.34
240 241 1.176619 TGGAGAAGCTCGAACACCGA 61.177 55.000 0.00 0.00 46.35 4.69
241 242 1.009389 GTGGAGAAGCTCGAACACCG 61.009 60.000 0.00 0.00 40.25 4.94
242 243 0.670854 GGTGGAGAAGCTCGAACACC 60.671 60.000 12.82 12.82 41.18 4.16
243 244 0.033504 TGGTGGAGAAGCTCGAACAC 59.966 55.000 0.00 0.00 31.32 3.32
244 245 0.033504 GTGGTGGAGAAGCTCGAACA 59.966 55.000 0.00 0.00 33.74 3.18
245 246 0.670854 GGTGGTGGAGAAGCTCGAAC 60.671 60.000 0.00 0.00 0.00 3.95
246 247 1.671742 GGTGGTGGAGAAGCTCGAA 59.328 57.895 0.00 0.00 0.00 3.71
247 248 2.636412 CGGTGGTGGAGAAGCTCGA 61.636 63.158 0.00 0.00 0.00 4.04
248 249 2.125912 CGGTGGTGGAGAAGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
249 250 2.435059 GCGGTGGTGGAGAAGCTC 60.435 66.667 0.00 0.00 0.00 4.09
250 251 2.925170 AGCGGTGGTGGAGAAGCT 60.925 61.111 0.00 0.00 0.00 3.74
251 252 2.435059 GAGCGGTGGTGGAGAAGC 60.435 66.667 0.00 0.00 0.00 3.86
252 253 2.266055 GGAGCGGTGGTGGAGAAG 59.734 66.667 0.00 0.00 0.00 2.85
253 254 3.319198 GGGAGCGGTGGTGGAGAA 61.319 66.667 0.00 0.00 0.00 2.87
254 255 4.316823 AGGGAGCGGTGGTGGAGA 62.317 66.667 0.00 0.00 0.00 3.71
255 256 4.087892 CAGGGAGCGGTGGTGGAG 62.088 72.222 0.00 0.00 0.00 3.86
258 259 3.402681 ATCCAGGGAGCGGTGGTG 61.403 66.667 0.00 0.00 35.14 4.17
259 260 3.402681 CATCCAGGGAGCGGTGGT 61.403 66.667 0.00 0.00 35.14 4.16
260 261 3.083349 TCATCCAGGGAGCGGTGG 61.083 66.667 0.00 0.00 34.87 4.61
261 262 2.503061 CTCATCCAGGGAGCGGTG 59.497 66.667 0.00 0.00 0.00 4.94
271 272 2.265739 GCACGTCTGGCTCATCCA 59.734 61.111 0.00 0.00 44.18 3.41
272 273 2.887568 CGCACGTCTGGCTCATCC 60.888 66.667 0.00 0.00 0.00 3.51
273 274 2.125912 ACGCACGTCTGGCTCATC 60.126 61.111 0.00 0.00 0.00 2.92
274 275 2.125912 GACGCACGTCTGGCTCAT 60.126 61.111 15.56 0.00 41.57 2.90
275 276 4.700365 CGACGCACGTCTGGCTCA 62.700 66.667 19.74 0.00 42.54 4.26
293 294 3.340721 CTTGTTGAGCGCGACGAGC 62.341 63.158 16.21 16.21 43.95 5.03
294 295 2.720758 CCTTGTTGAGCGCGACGAG 61.721 63.158 12.10 16.23 38.98 4.18
295 296 2.733218 CCTTGTTGAGCGCGACGA 60.733 61.111 12.10 0.00 0.00 4.20
296 297 2.733218 TCCTTGTTGAGCGCGACG 60.733 61.111 12.10 0.00 0.00 5.12
297 298 2.853914 GTCCTTGTTGAGCGCGAC 59.146 61.111 12.10 2.99 0.00 5.19
298 299 2.733218 CGTCCTTGTTGAGCGCGA 60.733 61.111 12.10 0.00 0.00 5.87
299 300 2.733218 TCGTCCTTGTTGAGCGCG 60.733 61.111 0.00 0.00 0.00 6.86
300 301 2.668280 GGTCGTCCTTGTTGAGCGC 61.668 63.158 0.00 0.00 0.00 5.92
