Multiple sequence alignment - TraesCS5D01G216300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G216300 chr5D 100.000 5548 0 0 1 5548 325097095 325091548 0.000000e+00 10246
1 TraesCS5D01G216300 chr5A 86.231 3181 236 87 1 3097 423255869 423252807 0.000000e+00 3262
2 TraesCS5D01G216300 chr5A 94.011 1269 73 3 4197 5464 423251788 423250522 0.000000e+00 1919
3 TraesCS5D01G216300 chr5A 90.653 674 52 4 3528 4191 423252503 423251831 0.000000e+00 885
4 TraesCS5D01G216300 chr5A 92.135 89 6 1 5460 5548 423243884 423243797 2.100000e-24 124
5 TraesCS5D01G216300 chr5B 93.337 1906 83 21 523 2412 377546469 377544592 0.000000e+00 2776
6 TraesCS5D01G216300 chr5B 88.098 983 81 16 4197 5170 377542724 377541769 0.000000e+00 1134
7 TraesCS5D01G216300 chr5B 90.519 675 52 5 3528 4191 377543439 377542766 0.000000e+00 881
8 TraesCS5D01G216300 chr5B 82.615 650 65 24 2475 3104 377544510 377543889 1.060000e-146 531
9 TraesCS5D01G216300 chr5B 87.008 254 30 3 5248 5499 377541618 377541366 3.270000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G216300 chr5D 325091548 325097095 5547 True 10246 10246 100.000000 1 5548 1 chr5D.!!$R1 5547
1 TraesCS5D01G216300 chr5A 423250522 423255869 5347 True 2022 3262 90.298333 1 5464 3 chr5A.!!$R2 5463
2 TraesCS5D01G216300 chr5B 377541366 377546469 5103 True 1121 2776 88.315400 523 5499 5 chr5B.!!$R1 4976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 446 0.031585 CGACTTTGTCCGTGGAGACA 59.968 55.0 0.00 0.0 44.89 3.41 F
555 560 0.250513 AGGCCGCTGGTTTCTAGAAG 59.749 55.0 5.12 0.0 0.00 2.85 F
2437 2542 0.183492 ACATGCCCCGCTGTATCAAT 59.817 50.0 0.00 0.0 0.00 2.57 F
3183 3306 0.175531 GGCTGTAAAATGCGCCCAAT 59.824 50.0 4.18 0.0 36.56 3.16 F
3965 4325 0.032815 GGGCTCCGCTCTAGTTGATC 59.967 60.0 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2418 2489 0.183492 ATTGATACAGCGGGGCATGT 59.817 50.0 0.0 0.0 0.00 3.21 R
2461 2566 0.108186 CGCTTCACCATGAGCAGGTA 60.108 55.0 0.0 0.0 37.23 3.08 R
3766 4120 0.169672 CTCCGCTGCATCCAAAGTTG 59.830 55.0 0.0 0.0 0.00 3.16 R
4299 4697 0.249120 CGTTCTCCACACCATAGCCA 59.751 55.0 0.0 0.0 0.00 4.75 R
5332 5812 0.664166 CAACAACGGAGGCAACATGC 60.664 55.0 0.0 0.0 44.08 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.369890 TCACTTTACTGATGTTTCATGCTCTC 59.630 38.462 0.00 0.00 0.00 3.20
27 28 2.625737 ACTGATGTTTCATGCTCTCGG 58.374 47.619 0.00 0.00 0.00 4.63
41 42 2.098117 GCTCTCGGGATTTTCCATGTTG 59.902 50.000 0.00 0.00 38.64 3.33
45 46 5.016173 TCTCGGGATTTTCCATGTTGATTT 58.984 37.500 0.00 0.00 38.64 2.17
50 51 5.512921 GGGATTTTCCATGTTGATTTGGTGT 60.513 40.000 0.00 0.00 38.64 4.16
102 103 1.495509 CACGCACATGTGTTACCCG 59.504 57.895 26.01 21.37 36.50 5.28
106 107 0.312416 GCACATGTGTTACCCGCAAA 59.688 50.000 26.01 0.00 37.07 3.68
164 165 5.151297 TCAAGCAATGATTTTTCCTTCCC 57.849 39.130 0.00 0.00 31.50 3.97
201 206 0.744874 TAGGGCGAAGAACTCATCCG 59.255 55.000 0.00 0.00 0.00 4.18
215 220 1.084370 CATCCGCTTCAGGTTCCGTC 61.084 60.000 0.00 0.00 0.00 4.79
245 250 3.044894 TGGGATTTGCCTTTCCTTTGTT 58.955 40.909 0.00 0.00 36.66 2.83
264 269 2.873288 GTCGCTCCGACGGTTAGT 59.127 61.111 14.79 0.00 46.56 2.24
265 270 1.513586 GTCGCTCCGACGGTTAGTG 60.514 63.158 14.79 11.64 46.56 2.74
288 293 0.035439 GGGAGAGAAAATCCGGTGCA 60.035 55.000 0.00 0.00 37.75 4.57
307 312 0.890090 ATCGGCTCCGGCTAGTAGTC 60.890 60.000 8.59 0.00 40.25 2.59
308 313 2.553727 CGGCTCCGGCTAGTAGTCC 61.554 68.421 0.00 0.00 38.73 3.85
309 314 1.455217 GGCTCCGGCTAGTAGTCCA 60.455 63.158 0.00 0.00 38.73 4.02
310 315 1.457009 GGCTCCGGCTAGTAGTCCAG 61.457 65.000 0.00 2.27 38.73 3.86
311 316 1.457009 GCTCCGGCTAGTAGTCCAGG 61.457 65.000 0.00 10.92 35.22 4.45
312 317 0.106619 CTCCGGCTAGTAGTCCAGGT 60.107 60.000 0.00 0.00 0.00 4.00
313 318 0.333993 TCCGGCTAGTAGTCCAGGTT 59.666 55.000 0.00 0.00 0.00 3.50
314 319 1.565759 TCCGGCTAGTAGTCCAGGTTA 59.434 52.381 0.00 0.00 0.00 2.85
315 320 1.955080 CCGGCTAGTAGTCCAGGTTAG 59.045 57.143 10.14 0.00 0.00 2.34
316 321 2.422519 CCGGCTAGTAGTCCAGGTTAGA 60.423 54.545 10.14 0.00 0.00 2.10
317 322 3.285484 CGGCTAGTAGTCCAGGTTAGAA 58.715 50.000 10.14 0.00 0.00 2.10
318 323 3.890147 CGGCTAGTAGTCCAGGTTAGAAT 59.110 47.826 10.14 0.00 0.00 2.40
319 324 4.341520 CGGCTAGTAGTCCAGGTTAGAATT 59.658 45.833 10.14 0.00 0.00 2.17
320 325 5.163437 CGGCTAGTAGTCCAGGTTAGAATTT 60.163 44.000 10.14 0.00 0.00 1.82
321 326 6.629739 CGGCTAGTAGTCCAGGTTAGAATTTT 60.630 42.308 10.14 0.00 0.00 1.82
322 327 7.110810 GGCTAGTAGTCCAGGTTAGAATTTTT 58.889 38.462 0.00 0.00 0.00 1.94
323 328 7.065923 GGCTAGTAGTCCAGGTTAGAATTTTTG 59.934 40.741 0.00 0.00 0.00 2.44
324 329 7.606839 GCTAGTAGTCCAGGTTAGAATTTTTGT 59.393 37.037 0.00 0.00 0.00 2.83
327 332 8.657712 AGTAGTCCAGGTTAGAATTTTTGTAGT 58.342 33.333 0.00 0.00 0.00 2.73
328 333 7.981102 AGTCCAGGTTAGAATTTTTGTAGTC 57.019 36.000 0.00 0.00 0.00 2.59
358 363 8.654215 GTTAGAATTTTTGTAGTCTTCGTAGGG 58.346 37.037 0.00 0.00 0.00 3.53
365 370 1.153881 GTCTTCGTAGGGGTGACGC 60.154 63.158 0.00 0.00 40.14 5.19
375 380 2.737376 GGTGACGCTCGGGTGAAC 60.737 66.667 0.98 0.00 0.00 3.18
432 437 6.251549 GCTTTGATATTTCTCGACTTTGTCC 58.748 40.000 0.00 0.00 0.00 4.02
435 440 4.862574 TGATATTTCTCGACTTTGTCCGTG 59.137 41.667 0.00 0.00 0.00 4.94
441 446 0.031585 CGACTTTGTCCGTGGAGACA 59.968 55.000 0.00 0.00 44.89 3.41
446 451 2.133195 TGTCCGTGGAGACAAAGCT 58.867 52.632 0.00 0.00 43.65 3.74
447 452 0.468226 TGTCCGTGGAGACAAAGCTT 59.532 50.000 0.00 0.00 43.65 3.74
453 458 0.884704 TGGAGACAAAGCTTGGACGC 60.885 55.000 8.15 2.82 37.44 5.19
480 485 1.291877 ACGGTTGCGAGATCTTGTGC 61.292 55.000 11.71 9.78 0.00 4.57
484 489 1.266718 GTTGCGAGATCTTGTGCCAAA 59.733 47.619 11.71 0.00 0.00 3.28
485 490 0.874390 TGCGAGATCTTGTGCCAAAC 59.126 50.000 11.71 0.00 0.00 2.93
492 497 1.098869 TCTTGTGCCAAACGCTTCAA 58.901 45.000 0.00 0.00 38.78 2.69
499 504 1.913403 GCCAAACGCTTCAAATCGATG 59.087 47.619 0.00 0.00 0.00 3.84
508 513 4.201714 CGCTTCAAATCGATGCAAGAGTTA 60.202 41.667 13.00 0.00 43.33 2.24
514 519 4.842139 ATCGATGCAAGAGTTAAACGAC 57.158 40.909 0.00 0.00 0.00 4.34
520 525 1.123756 CAAGAGTTAAACGACGACGGC 59.876 52.381 12.58 0.00 44.46 5.68
548 553 2.359975 GCTACAGGCCGCTGGTTT 60.360 61.111 0.00 0.00 34.27 3.27
555 560 0.250513 AGGCCGCTGGTTTCTAGAAG 59.749 55.000 5.12 0.00 0.00 2.85
564 569 3.645884 TGGTTTCTAGAAGCACGTGTAC 58.354 45.455 18.38 8.88 0.00 2.90
566 571 2.624316 TTCTAGAAGCACGTGTACGG 57.376 50.000 18.38 3.47 44.95 4.02
629 634 2.983229 AGAAGAGCAGCGACAATGATT 58.017 42.857 0.00 0.00 0.00 2.57
633 638 5.587844 AGAAGAGCAGCGACAATGATTATTT 59.412 36.000 0.00 0.00 0.00 1.40
639 644 5.220854 GCAGCGACAATGATTATTTAGTGGT 60.221 40.000 0.00 0.00 0.00 4.16
640 645 6.422223 CAGCGACAATGATTATTTAGTGGTC 58.578 40.000 0.00 0.00 0.00 4.02
644 649 6.363577 ACAATGATTATTTAGTGGTCTGCG 57.636 37.500 0.00 0.00 0.00 5.18
656 661 3.390521 TCTGCGGGCCTCGATGTT 61.391 61.111 16.53 0.00 42.43 2.71
670 675 8.021396 GGGCCTCGATGTTATTTTTATTATGTC 58.979 37.037 0.84 0.00 0.00 3.06
699 704 7.450124 TGTTTGTGTTACCAGTGAACTTTTA 57.550 32.000 0.00 0.00 0.00 1.52
785 796 7.414984 GGCCTTGAAGATTGAGACAAAGAATAG 60.415 40.741 0.00 0.00 0.00 1.73
786 797 7.120432 GCCTTGAAGATTGAGACAAAGAATAGT 59.880 37.037 0.00 0.00 0.00 2.12
787 798 9.658799 CCTTGAAGATTGAGACAAAGAATAGTA 57.341 33.333 0.00 0.00 0.00 1.82
818 835 8.598916 TCACTAGAGGAGGAGTAGATTATACTG 58.401 40.741 0.00 0.00 0.00 2.74
819 836 8.380099 CACTAGAGGAGGAGTAGATTATACTGT 58.620 40.741 0.00 0.00 0.00 3.55
820 837 9.618447 ACTAGAGGAGGAGTAGATTATACTGTA 57.382 37.037 0.00 0.00 0.00 2.74
821 838 9.880157 CTAGAGGAGGAGTAGATTATACTGTAC 57.120 40.741 0.00 0.00 0.00 2.90
822 839 8.514533 AGAGGAGGAGTAGATTATACTGTACT 57.485 38.462 0.16 0.16 0.00 2.73
823 840 8.951541 AGAGGAGGAGTAGATTATACTGTACTT 58.048 37.037 0.00 0.00 0.00 2.24
849 866 5.627182 ACTGCAGATCACAAATATCCTCT 57.373 39.130 23.35 0.00 0.00 3.69
1208 1238 4.662961 CGTCAGGTCCGTGCTGCA 62.663 66.667 0.00 0.00 0.00 4.41
