Multiple sequence alignment - TraesCS5D01G216600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G216600 chr5D 100.000 3950 0 0 1 3950 325662661 325666610 0.000000e+00 7295
1 TraesCS5D01G216600 chr5D 87.512 1009 103 9 2201 3189 326119745 326120750 0.000000e+00 1144
2 TraesCS5D01G216600 chr5D 88.310 941 69 27 714 1634 325646549 325647468 0.000000e+00 1090
3 TraesCS5D01G216600 chr5D 91.437 654 41 3 2217 2856 325648214 325648866 0.000000e+00 883
4 TraesCS5D01G216600 chr5D 91.411 489 37 4 943 1429 326118048 326118533 0.000000e+00 665
5 TraesCS5D01G216600 chr5D 83.516 637 67 23 1001 1621 325422710 325423324 9.590000e-156 560
6 TraesCS5D01G216600 chr5D 86.842 494 41 10 98 584 325902523 325902999 7.520000e-147 531
7 TraesCS5D01G216600 chr5D 85.551 526 42 16 1671 2167 326118853 326119373 1.630000e-143 520
8 TraesCS5D01G216600 chr5D 87.955 440 36 9 1730 2167 325647468 325647892 1.640000e-138 503
9 TraesCS5D01G216600 chr5D 89.137 313 26 8 2894 3201 325652098 325652407 2.230000e-102 383
10 TraesCS5D01G216600 chr5D 89.474 247 15 3 1438 1673 326118579 326118825 6.410000e-78 302
11 TraesCS5D01G216600 chr5D 86.415 265 20 8 407 659 325646210 325646470 3.890000e-70 276
12 TraesCS5D01G216600 chr5D 93.805 113 7 0 2849 2961 325651990 325652102 1.890000e-38 171
13 TraesCS5D01G216600 chr5B 89.512 1764 153 15 2209 3950 378069914 378071667 0.000000e+00 2204
14 TraesCS5D01G216600 chr5B 84.188 1619 156 63 627 2167 377977813 377979409 0.000000e+00 1480
15 TraesCS5D01G216600 chr5B 88.649 1066 73 29 395 1430 378067699 378068746 0.000000e+00 1254
16 TraesCS5D01G216600 chr5B 87.255 1020 105 9 2201 3198 378512185 378513201 0.000000e+00 1140
17 TraesCS5D01G216600 chr5B 89.900 703 58 2 2201 2891 377979603 377980304 0.000000e+00 893
18 TraesCS5D01G216600 chr5B 89.116 735 51 11 943 1651 378510505 378511236 0.000000e+00 887
19 TraesCS5D01G216600 chr5B 91.745 424 27 5 1747 2165 378069142 378069562 2.050000e-162 582
20 TraesCS5D01G216600 chr5B 89.922 387 38 1 3565 3950 311547247 311547633 7.620000e-137 497
21 TraesCS5D01G216600 chr5B 84.528 530 42 19 1670 2167 378511292 378511813 4.590000e-134 488
22 TraesCS5D01G216600 chr5B 95.745 188 7 1 1438 1624 378068790 378068977 6.410000e-78 302
23 TraesCS5D01G216600 chr5B 86.239 218 28 2 1902 2118 377844490 377844706 6.600000e-58 235
24 TraesCS5D01G216600 chr5B 93.798 129 8 0 243 371 377974967 377975095 1.120000e-45 195
25 TraesCS5D01G216600 chr5B 84.000 175 11 6 243 400 378035423 378035597 6.840000e-33 152
26 TraesCS5D01G216600 chr5A 90.776 1507 111 13 1714 3201 431029994 431028497 0.000000e+00 1988
27 TraesCS5D01G216600 chr5A 88.677 1413 77 43 253 1636 430959346 430957988 0.000000e+00 1646
28 TraesCS5D01G216600 chr5A 89.631 1003 89 4 2214 3201 430957174 430956172 0.000000e+00 1262
29 TraesCS5D01G216600 chr5A 87.315 1080 63 22 397 1433 431045705 431044657 0.000000e+00 1168
30 TraesCS5D01G216600 chr5A 87.647 1020 101 9 2201 3198 430506834 430505818 0.000000e+00 1162
31 TraesCS5D01G216600 chr5A 87.875 734 61 16 943 1651 430508514 430507784 0.000000e+00 837
32 TraesCS5D01G216600 chr5A 93.562 466 27 1 1702 2167 430957990 430957528 0.000000e+00 691
33 TraesCS5D01G216600 chr5A 83.840 526 45 22 1674 2167 430507727 430507210 7.730000e-127 464
34 TraesCS5D01G216600 chr5A 95.302 149 6 1 1455 1603 431044608 431044461 6.600000e-58 235
35 TraesCS5D01G216600 chr5A 92.453 159 11 1 243 400 431047602 431047444 3.970000e-55 226
36 TraesCS5D01G216600 chr5A 81.897 232 31 8 1448 1673 666934127 666933901 6.740000e-43 185
37 TraesCS5D01G216600 chr2D 89.691 388 36 3 3565 3949 591268964 591268578 3.550000e-135 492
38 TraesCS5D01G216600 chr2D 89.664 387 39 1 3565 3950 619938229 619938615 3.550000e-135 492
39 TraesCS5D01G216600 chr2D 88.974 390 36 6 3564 3950 579754361 579754746 3.570000e-130 475
40 TraesCS5D01G216600 chr3D 89.175 388 40 2 3565 3950 611554113 611553726 2.130000e-132 483
41 TraesCS5D01G216600 chr3D 89.119 386 38 3 3565 3949 581095638 581096020 9.930000e-131 477
42 TraesCS5D01G216600 chr7D 89.351 385 38 2 3565 3948 182613642 182613260 7.680000e-132 481
43 TraesCS5D01G216600 chr7D 89.119 386 40 2 3565 3949 552277897 552278281 2.760000e-131 479


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G216600 chr5D 325662661 325666610 3949 False 7295.000000 7295 100.000000 1 3950 1 chr5D.!!$F2 3949
1 TraesCS5D01G216600 chr5D 326118048 326120750 2702 False 657.750000 1144 88.487000 943 3189 4 chr5D.!!$F5 2246
2 TraesCS5D01G216600 chr5D 325422710 325423324 614 False 560.000000 560 83.516000 1001 1621 1 chr5D.!!$F1 620
3 TraesCS5D01G216600 chr5D 325646210 325652407 6197 False 551.000000 1090 89.509833 407 3201 6 chr5D.!!$F4 2794
4 TraesCS5D01G216600 chr5B 378067699 378071667 3968 False 1085.500000 2204 91.412750 395 3950 4 chr5B.!!$F5 3555
5 TraesCS5D01G216600 chr5B 377974967 377980304 5337 False 856.000000 1480 89.295333 243 2891 3 chr5B.!!$F4 2648
6 TraesCS5D01G216600 chr5B 378510505 378513201 2696 False 838.333333 1140 86.966333 943 3198 3 chr5B.!!$F6 2255
7 TraesCS5D01G216600 chr5A 431028497 431029994 1497 True 1988.000000 1988 90.776000 1714 3201 1 chr5A.!!$R1 1487
8 TraesCS5D01G216600 chr5A 430956172 430959346 3174 True 1199.666667 1646 90.623333 253 3201 3 chr5A.!!$R4 2948
9 TraesCS5D01G216600 chr5A 430505818 430508514 2696 True 821.000000 1162 86.454000 943 3198 3 chr5A.!!$R3 2255