301 302 1.006102 AGGTCGTCCTTGTTGAGCG 60.006 57.895 0.00 0.00 42.12 5.03
302 303 0.249911 ACAGGTCGTCCTTGTTGAGC 60.250 55.000 0.00 0.00 43.07 4.26
303 304 1.202533 ACACAGGTCGTCCTTGTTGAG 60.203 52.381 0.00 0.00 43.07 3.02
304 305 0.828022 ACACAGGTCGTCCTTGTTGA 59.172 50.000 0.00 0.00 43.07 3.18
305 306 0.937304 CACACAGGTCGTCCTTGTTG 59.063 55.000 0.00 0.00 43.07 3.33
306 307 0.179056 CCACACAGGTCGTCCTTGTT 60.179 55.000 0.00 0.00 43.07 2.83
307 308 1.445942 CCACACAGGTCGTCCTTGT 59.554 57.895 0.00 4.77 43.07 3.16
308 309 1.301716 CCCACACAGGTCGTCCTTG 60.302 63.158 0.00 4.15 43.07 3.61
309 310 1.458777 TCCCACACAGGTCGTCCTT 60.459 57.895 0.00 0.00 43.07 3.36
310 311 1.908793 CTCCCACACAGGTCGTCCT 60.909 63.158 0.00 0.00 46.37 3.85
311 312 2.657237 CTCCCACACAGGTCGTCC 59.343 66.667 0.00 0.00 34.66 4.79
312 313 2.048127 GCTCCCACACAGGTCGTC 60.048 66.667 0.00 0.00 34.66 4.20
313 314 1.696097 AAAGCTCCCACACAGGTCGT 61.696 55.000 0.00 0.00 34.66 4.34
314 315 0.951040 GAAAGCTCCCACACAGGTCG 60.951 60.000 0.00 0.00 34.66 4.79
315 316 0.108585 TGAAAGCTCCCACACAGGTC 59.891 55.000 0.00 0.00 34.66 3.85
316 317 0.550914 TTGAAAGCTCCCACACAGGT 59.449 50.000 0.00 0.00 34.66 4.00
317 318 0.954452 GTTGAAAGCTCCCACACAGG 59.046 55.000 0.00 0.00 37.03 4.00
318 319 1.334869 GTGTTGAAAGCTCCCACACAG 59.665 52.381 14.51 0.00 35.90 3.66
319 320 1.064758 AGTGTTGAAAGCTCCCACACA 60.065 47.619 18.88 10.44 37.28 3.72
320 321 1.334869 CAGTGTTGAAAGCTCCCACAC 59.665 52.381 12.59 12.59 36.00 3.82
321 322 1.064758 ACAGTGTTGAAAGCTCCCACA 60.065 47.619 0.00 0.00 0.00 4.17
322 323 1.334869 CACAGTGTTGAAAGCTCCCAC 59.665 52.381 0.00 0.00 0.00 4.61
323 324 1.064758 ACACAGTGTTGAAAGCTCCCA 60.065 47.619 0.00 0.00 0.00 4.37
324 325 1.680338 ACACAGTGTTGAAAGCTCCC 58.320 50.000 0.00 0.00 0.00 4.30
325 326 2.221055 CGTACACAGTGTTGAAAGCTCC 59.779 50.000 12.53 0.00 0.00 4.70
326 327 2.348591 GCGTACACAGTGTTGAAAGCTC 60.349 50.000 12.53 0.00 0.00 4.09
327 328 1.597663 GCGTACACAGTGTTGAAAGCT 59.402 47.619 12.53 0.00 0.00 3.74
328 329 1.333791 GGCGTACACAGTGTTGAAAGC 60.334 52.381 12.53 7.88 0.00 3.51
329 330 1.263217 GGGCGTACACAGTGTTGAAAG 59.737 52.381 12.53 0.00 0.00 2.62
330 331 1.301423 GGGCGTACACAGTGTTGAAA 58.699 50.000 12.53 0.00 0.00 2.69
331 332 0.533308 GGGGCGTACACAGTGTTGAA 60.533 55.000 12.53 0.00 0.00 2.69
332 333 1.070105 GGGGCGTACACAGTGTTGA 59.930 57.895 12.53 0.00 0.00 3.18