1209 1239 2.046892 GTCAGGTCCGTGCTGCAT 60.047 61.111 5.27 0.00 0.00 3.96
1223 1264 1.309549 TGCATACCCCCAATCCCCT 60.310 57.895 0.00 0.00 0.00 4.79
1297 1338 1.153549 GACAGCTGACATCCCGGTC 60.154 63.158 23.35 0.00 38.29 4.79
1462 1503 1.170919 CGTACGATCCCCGACCATCT 61.171 60.000 10.44 0.00 41.76 2.90
1660 1704 1.274447 CTCCCGGAGACCGTAAGTTTT 59.726 52.381 9.01 0.00 46.80 2.43
1883 1942 2.073816 GCGTTTCAAACCAGCTAGCTA 58.926 47.619 18.86 0.00 0.00 3.32
1917 1976 1.552578 TTGCCTGAATTGCTGCAGAT 58.447 45.000 20.43 0.00 34.81 2.90
1977 2036 4.058817 GTGCTAATTATTGTCCTCGGGAG 58.941 47.826 0.00 0.00 29.39 4.30
1981 2040 6.126997 TGCTAATTATTGTCCTCGGGAGTTTA 60.127 38.462 0.00 0.00 29.39 2.01
1982 2041 6.935208 GCTAATTATTGTCCTCGGGAGTTTAT 59.065 38.462 0.00 0.00 29.39 1.40
2118 2182 1.135402 CGCCTGTTTGTAAGGATTGCC 60.135 52.381 0.00 0.00 36.91 4.52
2133 2197 2.987413 TTGCCGCACAATACTTCTTG 57.013 45.000 0.00 0.00 31.73 3.02
2135 2199 0.804989 GCCGCACAATACTTCTTGCT 59.195 50.000 0.00 0.00 32.56 3.91
2412 2483 6.119144 TGAGTTTCTACAGTGCTGTTTTTC 57.881 37.500 10.28 2.24 41.83 2.29
2414 2485 6.037172 TGAGTTTCTACAGTGCTGTTTTTCTC 59.963 38.462 10.28 11.68 41.83 2.87
2416 2487 3.740115 TCTACAGTGCTGTTTTTCTCCC 58.260 45.455 10.28 0.00 41.83 4.30
2417 2488 1.692411 ACAGTGCTGTTTTTCTCCCC 58.308 50.000 0.00 0.00 41.83 4.81
2418 2489 1.064017 ACAGTGCTGTTTTTCTCCCCA 60.064 47.619 0.00 0.00 41.83 4.96
2419 2490 1.338020 CAGTGCTGTTTTTCTCCCCAC 59.662 52.381 0.00 0.00 0.00 4.61
2420 2491 1.064017 AGTGCTGTTTTTCTCCCCACA 60.064 47.619 0.00 0.00 0.00 4.17
2421 2492 1.963515 GTGCTGTTTTTCTCCCCACAT 59.036 47.619 0.00 0.00 0.00 3.21
2422 2493 1.962807 TGCTGTTTTTCTCCCCACATG 59.037 47.619 0.00 0.00 0.00 3.21
2424 2495 1.273327 CTGTTTTTCTCCCCACATGCC 59.727 52.381 0.00 0.00 0.00 4.40
2425 2496 0.608130 GTTTTTCTCCCCACATGCCC 59.392 55.000 0.00 0.00 0.00 5.36
2426 2497 0.544120 TTTTTCTCCCCACATGCCCC 60.544 55.000 0.00 0.00 0.00 5.80
2427 2498 2.779742 TTTTCTCCCCACATGCCCCG 62.780 60.000 0.00 0.00 0.00 5.73
2436 2541 0.747644 CACATGCCCCGCTGTATCAA 60.748 55.000 0.00 0.00 0.00 2.57
2437 2542 0.183492 ACATGCCCCGCTGTATCAAT 59.817 50.000 0.00 0.00 0.00 2.57
2458 2563 8.489676 TCAATAATAACCAATGTGCCCAATAT 57.510 30.769 0.00 0.00 0.00 1.28
2459 2564 8.932610 TCAATAATAACCAATGTGCCCAATATT 58.067 29.630 0.00 0.00 0.00 1.28
2460 2565 8.991026 CAATAATAACCAATGTGCCCAATATTG 58.009 33.333 8.58 8.58 0.00 1.90
2461 2566 6.558488 AATAACCAATGTGCCCAATATTGT 57.442 33.333 14.25 0.00 31.55 2.71
2462 2567 7.667575 AATAACCAATGTGCCCAATATTGTA 57.332 32.000 14.25 0.00 31.55 2.41
2463 2568 5.337578 AACCAATGTGCCCAATATTGTAC 57.662 39.130 14.25 10.34 31.55 2.90
2464 2569 3.704061 ACCAATGTGCCCAATATTGTACC 59.296 43.478 14.25 3.02 31.55 3.34
2465 2570 3.960102 CCAATGTGCCCAATATTGTACCT 59.040 43.478 14.25 1.70 31.55 3.08
2466 2571 4.202141 CCAATGTGCCCAATATTGTACCTG 60.202 45.833 14.25 9.54 31.55 4.00
2467 2572 2.374184 TGTGCCCAATATTGTACCTGC 58.626 47.619 14.25 8.86 0.00 4.85
2468 2573 2.025416 TGTGCCCAATATTGTACCTGCT 60.025 45.455 14.25 0.00 0.00 4.24
2469 2574 2.618709 GTGCCCAATATTGTACCTGCTC 59.381 50.000 14.25 6.21 0.00 4.26
2470 2575 2.240921 TGCCCAATATTGTACCTGCTCA 59.759 45.455 14.25 0.00 0.00 4.26
2471 2576 3.117550 TGCCCAATATTGTACCTGCTCAT 60.118 43.478 14.25 0.00 0.00 2.90
2472 2577 3.254166 GCCCAATATTGTACCTGCTCATG 59.746 47.826 14.25 0.00 0.00 3.07
2473 2578 3.822735 CCCAATATTGTACCTGCTCATGG 59.177 47.826 14.25 0.27 0.00 3.66
2507 2612 6.313658 GCTCAAATCTGGTGTTTTTCAACTTT 59.686 34.615 0.00 0.00 34.34 2.66
2508 2613 7.593875 TCAAATCTGGTGTTTTTCAACTTTG 57.406 32.000 0.00 0.00 34.34 2.77
2516 2621 7.102346 TGGTGTTTTTCAACTTTGACATTCAT 58.898 30.769 0.00 0.00 36.83 2.57
2520 2625 9.299963 TGTTTTTCAACTTTGACATTCATACTG 57.700 29.630 0.00 0.00 36.83 2.74
2529 2634 9.733556 ACTTTGACATTCATACTGTAATAACCA 57.266 29.630 0.00 0.00 0.00 3.67
2539 2644 8.644216 TCATACTGTAATAACCAATGTATCCGT 58.356 33.333 0.00 0.00 0.00 4.69
2585 2690 2.738743 CCAGTTAATTGTCTGGGCCAT 58.261 47.619 6.72 0.00 45.11 4.40
2589 2694 5.192927 CAGTTAATTGTCTGGGCCATAGAA 58.807 41.667 6.72 5.07 0.00 2.10
2615 2720 9.219603 ACAAAGAGACTTTAATTCAATCATCGA 57.780 29.630 0.00 0.00 0.00 3.59
2622 2727 8.335532 ACTTTAATTCAATCATCGACCTGAAA 57.664 30.769 0.00 0.00 31.94 2.69
2626 2731 9.613428 TTAATTCAATCATCGACCTGAAAGTAT 57.387 29.630 0.00 0.00 31.94 2.12
2638 2745 7.924412 TCGACCTGAAAGTATATATTTGTGGAC 59.076 37.037 0.00 4.91 0.00 4.02
2643 2750 3.323243 AGTATATATTTGTGGACGCGCC 58.677 45.455 5.73 9.63 37.10 6.53
2644 2751 2.543777 ATATATTTGTGGACGCGCCT 57.456 45.000 18.14 0.00 37.63 5.52
2645 2752 2.319136 TATATTTGTGGACGCGCCTT 57.681 45.000 18.14 0.00 37.63 4.35
2646 2753 1.014352 ATATTTGTGGACGCGCCTTC 58.986 50.000 18.14 12.40 37.63 3.46
2647 2754 1.355796 TATTTGTGGACGCGCCTTCG 61.356 55.000 18.14 0.00 37.63 3.79
2648 2755 3.681022 TATTTGTGGACGCGCCTTCGA 62.681 52.381 18.14 9.87 38.10 3.71
2649 2756 3.793775 TTGTGGACGCGCCTTCGAA 62.794 57.895 18.14 0.00 38.10 3.71
2650 2757 2.813908 GTGGACGCGCCTTCGAAT 60.814 61.111 18.14 0.00 38.10 3.34
2651 2758 2.508439 TGGACGCGCCTTCGAATC 60.508 61.111 18.14 1.16 38.10 2.52
2652 2759 3.617538 GGACGCGCCTTCGAATCG 61.618 66.667 5.73 13.48 38.10 3.34
2653 2760 2.879462 GACGCGCCTTCGAATCGT 60.879 61.111 5.73 14.91 38.10 3.73
2654 2761 3.126722 GACGCGCCTTCGAATCGTG 62.127 63.158 23.05 23.05 38.10 4.35
2655 2762 4.559386 CGCGCCTTCGAATCGTGC 62.559 66.667 16.76 16.76 38.10 5.34
2656 2763 3.188786 GCGCCTTCGAATCGTGCT 61.189 61.111 18.54 0.00 38.10 4.40
2657 2764 2.697425 CGCCTTCGAATCGTGCTG 59.303 61.111 1.52 0.00 38.10 4.41
2672 2779 6.830114 ATCGTGCTGCTTCTAATAAAGTAC 57.170 37.500 0.00 0.00 0.00 2.73
2703 2813 2.180946 ACTACATCTGATGGCCCAGA 57.819 50.000 20.83 13.34 46.02 3.86
2705 2815 2.171448 ACTACATCTGATGGCCCAGAAC 59.829 50.000 20.83 0.00 45.22 3.01
2726 2836 0.830648 GGGACCGACAGATTGATCCA 59.169 55.000 0.00 0.00 0.00 3.41
2732 2842 2.291365 CGACAGATTGATCCATTGCCA 58.709 47.619 0.00 0.00 0.00 4.92
2733 2843 2.882761 CGACAGATTGATCCATTGCCAT 59.117 45.455 0.00 0.00 0.00 4.40
2743 2853 6.602410 TGATCCATTGCCATAGTTGAAAAA 57.398 33.333 0.00 0.00 0.00 1.94
2773 2884 1.899814 TCAGAGCGGTGGTTGAGTATT 59.100 47.619 0.00 0.00 0.00 1.89
2804 2915 5.989249 TCTTTTTCATCAGACACAATCACG 58.011 37.500 0.00 0.00 0.00 4.35
2810 2921 7.665561 TTCATCAGACACAATCACGAATTAA 57.334 32.000 0.00 0.00 0.00 1.40
2828 2939 7.976734 ACGAATTAATTGGAAGTGTTCAACAAA 59.023 29.630 16.08 0.00 0.00 2.83
2832 2943 4.981806 TTGGAAGTGTTCAACAAAGGAG 57.018 40.909 0.00 0.00 0.00 3.69
2834 2945 4.340617 TGGAAGTGTTCAACAAAGGAGTT 58.659 39.130 0.00 0.00 0.00 3.01
2838 2949 7.039644 TGGAAGTGTTCAACAAAGGAGTTAAAA 60.040 33.333 0.00 0.00 0.00 1.52
2839 2950 7.979537 GGAAGTGTTCAACAAAGGAGTTAAAAT 59.020 33.333 0.00 0.00 0.00 1.82
2841 2952 9.797556 AAGTGTTCAACAAAGGAGTTAAAATAC 57.202 29.630 0.00 0.00 0.00 1.89
2842 2953 9.185680 AGTGTTCAACAAAGGAGTTAAAATACT 57.814 29.630 0.00 0.00 30.37 2.12
2843 2954 9.233232 GTGTTCAACAAAGGAGTTAAAATACTG 57.767 33.333 0.00 0.00 0.00 2.74
2844 2955 7.918562 TGTTCAACAAAGGAGTTAAAATACTGC 59.081 33.333 0.00 0.00 36.81 4.40
2845 2956 7.575414 TCAACAAAGGAGTTAAAATACTGCA 57.425 32.000 0.00 0.00 38.77 4.41
2846 2957 7.422399 TCAACAAAGGAGTTAAAATACTGCAC 58.578 34.615 0.00 0.00 38.77 4.57
2847 2958 7.284489 TCAACAAAGGAGTTAAAATACTGCACT 59.716 33.333 0.00 0.00 38.77 4.40
2848 2959 7.203255 ACAAAGGAGTTAAAATACTGCACTC 57.797 36.000 0.00 0.00 38.77 3.51
2857 2968 3.319137 AATACTGCACTCGTGTGACAT 57.681 42.857 21.06 7.37 46.55 3.06
2860 2971 2.219209 CTGCACTCGTGTGACATGCG 62.219 60.000 21.06 0.00 46.55 4.73
2863 2974 3.075998 CTCGTGTGACATGCGAGC 58.924 61.111 11.73 0.00 44.03 5.03
2866 2977 1.131218 CGTGTGACATGCGAGCAAG 59.869 57.895 0.57 0.00 0.00 4.01
2873 2987 4.693095 TGTGACATGCGAGCAAGTAAATAA 59.307 37.500 5.92 0.00 0.00 1.40
2875 2989 4.935205 TGACATGCGAGCAAGTAAATAACT 59.065 37.500 5.92 0.00 41.49 2.24