10 TraesCS5D01G216600 chr5A 431044461 431047602 3141 True 543.000000 1168 91.690000 243 1603 3 chr5A.!!$R5 1360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.178975 TTTTGACCCGGCAATCACCT 60.179 50.0 0.00 0.0 0.0 4.00 F
768 5035 0.178998 GCCAGCCATCACATCATCCT 60.179 55.0 0.00 0.0 0.0 3.24 F
2407 7290 0.249120 CATGACGGGCCACTTGACTA 59.751 55.0 4.39 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 6159 0.802222 CAGATGGCACTCGTACGTGG 60.802 60.0 20.21 14.2 35.47 4.94 R
2745 7628 0.818296 CCACTACCTTGTCCTCCTCG 59.182 60.0 0.00 0.0 0.00 4.63 R
3653 11763 0.235144 CGTCGCTAGATGGTCTACGG 59.765 60.0 0.00 0.0 30.31 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.736414 ATATTTTGTATCTGCTTGATGCTATCT 57.264 29.630 8.96 0.00 43.37 1.98
33 34 7.870509 TTTTGTATCTGCTTGATGCTATCTT 57.129 32.000 8.96 0.00 43.37 2.40
34 35 7.870509 TTTGTATCTGCTTGATGCTATCTTT 57.129 32.000 8.96 0.00 43.37 2.52
35 36 7.870509 TTGTATCTGCTTGATGCTATCTTTT 57.129 32.000 8.96 0.00 43.37 2.27
36 37 8.962884 TTGTATCTGCTTGATGCTATCTTTTA 57.037 30.769 8.96 0.00 43.37 1.52
37 38 8.962884 TGTATCTGCTTGATGCTATCTTTTAA 57.037 30.769 8.96 0.00 43.37 1.52
38 39 9.049523 TGTATCTGCTTGATGCTATCTTTTAAG 57.950 33.333 8.96 0.00 43.37 1.85
39 40 9.265901 GTATCTGCTTGATGCTATCTTTTAAGA 57.734 33.333 0.00 0.00 43.37 2.10
40 41 8.921353 ATCTGCTTGATGCTATCTTTTAAGAT 57.079 30.769 9.70 9.70 42.95 2.40
42 43 9.836864 TCTGCTTGATGCTATCTTTTAAGATAA 57.163 29.630 12.02 1.35 44.82 1.75
63 64 9.233649 AGATAATAAAAACACCCGTTATCAACA 57.766 29.630 0.00 0.00 33.99 3.33
64 65 9.843334 GATAATAAAAACACCCGTTATCAACAA 57.157 29.630 0.00 0.00 33.99 2.83
66 67 8.943909 AATAAAAACACCCGTTATCAACAAAA 57.056 26.923 0.00 0.00 33.99 2.44
67 68 8.943909 ATAAAAACACCCGTTATCAACAAAAA 57.056 26.923 0.00 0.00 33.99 1.94
102 103 7.675962 ATAATGTTTACTCGGTAAAACTGCA 57.324 32.000 9.77 0.00 39.28 4.41
103 104 6.569179 AATGTTTACTCGGTAAAACTGCAT 57.431 33.333 9.77 7.31 39.28 3.96
104 105 7.675962 AATGTTTACTCGGTAAAACTGCATA 57.324 32.000 9.77 0.00 39.28 3.14
105 106 6.470557 TGTTTACTCGGTAAAACTGCATAC 57.529 37.500 9.77 0.00 39.28 2.39
106 107 5.990386 TGTTTACTCGGTAAAACTGCATACA 59.010 36.000 9.77 2.04 39.28 2.29
107 108 6.482641 TGTTTACTCGGTAAAACTGCATACAA 59.517 34.615 9.77 0.00 39.28 2.41
108 109 7.012138 TGTTTACTCGGTAAAACTGCATACAAA 59.988 33.333 9.77 0.00 39.28 2.83
109 110 7.493743 TTACTCGGTAAAACTGCATACAAAA 57.506 32.000 0.00 0.00 0.00 2.44
110 111 5.997385 ACTCGGTAAAACTGCATACAAAAG 58.003 37.500 0.00 0.00 0.00 2.27
111 112 5.529800 ACTCGGTAAAACTGCATACAAAAGT 59.470 36.000 0.00 0.00 0.00 2.66
112 113 6.707161 ACTCGGTAAAACTGCATACAAAAGTA 59.293 34.615 0.00 0.00 0.00 2.24
113 114 7.095355 ACTCGGTAAAACTGCATACAAAAGTAG 60.095 37.037 0.00 0.00 0.00 2.57
114 115 6.707161 TCGGTAAAACTGCATACAAAAGTAGT 59.293 34.615 0.00 0.00 31.88 2.73
115 116 7.871973 TCGGTAAAACTGCATACAAAAGTAGTA 59.128 33.333 0.00 0.00 30.36 1.82
116 117 8.497554 CGGTAAAACTGCATACAAAAGTAGTAA 58.502 33.333 0.00 0.00 30.36 2.24
117 118 9.821662 GGTAAAACTGCATACAAAAGTAGTAAG 57.178 33.333 0.00 0.00 30.36 2.34
118 119 9.326339 GTAAAACTGCATACAAAAGTAGTAAGC 57.674 33.333 0.00 0.00 36.87 3.09
119 120 5.779806 ACTGCATACAAAAGTAGTAAGCG 57.220 39.130 0.00 0.00 38.58 4.68
120 121 5.475719 ACTGCATACAAAAGTAGTAAGCGA 58.524 37.500 0.00 0.00 38.58 4.93
121 122 5.929992 ACTGCATACAAAAGTAGTAAGCGAA 59.070 36.000 0.00 0.00 38.58 4.70
122 123 6.425721 ACTGCATACAAAAGTAGTAAGCGAAA 59.574 34.615 0.00 0.00 38.58 3.46
123 124 7.119262 ACTGCATACAAAAGTAGTAAGCGAAAT 59.881 33.333 0.00 0.00 38.58 2.17
124 125 8.481974 TGCATACAAAAGTAGTAAGCGAAATA 57.518 30.769 0.00 0.00 38.58 1.40
125 126 8.600625 TGCATACAAAAGTAGTAAGCGAAATAG 58.399 33.333 0.00 0.00 38.58 1.73
126 127 8.814235 GCATACAAAAGTAGTAAGCGAAATAGA 58.186 33.333 0.00 0.00 0.00 1.98
129 130 8.240883 ACAAAAGTAGTAAGCGAAATAGACTG 57.759 34.615 0.00 0.00 0.00 3.51
130 131 7.871463 ACAAAAGTAGTAAGCGAAATAGACTGT 59.129 33.333 0.00 0.00 0.00 3.55
131 132 9.350357 CAAAAGTAGTAAGCGAAATAGACTGTA 57.650 33.333 0.00 0.00 0.00 2.74
132 133 9.918630 AAAAGTAGTAAGCGAAATAGACTGTAA 57.081 29.630 0.00 0.00 0.00 2.41
133 134 9.918630 AAAGTAGTAAGCGAAATAGACTGTAAA 57.081 29.630 0.00 0.00 0.00 2.01
134 135 9.918630 AAGTAGTAAGCGAAATAGACTGTAAAA 57.081 29.630 0.00 0.00 0.00 1.52
135 136 9.918630 AGTAGTAAGCGAAATAGACTGTAAAAA 57.081 29.630 0.00 0.00 0.00 1.94
195 196 4.996062 ATGTTTACTCGGTAAAACACGG 57.004 40.909 10.75 0.00 39.28 4.94
196 197 3.791245 TGTTTACTCGGTAAAACACGGT 58.209 40.909 9.77 0.00 39.28 4.83
197 198 4.938080 TGTTTACTCGGTAAAACACGGTA 58.062 39.130 9.77 0.00 39.28 4.02
198 199 5.352284 TGTTTACTCGGTAAAACACGGTAA 58.648 37.500 9.77 0.00 39.28 2.85
199 200 5.233263 TGTTTACTCGGTAAAACACGGTAAC 59.767 40.000 9.77 0.00 39.28 2.50
200 201 3.451141 ACTCGGTAAAACACGGTAACA 57.549 42.857 0.00 0.00 0.00 2.41
201 202 3.791245 ACTCGGTAAAACACGGTAACAA 58.209 40.909 0.00 0.00 0.00 2.83
202 203 4.187694 ACTCGGTAAAACACGGTAACAAA 58.812 39.130 0.00 0.00 0.00 2.83
203 204 4.815846 ACTCGGTAAAACACGGTAACAAAT 59.184 37.500 0.00 0.00 0.00 2.32
204 205 5.988561 ACTCGGTAAAACACGGTAACAAATA 59.011 36.000 0.00 0.00 0.00 1.40
205 206 6.481644 ACTCGGTAAAACACGGTAACAAATAA 59.518 34.615 0.00 0.00 0.00 1.40
206 207 7.173047 ACTCGGTAAAACACGGTAACAAATAAT 59.827 33.333 0.00 0.00 0.00 1.28
207 208 7.869800 TCGGTAAAACACGGTAACAAATAATT 58.130 30.769 0.00 0.00 0.00 1.40
208 209 8.348507 TCGGTAAAACACGGTAACAAATAATTT 58.651 29.630 0.00 0.00 0.00 1.82
209 210 8.966194 CGGTAAAACACGGTAACAAATAATTTT 58.034 29.630 0.00 0.00 0.00 1.82
213 214 7.933728 AACACGGTAACAAATAATTTTGACC 57.066 32.000 5.52 3.13 44.11 4.02