333 334 0.534203 AAGGGGCGTACACAGTGTTG 60.534 55.000 12.53 6.38 0.00 3.33
334 335 0.181824 AAAGGGGCGTACACAGTGTT 59.818 50.000 12.53 0.00 0.00 3.32
335 336 0.181824 AAAAGGGGCGTACACAGTGT 59.818 50.000 11.87 11.87 0.00 3.55
336 337 0.872388 GAAAAGGGGCGTACACAGTG 59.128 55.000 0.00 0.00 0.00 3.66
337 338 0.470766 TGAAAAGGGGCGTACACAGT 59.529 50.000 0.00 0.00 0.00 3.55
338 339 1.600023 TTGAAAAGGGGCGTACACAG 58.400 50.000 0.00 0.00 0.00 3.66
339 340 2.156098 GATTGAAAAGGGGCGTACACA 58.844 47.619 0.00 0.00 0.00 3.72
340 341 2.095415 GTGATTGAAAAGGGGCGTACAC 60.095 50.000 0.00 0.00 0.00 2.90
341 342 2.156098 GTGATTGAAAAGGGGCGTACA 58.844 47.619 0.00 0.00 0.00 2.90
342 343 2.156098 TGTGATTGAAAAGGGGCGTAC 58.844 47.619 0.00 0.00 0.00 3.67
343 344 2.570415 TGTGATTGAAAAGGGGCGTA 57.430 45.000 0.00 0.00 0.00 4.42
344 345 1.613437 CTTGTGATTGAAAAGGGGCGT 59.387 47.619 0.00 0.00 0.00 5.68
345 346 1.613437 ACTTGTGATTGAAAAGGGGCG 59.387 47.619 0.00 0.00 0.00 6.13
346 347 4.462483 TCATACTTGTGATTGAAAAGGGGC 59.538 41.667 0.00 0.00 0.00 5.80
347 348 5.476599 TGTCATACTTGTGATTGAAAAGGGG 59.523 40.000 0.00 0.00 0.00 4.79
348 349 6.381801 GTGTCATACTTGTGATTGAAAAGGG 58.618 40.000 0.00 0.00 0.00 3.95
349 350 6.381801 GGTGTCATACTTGTGATTGAAAAGG 58.618 40.000 0.00 0.00 0.00 3.11
350 351 6.073276 TCGGTGTCATACTTGTGATTGAAAAG 60.073 38.462 0.00 0.00 0.00 2.27
351 352 5.760743 TCGGTGTCATACTTGTGATTGAAAA 59.239 36.000 0.00 0.00 0.00 2.29
352 353 5.301555 TCGGTGTCATACTTGTGATTGAAA 58.698 37.500 0.00 0.00 0.00 2.69
353 354 4.888917 TCGGTGTCATACTTGTGATTGAA 58.111 39.130 0.00 0.00 0.00 2.69
354 355 4.219725 TCTCGGTGTCATACTTGTGATTGA 59.780 41.667 0.00 0.00 0.00 2.57
355 356 4.494484 TCTCGGTGTCATACTTGTGATTG 58.506 43.478 0.00 0.00 0.00 2.67
356 357 4.801330 TCTCGGTGTCATACTTGTGATT 57.199 40.909 0.00 0.00 0.00 2.57
357 358 5.127845 AGAATCTCGGTGTCATACTTGTGAT 59.872 40.000 0.00 0.00 0.00 3.06
358 359 4.462834 AGAATCTCGGTGTCATACTTGTGA 59.537 41.667 0.00 0.00 0.00 3.58
359 360 4.748892 AGAATCTCGGTGTCATACTTGTG 58.251 43.478 0.00 0.00 0.00 3.33
360 361 5.417894 TGTAGAATCTCGGTGTCATACTTGT 59.582 40.000 0.00 0.00 0.00 3.16
361 362 5.891451 TGTAGAATCTCGGTGTCATACTTG 58.109 41.667 0.00 0.00 0.00 3.16
362 363 6.525578 TTGTAGAATCTCGGTGTCATACTT 57.474 37.500 0.00 0.00 0.00 2.24
363 364 6.071560 TGTTTGTAGAATCTCGGTGTCATACT 60.072 38.462 0.00 0.00 0.00 2.12
364 365 6.097356 TGTTTGTAGAATCTCGGTGTCATAC 58.903 40.000 0.00 0.00 0.00 2.39