2879 2993 3.370978 TGCGAGCAAGTAAATAACTGAGC 59.629 43.478 0.00 0.00 38.88 4.26
2881 2995 4.142902 GCGAGCAAGTAAATAACTGAGCAA 60.143 41.667 0.00 0.00 40.64 3.91
2884 2998 6.310467 CGAGCAAGTAAATAACTGAGCAACTA 59.690 38.462 5.88 0.00 40.64 2.24
2943 3065 1.004862 TCAGTTGGTGTTTGGTGACCA 59.995 47.619 0.00 0.00 40.61 4.02
2946 3068 1.822371 GTTGGTGTTTGGTGACCAGTT 59.178 47.619 3.77 0.00 43.17 3.16
2948 3070 1.272203 TGGTGTTTGGTGACCAGTTGT 60.272 47.619 3.77 0.00 37.32 3.32
2955 3077 6.261381 GTGTTTGGTGACCAGTTGTTATCTTA 59.739 38.462 3.77 0.00 33.81 2.10
2962 3084 3.222603 CCAGTTGTTATCTTATGGGGCC 58.777 50.000 0.00 0.00 0.00 5.80
2964 3086 4.536765 CAGTTGTTATCTTATGGGGCCTT 58.463 43.478 0.84 0.00 0.00 4.35
2967 3089 3.815809 TGTTATCTTATGGGGCCTTTCG 58.184 45.455 0.84 0.00 0.00 3.46
2970 3092 0.988832 TCTTATGGGGCCTTTCGTGT 59.011 50.000 0.84 0.00 0.00 4.49
2984 3106 5.178797 CCTTTCGTGTCTCCTGTTCATTAT 58.821 41.667 0.00 0.00 0.00 1.28
2986 3108 6.183360 CCTTTCGTGTCTCCTGTTCATTATTC 60.183 42.308 0.00 0.00 0.00 1.75
3038 3161 3.976793 AATATTGTCAGCCGAATGCAG 57.023 42.857 0.00 0.00 44.83 4.41
3059 3182 5.631026 CAGTTCCATATGCACACAAGTTAC 58.369 41.667 0.00 0.00 0.00 2.50
3082 3205 5.104941 ACAGTGCCATATGAAGCTAGTAACA 60.105 40.000 3.65 0.00 0.00 2.41
3085 3208 7.657354 CAGTGCCATATGAAGCTAGTAACATAA 59.343 37.037 3.65 0.00 0.00 1.90
3089 3212 7.335422 GCCATATGAAGCTAGTAACATAAGCAT 59.665 37.037 3.65 0.00 38.75 3.79
3097 3220 6.049149 GCTAGTAACATAAGCATCAGTGGAA 58.951 40.000 0.00 0.00 36.26 3.53
3098 3221 6.201806 GCTAGTAACATAAGCATCAGTGGAAG 59.798 42.308 0.00 0.00 36.26 3.46
3099 3222 6.299805 AGTAACATAAGCATCAGTGGAAGA 57.700 37.500 0.00 0.00 0.00 2.87
3100 3223 6.711277 AGTAACATAAGCATCAGTGGAAGAA 58.289 36.000 0.00 0.00 0.00 2.52
3101 3224 7.341805 AGTAACATAAGCATCAGTGGAAGAAT 58.658 34.615 0.00 0.00 0.00 2.40
3102 3225 7.831193 AGTAACATAAGCATCAGTGGAAGAATT 59.169 33.333 0.00 0.00 0.00 2.17
3103 3226 7.472334 AACATAAGCATCAGTGGAAGAATTT 57.528 32.000 0.00 0.00 0.00 1.82
3104 3227 6.860080 ACATAAGCATCAGTGGAAGAATTTG 58.140 36.000 0.00 0.00 0.00 2.32
3105 3228 3.863142 AGCATCAGTGGAAGAATTTGC 57.137 42.857 0.00 0.00 0.00 3.68
3106 3229 3.428532 AGCATCAGTGGAAGAATTTGCT 58.571 40.909 0.00 0.00 34.56 3.91
3107 3230 3.830755 AGCATCAGTGGAAGAATTTGCTT 59.169 39.130 0.00 0.00 35.81 3.91
3108 3231 4.082354 AGCATCAGTGGAAGAATTTGCTTC 60.082 41.667 0.00 0.00 42.73 3.86
3109 3232 4.321452 GCATCAGTGGAAGAATTTGCTTCA 60.321 41.667 8.64 0.00 44.71 3.02
3110 3233 5.623824 GCATCAGTGGAAGAATTTGCTTCAT 60.624 40.000 8.64 0.00 44.71 2.57
3111 3234 5.381174 TCAGTGGAAGAATTTGCTTCATG 57.619 39.130 8.64 0.00 44.71 3.07
3112 3235 5.072055 TCAGTGGAAGAATTTGCTTCATGA 58.928 37.500 8.64 0.00 44.71 3.07
3113 3236 5.048504 TCAGTGGAAGAATTTGCTTCATGAC 60.049 40.000 0.00 3.40 44.71 3.06
3114 3237 5.048224 CAGTGGAAGAATTTGCTTCATGACT 60.048 40.000 0.00 5.10 44.71 3.41
3115 3238 5.537674 AGTGGAAGAATTTGCTTCATGACTT 59.462 36.000 0.00 0.00 44.71 3.01
3116 3239 5.860716 GTGGAAGAATTTGCTTCATGACTTC 59.139 40.000 0.00 2.38 44.71 3.01
3117 3240 5.535783 TGGAAGAATTTGCTTCATGACTTCA 59.464 36.000 15.95 4.34 44.71 3.02
3118 3241 6.091437 GGAAGAATTTGCTTCATGACTTCAG 58.909 40.000 15.95 4.70 44.71 3.02
3119 3242 5.056894 AGAATTTGCTTCATGACTTCAGC 57.943 39.130 9.71 9.71 36.24 4.26
3120 3243 4.521639 AGAATTTGCTTCATGACTTCAGCA 59.478 37.500 14.39 14.39 36.24 4.41
3121 3244 4.859304 ATTTGCTTCATGACTTCAGCAA 57.141 36.364 22.62 22.62 39.96 3.91
3122 3245 4.652421 TTTGCTTCATGACTTCAGCAAA 57.348 36.364 28.81 28.81 45.83 3.68
3123 3246 4.652421 TTGCTTCATGACTTCAGCAAAA 57.348 36.364 23.70 8.31 38.98 2.44
3124 3247 4.859304 TGCTTCATGACTTCAGCAAAAT 57.141 36.364 15.71 0.00 0.00 1.82
3125 3248 5.204409 TGCTTCATGACTTCAGCAAAATT 57.796 34.783 15.71 0.00 0.00 1.82
3126 3249 5.603596 TGCTTCATGACTTCAGCAAAATTT 58.396 33.333 15.71 0.00 0.00 1.82
3127 3250 6.050432 TGCTTCATGACTTCAGCAAAATTTT 58.950 32.000 15.71 0.00 0.00 1.82
3128 3251 7.208777 TGCTTCATGACTTCAGCAAAATTTTA 58.791 30.769 15.71 0.00 0.00 1.52
3129 3252 7.169645 TGCTTCATGACTTCAGCAAAATTTTAC 59.830 33.333 15.71 0.00 0.00 2.01
3130 3253 7.169645 GCTTCATGACTTCAGCAAAATTTTACA 59.830 33.333 11.42 0.00 0.00 2.41
3131 3254 8.578308 TTCATGACTTCAGCAAAATTTTACAG 57.422 30.769 2.44 0.00 0.00 2.74
3132 3255 7.715657 TCATGACTTCAGCAAAATTTTACAGT 58.284 30.769 2.44 0.00 0.00 3.55
3133 3256 8.196771 TCATGACTTCAGCAAAATTTTACAGTT 58.803 29.630 2.44 0.00 0.00 3.16
3134 3257 9.462174 CATGACTTCAGCAAAATTTTACAGTTA 57.538 29.630 2.44 0.00 0.00 2.24
3136 3259 9.296400 TGACTTCAGCAAAATTTTACAGTTAAC 57.704 29.630 2.44 0.00 0.00 2.01
3137 3260 9.296400 GACTTCAGCAAAATTTTACAGTTAACA 57.704 29.630 8.61 0.00 0.00 2.41
3138 3261 9.816354 ACTTCAGCAAAATTTTACAGTTAACAT 57.184 25.926 8.61 0.00 0.00 2.71
3140 3263 8.810652 TCAGCAAAATTTTACAGTTAACATCC 57.189 30.769 8.61 0.00 0.00 3.51
3141 3264 7.593273 TCAGCAAAATTTTACAGTTAACATCCG 59.407 33.333 8.61 0.00 0.00 4.18
3142 3265 7.593273 CAGCAAAATTTTACAGTTAACATCCGA 59.407 33.333 8.61 0.00 0.00 4.55
3143 3266 7.807907 AGCAAAATTTTACAGTTAACATCCGAG 59.192 33.333 8.61 0.00 0.00 4.63
3144 3267 7.061789 GCAAAATTTTACAGTTAACATCCGAGG 59.938 37.037 8.61 0.00 0.00 4.63
3145 3268 7.989416 AAATTTTACAGTTAACATCCGAGGA 57.011 32.000 8.61 0.00 0.00 3.71
3146 3269 7.989416 AATTTTACAGTTAACATCCGAGGAA 57.011 32.000 8.61 0.00 0.00 3.36
3147 3270 6.790285 TTTTACAGTTAACATCCGAGGAAC 57.210 37.500 8.61 0.00 0.00 3.62
3148 3271 2.955614 ACAGTTAACATCCGAGGAACG 58.044 47.619 8.61 0.00 42.18 3.95
3149 3272 2.298163 ACAGTTAACATCCGAGGAACGT 59.702 45.455 8.61 0.00 40.78 3.99
3150 3273 3.243975 ACAGTTAACATCCGAGGAACGTT 60.244 43.478 8.61 0.00 40.78 3.99
3151 3274 4.022068 ACAGTTAACATCCGAGGAACGTTA 60.022 41.667 8.61 11.26 40.78 3.18
3152 3275 4.925054 CAGTTAACATCCGAGGAACGTTAA 59.075 41.667 18.41 18.41 40.78 2.01
3153 3276 5.579511 CAGTTAACATCCGAGGAACGTTAAT 59.420 40.000 22.11 13.94 37.84 1.40
3154 3277 6.091713 CAGTTAACATCCGAGGAACGTTAATT 59.908 38.462 22.11 18.18 37.84 1.40
3155 3278 4.939509 AACATCCGAGGAACGTTAATTG 57.060 40.909 0.00 0.00 40.78 2.32
3156 3279 3.934068 ACATCCGAGGAACGTTAATTGT 58.066 40.909 0.00 0.00 40.78 2.71
3157 3280 5.075858 ACATCCGAGGAACGTTAATTGTA 57.924 39.130 0.00 0.00 40.78 2.41
3158 3281 5.107133 ACATCCGAGGAACGTTAATTGTAG 58.893 41.667 0.00 0.00 40.78 2.74
3159 3282 3.514645 TCCGAGGAACGTTAATTGTAGC 58.485 45.455 0.00 0.00 40.78 3.58
3160 3283 3.056678 TCCGAGGAACGTTAATTGTAGCA 60.057 43.478 0.00 0.00 40.78 3.49
3161 3284 3.680937 CCGAGGAACGTTAATTGTAGCAA 59.319 43.478 0.00 0.00 40.78 3.91
3162 3285 4.152759 CCGAGGAACGTTAATTGTAGCAAA 59.847 41.667 0.00 0.00 40.78 3.68
3163 3286 5.334260 CCGAGGAACGTTAATTGTAGCAAAA 60.334 40.000 0.00 0.00 40.78 2.44
3164 3287 5.788531 CGAGGAACGTTAATTGTAGCAAAAG 59.211 40.000 0.00 0.00 37.22 2.27
3165 3288 6.009115 AGGAACGTTAATTGTAGCAAAAGG 57.991 37.500 0.00 0.00 0.00 3.11
3166 3289 4.619760 GGAACGTTAATTGTAGCAAAAGGC 59.380 41.667 0.00 0.00 45.30 4.35
3178 3301 1.126662 GCAAAAGGCTGTAAAATGCGC 59.873 47.619 0.00 0.00 40.25 6.09
3179 3302 1.726248 CAAAAGGCTGTAAAATGCGCC 59.274 47.619 4.18 0.00 42.79 6.53
3180 3303 0.246360 AAAGGCTGTAAAATGCGCCC 59.754 50.000 4.18 0.00 43.48 6.13
3181 3304 0.897863 AAGGCTGTAAAATGCGCCCA 60.898 50.000 4.18 0.00 43.48 5.36
3182 3305 0.897863 AGGCTGTAAAATGCGCCCAA 60.898 50.000 4.18 0.00 43.48 4.12
3183 3306 0.175531 GGCTGTAAAATGCGCCCAAT 59.824 50.000 4.18 0.00 36.56 3.16
3184 3307 1.405391 GGCTGTAAAATGCGCCCAATT 60.405 47.619 4.18 0.00 36.56 2.32
3185 3308 2.345876 GCTGTAAAATGCGCCCAATTT 58.654 42.857 4.18 0.89 0.00 1.82
3186 3309 2.741517 GCTGTAAAATGCGCCCAATTTT 59.258 40.909 17.63 17.63 0.00 1.82
3187 3310 3.929610 GCTGTAAAATGCGCCCAATTTTA 59.070 39.130 16.02 16.02 0.00 1.52
3188 3311 4.390297 GCTGTAAAATGCGCCCAATTTTAA 59.610 37.500 19.65 12.25 33.32 1.52
3189 3312 5.445806 GCTGTAAAATGCGCCCAATTTTAAG 60.446 40.000 19.65 18.35 33.32 1.85