214 215 6.448852 ACACGGTAACAAATAATTTTGACCC 58.551 36.000 5.52 1.99 44.11 4.46
215 216 5.569823 CACGGTAACAAATAATTTTGACCCG 59.430 40.000 17.62 17.62 44.11 5.28
216 217 5.096849 CGGTAACAAATAATTTTGACCCGG 58.903 41.667 0.00 0.00 44.11 5.73
217 218 4.865925 GGTAACAAATAATTTTGACCCGGC 59.134 41.667 0.00 0.00 44.11 6.13
218 219 4.608948 AACAAATAATTTTGACCCGGCA 57.391 36.364 0.00 0.00 44.11 5.69
219 220 4.608948 ACAAATAATTTTGACCCGGCAA 57.391 36.364 0.00 0.00 44.11 4.52
220 221 5.159273 ACAAATAATTTTGACCCGGCAAT 57.841 34.783 0.00 0.00 44.11 3.56
221 222 5.175127 ACAAATAATTTTGACCCGGCAATC 58.825 37.500 0.00 0.00 44.11 2.67
222 223 5.174395 CAAATAATTTTGACCCGGCAATCA 58.826 37.500 0.00 0.00 44.11 2.57
223 224 2.741759 AATTTTGACCCGGCAATCAC 57.258 45.000 0.00 0.00 0.00 3.06
224 225 0.894835 ATTTTGACCCGGCAATCACC 59.105 50.000 0.00 0.00 0.00 4.02
225 226 0.178975 TTTTGACCCGGCAATCACCT 60.179 50.000 0.00 0.00 0.00 4.00
226 227 0.893270 TTTGACCCGGCAATCACCTG 60.893 55.000 0.00 0.00 0.00 4.00
227 228 2.063015 TTGACCCGGCAATCACCTGT 62.063 55.000 0.00 0.00 0.00 4.00
228 229 1.303317 GACCCGGCAATCACCTGTT 60.303 57.895 0.00 0.00 0.00 3.16
229 230 0.893727 GACCCGGCAATCACCTGTTT 60.894 55.000 0.00 0.00 0.00 2.83
230 231 0.469144 ACCCGGCAATCACCTGTTTT 60.469 50.000 0.00 0.00 0.00 2.43
231 232 0.243636 CCCGGCAATCACCTGTTTTC 59.756 55.000 0.00 0.00 0.00 2.29
232 233 1.247567 CCGGCAATCACCTGTTTTCT 58.752 50.000 0.00 0.00 0.00 2.52
233 234 1.613437 CCGGCAATCACCTGTTTTCTT 59.387 47.619 0.00 0.00 0.00 2.52
234 235 2.035832 CCGGCAATCACCTGTTTTCTTT 59.964 45.455 0.00 0.00 0.00 2.52
235 236 3.254657 CCGGCAATCACCTGTTTTCTTTA 59.745 43.478 0.00 0.00 0.00 1.85
236 237 4.261825 CCGGCAATCACCTGTTTTCTTTAA 60.262 41.667 0.00 0.00 0.00 1.52
237 238 4.917415 CGGCAATCACCTGTTTTCTTTAAG 59.083 41.667 0.00 0.00 0.00 1.85
238 239 5.278266 CGGCAATCACCTGTTTTCTTTAAGA 60.278 40.000 0.00 0.00 0.00 2.10
239 240 6.570378 CGGCAATCACCTGTTTTCTTTAAGAT 60.570 38.462 0.00 0.00 0.00 2.40
240 241 7.154656 GGCAATCACCTGTTTTCTTTAAGATT 58.845 34.615 0.00 0.00 0.00 2.40
241 242 7.657354 GGCAATCACCTGTTTTCTTTAAGATTT 59.343 33.333 0.00 0.00 0.00 2.17
242 243 9.691362 GCAATCACCTGTTTTCTTTAAGATTTA 57.309 29.630 0.00 0.00 0.00 1.40
258 259 4.749976 AGATTTACTTCTCCTGCTTCGTC 58.250 43.478 0.00 0.00 0.00 4.20
264 265 0.884514 TCTCCTGCTTCGTCTGTGAG 59.115 55.000 0.00 0.00 0.00 3.51
327 328 2.352342 CACCAAAAAGGCTTTGCACAAG 59.648 45.455 14.19 2.55 43.14 3.16
348 349 7.335171 CACAAGATCACATCCAAACTAGAATCA 59.665 37.037 0.00 0.00 0.00 2.57
351 352 4.503910 TCACATCCAAACTAGAATCACCG 58.496 43.478 0.00 0.00 0.00 4.94
384 466 5.965705 TGGATTTTCCTGAAATGGATGGATT 59.034 36.000 0.00 0.00 38.06 3.01
586 3404 4.503296 GGCTGATCTGGTATATGAAACCGT 60.503 45.833 1.46 0.00 40.08 4.83
599 3417 2.218603 GAAACCGTGGTGTGACATTCT 58.781 47.619 0.00 0.00 0.00 2.40
634 3452 1.323412 CCCATGTTCGTTCCCACAAA 58.677 50.000 0.00 0.00 0.00 2.83
693 4954 1.436336 CCGTCTCGCCGGTAGAAAT 59.564 57.895 1.90 0.00 43.07 2.17
768 5035 0.178998 GCCAGCCATCACATCATCCT 60.179 55.000 0.00 0.00 0.00 3.24
772 5039 1.420514 AGCCATCACATCATCCTCTGG 59.579 52.381 0.00 0.00 0.00 3.86
779 5046 3.584406 TCACATCATCCTCTGGTTTGTCT 59.416 43.478 0.00 0.00 0.00 3.41
780 5047 3.688185 CACATCATCCTCTGGTTTGTCTG 59.312 47.826 0.00 0.00 0.00 3.51
781 5048 3.328931 ACATCATCCTCTGGTTTGTCTGT 59.671 43.478 0.00 0.00 0.00 3.41
782 5049 3.685139 TCATCCTCTGGTTTGTCTGTC 57.315 47.619 0.00 0.00 0.00 3.51
904 5209 3.854669 CCAAGCCGATCTCCGCCT 61.855 66.667 0.00 0.00 36.84 5.52
907 5212 2.060980 AAGCCGATCTCCGCCTTCT 61.061 57.895 0.00 0.00 29.08 2.85
908 5213 2.022240 AAGCCGATCTCCGCCTTCTC 62.022 60.000 0.00 0.00 29.08 2.87
909 5214 2.494530 GCCGATCTCCGCCTTCTCT 61.495 63.158 0.00 0.00 36.84 3.10
910 5215 2.022240 GCCGATCTCCGCCTTCTCTT 62.022 60.000 0.00 0.00 36.84 2.85
911 5216 0.249238 CCGATCTCCGCCTTCTCTTG 60.249 60.000 0.00 0.00 36.84 3.02
912 5217 0.741326 CGATCTCCGCCTTCTCTTGA 59.259 55.000 0.00 0.00 0.00 3.02
913 5218 1.268999 CGATCTCCGCCTTCTCTTGAG 60.269 57.143 0.00 0.00 0.00 3.02
914 5219 1.754226 GATCTCCGCCTTCTCTTGAGT 59.246 52.381 0.00 0.00 0.00 3.41
915 5220 1.178276 TCTCCGCCTTCTCTTGAGTC 58.822 55.000 0.00 0.00 0.00 3.36
916 5221 1.181786 CTCCGCCTTCTCTTGAGTCT 58.818 55.000 0.00 0.00 0.00 3.24
917 5222 1.548269 CTCCGCCTTCTCTTGAGTCTT 59.452 52.381 0.00 0.00 0.00 3.01
918 5223 1.273606 TCCGCCTTCTCTTGAGTCTTG 59.726 52.381 0.00 0.00 0.00 3.02
927 5232 4.735369 TCTCTTGAGTCTTGACCTTCTCT 58.265 43.478 0.00 0.00 0.00 3.10
1101 5458 4.900259 ATCGGGCGGAGGGGGAAT 62.900 66.667 0.20 0.00 0.00 3.01
1200 5557 3.706373 ACGCTGTCCGGCTCCAAT 61.706 61.111 0.00 0.00 42.52 3.16
1430 5787 2.560504 ACAGAGTTTGACAATGCACGA 58.439 42.857 0.00 0.00 0.00 4.35
1467 5881 6.494666 ACAGCTAGCTTATTATGTGGGTTA 57.505 37.500 16.46 0.00 0.00 2.85
1635 6066 2.874701 TGAGTTCTTCACTGCTTTCTGC 59.125 45.455 0.00 0.00 43.25 4.26
1651 6082 4.870221 TTCTGCTGTCGATTGATCATTG 57.130 40.909 0.00 0.00 0.00 2.82
1653 6084 4.256110 TCTGCTGTCGATTGATCATTGTT 58.744 39.130 0.00 0.00 0.00 2.83
1654 6085 4.696877 TCTGCTGTCGATTGATCATTGTTT 59.303 37.500 0.00 0.00 0.00 2.83
1655 6086 5.874261 TCTGCTGTCGATTGATCATTGTTTA 59.126 36.000 0.00 0.00 0.00 2.01
1657 6088 5.643348 TGCTGTCGATTGATCATTGTTTAGT 59.357 36.000 0.00 0.00 0.00 2.24
1658 6089 6.816140 TGCTGTCGATTGATCATTGTTTAGTA 59.184 34.615 0.00 0.00 0.00 1.82
1659 6090 7.010460 TGCTGTCGATTGATCATTGTTTAGTAG 59.990 37.037 0.00 0.00 0.00 2.57
1672 6141 3.560896 TGTTTAGTAGCGTTTGGTGGTTC 59.439 43.478 0.00 0.00 0.00 3.62