365 366 6.152154 TCTGTTTGTAGAATCTCGGTGTCATA 59.848 38.462 0.00 0.00 0.00 2.15
366 367 5.047306 TCTGTTTGTAGAATCTCGGTGTCAT 60.047 40.000 0.00 0.00 0.00 3.06
367 368 4.279922 TCTGTTTGTAGAATCTCGGTGTCA 59.720 41.667 0.00 0.00 0.00 3.58
368 369 4.806330 TCTGTTTGTAGAATCTCGGTGTC 58.194 43.478 0.00 0.00 0.00 3.67
369 370 4.866508 TCTGTTTGTAGAATCTCGGTGT 57.133 40.909 0.00 0.00 0.00 4.16
370 371 5.749109 GGTATCTGTTTGTAGAATCTCGGTG 59.251 44.000 0.00 0.00 0.00 4.94
371 372 5.421056 TGGTATCTGTTTGTAGAATCTCGGT 59.579 40.000 0.00 0.00 0.00 4.69
372 373 5.902681 TGGTATCTGTTTGTAGAATCTCGG 58.097 41.667 0.00 0.00 0.00 4.63
373 374 7.258441 TCTTGGTATCTGTTTGTAGAATCTCG 58.742 38.462 0.00 0.00 0.00 4.04
374 375 9.436957 TTTCTTGGTATCTGTTTGTAGAATCTC 57.563 33.333 0.00 0.00 0.00 2.75
375 376 9.793259 TTTTCTTGGTATCTGTTTGTAGAATCT 57.207 29.630 0.00 0.00 0.00 2.40
376 377 9.827411 GTTTTCTTGGTATCTGTTTGTAGAATC 57.173 33.333 0.00 0.00 0.00 2.52
377 378 9.349713 TGTTTTCTTGGTATCTGTTTGTAGAAT 57.650 29.630 0.00 0.00 0.00 2.40
378 379 8.740123 TGTTTTCTTGGTATCTGTTTGTAGAA 57.260 30.769 0.00 0.00 0.00 2.10
379 380 8.740123 TTGTTTTCTTGGTATCTGTTTGTAGA 57.260 30.769 0.00 0.00 0.00 2.59
380 381 9.450807 CTTTGTTTTCTTGGTATCTGTTTGTAG 57.549 33.333 0.00 0.00 0.00 2.74
381 382 7.918562 GCTTTGTTTTCTTGGTATCTGTTTGTA 59.081 33.333 0.00 0.00 0.00 2.41
382 383 6.756542 GCTTTGTTTTCTTGGTATCTGTTTGT 59.243 34.615 0.00 0.00 0.00 2.83
383 384 6.200854 GGCTTTGTTTTCTTGGTATCTGTTTG 59.799 38.462 0.00 0.00 0.00 2.93
384 385 6.127196 TGGCTTTGTTTTCTTGGTATCTGTTT 60.127 34.615 0.00 0.00 0.00 2.83
385 386 5.362430 TGGCTTTGTTTTCTTGGTATCTGTT 59.638 36.000 0.00 0.00 0.00 3.16
386 387 4.892934 TGGCTTTGTTTTCTTGGTATCTGT 59.107 37.500 0.00 0.00 0.00 3.41
569 601 1.344763 CAAGGCTACTATCCCTTCCCG 59.655 57.143 0.00 0.00 39.36 5.14
658 692 8.658609 CCAATTTTCACACCATATTTCATGTTC 58.341 33.333 0.00 0.00 0.00 3.18
696 730 4.448060 CCGAGGTTCTACAAACTGAACTTC 59.552 45.833 0.00 0.00 42.22 3.01
813 885 4.232905 CTGGAGGTCCTGGGTTCA 57.767 61.111 0.00 0.00 36.82 3.18
1074 6253 0.546122 ATGCATGAACGCCTTCCCTA 59.454 50.000 0.00 0.00 0.00 3.53
1083 6262 3.538780 CTTTCGCAGATATGCATGAACG 58.461 45.455 13.57 6.29 35.04 3.95
1196 6375 2.957402 ATCAACACAAGGAGGCAAGA 57.043 45.000 0.00 0.00 0.00 3.02
1415 6712 7.590279 ACACTTCCGGTTCAAAAATACTTATG 58.410 34.615 0.00 0.00 0.00 1.90