3190 3313 4.390297 TGTAAAATGCGCCCAATTTTAAGC 59.610 37.500 19.65 12.30 33.32 3.09
3191 3314 2.758736 AATGCGCCCAATTTTAAGCA 57.241 40.000 4.18 0.00 39.02 3.91
3192 3315 2.758736 ATGCGCCCAATTTTAAGCAA 57.241 40.000 4.18 0.00 38.15 3.91
3193 3316 2.758736 TGCGCCCAATTTTAAGCAAT 57.241 40.000 4.18 0.00 0.00 3.56
3194 3317 3.051081 TGCGCCCAATTTTAAGCAATT 57.949 38.095 4.18 0.00 0.00 2.32
3195 3318 4.193826 TGCGCCCAATTTTAAGCAATTA 57.806 36.364 4.18 0.00 0.00 1.40
3196 3319 4.764172 TGCGCCCAATTTTAAGCAATTAT 58.236 34.783 4.18 0.00 0.00 1.28
3197 3320 5.181748 TGCGCCCAATTTTAAGCAATTATT 58.818 33.333 4.18 0.00 0.00 1.40
3198 3321 5.293079 TGCGCCCAATTTTAAGCAATTATTC 59.707 36.000 4.18 0.00 0.00 1.75
3199 3322 5.556194 GCGCCCAATTTTAAGCAATTATTCG 60.556 40.000 0.00 0.00 0.00 3.34
3200 3323 5.051106 CGCCCAATTTTAAGCAATTATTCGG 60.051 40.000 0.00 0.00 0.00 4.30
3201 3324 5.815222 GCCCAATTTTAAGCAATTATTCGGT 59.185 36.000 0.00 0.00 0.00 4.69
3202 3325 6.019075 GCCCAATTTTAAGCAATTATTCGGTC 60.019 38.462 0.00 0.00 0.00 4.79
3203 3326 7.038659 CCCAATTTTAAGCAATTATTCGGTCA 58.961 34.615 0.00 0.00 0.00 4.02
3204 3327 7.547370 CCCAATTTTAAGCAATTATTCGGTCAA 59.453 33.333 0.00 0.00 0.00 3.18
3205 3328 8.594687 CCAATTTTAAGCAATTATTCGGTCAAG 58.405 33.333 0.00 0.00 0.00 3.02
3206 3329 9.139174 CAATTTTAAGCAATTATTCGGTCAAGT 57.861 29.630 0.00 0.00 0.00 3.16
3207 3330 8.687824 ATTTTAAGCAATTATTCGGTCAAGTG 57.312 30.769 0.00 0.00 0.00 3.16
3208 3331 4.701956 AAGCAATTATTCGGTCAAGTGG 57.298 40.909 0.00 0.00 0.00 4.00
3209 3332 2.423538 AGCAATTATTCGGTCAAGTGGC 59.576 45.455 0.00 0.00 0.00 5.01
3210 3333 2.163412 GCAATTATTCGGTCAAGTGGCA 59.837 45.455 0.00 0.00 0.00 4.92
3211 3334 3.181487 GCAATTATTCGGTCAAGTGGCAT 60.181 43.478 0.00 0.00 0.00 4.40
3212 3335 4.036262 GCAATTATTCGGTCAAGTGGCATA 59.964 41.667 0.00 0.00 0.00 3.14
3213 3336 5.510671 CAATTATTCGGTCAAGTGGCATAC 58.489 41.667 0.00 0.00 0.00 2.39
3214 3337 2.779755 ATTCGGTCAAGTGGCATACA 57.220 45.000 0.00 0.00 0.00 2.29
3215 3338 2.093306 TTCGGTCAAGTGGCATACAG 57.907 50.000 0.00 0.00 0.00 2.74
3216 3339 1.262417 TCGGTCAAGTGGCATACAGA 58.738 50.000 0.00 0.00 0.00 3.41
3217 3340 1.831106 TCGGTCAAGTGGCATACAGAT 59.169 47.619 0.00 0.00 0.00 2.90
3218 3341 3.028130 TCGGTCAAGTGGCATACAGATA 58.972 45.455 0.00 0.00 0.00 1.98
3219 3342 3.449377 TCGGTCAAGTGGCATACAGATAA 59.551 43.478 0.00 0.00 0.00 1.75
3220 3343 4.081365 TCGGTCAAGTGGCATACAGATAAA 60.081 41.667 0.00 0.00 0.00 1.40
3221 3344 4.816385 CGGTCAAGTGGCATACAGATAAAT 59.184 41.667 0.00 0.00 0.00 1.40
3222 3345 5.989168 CGGTCAAGTGGCATACAGATAAATA 59.011 40.000 0.00 0.00 0.00 1.40
3223 3346 6.650807 CGGTCAAGTGGCATACAGATAAATAT 59.349 38.462 0.00 0.00 0.00 1.28
3224 3347 7.817478 CGGTCAAGTGGCATACAGATAAATATA 59.183 37.037 0.00 0.00 0.00 0.86
3225 3348 9.672673 GGTCAAGTGGCATACAGATAAATATAT 57.327 33.333 0.00 0.00 0.00 0.86
3230 3353 9.698309 AGTGGCATACAGATAAATATATATCGC 57.302 33.333 0.00 0.00 37.37 4.58
3231 3354 9.476202 GTGGCATACAGATAAATATATATCGCA 57.524 33.333 0.00 0.00 37.37 5.10
3232 3355 9.696917 TGGCATACAGATAAATATATATCGCAG 57.303 33.333 0.00 0.00 37.37 5.18
3233 3356 9.698309 GGCATACAGATAAATATATATCGCAGT 57.302 33.333 0.00 0.00 37.37 4.40
3244 3367 8.939201 AATATATATCGCAGTCTTCAATGAGG 57.061 34.615 0.00 0.00 0.00 3.86
3245 3368 4.679373 ATATCGCAGTCTTCAATGAGGT 57.321 40.909 0.00 0.00 0.00 3.85
3246 3369 2.839486 TCGCAGTCTTCAATGAGGTT 57.161 45.000 0.00 0.00 0.00 3.50
3247 3370 3.953712 TCGCAGTCTTCAATGAGGTTA 57.046 42.857 0.00 0.00 0.00 2.85
3248 3371 3.585862 TCGCAGTCTTCAATGAGGTTAC 58.414 45.455 0.00 0.00 0.00 2.50
3249 3372 3.258372 TCGCAGTCTTCAATGAGGTTACT 59.742 43.478 0.00 0.00 0.00 2.24
3250 3373 3.997021 CGCAGTCTTCAATGAGGTTACTT 59.003 43.478 0.00 0.00 0.00 2.24
3251 3374 5.047590 TCGCAGTCTTCAATGAGGTTACTTA 60.048 40.000 0.00 0.00 0.00 2.24
3252 3375 5.062308 CGCAGTCTTCAATGAGGTTACTTAC 59.938 44.000 0.00 0.00 0.00 2.34
3268 3391 8.546597 GGTTACTTACCCTAATTACGTGAAAA 57.453 34.615 0.00 0.00 41.43 2.29
3269 3392 8.443160 GGTTACTTACCCTAATTACGTGAAAAC 58.557 37.037 0.00 0.00 41.43 2.43
3270 3393 9.208022 GTTACTTACCCTAATTACGTGAAAACT 57.792 33.333 0.00 0.00 0.00 2.66
3271 3394 9.777297 TTACTTACCCTAATTACGTGAAAACTT 57.223 29.630 0.00 0.00 0.00 2.66
3272 3395 8.681486 ACTTACCCTAATTACGTGAAAACTTT 57.319 30.769 0.00 0.00 0.00 2.66
3273 3396 8.562052 ACTTACCCTAATTACGTGAAAACTTTG 58.438 33.333 0.00 0.00 0.00 2.77
3274 3397 6.947644 ACCCTAATTACGTGAAAACTTTGT 57.052 33.333 0.00 0.00 0.00 2.83
3295 3575 6.961359 TGTGATCACGGTAAAATTCAGTAG 57.039 37.500 20.54 0.00 0.00 2.57
3297 3577 6.932400 TGTGATCACGGTAAAATTCAGTAGTT 59.068 34.615 20.54 0.00 0.00 2.24
3299 3579 8.378421 GTGATCACGGTAAAATTCAGTAGTTAC 58.622 37.037 10.69 0.00 0.00 2.50
3300 3580 8.089597 TGATCACGGTAAAATTCAGTAGTTACA 58.910 33.333 0.00 0.00 0.00 2.41
3302 3582 8.470040 TCACGGTAAAATTCAGTAGTTACATC 57.530 34.615 0.00 0.00 0.00 3.06
3320 3600 9.209175 AGTTACATCATTAGTTCACTTTCAGTC 57.791 33.333 0.00 0.00 0.00 3.51
3321 3601 9.209175 GTTACATCATTAGTTCACTTTCAGTCT 57.791 33.333 0.00 0.00 0.00 3.24
3322 3602 7.664082 ACATCATTAGTTCACTTTCAGTCTG 57.336 36.000 0.00 0.00 0.00 3.51
3326 3606 6.931281 TCATTAGTTCACTTTCAGTCTGAAGG 59.069 38.462 20.05 20.05 37.70 3.46
3327 3607 3.471680 AGTTCACTTTCAGTCTGAAGGC 58.528 45.455 21.23 7.95 37.01 4.35
3328 3608 2.550180 GTTCACTTTCAGTCTGAAGGCC 59.450 50.000 21.23 0.00 37.01 5.19
3329 3609 2.050144 TCACTTTCAGTCTGAAGGCCT 58.950 47.619 21.23 0.00 37.01 5.19
3330 3610 3.239449 TCACTTTCAGTCTGAAGGCCTA 58.761 45.455 21.23 7.22 37.01 3.93
3331 3611 3.259374 TCACTTTCAGTCTGAAGGCCTAG 59.741 47.826 21.23 14.84 37.01 3.02
3332 3612 3.259374 CACTTTCAGTCTGAAGGCCTAGA 59.741 47.826 21.23 2.53 37.01 2.43
3333 3613 3.259625 ACTTTCAGTCTGAAGGCCTAGAC 59.740 47.826 23.16 23.16 42.77 2.59
3337 3617 2.951457 GTCTGAAGGCCTAGACTGAC 57.049 55.000 23.28 21.39 40.06 3.51
3338 3618 2.171840 GTCTGAAGGCCTAGACTGACA 58.828 52.381 23.28 8.09 40.06 3.58
3339 3619 2.563179 GTCTGAAGGCCTAGACTGACAA 59.437 50.000 23.28 0.00 40.06 3.18
3340 3620 2.828520 TCTGAAGGCCTAGACTGACAAG 59.171 50.000 5.16 0.00 0.00 3.16
3341 3621 2.828520 CTGAAGGCCTAGACTGACAAGA 59.171 50.000 5.16 0.00 0.00 3.02
3342 3622 3.239449 TGAAGGCCTAGACTGACAAGAA 58.761 45.455 5.16 0.00 0.00 2.52
3347 3627 4.042187 AGGCCTAGACTGACAAGAAAACAT 59.958 41.667 1.29 0.00 0.00 2.71
3355 3635 8.147642 AGACTGACAAGAAAACATGAAGTTAG 57.852 34.615 0.00 0.00 40.26 2.34
3398 3678 5.581126 TCTGAATTTGTATGATTGGGTGC 57.419 39.130 0.00 0.00 0.00 5.01
3412 3692 3.951775 TGGGTGCGATTTAAGCATTTT 57.048 38.095 0.00 0.00 46.96 1.82
3413 3693 5.392767 TTGGGTGCGATTTAAGCATTTTA 57.607 34.783 0.00 0.00 46.96 1.52
3414 3694 5.392767 TGGGTGCGATTTAAGCATTTTAA 57.607 34.783 0.00 0.00 46.96 1.52
3440 3720 7.891498 AATAAACTTACCCTGTGACTTTTGT 57.109 32.000 0.00 0.00 0.00 2.83
3463 3744 9.959749 TTGTCCATTTTCTGTACAAAAGTATTC 57.040 29.630 0.00 0.00 0.00 1.75
3465 3746 9.827411 GTCCATTTTCTGTACAAAAGTATTCTC 57.173 33.333 0.00 0.00 0.00 2.87
3466 3747 9.567776 TCCATTTTCTGTACAAAAGTATTCTCA 57.432 29.630 0.00 0.00 0.00 3.27
3548 3898 3.523547 TGGCATATTTTCAGCATTGCAC 58.476 40.909 11.91 0.00 0.00 4.57
3550 3900 3.800506 GGCATATTTTCAGCATTGCACTC 59.199 43.478 11.91 0.00 0.00 3.51
3559 3909 5.050644 TCAGCATTGCACTCTTTTATGTG 57.949 39.130 11.91 0.00 37.26 3.21
3560 3910 4.761227 TCAGCATTGCACTCTTTTATGTGA 59.239 37.500 11.91 0.00 36.38 3.58
3562 3912 6.071784 TCAGCATTGCACTCTTTTATGTGATT 60.072 34.615 11.91 0.00 36.38 2.57
3563 3913 6.034577 CAGCATTGCACTCTTTTATGTGATTG 59.965 38.462 11.91 0.00 36.38 2.67
3564 3914 5.220340 GCATTGCACTCTTTTATGTGATTGC 60.220 40.000 3.15 0.00 38.69 3.56
3587 3937 5.107143 GCCAATCGAGAAGATAGCTCATTTC 60.107 44.000 0.00 0.00 38.98 2.17
3588 3938 5.407995 CCAATCGAGAAGATAGCTCATTTCC 59.592 44.000 0.00 0.00 38.98 3.13
3595 3945 8.735315 CGAGAAGATAGCTCATTTCCTAGAATA 58.265 37.037 0.00 0.00 32.67 1.75