1688 6157 2.566724 TGGTTCATTTGGAAATCTGGGC 59.433 45.455 0.00 0.00 37.23 5.36
1690 6159 3.588955 GTTCATTTGGAAATCTGGGCAC 58.411 45.455 0.00 0.00 37.23 5.01
1738 6209 2.072298 GCGATGAGCTGTTCTTTGTCT 58.928 47.619 0.00 0.00 44.04 3.41
1749 6240 5.527582 GCTGTTCTTTGTCTCCTGAAGTTTA 59.472 40.000 0.00 0.00 0.00 2.01
1804 6295 3.633986 ACTCTGCCTTCCAAAAGAACAAG 59.366 43.478 0.00 0.00 34.14 3.16
1821 6318 8.862550 AAGAACAAGACTTGCTCTTTTTAATG 57.137 30.769 22.47 0.00 41.82 1.90
1974 6498 1.902938 GCATAAATGGCTCTCTCCCC 58.097 55.000 0.00 0.00 0.00 4.81
1989 6513 2.250008 TCTCCCCTGGATGACAAGGATA 59.750 50.000 0.00 0.00 31.94 2.59
2004 6528 3.914426 AGGATAAAGATCGCTGTTGGT 57.086 42.857 0.00 0.00 32.28 3.67
2168 6705 7.548196 AACGTCTCTTTCATTTGTGAACTTA 57.452 32.000 0.00 0.00 0.00 2.24
2169 6706 7.730364 ACGTCTCTTTCATTTGTGAACTTAT 57.270 32.000 0.00 0.00 0.00 1.73
2170 6707 8.154649 ACGTCTCTTTCATTTGTGAACTTATT 57.845 30.769 0.00 0.00 0.00 1.40
2241 7122 3.650139 ACGTCACTTCGTGCTATTTTCT 58.350 40.909 0.00 0.00 42.56 2.52
2301 7182 0.310854 CCAAGTTGTCCGACTTTGGC 59.689 55.000 13.44 0.00 37.76 4.52
2407 7290 0.249120 CATGACGGGCCACTTGACTA 59.751 55.000 4.39 0.00 0.00 2.59
2506 7389 1.984570 CCGAGGGAGCAGAACCTGA 60.985 63.158 0.00 0.00 37.18 3.86
2526 7409 1.819753 TGGCTTGGGCTAGACCATAT 58.180 50.000 20.86 0.00 40.91 1.78
2533 7416 3.928754 TGGGCTAGACCATATCTCAAGT 58.071 45.455 15.37 0.00 42.05 3.16
2566 7449 4.380843 TTGTACAAAGTCATGGACCCAT 57.619 40.909 5.64 0.00 32.89 4.00
2568 7451 2.113860 ACAAAGTCATGGACCCATCG 57.886 50.000 0.00 0.00 33.90 3.84
2571 7454 0.620556 AAGTCATGGACCCATCGCTT 59.379 50.000 0.00 4.08 33.90 4.68
2601 7484 2.671276 TCATGCAAAGGCGCCGAA 60.671 55.556 23.20 0.63 45.35 4.30
2714 7597 4.321718 CTCAGCATGGAAGACTTCTTTCA 58.678 43.478 14.72 2.34 44.86 2.69
2736 7619 1.288752 GGGCCCATTTGTGTTCACG 59.711 57.895 19.95 0.00 0.00 4.35
2745 7628 3.684103 TTTGTGTTCACGGTCATTGTC 57.316 42.857 0.00 0.00 0.00 3.18
2776 7659 2.902608 AGGTAGTGGACATGAAGGTGA 58.097 47.619 0.00 0.00 0.00 4.02
2822 7717 0.668706 CAAGACAGGCACCGACAGAG 60.669 60.000 0.00 0.00 0.00 3.35
2967 11057 5.392125 GCATAGGACTAAGGTAGGGAAGTA 58.608 45.833 0.00 0.00 0.00 2.24
3069 11166 9.620660 TGTGTTTCTTTTCTTCTTTACAGTTTC 57.379 29.630 0.00 0.00 0.00 2.78
3105 11202 1.089920 CCTCACGCCCATCTTTCTTG 58.910 55.000 0.00 0.00 0.00 3.02
3170 11272 3.888583 AGTGTGAAAAGGTCCGGTTTTA 58.111 40.909 0.00 0.00 0.00 1.52
3202 11307 3.256631 AGGATTGTTCAAGATGTTGTGCC 59.743 43.478 2.11 0.00 34.98 5.01
3231 11336 2.103373 AGTGAGACGAGTACCATGCAT 58.897 47.619 0.00 0.00 0.00 3.96
3233 11338 1.824852 TGAGACGAGTACCATGCATGT 59.175 47.619 24.58 15.01 0.00 3.21
3243 11348 0.179156 CCATGCATGTCTCGGCAAAC 60.179 55.000 24.58 0.00 44.20 2.93
3244 11349 0.806868 CATGCATGTCTCGGCAAACT 59.193 50.000 18.91 0.00 44.20 2.66
3246 11351 0.874390 TGCATGTCTCGGCAAACTTC 59.126 50.000 0.00 0.00 37.03 3.01
3247 11352 0.874390 GCATGTCTCGGCAAACTTCA 59.126 50.000 0.00 0.00 0.00 3.02
3248 11353 1.400242 GCATGTCTCGGCAAACTTCAC 60.400 52.381 0.00 0.00 0.00 3.18
3249 11354 1.872952 CATGTCTCGGCAAACTTCACA 59.127 47.619 0.00 0.00 0.00 3.58
3250 11355 1.295792 TGTCTCGGCAAACTTCACAC 58.704 50.000 0.00 0.00 0.00 3.82
3261 11369 5.062183 GGCAAACTTCACACAGAAAAAGAAC 59.938 40.000 0.00 0.00 35.40 3.01
3262 11370 5.633182 GCAAACTTCACACAGAAAAAGAACA 59.367 36.000 0.00 0.00 35.40 3.18
3277 11385 9.706691 AGAAAAAGAACACAGATTCTCGTATTA 57.293 29.630 0.00 0.00 37.99 0.98
3290 11398 7.611467 AGATTCTCGTATTATGCTGAGAGAGAT 59.389 37.037 5.48 0.00 38.59 2.75
3340 11450 5.007626 GCTTTGTGATTGTGTGAGTACTGAA 59.992 40.000 0.00 0.00 0.00 3.02
3347 11457 2.049228 GTGTGAGTACTGAAACGACCG 58.951 52.381 0.00 0.00 0.00 4.79
3350 11460 1.267806 TGAGTACTGAAACGACCGTCC 59.732 52.381 0.00 0.00 0.00 4.79
3372 11482 5.786401 CGTGAGGTTGGAAAGAAGATAAG 57.214 43.478 0.00 0.00 0.00 1.73
3375 11485 6.231211 GTGAGGTTGGAAAGAAGATAAGTGA 58.769 40.000 0.00 0.00 0.00 3.41
3381 11491 7.040409 GGTTGGAAAGAAGATAAGTGACAACAT 60.040 37.037 0.00 0.00 36.97 2.71
3383 11493 9.567776 TTGGAAAGAAGATAAGTGACAACATAA 57.432 29.630 0.00 0.00 0.00 1.90
3453 11563 9.028284 CATGAGCCATAATTATTGGGTTAAGAT 57.972 33.333 15.30 7.17 44.68 2.40
3454 11564 8.408043 TGAGCCATAATTATTGGGTTAAGATG 57.592 34.615 15.30 0.00 44.68 2.90
3456 11566 6.211384 AGCCATAATTATTGGGTTAAGATGGC 59.789 38.462 12.95 12.95 44.85 4.40
3457 11567 6.574269 GCCATAATTATTGGGTTAAGATGGCC 60.574 42.308 10.29 0.00 42.22 5.36
3465 11575 0.861837 GTTAAGATGGCCTGATCGCG 59.138 55.000 3.32 0.00 0.00 5.87
3472 11582 0.459585 TGGCCTGATCGCGAAGTAAC 60.460 55.000 15.24 2.68 0.00 2.50
3487 11597 4.419280 GAAGTAACGCACTAGTAAGTCCC 58.581 47.826 0.00 0.00 36.04 4.46
3491 11601 1.817447 ACGCACTAGTAAGTCCCAGAC 59.183 52.381 0.00 0.00 31.97 3.51
3494 11604 2.490903 GCACTAGTAAGTCCCAGACGAA 59.509 50.000 0.00 0.00 37.67 3.85
3527 11637 4.056050 GGAAAGAAATCATGCATGCATCC 58.944 43.478 30.07 21.02 33.90 3.51
3556 11666 1.603172 CCCAGATAACCGTCGCTCATC 60.603 57.143 0.00 0.00 0.00 2.92
3558 11668 0.317938 AGATAACCGTCGCTCATCGC 60.318 55.000 0.00 0.00 38.27 4.58
3559 11669 0.594028 GATAACCGTCGCTCATCGCA 60.594 55.000 0.00 0.00 39.08 5.10
3565 11675 1.667177 CCGTCGCTCATCGCATAGATT 60.667 52.381 0.00 0.00 37.52 2.40
3599 11709 8.688747 AAGGATAAACTTCTGATCCATTCATC 57.311 34.615 3.15 0.00 41.48 2.92
3602 11712 8.782144 GGATAAACTTCTGATCCATTCATCTTC 58.218 37.037 0.00 0.00 39.23 2.87
3607 11717 7.344134 ACTTCTGATCCATTCATCTTCAATCA 58.656 34.615 0.00 0.00 32.72 2.57