1512 6809 6.854892 CCGATCTTTATACAAGGTACAGTACG 59.145 42.308 4.58 0.00 0.00 3.67
1641 6940 0.478072 TGGACAAAGGTGCAGATGGT 59.522 50.000 0.00 0.00 40.73 3.55
1656 6955 0.107945 GACTGCTCAGGATGGTGGAC 60.108 60.000 1.66 0.00 36.16 4.02
2016 7345 3.569194 TTTTGTTGGTAGCTGAGGACA 57.431 42.857 0.00 0.00 0.00 4.02
2058 7454 2.368875 ACGAAGTTGATGACCTTGTCCT 59.631 45.455 0.00 0.00 37.78 3.85
2094 7490 3.390135 TCTTTCTTGACGCACTTGTAGG 58.610 45.455 0.00 0.00 0.00 3.18
2520 8859 2.346766 TGCTGGTGTCATGTTCTGTT 57.653 45.000 0.00 0.00 0.00 3.16
3180 9535 3.230134 TCCCCTTGAAAAACATCACCTG 58.770 45.455 0.00 0.00 0.00 4.00
3411 9766 4.003788 CCGGACCTTGCACTCGGT 62.004 66.667 0.00 1.38 36.38 4.69
3479 9834 7.255730 GCTAGATGGCTTATCATCCAATGTTTT 60.256 37.037 0.00 0.00 43.25 2.43
3773 10149 2.124445 GTGCCAACCGTATCCCCC 60.124 66.667 0.00 0.00 0.00 5.40
3940 10474 3.393800 CCGCTGGATAACCAACAGATAG 58.606 50.000 0.00 0.00 46.32 2.08
4018 10552 2.482374 GCGCTGGAGACATGTTGC 59.518 61.111 0.00 0.00 41.51 4.17
4020 10554 1.738099 GACGCGCTGGAGACATGTT 60.738 57.895 5.73 0.00 41.51 2.71
4021 10555 2.125912 GACGCGCTGGAGACATGT 60.126 61.111 5.73 0.00 41.51 3.21
4035 10569 1.517276 GGTAGATTCATTGACGCGACG 59.483 52.381 15.93 0.00 0.00 5.12
4122 10657 8.932791 CCGTATGTAGTCACTTGTTAAAATCTT 58.067 33.333 0.00 0.00 0.00 2.40
4123 10658 8.308931 TCCGTATGTAGTCACTTGTTAAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
4124 10659 8.470040 TCCGTATGTAGTCACTTGTTAAAATC 57.530 34.615 0.00 0.00 0.00 2.17
4125 10660 7.064253 GCTCCGTATGTAGTCACTTGTTAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
4126 10661 6.366877 GCTCCGTATGTAGTCACTTGTTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
4127 10662 5.865552 GCTCCGTATGTAGTCACTTGTTAAA 59.134 40.000 0.00 0.00 0.00 1.52
4128 10663 5.047872 TGCTCCGTATGTAGTCACTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
4129 10664 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
4130 10665 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4131 10666 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4132 10667 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4133 10668 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4134 10669 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4135 10670 4.630069 ACATTTTGCTCCGTATGTAGTCAC 59.370 41.667 0.00 0.00 29.93 3.67
4136 10671 4.629634 CACATTTTGCTCCGTATGTAGTCA 59.370 41.667 0.00 0.00 30.53 3.41