3624 3978 7.275183 CCTCAAAAGGAAAAAGAAGAAATGGT 58.725 34.615 0.00 0.00 46.67 3.55
3630 3984 6.582636 AGGAAAAAGAAGAAATGGTTGTTCC 58.417 36.000 0.00 0.00 37.66 3.62
3651 4005 7.550551 TGTTCCACAAACAAAGCAATTGAATTA 59.449 29.630 10.34 0.00 44.83 1.40
3766 4120 0.889186 ACTGTGCCGGTGGATTCAAC 60.889 55.000 1.90 0.00 0.00 3.18
3769 4123 0.039527 GTGCCGGTGGATTCAACAAC 60.040 55.000 1.90 0.00 0.00 3.32
3772 4126 1.339929 GCCGGTGGATTCAACAACTTT 59.660 47.619 1.90 0.00 0.00 2.66
3829 4183 5.356751 TGAGTACATCAAATACAATGGTGGC 59.643 40.000 0.00 0.00 34.02 5.01
3832 4186 5.680594 ACATCAAATACAATGGTGGCATT 57.319 34.783 0.00 0.00 33.12 3.56
3898 4252 4.460948 CCATTACAAGGCTGAAAATGCT 57.539 40.909 9.34 0.00 32.66 3.79
3943 4297 6.485313 CAGTTAACATCACACTGGTAAGGAAA 59.515 38.462 8.61 0.00 35.28 3.13
3947 4301 3.502123 TCACACTGGTAAGGAAAAGGG 57.498 47.619 0.00 0.00 0.00 3.95
3948 4302 2.107552 TCACACTGGTAAGGAAAAGGGG 59.892 50.000 0.00 0.00 0.00 4.79
3950 4304 1.075536 CACTGGTAAGGAAAAGGGGCT 59.924 52.381 0.00 0.00 0.00 5.19
3951 4305 1.354705 ACTGGTAAGGAAAAGGGGCTC 59.645 52.381 0.00 0.00 0.00 4.70
3965 4325 0.032815 GGGCTCCGCTCTAGTTGATC 59.967 60.000 0.00 0.00 0.00 2.92
3971 4331 5.293560 GCTCCGCTCTAGTTGATCTTAATT 58.706 41.667 0.00 0.00 0.00 1.40
4024 4384 2.221169 TGCTGATCTTTTTGTCGCTGT 58.779 42.857 0.00 0.00 0.00 4.40
4043 4403 3.849911 TGTTAAGAATGCTGAGGACGAG 58.150 45.455 0.00 0.00 0.00 4.18
4049 4409 0.175302 ATGCTGAGGACGAGCTGAAG 59.825 55.000 0.00 0.00 37.35 3.02
4058 4418 2.022129 CGAGCTGAAGAACGCCGTT 61.022 57.895 0.16 0.16 0.00 4.44
4076 4436 2.671963 GGGTTGGTTCGCCCAGTC 60.672 66.667 0.00 0.00 46.31 3.51
4082 4442 1.668151 GGTTCGCCCAGTCAGTGTC 60.668 63.158 0.00 0.00 0.00 3.67
4133 4493 2.165319 ACAAGAGCGGAGTTTACACC 57.835 50.000 0.00 0.00 0.00 4.16
4136 4496 1.339097 AGAGCGGAGTTTACACCAGT 58.661 50.000 0.00 0.00 0.00 4.00
4177 4537 4.765856 ACCTGATGTGAGTACGACTAAACT 59.234 41.667 0.00 0.00 0.00 2.66
4191 4551 4.092968 CGACTAAACTGTAGGCCATCAAAC 59.907 45.833 5.01 0.00 0.00 2.93
4192 4552 5.242795 ACTAAACTGTAGGCCATCAAACT 57.757 39.130 5.01 0.00 0.00 2.66
4195 4555 7.048512 ACTAAACTGTAGGCCATCAAACTATC 58.951 38.462 5.01 0.00 0.00 2.08
4198 4558 5.371526 ACTGTAGGCCATCAAACTATCATG 58.628 41.667 5.01 0.00 0.00 3.07
4200 4560 5.125356 TGTAGGCCATCAAACTATCATGTG 58.875 41.667 5.01 0.00 0.00 3.21
4201 4561 2.954318 AGGCCATCAAACTATCATGTGC 59.046 45.455 5.01 0.00 0.00 4.57
4204 4564 4.498682 GGCCATCAAACTATCATGTGCTTC 60.499 45.833 0.00 0.00 0.00 3.86
4205 4565 4.498682 GCCATCAAACTATCATGTGCTTCC 60.499 45.833 0.00 0.00 0.00 3.46
4206 4566 4.885907 CCATCAAACTATCATGTGCTTCCT 59.114 41.667 0.00 0.00 0.00 3.36
4208 4568 6.017605 CCATCAAACTATCATGTGCTTCCTAC 60.018 42.308 0.00 0.00 0.00 3.18
4221 4619 3.197766 TGCTTCCTACCCTTGTATCACTG 59.802 47.826 0.00 0.00 0.00 3.66
4226 4624 2.479566 ACCCTTGTATCACTGCACTG 57.520 50.000 0.00 0.00 0.00 3.66
4233 4631 4.188247 TGTATCACTGCACTGTTCTACC 57.812 45.455 0.00 0.00 0.00 3.18
4275 4673 5.746990 AGTTGTGCTGAAACTACTAGGAT 57.253 39.130 0.00 0.00 36.11 3.24
4305 4703 1.449601 CGTCTTGGCGGTTGGCTAT 60.450 57.895 0.00 0.00 42.94 2.97
4326 4724 3.998672 GTGGAGAACGGCGTCCCA 61.999 66.667 15.17 18.24 31.04 4.37
4347 4745 4.518211 CCATATTGGCTCATCAAGAACTCC 59.482 45.833 0.00 0.00 0.00 3.85
4356 4754 2.930562 AAGAACTCCTGGGGCGCT 60.931 61.111 7.64 0.00 0.00 5.92
4440 4838 1.202758 TCCGTGTGCACTTCCATCTTT 60.203 47.619 19.41 0.00 0.00 2.52
4486 4884 0.800631 TCGTGACGCGATACTGACTT 59.199 50.000 15.93 0.00 45.68 3.01
4568 4970 1.445410 CGCCAAATCGACGAGTCCA 60.445 57.895 3.01 0.00 0.00 4.02
4582 4984 0.173708 AGTCCAAGTCTCGATTCGCC 59.826 55.000 0.00 0.00 0.00 5.54
4885 5290 0.031043 CCACACATGCATATTGCCGG 59.969 55.000 0.00 0.00 44.23 6.13
4892 5297 3.503363 ACATGCATATTGCCGGATACTTG 59.497 43.478 5.05 0.00 44.23 3.16
4896 5301 0.109723 TATTGCCGGATACTTGGGGC 59.890 55.000 5.05 0.00 45.76 5.80
4975 5380 3.451178 TGCCCTATACACTTCAGTCCTTC 59.549 47.826 0.00 0.00 0.00 3.46
4998 5403 1.755179 ATTTTCCATGAGGCCTCACG 58.245 50.000 37.39 29.75 43.11 4.35
5014 5419 4.495844 GCCTCACGTAATGGTAAGAATTGC 60.496 45.833 0.00 0.00 0.00 3.56
5015 5420 4.260212 CCTCACGTAATGGTAAGAATTGCG 60.260 45.833 5.32 5.32 45.08 4.85
5101 5506 5.661503 TCCCCAATCCTATGAAGCAAATA 57.338 39.130 0.00 0.00 0.00 1.40
5207 5654 5.235401 GCGACTCACTCTTCTTTTCTTCTTT 59.765 40.000 0.00 0.00 0.00 2.52
5239 5686 3.967326 TGAGTCTCTTCTTGGTCCTGAAA 59.033 43.478 0.65 0.00 0.00 2.69
5242 5689 4.164221 AGTCTCTTCTTGGTCCTGAAACAA 59.836 41.667 0.00 0.00 0.00 2.83
5332 5812 6.854892 CGCTAGAGCTCCAAATGAAAATTATG 59.145 38.462 10.93 0.00 39.32 1.90
5344 5824 4.757594 TGAAAATTATGCATGTTGCCTCC 58.242 39.130 10.16 0.00 44.23 4.30
5386 5866 2.755103 AGTCAAATCAAGATTTCCCCGC 59.245 45.455 5.11 0.00 38.84 6.13
5409 5890 3.068448 TGCATCATGTTTCAACAAGCTGT 59.932 39.130 0.00 0.00 43.03 4.40
5419 5900 6.317642 TGTTTCAACAAGCTGTAAGTGTGTAT 59.682 34.615 0.00 0.00 35.67 2.29
5454 5935 2.099141 ATCCACGAGTGACATGTTGG 57.901 50.000 0.00 2.28 0.00 3.77
5499 5980 9.859427 CTTCAAGGTGATTTTCTTATATTGCAA 57.141 29.630 0.00 0.00 0.00 4.08
5541 6022 4.637483 TTTAGATATGTTTGCAGCAGGC 57.363 40.909 0.00 0.00 45.13 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.625737 CCGAGAGCATGAAACATCAGT 58.374 47.619 0.00 0.00 0.00 3.41
25 26 4.183101 CCAAATCAACATGGAAAATCCCG 58.817 43.478 0.00 0.00 39.12 5.14
27 28 5.550290 ACACCAAATCAACATGGAAAATCC 58.450 37.500 0.00 0.00 39.12 3.01
41 42 9.453325 TTTATAACTTTCGTTGAACACCAAATC 57.547 29.630 0.00 0.00 36.36 2.17
45 46 7.496591 AGTCTTTATAACTTTCGTTGAACACCA 59.503 33.333 0.00 0.00 34.59 4.17
50 51 9.635520 CTCCTAGTCTTTATAACTTTCGTTGAA 57.364 33.333 0.00 0.00 34.59 2.69
55 56 8.901793 AGGTACTCCTAGTCTTTATAACTTTCG 58.098 37.037 0.00 0.00 43.12 3.46
65 66 4.157472 GCGTGTTAGGTACTCCTAGTCTTT 59.843 45.833 0.00 0.00 45.71 2.52
70 71 2.751259 TGTGCGTGTTAGGTACTCCTAG 59.249 50.000 0.00 0.00 45.71 3.02
86 87 1.846849 TTGCGGGTAACACATGTGCG 61.847 55.000 25.68 20.01 39.74 5.34
113 114 4.405358 ACACATGTTCATGTTCTTTTGGGT 59.595 37.500 14.65 5.78 31.37 4.51
114 115 4.947645 ACACATGTTCATGTTCTTTTGGG 58.052 39.130 14.65 5.24 31.37 4.12
115 116 7.424803 TCTAACACATGTTCATGTTCTTTTGG 58.575 34.615 14.65 8.66 39.67 3.28
116 117 8.854979 TTCTAACACATGTTCATGTTCTTTTG 57.145 30.769 14.65 9.82 39.67 2.44
117 118 9.683069 GATTCTAACACATGTTCATGTTCTTTT 57.317 29.630 14.65 8.97 39.67 2.27
118 119 8.849168 TGATTCTAACACATGTTCATGTTCTTT 58.151 29.630 14.65 10.92 39.67 2.52
119 120 8.394971 TGATTCTAACACATGTTCATGTTCTT 57.605 30.769 14.65 11.49 39.67 2.52
120 121 7.984422 TGATTCTAACACATGTTCATGTTCT 57.016 32.000 14.65 8.26 39.67 3.01
121 122 7.272084 GCTTGATTCTAACACATGTTCATGTTC 59.728 37.037 14.65 9.31 39.67 3.18
122 123 7.086376 GCTTGATTCTAACACATGTTCATGTT 58.914 34.615 14.65 0.00 41.77 2.71
123 124 6.207221 TGCTTGATTCTAACACATGTTCATGT 59.793 34.615 11.97 11.97 39.31 3.21
124 125 6.614160 TGCTTGATTCTAACACATGTTCATG 58.386 36.000 10.72 10.72 39.31 3.07
128 129 7.218228 TCATTGCTTGATTCTAACACATGTT 57.782 32.000 0.00 2.32 41.73 2.71
147 148 3.369787 GCCAGGGGAAGGAAAAATCATTG 60.370 47.826 0.00 0.00 0.00 2.82
154 155 0.783206 TCATGCCAGGGGAAGGAAAA 59.217 50.000 0.00 0.00 0.00 2.29
179 184 1.137086 GATGAGTTCTTCGCCCTAGCA 59.863 52.381 0.00 0.00 39.83 3.49
201 206 2.027625 CACCGACGGAACCTGAAGC 61.028 63.158 23.38 0.00 0.00 3.86
215 220 1.508088 GCAAATCCCAAGCTCACCG 59.492 57.895 0.00 0.00 0.00 4.94
259 264 0.611714 TTTCTCTCCCCGCCACTAAC 59.388 55.000 0.00 0.00 0.00 2.34
261 266 1.485066 GATTTTCTCTCCCCGCCACTA 59.515 52.381 0.00 0.00 0.00 2.74
262 267 0.253327 GATTTTCTCTCCCCGCCACT 59.747 55.000 0.00 0.00 0.00 4.00
263 268 0.748367 GGATTTTCTCTCCCCGCCAC 60.748 60.000 0.00 0.00 0.00 5.01
264 269 1.607612 GGATTTTCTCTCCCCGCCA 59.392 57.895 0.00 0.00 0.00 5.69
265 270 1.523938 CGGATTTTCTCTCCCCGCC 60.524 63.158 0.00 0.00 33.47 6.13