3610 11720 7.287810 TCTGATCCATTCATCTTCAATCATGT 58.712 34.615 0.00 0.00 32.72 3.21
3612 11722 8.983702 TGATCCATTCATCTTCAATCATGTTA 57.016 30.769 0.00 0.00 0.00 2.41
3617 11727 8.278408 CCATTCATCTTCAATCATGTTAGTACG 58.722 37.037 0.00 0.00 0.00 3.67
3620 11730 8.579682 TCATCTTCAATCATGTTAGTACGATG 57.420 34.615 0.00 0.00 0.00 3.84
3663 11773 6.672266 ATTACATTCAGATCCGTAGACCAT 57.328 37.500 0.00 0.00 0.00 3.55
3664 11774 4.592485 ACATTCAGATCCGTAGACCATC 57.408 45.455 0.00 0.00 0.00 3.51
3671 11781 1.590932 TCCGTAGACCATCTAGCGAC 58.409 55.000 0.00 0.00 30.61 5.19
3673 11783 0.235144 CGTAGACCATCTAGCGACGG 59.765 60.000 0.00 0.00 30.61 4.79
3693 11803 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
3699 11809 2.433318 ACTGAAGCGAGCCGAAGC 60.433 61.111 0.00 0.00 40.32 3.86
3713 11823 4.109675 AAGCCGCCCCGCTGTAAT 62.110 61.111 0.00 0.00 39.64 1.89
3721 11831 2.280186 CCGCTGTAATCGCCCCTC 60.280 66.667 0.00 0.00 0.00 4.30
3780 11890 0.387622 CGGGAAGTCGTCGTGCTAAA 60.388 55.000 0.00 0.00 0.00 1.85
3783 11893 1.925185 GGAAGTCGTCGTGCTAAATCC 59.075 52.381 0.00 0.00 0.00 3.01
3788 11898 3.131577 AGTCGTCGTGCTAAATCCCATAA 59.868 43.478 0.00 0.00 0.00 1.90
3790 11900 4.330620 GTCGTCGTGCTAAATCCCATAAAA 59.669 41.667 0.00 0.00 0.00 1.52
3791 11901 5.007332 GTCGTCGTGCTAAATCCCATAAAAT 59.993 40.000 0.00 0.00 0.00 1.82
3795 11905 7.425606 GTCGTGCTAAATCCCATAAAATCAAT 58.574 34.615 0.00 0.00 0.00 2.57
3800 11910 7.147689 TGCTAAATCCCATAAAATCAATGCACT 60.148 33.333 0.00 0.00 0.00 4.40
3802 11912 9.903682 CTAAATCCCATAAAATCAATGCACTAG 57.096 33.333 0.00 0.00 0.00 2.57
3807 11917 7.067372 TCCCATAAAATCAATGCACTAGAACAG 59.933 37.037 0.00 0.00 0.00 3.16
3818 11928 3.234630 TAGAACAGCAACCGCCGCT 62.235 57.895 0.00 0.00 41.47 5.52
3837 11947 6.090129 GCCGCTGATGAAAAGTGTAAATAAA 58.910 36.000 0.00 0.00 0.00 1.40
3868 11978 4.600012 ACTTGAAGACACACGAACAAAG 57.400 40.909 0.00 0.00 0.00 2.77
3870 11980 4.092968 ACTTGAAGACACACGAACAAAGAC 59.907 41.667 0.00 0.00 0.00 3.01
3881 11991 2.652181 CGAACAAAGACGAACGACGAAC 60.652 50.000 0.00 0.00 45.77 3.95
3886 11996 2.701073 AGACGAACGACGAACAGATT 57.299 45.000 0.00 0.00 45.77 2.40
3901 12011 2.290260 ACAGATTCGAGCAAATCCACCA 60.290 45.455 3.66 0.00 36.49 4.17
3906 12016 2.151202 TCGAGCAAATCCACCAAAGAC 58.849 47.619 0.00 0.00 0.00 3.01
3917 12027 0.324943 ACCAAAGACAGATCCACCGG 59.675 55.000 0.00 0.00 0.00 5.28
3925 12035 0.826715 CAGATCCACCGGAGACACAT 59.173 55.000 9.46 0.00 34.05 3.21
3927 12037 1.115467 GATCCACCGGAGACACATCT 58.885 55.000 9.46 0.00 38.15 2.90
3939 12049 3.785859 ACATCTCCACGCGCCCAT 61.786 61.111 5.73 0.00 0.00 4.00
3943 12053 4.592192 CTCCACGCGCCCATCGAT 62.592 66.667 5.73 0.00 41.67 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.921353 ATCTTAAAAGATAGCATCAAGCAGAT 57.079 30.769 3.36 0.00 43.66 2.90
16 17 9.836864 TTATCTTAAAAGATAGCATCAAGCAGA 57.163 29.630 11.25 0.00 45.75 4.26
37 38 9.233649 TGTTGATAACGGGTGTTTTTATTATCT 57.766 29.630 0.00 0.00 39.54 1.98
38 39 9.843334 TTGTTGATAACGGGTGTTTTTATTATC 57.157 29.630 0.00 0.00 39.54 1.75
41 42 8.943909 TTTTGTTGATAACGGGTGTTTTTATT 57.056 26.923 0.00 0.00 39.54 1.40
42 43 8.943909 TTTTTGTTGATAACGGGTGTTTTTAT 57.056 26.923 0.00 0.00 39.54 1.40
76 77 9.386010 TGCAGTTTTACCGAGTAAACATTATAT 57.614 29.630 8.23 0.00 37.66 0.86
77 78 8.774890 TGCAGTTTTACCGAGTAAACATTATA 57.225 30.769 8.23 0.00 37.66 0.98
78 79 7.675962 TGCAGTTTTACCGAGTAAACATTAT 57.324 32.000 8.23 0.00 37.66 1.28
79 80 7.675962 ATGCAGTTTTACCGAGTAAACATTA 57.324 32.000 8.23 0.00 37.66 1.90
80 81 6.569179 ATGCAGTTTTACCGAGTAAACATT 57.431 33.333 8.23 0.00 37.66 2.71
81 82 6.651643 TGTATGCAGTTTTACCGAGTAAACAT 59.348 34.615 8.23 10.11 37.66 2.71
82 83 5.990386 TGTATGCAGTTTTACCGAGTAAACA 59.010 36.000 8.23 5.06 37.66 2.83
83 84 6.470557 TGTATGCAGTTTTACCGAGTAAAC 57.529 37.500 8.23 4.15 37.66 2.01
84 85 7.493743 TTTGTATGCAGTTTTACCGAGTAAA 57.506 32.000 0.00 5.46 36.40 2.01
85 86 7.227116 ACTTTTGTATGCAGTTTTACCGAGTAA 59.773 33.333 0.00 0.00 0.00 2.24
86 87 6.707161 ACTTTTGTATGCAGTTTTACCGAGTA 59.293 34.615 0.00 0.00 0.00 2.59
87 88 5.529800 ACTTTTGTATGCAGTTTTACCGAGT 59.470 36.000 0.00 0.00 0.00 4.18
88 89 5.997385 ACTTTTGTATGCAGTTTTACCGAG 58.003 37.500 0.00 0.00 0.00 4.63
89 90 6.707161 ACTACTTTTGTATGCAGTTTTACCGA 59.293 34.615 0.00 0.00 33.96 4.69
90 91 6.894828 ACTACTTTTGTATGCAGTTTTACCG 58.105 36.000 0.00 0.00 33.96 4.02
91 92 9.821662 CTTACTACTTTTGTATGCAGTTTTACC 57.178 33.333 0.00 0.00 33.96 2.85
92 93 9.326339 GCTTACTACTTTTGTATGCAGTTTTAC 57.674 33.333 0.00 0.00 39.39 2.01
93 94 8.225107 CGCTTACTACTTTTGTATGCAGTTTTA 58.775 33.333 0.00 0.00 39.48 1.52
94 95 7.041644 TCGCTTACTACTTTTGTATGCAGTTTT 60.042 33.333 0.00 0.00 39.48 2.43
95 96 6.425721 TCGCTTACTACTTTTGTATGCAGTTT 59.574 34.615 0.00 0.00 39.48 2.66
96 97 5.929992 TCGCTTACTACTTTTGTATGCAGTT 59.070 36.000 0.00 0.00 39.48 3.16
97 98 5.475719 TCGCTTACTACTTTTGTATGCAGT 58.524 37.500 0.00 0.00 39.48 4.40
98 99 6.403333 TTCGCTTACTACTTTTGTATGCAG 57.597 37.500 0.00 0.00 39.48 4.41
99 100 6.788684 TTTCGCTTACTACTTTTGTATGCA 57.211 33.333 0.00 0.00 39.48 3.96
100 101 8.814235 TCTATTTCGCTTACTACTTTTGTATGC 58.186 33.333 0.00 0.00 37.56 3.14
103 104 9.350357 CAGTCTATTTCGCTTACTACTTTTGTA 57.650 33.333 0.00 0.00 0.00 2.41
104 105 7.871463 ACAGTCTATTTCGCTTACTACTTTTGT 59.129 33.333 0.00 0.00 0.00 2.83
105 106 8.240883 ACAGTCTATTTCGCTTACTACTTTTG 57.759 34.615 0.00 0.00 0.00 2.44
106 107 9.918630 TTACAGTCTATTTCGCTTACTACTTTT 57.081 29.630 0.00 0.00 0.00 2.27