4137 10672 4.630069 ACACATTTTGCTCCGTATGTAGTC 59.370 41.667 0.00 0.00 30.53 2.59
4138 10673 4.391830 CACACATTTTGCTCCGTATGTAGT 59.608 41.667 0.00 0.00 30.53 2.73
4139 10674 4.629634 TCACACATTTTGCTCCGTATGTAG 59.370 41.667 0.00 0.00 30.53 2.74
4140 10675 4.570930 TCACACATTTTGCTCCGTATGTA 58.429 39.130 0.00 0.00 30.53 2.29
4141 10676 3.407698 TCACACATTTTGCTCCGTATGT 58.592 40.909 0.00 0.00 0.00 2.29
4142 10677 4.418013 TTCACACATTTTGCTCCGTATG 57.582 40.909 0.00 0.00 0.00 2.39
4143 10678 4.943705 AGATTCACACATTTTGCTCCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
4144 10679 4.323417 AGATTCACACATTTTGCTCCGTA 58.677 39.130 0.00 0.00 0.00 4.02
4145 10680 3.149196 AGATTCACACATTTTGCTCCGT 58.851 40.909 0.00 0.00 0.00 4.69
4146 10681 3.837213 AGATTCACACATTTTGCTCCG 57.163 42.857 0.00 0.00 0.00 4.63
4147 10682 5.393962 GTGTAGATTCACACATTTTGCTCC 58.606 41.667 11.87 0.00 46.55 4.70
4187 10722 9.653287 CAAATGAACTACCATATACGGATGTAT 57.347 33.333 0.00 0.00 43.62 2.29
4188 10723 8.862085 TCAAATGAACTACCATATACGGATGTA 58.138 33.333 0.00 0.00 34.45 2.29
4189 10724 7.732025 TCAAATGAACTACCATATACGGATGT 58.268 34.615 0.00 0.00 0.00 3.06
4190 10725 8.601845 TTCAAATGAACTACCATATACGGATG 57.398 34.615 0.00 0.00 0.00 3.51
4191 10726 9.793259 ATTTCAAATGAACTACCATATACGGAT 57.207 29.630 0.00 0.00 33.13 4.18
4192 10727 9.268268 GATTTCAAATGAACTACCATATACGGA 57.732 33.333 0.00 0.00 33.13 4.69
4193 10728 9.273016 AGATTTCAAATGAACTACCATATACGG 57.727 33.333 0.00 0.00 33.13 4.02
4223 10758 9.338622 CCCTCCGTTCTAAAATATATGTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
4224 10759 8.711170 TCCCTCCGTTCTAAAATATATGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
4225 10760 8.258850 TCCCTCCGTTCTAAAATATATGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
4226 10761 7.509659 ACTCCCTCCGTTCTAAAATATATGTCT 59.490 37.037 0.00 0.00 0.00 3.41
4227 10762 7.668492 ACTCCCTCCGTTCTAAAATATATGTC 58.332 38.462 0.00 0.00 0.00 3.06
4228 10763 7.613551 ACTCCCTCCGTTCTAAAATATATGT 57.386 36.000 0.00 0.00 0.00 2.29
4229 10764 8.804204 ACTACTCCCTCCGTTCTAAAATATATG 58.196 37.037 0.00 0.00 0.00 1.78
4230 10765 8.953223 ACTACTCCCTCCGTTCTAAAATATAT 57.047 34.615 0.00 0.00 0.00 0.86
4232 10767 8.953223 ATACTACTCCCTCCGTTCTAAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
4233 10768 9.289782 GTATACTACTCCCTCCGTTCTAAAATA 57.710 37.037 0.00 0.00 0.00 1.40