288 293 0.890090 GACTACTAGCCGGAGCCGAT 60.890 60.000 5.05 1.13 42.83 4.18
297 302 5.873146 AATTCTAACCTGGACTACTAGCC 57.127 43.478 0.00 0.00 0.00 3.93
307 312 6.151144 CCTGGACTACAAAAATTCTAACCTGG 59.849 42.308 0.00 0.00 0.00 4.45
308 313 6.715264 ACCTGGACTACAAAAATTCTAACCTG 59.285 38.462 0.00 0.00 0.00 4.00
309 314 6.849151 ACCTGGACTACAAAAATTCTAACCT 58.151 36.000 0.00 0.00 0.00 3.50
310 315 7.520451 AACCTGGACTACAAAAATTCTAACC 57.480 36.000 0.00 0.00 0.00 2.85
311 316 9.498176 TCTAACCTGGACTACAAAAATTCTAAC 57.502 33.333 0.00 0.00 0.00 2.34
314 319 9.588096 AATTCTAACCTGGACTACAAAAATTCT 57.412 29.630 0.00 0.00 0.00 2.40
318 323 9.810545 CAAAAATTCTAACCTGGACTACAAAAA 57.189 29.630 0.00 0.00 0.00 1.94
319 324 8.973182 ACAAAAATTCTAACCTGGACTACAAAA 58.027 29.630 0.00 0.00 0.00 2.44
320 325 8.528044 ACAAAAATTCTAACCTGGACTACAAA 57.472 30.769 0.00 0.00 0.00 2.83
321 326 9.280174 CTACAAAAATTCTAACCTGGACTACAA 57.720 33.333 0.00 0.00 0.00 2.41
322 327 8.434392 ACTACAAAAATTCTAACCTGGACTACA 58.566 33.333 0.00 0.00 0.00 2.74
323 328 8.843885 ACTACAAAAATTCTAACCTGGACTAC 57.156 34.615 0.00 0.00 0.00 2.73
324 329 8.877195 AGACTACAAAAATTCTAACCTGGACTA 58.123 33.333 0.00 0.00 0.00 2.59
325 330 7.746703 AGACTACAAAAATTCTAACCTGGACT 58.253 34.615 0.00 0.00 0.00 3.85
326 331 7.981102 AGACTACAAAAATTCTAACCTGGAC 57.019 36.000 0.00 0.00 0.00 4.02
327 332 7.386848 CGAAGACTACAAAAATTCTAACCTGGA 59.613 37.037 0.00 0.00 0.00 3.86
328 333 7.172703 ACGAAGACTACAAAAATTCTAACCTGG 59.827 37.037 0.00 0.00 0.00 4.45
358 363 2.737376 GTTCACCCGAGCGTCACC 60.737 66.667 0.00 0.00 0.00 4.02
375 380 3.929948 GAAGATGAAGCGGCGCCG 61.930 66.667 43.13 43.13 43.09 6.46
432 437 0.868406 GTCCAAGCTTTGTCTCCACG 59.132 55.000 0.00 0.00 0.00 4.94
435 440 0.884704 TGCGTCCAAGCTTTGTCTCC 60.885 55.000 0.00 0.00 38.13 3.71
441 446 0.036732 TGGATCTGCGTCCAAGCTTT 59.963 50.000 0.00 0.00 45.03 3.51
447 452 2.107041 AACCGTTGGATCTGCGTCCA 62.107 55.000 1.54 1.54 46.28 4.02
453 458 0.389817 TCTCGCAACCGTTGGATCTG 60.390 55.000 13.12 0.00 35.54 2.90
463 468 0.955428 TGGCACAAGATCTCGCAACC 60.955 55.000 12.27 4.88 31.92 3.77
480 485 1.913403 GCATCGATTTGAAGCGTTTGG 59.087 47.619 0.00 0.00 39.14 3.28
484 489 2.076100 TCTTGCATCGATTTGAAGCGT 58.924 42.857 0.00 0.00 44.14 5.07
485 490 2.094894 ACTCTTGCATCGATTTGAAGCG 59.905 45.455 0.00 0.00 44.14 4.68
492 497 4.201589 CGTCGTTTAACTCTTGCATCGATT 60.202 41.667 0.00 0.00 0.00 3.34
499 504 1.123756 CCGTCGTCGTTTAACTCTTGC 59.876 52.381 0.71 0.00 35.01 4.01
508 513 1.731969 GCTACAGCCGTCGTCGTTT 60.732 57.895 0.71 0.00 35.01 3.60
514 519 2.103143 CTGGAGCTACAGCCGTCG 59.897 66.667 14.40 0.00 43.38 5.12
534 539 1.192146 TCTAGAAACCAGCGGCCTGT 61.192 55.000 0.00 0.00 37.38 4.00
548 553 1.812235 TCCGTACACGTGCTTCTAGA 58.188 50.000 17.22 2.32 37.74 2.43
555 560 2.556534 AGAACTATCCGTACACGTGC 57.443 50.000 17.22 0.00 37.74 5.34
564 569 3.654414 GATGGTAGCCAAGAACTATCCG 58.346 50.000 0.00 0.00 36.95 4.18
566 571 4.202121 TGTCGATGGTAGCCAAGAACTATC 60.202 45.833 0.00 0.00 36.95 2.08
619 624 6.422223 GCAGACCACTAAATAATCATTGTCG 58.578 40.000 0.00 0.00 0.00 4.35
629 634 0.179468 GGCCCGCAGACCACTAAATA 59.821 55.000 0.00 0.00 0.00 1.40
633 638 3.075005 GAGGCCCGCAGACCACTA 61.075 66.667 0.00 0.00 0.00 2.74
639 644 1.399744 ATAACATCGAGGCCCGCAGA 61.400 55.000 0.00 0.00 38.37 4.26
640 645 0.532862 AATAACATCGAGGCCCGCAG 60.533 55.000 0.00 1.45 38.37 5.18
644 649 7.882179 ACATAATAAAAATAACATCGAGGCCC 58.118 34.615 0.00 0.00 0.00 5.80
670 675 5.303747 TCACTGGTAACACAAACAACTTG 57.696 39.130 0.00 0.00 46.17 3.16
675 680 5.968528 AAAGTTCACTGGTAACACAAACA 57.031 34.783 0.00 0.00 46.17 2.83
716 725 3.850837 TCGTGCGCATGTTTATTTCAATG 59.149 39.130 27.72 0.00 0.00 2.82
818 835 9.751542 ATATTTGTGATCTGCAGTAGTAAGTAC 57.248 33.333 14.67 4.02 0.00 2.73
819 836 9.967346 GATATTTGTGATCTGCAGTAGTAAGTA 57.033 33.333 14.67 6.01 0.00 2.24
820 837 7.928706 GGATATTTGTGATCTGCAGTAGTAAGT 59.071 37.037 14.67 4.08 0.00 2.24
821 838 8.147058 AGGATATTTGTGATCTGCAGTAGTAAG 58.853 37.037 14.67 0.00 0.00 2.34
822 839 8.023021 AGGATATTTGTGATCTGCAGTAGTAA 57.977 34.615 14.67 2.69 0.00 2.24
823 840 7.507277 AGAGGATATTTGTGATCTGCAGTAGTA 59.493 37.037 14.67 0.00 0.00 1.82
824 841 6.326064 AGAGGATATTTGTGATCTGCAGTAGT 59.674 38.462 14.67 0.78 0.00 2.73
825 842 6.645827 CAGAGGATATTTGTGATCTGCAGTAG 59.354 42.308 14.67 0.00 0.00 2.57
1206 1236 1.153756 CAGGGGATTGGGGGTATGC 59.846 63.158 0.00 0.00 0.00 3.14
1208 1238 2.091283 GGCAGGGGATTGGGGGTAT 61.091 63.158 0.00 0.00 0.00 2.73
1209 1239 2.698406 GGCAGGGGATTGGGGGTA 60.698 66.667 0.00 0.00 0.00 3.69
1462 1503 1.383525 GGGACGGTGGGGATTAGGA 60.384 63.158 0.00 0.00 0.00 2.94
1660 1704 7.586300 GTGACGAGTAAGTAAACAGTAAACGTA 59.414 37.037 0.00 0.00 0.00 3.57
1815 1864 6.100004 TCCTGATTTTCGAACAGAGTATGAC 58.900 40.000 14.07 0.00 34.07 3.06
1846 1898 5.240623 TGAAACGCAAATTAGTCAAGGTGAT 59.759 36.000 0.00 0.00 0.00 3.06
1847 1899 4.576873 TGAAACGCAAATTAGTCAAGGTGA 59.423 37.500 0.00 0.00 0.00 4.02
2118 2182 9.586150 CTTATAAATAGCAAGAAGTATTGTGCG 57.414 33.333 0.00 0.00 39.86 5.34
2133 2197 9.490379 AGCACAACCATACTACTTATAAATAGC 57.510 33.333 0.90 0.00 0.00 2.97
2392 2463 5.505819 GGGAGAAAAACAGCACTGTAGAAAC 60.506 44.000 3.26 0.00 44.13 2.78
2416 2487 1.893808 GATACAGCGGGGCATGTGG 60.894 63.158 0.00 0.00 0.00 4.17
2417 2488 0.747644 TTGATACAGCGGGGCATGTG 60.748 55.000 0.00 0.00 0.00 3.21
2418 2489 0.183492 ATTGATACAGCGGGGCATGT 59.817 50.000 0.00 0.00 0.00 3.21
2419 2490 2.183478 TATTGATACAGCGGGGCATG 57.817 50.000 0.00 0.00 0.00 4.06
2420 2491 2.949177 TTATTGATACAGCGGGGCAT 57.051 45.000 0.00 0.00 0.00 4.40
2421 2492 2.949177 ATTATTGATACAGCGGGGCA 57.051 45.000 0.00 0.00 0.00 5.36
2422 2493 3.439129 GGTTATTATTGATACAGCGGGGC 59.561 47.826 0.00 0.00 0.00 5.80
2424 2495 6.206634 ACATTGGTTATTATTGATACAGCGGG 59.793 38.462 0.00 0.00 0.00 6.13
2425 2496 7.077605 CACATTGGTTATTATTGATACAGCGG 58.922 38.462 0.00 0.00 0.00 5.52
2426 2497 6.578545 GCACATTGGTTATTATTGATACAGCG 59.421 38.462 0.00 0.00 0.00 5.18
2427 2498 6.863126 GGCACATTGGTTATTATTGATACAGC 59.137 38.462 0.00 0.00 0.00 4.40
2430 2535 7.283625 TGGGCACATTGGTTATTATTGATAC 57.716 36.000 0.00 0.00 0.00 2.24
2436 2541 8.261349 ACAATATTGGGCACATTGGTTATTAT 57.739 30.769 19.37 0.00 34.63 1.28
2437 2542 7.667575 ACAATATTGGGCACATTGGTTATTA 57.332 32.000 19.37 0.00 34.63 0.98
2458 2563 2.875672 GCTTCACCATGAGCAGGTACAA 60.876 50.000 0.00 0.00 37.23 2.41
2459 2564 1.339055 GCTTCACCATGAGCAGGTACA 60.339 52.381 0.00 0.00 37.23 2.90
2460 2565 1.373570 GCTTCACCATGAGCAGGTAC 58.626 55.000 0.00 0.00 37.23 3.34
2461 2566 0.108186 CGCTTCACCATGAGCAGGTA 60.108 55.000 0.00 0.00 37.23 3.08
2462 2567 1.376424 CGCTTCACCATGAGCAGGT 60.376 57.895 0.00 0.00 40.85 4.00
2463 2568 1.376424 ACGCTTCACCATGAGCAGG 60.376 57.895 0.00 0.00 0.00 4.85
2464 2569 1.792301 CACGCTTCACCATGAGCAG 59.208 57.895 0.00 0.00 0.00 4.24
2465 2570 2.327343 GCACGCTTCACCATGAGCA 61.327 57.895 0.00 0.00 0.00 4.26
2466 2571 1.975363 GAGCACGCTTCACCATGAGC 61.975 60.000 0.00 0.00 0.00 4.26
2467 2572 0.671472 TGAGCACGCTTCACCATGAG 60.671 55.000 0.00 0.00 0.00 2.90
2468 2573 0.250252 TTGAGCACGCTTCACCATGA 60.250 50.000 0.00 0.00 0.00 3.07
2469 2574 0.592637 TTTGAGCACGCTTCACCATG 59.407 50.000 0.00 0.00 0.00 3.66
2470 2575 1.470098 GATTTGAGCACGCTTCACCAT 59.530 47.619 0.00 0.00 0.00 3.55
2471 2576 0.874390 GATTTGAGCACGCTTCACCA 59.126 50.000 0.00 0.00 0.00 4.17
2472 2577 1.135859 CAGATTTGAGCACGCTTCACC 60.136 52.381 0.00 0.00 0.00 4.02
2473 2578 1.135859 CCAGATTTGAGCACGCTTCAC 60.136 52.381 0.00 0.00 0.00 3.18
2507 2612 9.679661 ACATTGGTTATTACAGTATGAATGTCA 57.320 29.630 0.00 0.00 39.69 3.58
2516 2621 8.009622 TGACGGATACATTGGTTATTACAGTA 57.990 34.615 0.00 0.00 0.00 2.74
2520 2625 6.518493 TCCTGACGGATACATTGGTTATTAC 58.482 40.000 0.00 0.00 33.30 1.89
2523 2628 5.130477 ACTTCCTGACGGATACATTGGTTAT 59.870 40.000 0.00 0.00 39.58 1.89
2524 2629 4.468510 ACTTCCTGACGGATACATTGGTTA 59.531 41.667 0.00 0.00 39.58 2.85