107 108 9.918630 TTTACAGTCTATTTCGCTTACTACTTT 57.081 29.630 0.00 0.00 0.00 2.66
108 109 9.918630 TTTTACAGTCTATTTCGCTTACTACTT 57.081 29.630 0.00 0.00 0.00 2.24
109 110 9.918630 TTTTTACAGTCTATTTCGCTTACTACT 57.081 29.630 0.00 0.00 0.00 2.57
169 170 8.819974 CCGTGTTTTACCGAGTAAACATTATAT 58.180 33.333 10.56 0.00 37.66 0.86
170 171 7.816995 ACCGTGTTTTACCGAGTAAACATTATA 59.183 33.333 10.56 0.00 37.66 0.98
171 172 6.650390 ACCGTGTTTTACCGAGTAAACATTAT 59.350 34.615 10.56 0.67 37.66 1.28
172 173 5.988561 ACCGTGTTTTACCGAGTAAACATTA 59.011 36.000 10.56 0.00 37.66 1.90
173 174 4.815846 ACCGTGTTTTACCGAGTAAACATT 59.184 37.500 10.56 0.24 37.66 2.71
174 175 4.379652 ACCGTGTTTTACCGAGTAAACAT 58.620 39.130 10.56 0.00 37.66 2.71
175 176 3.791245 ACCGTGTTTTACCGAGTAAACA 58.209 40.909 8.23 6.74 37.66 2.83
176 177 5.233263 TGTTACCGTGTTTTACCGAGTAAAC 59.767 40.000 8.23 4.62 37.66 2.01
177 178 5.352284 TGTTACCGTGTTTTACCGAGTAAA 58.648 37.500 5.46 5.46 36.40 2.01
178 179 4.938080 TGTTACCGTGTTTTACCGAGTAA 58.062 39.130 0.00 0.00 0.00 2.24
179 180 4.576216 TGTTACCGTGTTTTACCGAGTA 57.424 40.909 0.00 0.00 0.00 2.59
180 181 3.451141 TGTTACCGTGTTTTACCGAGT 57.549 42.857 0.00 0.00 0.00 4.18
181 182 4.792528 TTTGTTACCGTGTTTTACCGAG 57.207 40.909 0.00 0.00 0.00 4.63
182 183 6.851222 TTATTTGTTACCGTGTTTTACCGA 57.149 33.333 0.00 0.00 0.00 4.69
183 184 8.504812 AAATTATTTGTTACCGTGTTTTACCG 57.495 30.769 0.00 0.00 0.00 4.02
187 188 8.819015 GGTCAAAATTATTTGTTACCGTGTTTT 58.181 29.630 0.00 0.00 45.02 2.43
188 189 7.438757 GGGTCAAAATTATTTGTTACCGTGTTT 59.561 33.333 8.99 0.00 45.02 2.83
189 190 6.924612 GGGTCAAAATTATTTGTTACCGTGTT 59.075 34.615 8.99 0.00 45.02 3.32
190 191 6.448852 GGGTCAAAATTATTTGTTACCGTGT 58.551 36.000 8.99 0.00 45.02 4.49
191 192 5.569823 CGGGTCAAAATTATTTGTTACCGTG 59.430 40.000 17.23 5.22 45.02 4.94
192 193 5.335819 CCGGGTCAAAATTATTTGTTACCGT 60.336 40.000 20.49 0.00 45.34 4.83
193 194 5.096849 CCGGGTCAAAATTATTTGTTACCG 58.903 41.667 17.90 17.90 45.76 4.02
194 195 4.865925 GCCGGGTCAAAATTATTTGTTACC 59.134 41.667 2.18 7.43 45.02 2.85
195 196 5.471257 TGCCGGGTCAAAATTATTTGTTAC 58.529 37.500 2.18 0.00 45.02 2.50
196 197 5.723672 TGCCGGGTCAAAATTATTTGTTA 57.276 34.783 2.18 0.00 45.02 2.41
197 198 4.608948 TGCCGGGTCAAAATTATTTGTT 57.391 36.364 2.18 0.00 45.02 2.83
198 199 4.608948 TTGCCGGGTCAAAATTATTTGT 57.391 36.364 2.18 0.00 45.02 2.83
199 200 5.063312 GTGATTGCCGGGTCAAAATTATTTG 59.937 40.000 2.18 0.00 45.92 2.32
200 201 5.175127 GTGATTGCCGGGTCAAAATTATTT 58.825 37.500 2.18 0.00 0.00 1.40
201 202 4.382577 GGTGATTGCCGGGTCAAAATTATT 60.383 41.667 2.18 0.00 0.00 1.40
202 203 3.132111 GGTGATTGCCGGGTCAAAATTAT 59.868 43.478 2.18 0.00 0.00 1.28
203 204 2.494073 GGTGATTGCCGGGTCAAAATTA 59.506 45.455 2.18 0.00 0.00 1.40
204 205 1.275010 GGTGATTGCCGGGTCAAAATT 59.725 47.619 2.18 0.00 0.00 1.82
205 206 0.894835 GGTGATTGCCGGGTCAAAAT 59.105 50.000 2.18 0.00 0.00 1.82
206 207 0.178975 AGGTGATTGCCGGGTCAAAA 60.179 50.000 2.18 0.00 0.00 2.44
207 208 0.893270 CAGGTGATTGCCGGGTCAAA 60.893 55.000 2.18 0.00 0.00 2.69
208 209 1.303236 CAGGTGATTGCCGGGTCAA 60.303 57.895 2.18 0.00 0.00 3.18
209 210 2.063015 AACAGGTGATTGCCGGGTCA 62.063 55.000 2.18 0.00 0.00 4.02
210 211 0.893727 AAACAGGTGATTGCCGGGTC 60.894 55.000 2.18 0.00 0.00 4.46
211 212 0.469144 AAAACAGGTGATTGCCGGGT 60.469 50.000 2.18 0.00 0.00 5.28
212 213 0.243636 GAAAACAGGTGATTGCCGGG 59.756 55.000 2.18 0.00 0.00 5.73
213 214 1.247567 AGAAAACAGGTGATTGCCGG 58.752 50.000 0.00 0.00 0.00 6.13
214 215 3.369546 AAAGAAAACAGGTGATTGCCG 57.630 42.857 0.00 0.00 0.00 5.69
215 216 6.084326 TCTTAAAGAAAACAGGTGATTGCC 57.916 37.500 0.00 0.00 0.00 4.52
216 217 8.593492 AAATCTTAAAGAAAACAGGTGATTGC 57.407 30.769 0.00 0.00 0.00 3.56
226 227 9.613957 GCAGGAGAAGTAAATCTTAAAGAAAAC 57.386 33.333 0.00 0.00 36.40 2.43
227 228 9.574516 AGCAGGAGAAGTAAATCTTAAAGAAAA 57.425 29.630 0.00 0.00 36.40 2.29
228 229 9.574516 AAGCAGGAGAAGTAAATCTTAAAGAAA 57.425 29.630 0.00 0.00 36.40 2.52
229 230 9.220767 GAAGCAGGAGAAGTAAATCTTAAAGAA 57.779 33.333 0.00 0.00 36.40 2.52
230 231 7.545965 CGAAGCAGGAGAAGTAAATCTTAAAGA 59.454 37.037 0.00 0.00 36.40 2.52
231 232 7.332182 ACGAAGCAGGAGAAGTAAATCTTAAAG 59.668 37.037 0.00 0.00 36.40 1.85
232 233 7.159372 ACGAAGCAGGAGAAGTAAATCTTAAA 58.841 34.615 0.00 0.00 36.40 1.52
233 234 6.698380 ACGAAGCAGGAGAAGTAAATCTTAA 58.302 36.000 0.00 0.00 36.40 1.85
234 235 6.153000 AGACGAAGCAGGAGAAGTAAATCTTA 59.847 38.462 0.00 0.00 36.40 2.10
235 236 5.046950 AGACGAAGCAGGAGAAGTAAATCTT 60.047 40.000 0.00 0.00 39.32 2.40
236 237 4.464597 AGACGAAGCAGGAGAAGTAAATCT 59.535 41.667 0.00 0.00 0.00 2.40
237 238 4.564769 CAGACGAAGCAGGAGAAGTAAATC 59.435 45.833 0.00 0.00 0.00 2.17
238 239 4.021016 ACAGACGAAGCAGGAGAAGTAAAT 60.021 41.667 0.00 0.00 0.00 1.40
239 240 3.321111 ACAGACGAAGCAGGAGAAGTAAA 59.679 43.478 0.00 0.00 0.00 2.01
240 241 2.891580 ACAGACGAAGCAGGAGAAGTAA 59.108 45.455 0.00 0.00 0.00 2.24
241 242 2.229062 CACAGACGAAGCAGGAGAAGTA 59.771 50.000 0.00 0.00 0.00 2.24
242 243 1.000283 CACAGACGAAGCAGGAGAAGT 60.000 52.381 0.00 0.00 0.00 3.01
243 244 1.270826 TCACAGACGAAGCAGGAGAAG 59.729 52.381 0.00 0.00 0.00 2.85
244 245 1.270826 CTCACAGACGAAGCAGGAGAA 59.729 52.381 0.00 0.00 0.00 2.87
245 246 0.884514 CTCACAGACGAAGCAGGAGA 59.115 55.000 0.00 0.00 0.00 3.71
246 247 0.600557 ACTCACAGACGAAGCAGGAG 59.399 55.000 0.00 0.00 0.00 3.69
247 248 1.040646 AACTCACAGACGAAGCAGGA 58.959 50.000 0.00 0.00 0.00 3.86
248 249 1.528586 CAAACTCACAGACGAAGCAGG 59.471 52.381 0.00 0.00 0.00 4.85