4234 10769 8.003629 AGTATACTACTCCCTCCGTTCTAAAAT 58.996 37.037 2.75 0.00 32.47 1.82
4235 10770 7.349598 AGTATACTACTCCCTCCGTTCTAAAA 58.650 38.462 2.75 0.00 32.47 1.52
4236 10771 6.904626 AGTATACTACTCCCTCCGTTCTAAA 58.095 40.000 2.75 0.00 32.47 1.85
4237 10772 6.506538 AGTATACTACTCCCTCCGTTCTAA 57.493 41.667 2.75 0.00 32.47 2.10
4238 10773 6.100279 TGAAGTATACTACTCCCTCCGTTCTA 59.900 42.308 5.65 0.00 38.26 2.10
4239 10774 5.104193 TGAAGTATACTACTCCCTCCGTTCT 60.104 44.000 5.65 0.00 38.26 3.01
4240 10775 5.128919 TGAAGTATACTACTCCCTCCGTTC 58.871 45.833 5.65 0.00 38.26 3.95
4241 10776 5.121380 TGAAGTATACTACTCCCTCCGTT 57.879 43.478 5.65 0.00 38.26 4.44
4242 10777 4.785346 TGAAGTATACTACTCCCTCCGT 57.215 45.455 5.65 0.00 38.26 4.69
4243 10778 5.768662 TCAATGAAGTATACTACTCCCTCCG 59.231 44.000 5.65 0.00 38.26 4.63
4244 10779 6.550108 TGTCAATGAAGTATACTACTCCCTCC 59.450 42.308 5.65 0.00 38.26 4.30
4245 10780 7.584122 TGTCAATGAAGTATACTACTCCCTC 57.416 40.000 5.65 0.00 38.26 4.30
4246 10781 7.472100 GCATGTCAATGAAGTATACTACTCCCT 60.472 40.741 5.65 0.00 34.43 4.20
4247 10782 6.647067 GCATGTCAATGAAGTATACTACTCCC 59.353 42.308 5.65 0.00 34.43 4.30
4248 10783 7.210174 TGCATGTCAATGAAGTATACTACTCC 58.790 38.462 5.65 0.00 34.43 3.85
4249 10784 8.706936 CATGCATGTCAATGAAGTATACTACTC 58.293 37.037 18.91 1.56 34.43 2.59
4250 10785 7.172190 GCATGCATGTCAATGAAGTATACTACT 59.828 37.037 26.79 0.00 35.94 2.57
4251 10786 7.041848 TGCATGCATGTCAATGAAGTATACTAC 60.042 37.037 26.79 5.09 35.67 2.73
4252 10787 6.991531 TGCATGCATGTCAATGAAGTATACTA 59.008 34.615 26.79 0.00 35.67 1.82
4253 10788 5.824097 TGCATGCATGTCAATGAAGTATACT 59.176 36.000 26.79 0.00 35.67 2.12
4254 10789 6.063640 TGCATGCATGTCAATGAAGTATAC 57.936 37.500 26.79 6.41 35.67 1.47
4255 10790 6.674066 CATGCATGCATGTCAATGAAGTATA 58.326 36.000 40.30 8.56 46.20 1.47
4256 10791 5.528870 CATGCATGCATGTCAATGAAGTAT 58.471 37.500 40.30 13.05 46.20 2.12
4301 10853 3.885521 GCTGCAGGCAGGCGATTC 61.886 66.667 21.63 1.32 43.77 2.52
4352 10904 2.270434 TTCTCAGGGATGTAAGGCCT 57.730 50.000 0.00 0.00 0.00 5.19
4504 11057 0.531753 AAAACATGGGCCAACAACGC 60.532 50.000 11.89 0.00 0.00 4.84
4590 11147 0.555769 TGGGGGCAATGGACTATTCC 59.444 55.000 0.00 0.00 43.19 3.01
4615 11172 2.191128 ACATGAGCAAGTCAAGGTCC 57.809 50.000 0.00 0.00 39.19 4.46
4618 11175 3.005554 CCACTACATGAGCAAGTCAAGG 58.994 50.000 0.00 0.00 39.19 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.