2526 2631 2.838202 ACTTCCTGACGGATACATTGGT 59.162 45.455 0.00 0.00 39.58 3.67
2527 2632 3.543680 ACTTCCTGACGGATACATTGG 57.456 47.619 0.00 0.00 39.58 3.16
2528 2633 5.515797 TCTACTTCCTGACGGATACATTG 57.484 43.478 0.00 0.00 39.58 2.82
2529 2634 6.323996 TCATTCTACTTCCTGACGGATACATT 59.676 38.462 0.00 0.00 39.58 2.71
2530 2635 5.833667 TCATTCTACTTCCTGACGGATACAT 59.166 40.000 0.00 0.00 39.58 2.29
2531 2636 5.198207 TCATTCTACTTCCTGACGGATACA 58.802 41.667 0.00 0.00 39.58 2.29
2532 2637 5.769484 TCATTCTACTTCCTGACGGATAC 57.231 43.478 0.00 0.00 39.58 2.24
2539 2644 6.064717 TCAGATCGATCATTCTACTTCCTGA 58.935 40.000 26.47 13.61 0.00 3.86
2554 2659 6.927936 CAGACAATTAACTGGATCAGATCGAT 59.072 38.462 0.00 0.00 36.91 3.59
2573 2678 3.073798 TCTTTGTTCTATGGCCCAGACAA 59.926 43.478 0.00 7.66 0.00 3.18
2589 2694 9.219603 TCGATGATTGAATTAAAGTCTCTTTGT 57.780 29.630 5.19 0.00 0.00 2.83
2615 2720 6.482308 GCGTCCACAAATATATACTTTCAGGT 59.518 38.462 0.00 0.00 0.00 4.00
2622 2727 3.006537 AGGCGCGTCCACAAATATATACT 59.993 43.478 19.30 0.00 37.29 2.12
2626 2731 2.206750 GAAGGCGCGTCCACAAATATA 58.793 47.619 19.30 0.00 37.29 0.86
2627 2732 1.014352 GAAGGCGCGTCCACAAATAT 58.986 50.000 19.30 0.00 37.29 1.28
2631 2738 3.793775 TTCGAAGGCGCGTCCACAA 62.794 57.895 19.30 0.48 37.29 3.33
2638 2745 4.559386 GCACGATTCGAAGGCGCG 62.559 66.667 19.21 0.00 37.46 6.86
2643 2750 1.354040 AGAAGCAGCACGATTCGAAG 58.646 50.000 13.95 6.01 44.94 3.79
2644 2751 2.647529 TAGAAGCAGCACGATTCGAA 57.352 45.000 13.95 0.00 44.94 3.71
2645 2752 2.647529 TTAGAAGCAGCACGATTCGA 57.352 45.000 13.95 0.00 44.94 3.71
2646 2753 5.005779 ACTTTATTAGAAGCAGCACGATTCG 59.994 40.000 4.14 4.14 44.94 3.34
2647 2754 6.351327 ACTTTATTAGAAGCAGCACGATTC 57.649 37.500 0.00 0.00 40.46 2.52
2648 2755 7.042335 AGTACTTTATTAGAAGCAGCACGATT 58.958 34.615 0.00 0.00 0.00 3.34
2649 2756 6.574350 AGTACTTTATTAGAAGCAGCACGAT 58.426 36.000 0.00 0.00 0.00 3.73
2650 2757 5.962433 AGTACTTTATTAGAAGCAGCACGA 58.038 37.500 0.00 0.00 0.00 4.35
2651 2758 6.973474 ACTAGTACTTTATTAGAAGCAGCACG 59.027 38.462 0.00 0.00 0.00 5.34
2652 2759 9.968870 ATACTAGTACTTTATTAGAAGCAGCAC 57.031 33.333 4.31 0.00 0.00 4.40
2720 2830 6.602410 TTTTTCAACTATGGCAATGGATCA 57.398 33.333 0.00 0.00 0.00 2.92
2726 2836 5.180271 CCAGCATTTTTCAACTATGGCAAT 58.820 37.500 0.00 0.00 0.00 3.56
2732 2842 5.012239 TGAGAGCCAGCATTTTTCAACTAT 58.988 37.500 0.00 0.00 0.00 2.12
2733 2843 4.397420 TGAGAGCCAGCATTTTTCAACTA 58.603 39.130 0.00 0.00 0.00 2.24
2760 2871 5.983540 AGATCTCAAGAATACTCAACCACC 58.016 41.667 0.00 0.00 0.00 4.61
2763 2874 9.003658 TGAAAAAGATCTCAAGAATACTCAACC 57.996 33.333 0.00 0.00 0.00 3.77
2773 2884 7.219322 TGTGTCTGATGAAAAAGATCTCAAGA 58.781 34.615 0.00 0.00 0.00 3.02
2804 2915 8.764287 CCTTTGTTGAACACTTCCAATTAATTC 58.236 33.333 0.00 0.00 0.00 2.17
2810 2921 4.956075 ACTCCTTTGTTGAACACTTCCAAT 59.044 37.500 0.00 0.00 0.00 3.16
2828 2939 4.929808 CACGAGTGCAGTATTTTAACTCCT 59.070 41.667 0.00 0.00 35.00 3.69
2832 2943 5.050634 TGTCACACGAGTGCAGTATTTTAAC 60.051 40.000 8.23 0.00 45.49 2.01
2834 2945 4.623002 TGTCACACGAGTGCAGTATTTTA 58.377 39.130 8.23 0.00 45.49 1.52
2838 2949 2.610433 CATGTCACACGAGTGCAGTAT 58.390 47.619 8.23 0.00 45.49 2.12
2839 2950 1.934849 GCATGTCACACGAGTGCAGTA 60.935 52.381 8.23 0.00 45.49 2.74
2840 2951 1.224069 GCATGTCACACGAGTGCAGT 61.224 55.000 8.23 0.00 45.49 4.40
2841 2952 1.494628 GCATGTCACACGAGTGCAG 59.505 57.895 8.23 5.63 45.49 4.41
2842 2953 2.309501 CGCATGTCACACGAGTGCA 61.310 57.895 8.23 9.90 45.49 4.57
2843 2954 1.949015 CTCGCATGTCACACGAGTGC 61.949 60.000 15.05 0.66 46.19 4.40
2844 2955 2.065193 CTCGCATGTCACACGAGTG 58.935 57.895 15.05 6.65 46.19 3.51
2845 2956 4.559835 CTCGCATGTCACACGAGT 57.440 55.556 15.05 0.00 46.19 4.18
2847 2958 1.284297 CTTGCTCGCATGTCACACGA 61.284 55.000 0.00 0.00 0.00 4.35
2848 2959 1.131218 CTTGCTCGCATGTCACACG 59.869 57.895 0.00 0.00 0.00 4.49
2857 2968 3.370978 GCTCAGTTATTTACTTGCTCGCA 59.629 43.478 0.00 0.00 33.85 5.10
2860 2971 6.487689 AGTTGCTCAGTTATTTACTTGCTC 57.512 37.500 0.00 0.00 35.77 4.26
2902 3016 9.471702 AACTGAAAGAGACCATGAAATCAATAT 57.528 29.630 0.00 0.00 37.43 1.28
2914 3036 3.644966 AACACCAACTGAAAGAGACCA 57.355 42.857 0.00 0.00 37.43 4.02
2915 3037 3.066760 CCAAACACCAACTGAAAGAGACC 59.933 47.826 0.00 0.00 37.43 3.85
2916 3038 3.694566 ACCAAACACCAACTGAAAGAGAC 59.305 43.478 0.00 0.00 37.43 3.36
2943 3065 4.881157 AAGGCCCCATAAGATAACAACT 57.119 40.909 0.00 0.00 0.00 3.16
2946 3068 3.201266 ACGAAAGGCCCCATAAGATAACA 59.799 43.478 0.00 0.00 0.00 2.41
2948 3070 3.201266 ACACGAAAGGCCCCATAAGATAA 59.799 43.478 0.00 0.00 0.00 1.75
2955 3077 1.299976 GAGACACGAAAGGCCCCAT 59.700 57.895 0.00 0.00 0.00 4.00
2962 3084 6.183360 GGAATAATGAACAGGAGACACGAAAG 60.183 42.308 0.00 0.00 0.00 2.62
2964 3086 5.175859 GGAATAATGAACAGGAGACACGAA 58.824 41.667 0.00 0.00 0.00 3.85
2967 3089 4.636206 GTGGGAATAATGAACAGGAGACAC 59.364 45.833 0.00 0.00 0.00 3.67
2970 3092 5.429762 AGATGTGGGAATAATGAACAGGAGA 59.570 40.000 0.00 0.00 0.00 3.71
3023 3145 0.955428 GGAACTGCATTCGGCTGACA 60.955 55.000 0.00 0.00 43.53 3.58
3026 3148 1.667236 TATGGAACTGCATTCGGCTG 58.333 50.000 0.00 0.00 45.15 4.85
3028 3150 1.335324 GCATATGGAACTGCATTCGGC 60.335 52.381 4.56 0.00 45.13 5.54
3038 3161 5.181245 ACTGTAACTTGTGTGCATATGGAAC 59.819 40.000 4.56 4.02 0.00 3.62
3049 3172 4.905429 TCATATGGCACTGTAACTTGTGT 58.095 39.130 2.13 0.00 36.63 3.72
3051 3174 4.396166 GCTTCATATGGCACTGTAACTTGT 59.604 41.667 2.13 0.00 0.00 3.16
3059 3182 5.359756 TGTTACTAGCTTCATATGGCACTG 58.640 41.667 2.13 0.00 0.00 3.66
3067 3190 8.642432 ACTGATGCTTATGTTACTAGCTTCATA 58.358 33.333 16.45 0.00 43.57 2.15
3082 3205 5.655532 AGCAAATTCTTCCACTGATGCTTAT 59.344 36.000 0.00 0.00 39.69 1.73
3085 3208 3.428532 AGCAAATTCTTCCACTGATGCT 58.571 40.909 0.00 0.00 38.01 3.79
3089 3212 5.048504 GTCATGAAGCAAATTCTTCCACTGA 60.049 40.000 0.00 3.48 41.23 3.41
3097 3220 4.521639 TGCTGAAGTCATGAAGCAAATTCT 59.478 37.500 15.71 0.00 42.42 2.40
3098 3221 4.801891 TGCTGAAGTCATGAAGCAAATTC 58.198 39.130 15.71 1.55 42.42 2.17
3099 3222 4.859304 TGCTGAAGTCATGAAGCAAATT 57.141 36.364 15.71 0.00 42.42 1.82
3103 3226 4.859304 ATTTTGCTGAAGTCATGAAGCA 57.141 36.364 14.39 14.39 43.60 3.91
3104 3227 6.535274 AAAATTTTGCTGAAGTCATGAAGC 57.465 33.333 9.71 9.71 36.18 3.86
3105 3228 8.578308 TGTAAAATTTTGCTGAAGTCATGAAG 57.422 30.769 18.09 0.00 0.00 3.02
3106 3229 8.196771 ACTGTAAAATTTTGCTGAAGTCATGAA 58.803 29.630 25.08 1.35 0.00 2.57
3107 3230 7.715657 ACTGTAAAATTTTGCTGAAGTCATGA 58.284 30.769 25.08 0.00 0.00 3.07
3108 3231 7.935338 ACTGTAAAATTTTGCTGAAGTCATG 57.065 32.000 25.08 0.00 0.00 3.07
3110 3233 9.296400 GTTAACTGTAAAATTTTGCTGAAGTCA 57.704 29.630 25.08 5.18 0.00 3.41
3111 3234 9.296400 TGTTAACTGTAAAATTTTGCTGAAGTC 57.704 29.630 25.08 15.31 0.00 3.01
3112 3235 9.816354 ATGTTAACTGTAAAATTTTGCTGAAGT 57.184 25.926 25.08 15.47 0.00 3.01
3114 3237 9.255304 GGATGTTAACTGTAAAATTTTGCTGAA 57.745 29.630 25.08 13.81 0.00 3.02
3115 3238 7.593273 CGGATGTTAACTGTAAAATTTTGCTGA 59.407 33.333 25.08 8.96 0.00 4.26
3116 3239 7.593273 TCGGATGTTAACTGTAAAATTTTGCTG 59.407 33.333 19.37 19.37 0.00 4.41
3117 3240 7.653647 TCGGATGTTAACTGTAAAATTTTGCT 58.346 30.769 18.09 3.10 0.00 3.91
3118 3241 7.061789 CCTCGGATGTTAACTGTAAAATTTTGC 59.938 37.037 13.76 12.64 0.00 3.68
3119 3242 8.293867 TCCTCGGATGTTAACTGTAAAATTTTG 58.706 33.333 13.76 0.00 0.00 2.44
3120 3243 8.398878 TCCTCGGATGTTAACTGTAAAATTTT 57.601 30.769 8.75 8.75 0.00 1.82
3121 3244 7.989416 TCCTCGGATGTTAACTGTAAAATTT 57.011 32.000 7.22 0.00 0.00 1.82
3122 3245 7.360607 CGTTCCTCGGATGTTAACTGTAAAATT 60.361 37.037 7.22 0.00 35.71 1.82
3123 3246 6.091713 CGTTCCTCGGATGTTAACTGTAAAAT 59.908 38.462 7.22 0.00 35.71 1.82
3124 3247 5.406175 CGTTCCTCGGATGTTAACTGTAAAA 59.594 40.000 7.22 0.00 35.71 1.52
3125 3248 4.925054 CGTTCCTCGGATGTTAACTGTAAA 59.075 41.667 7.22 0.00 35.71 2.01