327 328 5.235186 CGGTGATTCTAGTTTGGATGTGATC 59.765 44.000 0.00 0.00 0.00 2.92
348 349 3.089284 GGAAAATCCATTCACCTTCGGT 58.911 45.455 0.00 0.00 36.28 4.69
351 352 5.982890 TTCAGGAAAATCCATTCACCTTC 57.017 39.130 0.00 0.00 39.61 3.46
384 466 2.556622 GTGCCTTTAGCCTTTGCAGTTA 59.443 45.455 0.00 0.00 42.71 2.24
443 3242 5.996669 AGGTTTAGTAGACGTGGTTTTTG 57.003 39.130 0.00 0.00 0.00 2.44
444 3243 7.933033 TCATTAGGTTTAGTAGACGTGGTTTTT 59.067 33.333 0.00 0.00 0.00 1.94
599 3417 1.003839 GGGTGGATGCAAGTGACGA 60.004 57.895 0.00 0.00 0.00 4.20
634 3452 5.192927 TGTTTCATGGAGTTGACTCAAACT 58.807 37.500 17.92 0.00 44.60 2.66
693 4954 1.541368 CCCCTCCCTCCAACCAGAA 60.541 63.158 0.00 0.00 0.00 3.02
870 5158 2.439156 GGTGGATGCAGGAGTGGC 60.439 66.667 0.00 0.00 0.00 5.01
871 5159 2.141011 TTGGGTGGATGCAGGAGTGG 62.141 60.000 0.00 0.00 0.00 4.00
873 5161 1.687612 CTTGGGTGGATGCAGGAGT 59.312 57.895 0.00 0.00 0.00 3.85
874 5162 1.751927 GCTTGGGTGGATGCAGGAG 60.752 63.158 0.00 0.00 0.00 3.69
875 5163 2.356278 GCTTGGGTGGATGCAGGA 59.644 61.111 0.00 0.00 0.00 3.86
877 5165 2.898920 ATCGGCTTGGGTGGATGCAG 62.899 60.000 0.00 0.00 0.00 4.41
904 5209 5.144100 AGAGAAGGTCAAGACTCAAGAGAA 58.856 41.667 3.73 0.00 32.59 2.87
907 5212 4.735369 AGAGAGAAGGTCAAGACTCAAGA 58.265 43.478 0.00 0.00 32.59 3.02
908 5213 4.522405 TGAGAGAGAAGGTCAAGACTCAAG 59.478 45.833 0.00 0.00 31.69 3.02
909 5214 4.474394 TGAGAGAGAAGGTCAAGACTCAA 58.526 43.478 0.00 0.00 31.69 3.02
910 5215 4.078537 CTGAGAGAGAAGGTCAAGACTCA 58.921 47.826 0.00 0.00 32.59 3.41
911 5216 3.119495 GCTGAGAGAGAAGGTCAAGACTC 60.119 52.174 0.00 0.00 0.00 3.36
912 5217 2.825532 GCTGAGAGAGAAGGTCAAGACT 59.174 50.000 0.00 0.00 0.00 3.24
913 5218 2.825532 AGCTGAGAGAGAAGGTCAAGAC 59.174 50.000 0.00 0.00 0.00 3.01
914 5219 3.088532 GAGCTGAGAGAGAAGGTCAAGA 58.911 50.000 0.00 0.00 40.00 3.02
915 5220 2.824936 TGAGCTGAGAGAGAAGGTCAAG 59.175 50.000 0.00 0.00 45.26 3.02
916 5221 2.824936 CTGAGCTGAGAGAGAAGGTCAA 59.175 50.000 0.00 0.00 46.86 3.18
917 5222 2.445427 CTGAGCTGAGAGAGAAGGTCA 58.555 52.381 0.00 4.69 45.85 4.02
918 5223 1.750778 CCTGAGCTGAGAGAGAAGGTC 59.249 57.143 0.01 0.00 40.53 3.85
927 5232 2.354401 CCGCTTCCCTGAGCTGAGA 61.354 63.158 0.01 0.00 40.52 3.27
1161 5518 2.423898 GGACAGATCCTCCGGCGAA 61.424 63.158 9.30 0.00 42.45 4.70
1200 5557 1.292223 GTAGGTGAAGGCGTGCAGA 59.708 57.895 0.00 0.00 0.00 4.26
1467 5881 5.248380 AGAAAACCTCTGCCTACAAGAAT 57.752 39.130 0.00 0.00 31.12 2.40
1633 6064 5.643348 ACTAAACAATGATCAATCGACAGCA 59.357 36.000 0.00 0.00 0.00 4.41
1634 6065 6.111768 ACTAAACAATGATCAATCGACAGC 57.888 37.500 0.00 0.00 0.00 4.40
1635 6066 7.340699 GCTACTAAACAATGATCAATCGACAG 58.659 38.462 0.00 0.00 0.00 3.51
1651 6082 3.560896 TGAACCACCAAACGCTACTAAAC 59.439 43.478 0.00 0.00 0.00 2.01
1653 6084 3.472283 TGAACCACCAAACGCTACTAA 57.528 42.857 0.00 0.00 0.00 2.24
1654 6085 3.688694 ATGAACCACCAAACGCTACTA 57.311 42.857 0.00 0.00 0.00 1.82
1655 6086 2.561478 ATGAACCACCAAACGCTACT 57.439 45.000 0.00 0.00 0.00 2.57
1657 6088 2.294791 CCAAATGAACCACCAAACGCTA 59.705 45.455 0.00 0.00 0.00 4.26
1658 6089 1.068434 CCAAATGAACCACCAAACGCT 59.932 47.619 0.00 0.00 0.00 5.07
1659 6090 1.067821 TCCAAATGAACCACCAAACGC 59.932 47.619 0.00 0.00 0.00 4.84
1672 6141 1.901159 TGGTGCCCAGATTTCCAAATG 59.099 47.619 0.00 0.00 0.00 2.32
1688 6157 1.076533 GATGGCACTCGTACGTGGTG 61.077 60.000 26.67 26.67 35.47 4.17
1690 6159 0.802222 CAGATGGCACTCGTACGTGG 60.802 60.000 20.21 14.20 35.47 4.94
1738 6209 9.621629 TTGACTTACAGAAAATAAACTTCAGGA 57.378 29.630 0.00 0.00 0.00 3.86
1749 6240 7.768120 CAGCTATCCTCTTGACTTACAGAAAAT 59.232 37.037 0.00 0.00 0.00 1.82
1804 6295 5.182001 TCCTCTGCATTAAAAAGAGCAAGTC 59.818 40.000 0.00 0.00 36.85 3.01
1974 6498 4.450419 GCGATCTTTATCCTTGTCATCCAG 59.550 45.833 0.00 0.00 0.00 3.86
2241 7122 4.947388 AGCAAGTGTAGGAACTTTGTCAAA 59.053 37.500 0.00 0.00 38.34 2.69
2407 7290 5.730296 AAGCTATATACATCGCTCTTGGT 57.270 39.130 0.00 0.00 32.31 3.67
2469 7352 4.934942 CGTCGTGCACGGTCCACA 62.935 66.667 36.41 15.69 45.46 4.17
2506 7389 1.819753 TATGGTCTAGCCCAAGCCAT 58.180 50.000 0.00 0.00 42.05 4.40
2526 7409 3.323115 ACAATCTGTCAGAGCACTTGAGA 59.677 43.478 17.03 0.00 0.00 3.27
2533 7416 4.960938 ACTTTGTACAATCTGTCAGAGCA 58.039 39.130 9.56 0.05 0.00 4.26
2714 7597 2.765699 GTGAACACAAATGGGCCCATAT 59.234 45.455 37.59 23.50 35.31 1.78
2716 7599 0.975887 GTGAACACAAATGGGCCCAT 59.024 50.000 32.75 32.75 38.46 4.00
2736 7619 0.895530 TGTCCTCCTCGACAATGACC 59.104 55.000 0.00 0.00 39.78 4.02
2745 7628 0.818296 CCACTACCTTGTCCTCCTCG 59.182 60.000 0.00 0.00 0.00 4.63
2776 7659 0.832135 TGGTGCTTCTCCTCGACCTT 60.832 55.000 0.00 0.00 0.00 3.50
2967 11057 8.478775 TCTGTGCATACTATATTGTCCTACTT 57.521 34.615 0.00 0.00 0.00 2.24
3020 11110 6.153680 ACAACCCACAAATCTGAAACAAACTA 59.846 34.615 0.00 0.00 0.00 2.24
3069 11166 2.269241 GCCCCTGAGACCTTTCCG 59.731 66.667 0.00 0.00 0.00 4.30
3105 11202 1.002773 ACCCCCGTTGTCACTATCAAC 59.997 52.381 0.00 0.00 40.89 3.18
3148 11248 3.564053 AAACCGGACCTTTTCACACTA 57.436 42.857 9.46 0.00 0.00 2.74
3155 11257 4.746115 GCGAAAATTAAAACCGGACCTTTT 59.254 37.500 9.46 7.55 0.00 2.27
3159 11261 3.285816 TGCGAAAATTAAAACCGGACC 57.714 42.857 9.46 0.00 0.00 4.46
3170 11272 5.841810 TCTTGAACAATCCTTGCGAAAATT 58.158 33.333 0.00 0.00 0.00 1.82
3202 11307 6.906659 TGGTACTCGTCTCACTTTTAACTAG 58.093 40.000 0.00 0.00 0.00 2.57
3231 11336 1.295792 GTGTGAAGTTTGCCGAGACA 58.704 50.000 0.00 0.00 0.00 3.41
3233 11338 1.138069 TCTGTGTGAAGTTTGCCGAGA 59.862 47.619 0.00 0.00 0.00 4.04
3243 11348 6.182039 TCTGTGTTCTTTTTCTGTGTGAAG 57.818 37.500 0.00 0.00 35.89 3.02
3244 11349 6.757897 ATCTGTGTTCTTTTTCTGTGTGAA 57.242 33.333 0.00 0.00 0.00 3.18
3246 11351 6.789262 AGAATCTGTGTTCTTTTTCTGTGTG 58.211 36.000 0.00 0.00 34.92 3.82
3247 11352 6.238211 CGAGAATCTGTGTTCTTTTTCTGTGT 60.238 38.462 0.00 0.00 38.51 3.72
3248 11353 6.132056 CGAGAATCTGTGTTCTTTTTCTGTG 58.868 40.000 0.00 0.00 38.51 3.66
3249 11354 5.817816 ACGAGAATCTGTGTTCTTTTTCTGT 59.182 36.000 0.00 0.00 38.51 3.41
3250 11355 6.292389 ACGAGAATCTGTGTTCTTTTTCTG 57.708 37.500 0.00 0.00 38.51 3.02
3261 11369 6.442112 TCTCAGCATAATACGAGAATCTGTG 58.558 40.000 0.00 0.00 31.73 3.66
3262 11370 6.488344 TCTCTCAGCATAATACGAGAATCTGT 59.512 38.462 0.00 0.00 34.26 3.41
3277 11385 8.813951 TCAATCATAATACATCTCTCTCAGCAT 58.186 33.333 0.00 0.00 0.00 3.79
3340 11450 2.492773 AACCTCACGGACGGTCGTT 61.493 57.895 1.43 0.00 41.86 3.85
3347 11457 2.143925 CTTCTTTCCAACCTCACGGAC 58.856 52.381 0.00 0.00 0.00 4.79
3350 11460 5.120830 CACTTATCTTCTTTCCAACCTCACG 59.879 44.000 0.00 0.00 0.00 4.35
3372 11482 8.746922 ACATGACATTTCATTTATGTTGTCAC 57.253 30.769 18.55 0.00 40.79 3.67
3408 11518 8.358148 GGCTCATGATCTCAATAAATTCATGTT 58.642 33.333 0.00 0.00 42.59 2.71
3425 11535 8.954834 TTAACCCAATAATTATGGCTCATGAT 57.045 30.769 0.00 0.00 36.58 2.45
3453 11563 0.459585 GTTACTTCGCGATCAGGCCA 60.460 55.000 10.88 0.00 0.00 5.36
3454 11564 1.480219 CGTTACTTCGCGATCAGGCC 61.480 60.000 10.88 0.00 0.00 5.19
3456 11566 1.917921 GCGTTACTTCGCGATCAGG 59.082 57.895 10.88 3.37 46.31 3.86
3465 11575 4.082571 TGGGACTTACTAGTGCGTTACTTC 60.083 45.833 5.39 0.00 43.08 3.01
3472 11582 1.202154 CGTCTGGGACTTACTAGTGCG 60.202 57.143 5.39 0.00 43.08 5.34
3482 11592 2.637383 GCGACCTTCGTCTGGGACT 61.637 63.158 0.00 0.00 42.81 3.85
3484 11594 3.379445 GGCGACCTTCGTCTGGGA 61.379 66.667 0.00 0.00 41.94 4.37
3487 11597 3.685214 CTCCGGCGACCTTCGTCTG 62.685 68.421 9.30 0.00 43.21 3.51
3491 11601 3.291101 TTTCCTCCGGCGACCTTCG 62.291 63.158 9.30 0.00 43.89 3.79
3494 11604 1.477685 TTTCTTTCCTCCGGCGACCT 61.478 55.000 9.30 0.00 0.00 3.85
3503 11613 4.380841 TGCATGCATGATTTCTTTCCTC 57.619 40.909 30.64 8.14 0.00 3.71
3505 11615 4.056050 GGATGCATGCATGATTTCTTTCC 58.944 43.478 36.73 24.18 36.70 3.13
3514 11624 2.092807 ACACTACAGGATGCATGCATGA 60.093 45.455 36.73 15.31 42.53 3.07
3527 11637 2.758979 ACGGTTATCTGGGACACTACAG 59.241 50.000 0.00 0.00 36.07 2.74
3573 11683 9.129532 GATGAATGGATCAGAAGTTTATCCTTT 57.870 33.333 11.80 11.34 42.53 3.11
3574 11684 8.501070 AGATGAATGGATCAGAAGTTTATCCTT 58.499 33.333 11.80 5.45 42.53 3.36
3576 11686 8.688747 AAGATGAATGGATCAGAAGTTTATCC 57.311 34.615 0.00 0.00 42.53 2.59
3577 11687 9.334947 TGAAGATGAATGGATCAGAAGTTTATC 57.665 33.333 0.00 0.00 42.53 1.75
3579 11689 9.690913 ATTGAAGATGAATGGATCAGAAGTTTA 57.309 29.630 0.00 0.00 42.53 2.01
3580 11690 8.591114 ATTGAAGATGAATGGATCAGAAGTTT 57.409 30.769 0.00 0.00 42.53 2.66
3581 11691 7.832685 TGATTGAAGATGAATGGATCAGAAGTT 59.167 33.333 0.00 0.00 42.53 2.66
3582 11692 7.344134 TGATTGAAGATGAATGGATCAGAAGT 58.656 34.615 0.00 0.00 42.53 3.01
3583 11693 7.803279 TGATTGAAGATGAATGGATCAGAAG 57.197 36.000 0.00 0.00 42.53 2.85
3585 11695 7.287810 ACATGATTGAAGATGAATGGATCAGA 58.712 34.615 0.00 0.00 42.53 3.27
3586 11696 7.511959 ACATGATTGAAGATGAATGGATCAG 57.488 36.000 0.00 0.00 42.53 2.90
3592 11702 9.034544 TCGTACTAACATGATTGAAGATGAATG 57.965 33.333 0.00 0.00 0.00 2.67
3599 11709 8.110612 GTGTTCATCGTACTAACATGATTGAAG 58.889 37.037 0.00 0.00 35.72 3.02
3602 11712 7.525688 AGTGTTCATCGTACTAACATGATTG 57.474 36.000 0.00 0.00 35.72 2.67
3642 11752 5.386060 AGATGGTCTACGGATCTGAATGTA 58.614 41.667 9.00 0.00 0.00 2.29
3647 11757 3.413327 GCTAGATGGTCTACGGATCTGA 58.587 50.000 9.00 0.00 0.00 3.27
3653 11763 0.235144 CGTCGCTAGATGGTCTACGG 59.765 60.000 0.00 0.00 30.31 4.02
3671 11781 1.790387 GCTTCAGTGCTTGTAGCCG 59.210 57.895 8.49 0.00 42.48 5.52
3673 11783 0.718343 CTCGCTTCAGTGCTTGTAGC 59.282 55.000 9.30 9.30 44.19 3.58
3703 11813 3.809374 GAGGGGCGATTACAGCGGG 62.809 68.421 0.00 0.00 35.00 6.13
3706 11816 2.111251 GGGAGGGGCGATTACAGC 59.889 66.667 0.00 0.00 0.00 4.40
3730 11840 2.200337 AACAAGGTTTGCCCGGCTC 61.200 57.895 11.61 1.22 38.74 4.70
3780 11890 7.560991 TGTTCTAGTGCATTGATTTTATGGGAT 59.439 33.333 0.00 0.00 0.00 3.85
3783 11893 6.694411 GCTGTTCTAGTGCATTGATTTTATGG 59.306 38.462 0.00 0.00 0.00 2.74
3788 11898 5.464168 GTTGCTGTTCTAGTGCATTGATTT 58.536 37.500 0.00 0.00 36.55 2.17
3790 11900 3.441572 GGTTGCTGTTCTAGTGCATTGAT 59.558 43.478 0.00 0.00 36.55 2.57
3791 11901 2.813754 GGTTGCTGTTCTAGTGCATTGA 59.186 45.455 0.00 0.00 36.55 2.57
3795 11905 1.227999 GCGGTTGCTGTTCTAGTGCA 61.228 55.000 0.00 0.00 38.39 4.57
3807 11917 2.470801 TTTTCATCAGCGGCGGTTGC 62.471 55.000 9.73 0.00 41.71 4.17
3837 11947 4.580580 GTGTGTCTTCAAGTTGGATCCTTT 59.419 41.667 14.23 2.07 0.00 3.11
3849 11959 3.061563 CGTCTTTGTTCGTGTGTCTTCAA 59.938 43.478 0.00 0.00 0.00 2.69
3881 11991 2.358957 TGGTGGATTTGCTCGAATCTG 58.641 47.619 9.11 0.00 36.50 2.90
3886 11996 2.151202 GTCTTTGGTGGATTTGCTCGA 58.849 47.619 0.00 0.00 0.00 4.04
3901 12011 1.550976 GTCTCCGGTGGATCTGTCTTT 59.449 52.381 0.00 0.00 0.00 2.52
3906 12016 0.826715 ATGTGTCTCCGGTGGATCTG 59.173 55.000 0.00 0.00 0.00 2.90
3927 12037 4.889856 CATCGATGGGCGCGTGGA 62.890 66.667 17.96 10.04 40.61 4.02
3932 12042 2.667536 AGCATCATCGATGGGCGC 60.668 61.111 24.61 22.00 40.10 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.