3126 3249 4.022068 ACGTTCCTCGGATGTTAACTGTAA 60.022 41.667 7.22 0.00 44.69 2.41
3127 3250 3.507233 ACGTTCCTCGGATGTTAACTGTA 59.493 43.478 7.22 0.00 44.69 2.74
3128 3251 2.298163 ACGTTCCTCGGATGTTAACTGT 59.702 45.455 7.22 0.00 44.69 3.55
3129 3252 2.955614 ACGTTCCTCGGATGTTAACTG 58.044 47.619 7.22 0.00 44.69 3.16
3130 3253 3.672767 AACGTTCCTCGGATGTTAACT 57.327 42.857 7.22 0.00 44.69 2.24
3131 3254 6.128472 ACAATTAACGTTCCTCGGATGTTAAC 60.128 38.462 18.39 0.00 44.69 2.01
3132 3255 5.933463 ACAATTAACGTTCCTCGGATGTTAA 59.067 36.000 18.35 18.35 44.69 2.01
3133 3256 5.481105 ACAATTAACGTTCCTCGGATGTTA 58.519 37.500 2.82 7.03 44.69 2.41
3134 3257 4.320870 ACAATTAACGTTCCTCGGATGTT 58.679 39.130 2.82 8.52 44.69 2.71
3135 3258 3.934068 ACAATTAACGTTCCTCGGATGT 58.066 40.909 2.82 0.00 44.69 3.06
3136 3259 4.025979 GCTACAATTAACGTTCCTCGGATG 60.026 45.833 2.82 0.00 44.69 3.51
3137 3260 4.117685 GCTACAATTAACGTTCCTCGGAT 58.882 43.478 2.82 0.00 44.69 4.18
3138 3261 3.056678 TGCTACAATTAACGTTCCTCGGA 60.057 43.478 2.82 0.00 44.69 4.55
3139 3262 3.255725 TGCTACAATTAACGTTCCTCGG 58.744 45.455 2.82 0.00 44.69 4.63
3140 3263 4.914312 TTGCTACAATTAACGTTCCTCG 57.086 40.909 2.82 0.00 46.00 4.63
3141 3264 6.084277 CCTTTTGCTACAATTAACGTTCCTC 58.916 40.000 2.82 0.00 0.00 3.71
3142 3265 5.564063 GCCTTTTGCTACAATTAACGTTCCT 60.564 40.000 2.82 0.00 36.87 3.36
3143 3266 4.619760 GCCTTTTGCTACAATTAACGTTCC 59.380 41.667 2.82 0.00 36.87 3.62
3144 3267 5.740838 GCCTTTTGCTACAATTAACGTTC 57.259 39.130 2.82 0.00 36.87 3.95
3158 3281 1.126662 GCGCATTTTACAGCCTTTTGC 59.873 47.619 0.30 0.00 41.71 3.68
3159 3282 1.726248 GGCGCATTTTACAGCCTTTTG 59.274 47.619 10.83 0.00 45.67 2.44
3160 3283 2.078849 GGCGCATTTTACAGCCTTTT 57.921 45.000 10.83 0.00 45.67 2.27
3161 3284 3.812577 GGCGCATTTTACAGCCTTT 57.187 47.368 10.83 0.00 45.67 3.11
3165 3288 2.008752 AATTGGGCGCATTTTACAGC 57.991 45.000 10.83 0.00 0.00 4.40
3166 3289 5.445806 GCTTAAAATTGGGCGCATTTTACAG 60.446 40.000 19.81 18.14 36.34 2.74
3167 3290 4.390297 GCTTAAAATTGGGCGCATTTTACA 59.610 37.500 19.81 10.94 36.34 2.41
3168 3291 4.390297 TGCTTAAAATTGGGCGCATTTTAC 59.610 37.500 19.81 11.66 36.34 2.01
3169 3292 4.569943 TGCTTAAAATTGGGCGCATTTTA 58.430 34.783 19.81 18.95 35.78 1.52
3170 3293 3.406764 TGCTTAAAATTGGGCGCATTTT 58.593 36.364 17.63 17.63 37.54 1.82
3171 3294 3.051081 TGCTTAAAATTGGGCGCATTT 57.949 38.095 10.83 4.50 0.00 2.32
3172 3295 2.758736 TGCTTAAAATTGGGCGCATT 57.241 40.000 10.83 0.00 0.00 3.56
3173 3296 2.758736 TTGCTTAAAATTGGGCGCAT 57.241 40.000 10.83 0.00 0.00 4.73
3174 3297 2.758736 ATTGCTTAAAATTGGGCGCA 57.241 40.000 10.83 0.00 0.00 6.09
3175 3298 5.556194 CGAATAATTGCTTAAAATTGGGCGC 60.556 40.000 0.00 0.00 32.16 6.53
3176 3299 5.051106 CCGAATAATTGCTTAAAATTGGGCG 60.051 40.000 0.00 0.00 32.16 6.13
3177 3300 5.815222 ACCGAATAATTGCTTAAAATTGGGC 59.185 36.000 0.00 0.00 32.16 5.36
3178 3301 7.038659 TGACCGAATAATTGCTTAAAATTGGG 58.961 34.615 0.00 0.00 32.16 4.12
3179 3302 8.472683 TTGACCGAATAATTGCTTAAAATTGG 57.527 30.769 0.00 0.00 32.16 3.16
3180 3303 9.139174 ACTTGACCGAATAATTGCTTAAAATTG 57.861 29.630 0.00 0.00 32.16 2.32
3181 3304 9.139174 CACTTGACCGAATAATTGCTTAAAATT 57.861 29.630 0.00 0.00 34.24 1.82
3182 3305 7.759433 CCACTTGACCGAATAATTGCTTAAAAT 59.241 33.333 0.00 0.00 0.00 1.82
3183 3306 7.087639 CCACTTGACCGAATAATTGCTTAAAA 58.912 34.615 0.00 0.00 0.00 1.52
3184 3307 6.616947 CCACTTGACCGAATAATTGCTTAAA 58.383 36.000 0.00 0.00 0.00 1.52
3185 3308 5.392595 GCCACTTGACCGAATAATTGCTTAA 60.393 40.000 0.00 0.00 0.00 1.85
3186 3309 4.095782 GCCACTTGACCGAATAATTGCTTA 59.904 41.667 0.00 0.00 0.00 3.09
3187 3310 3.119495 GCCACTTGACCGAATAATTGCTT 60.119 43.478 0.00 0.00 0.00 3.91
3188 3311 2.423538 GCCACTTGACCGAATAATTGCT 59.576 45.455 0.00 0.00 0.00 3.91
3189 3312 2.163412 TGCCACTTGACCGAATAATTGC 59.837 45.455 0.00 0.00 0.00 3.56
3190 3313 4.637483 ATGCCACTTGACCGAATAATTG 57.363 40.909 0.00 0.00 0.00 2.32
3191 3314 5.189928 TGTATGCCACTTGACCGAATAATT 58.810 37.500 0.00 0.00 0.00 1.40
3192 3315 4.776349 TGTATGCCACTTGACCGAATAAT 58.224 39.130 0.00 0.00 0.00 1.28
3193 3316 4.081365 TCTGTATGCCACTTGACCGAATAA 60.081 41.667 0.00 0.00 0.00 1.40
3194 3317 3.449377 TCTGTATGCCACTTGACCGAATA 59.551 43.478 0.00 0.00 0.00 1.75
3195 3318 2.236146 TCTGTATGCCACTTGACCGAAT 59.764 45.455 0.00 0.00 0.00 3.34
3196 3319 1.621317 TCTGTATGCCACTTGACCGAA 59.379 47.619 0.00 0.00 0.00 4.30
3197 3320 1.262417 TCTGTATGCCACTTGACCGA 58.738 50.000 0.00 0.00 0.00 4.69
3198 3321 2.315925 ATCTGTATGCCACTTGACCG 57.684 50.000 0.00 0.00 0.00 4.79
3199 3322 7.986085 ATATTTATCTGTATGCCACTTGACC 57.014 36.000 0.00 0.00 0.00 4.02
3204 3327 9.698309 GCGATATATATTTATCTGTATGCCACT 57.302 33.333 10.33 0.00 0.00 4.00
3205 3328 9.476202 TGCGATATATATTTATCTGTATGCCAC 57.524 33.333 10.33 0.00 0.00 5.01
3206 3329 9.696917 CTGCGATATATATTTATCTGTATGCCA 57.303 33.333 10.33 0.00 0.00 4.92
3207 3330 9.698309 ACTGCGATATATATTTATCTGTATGCC 57.302 33.333 10.33 0.00 0.00 4.40
3218 3341 9.376075 CCTCATTGAAGACTGCGATATATATTT 57.624 33.333 0.00 0.00 0.00 1.40
3219 3342 8.535335 ACCTCATTGAAGACTGCGATATATATT 58.465 33.333 0.00 0.00 0.00 1.28
3220 3343 8.072321 ACCTCATTGAAGACTGCGATATATAT 57.928 34.615 0.00 0.00 0.00 0.86
3221 3344 7.468141 ACCTCATTGAAGACTGCGATATATA 57.532 36.000 0.00 0.00 0.00 0.86
3222 3345 6.352016 ACCTCATTGAAGACTGCGATATAT 57.648 37.500 0.00 0.00 0.00 0.86
3223 3346 5.791336 ACCTCATTGAAGACTGCGATATA 57.209 39.130 0.00 0.00 0.00 0.86
3224 3347 4.679373 ACCTCATTGAAGACTGCGATAT 57.321 40.909 0.00 0.00 0.00 1.63
3225 3348 4.471904 AACCTCATTGAAGACTGCGATA 57.528 40.909 0.00 0.00 0.00 2.92
3226 3349 3.340814 AACCTCATTGAAGACTGCGAT 57.659 42.857 0.00 0.00 0.00 4.58
3227 3350 2.839486 AACCTCATTGAAGACTGCGA 57.161 45.000 0.00 0.00 0.00 5.10
3228 3351 3.589988 AGTAACCTCATTGAAGACTGCG 58.410 45.455 0.00 0.00 0.00 5.18
3229 3352 5.351740 GGTAAGTAACCTCATTGAAGACTGC 59.648 44.000 0.00 0.00 45.75 4.40
3230 3353 6.969828 GGTAAGTAACCTCATTGAAGACTG 57.030 41.667 0.00 0.00 45.75 3.51
3244 3367 9.208022 AGTTTTCACGTAATTAGGGTAAGTAAC 57.792 33.333 9.79 5.95 0.00 2.50
3245 3368 9.777297 AAGTTTTCACGTAATTAGGGTAAGTAA 57.223 29.630 9.79 0.00 0.00 2.24
3246 3369 9.777297 AAAGTTTTCACGTAATTAGGGTAAGTA 57.223 29.630 9.79 0.00 0.00 2.24
3247 3370 8.562052 CAAAGTTTTCACGTAATTAGGGTAAGT 58.438 33.333 9.79 0.00 0.00 2.24
3248 3371 8.562052 ACAAAGTTTTCACGTAATTAGGGTAAG 58.438 33.333 9.79 0.00 0.00 2.34
3249 3372 8.344098 CACAAAGTTTTCACGTAATTAGGGTAA 58.656 33.333 9.79 1.19 0.00 2.85
3250 3373 7.714377 TCACAAAGTTTTCACGTAATTAGGGTA 59.286 33.333 9.79 0.00 0.00 3.69
3251 3374 6.543100 TCACAAAGTTTTCACGTAATTAGGGT 59.457 34.615 9.79 0.00 0.00 4.34
3252 3375 6.961576 TCACAAAGTTTTCACGTAATTAGGG 58.038 36.000 9.79 0.00 0.00 3.53
3253 3376 8.286800 TGATCACAAAGTTTTCACGTAATTAGG 58.713 33.333 3.64 3.64 0.00 2.69
3254 3377 9.103048 GTGATCACAAAGTTTTCACGTAATTAG 57.897 33.333 21.07 0.00 0.00 1.73
3255 3378 8.996988 GTGATCACAAAGTTTTCACGTAATTA 57.003 30.769 21.07 0.00 0.00 1.40
3256 3379 7.908193 GTGATCACAAAGTTTTCACGTAATT 57.092 32.000 21.07 0.00 0.00 1.40
3262 3385 4.287238 ACCGTGATCACAAAGTTTTCAC 57.713 40.909 24.93 7.73 34.70 3.18
3263 3386 6.438259 TTTACCGTGATCACAAAGTTTTCA 57.562 33.333 24.93 2.31 0.00 2.69
3264 3387 7.924103 ATTTTACCGTGATCACAAAGTTTTC 57.076 32.000 24.93 0.00 0.00 2.29
3265 3388 7.976734 TGAATTTTACCGTGATCACAAAGTTTT 59.023 29.630 24.93 12.11 0.00 2.43
3266 3389 7.484975 TGAATTTTACCGTGATCACAAAGTTT 58.515 30.769 24.93 14.09 0.00 2.66
3267 3390 7.033530 TGAATTTTACCGTGATCACAAAGTT 57.966 32.000 24.93 18.61 0.00 2.66
3268 3391 6.262273 ACTGAATTTTACCGTGATCACAAAGT 59.738 34.615 24.93 19.47 0.00 2.66
3269 3392 6.668323 ACTGAATTTTACCGTGATCACAAAG 58.332 36.000 24.93 15.00 0.00 2.77
3270 3393 6.627395 ACTGAATTTTACCGTGATCACAAA 57.373 33.333 24.93 17.12 0.00 2.83
3271 3394 6.932400 ACTACTGAATTTTACCGTGATCACAA 59.068 34.615 24.93 11.85 0.00 3.33
3272 3395 6.460781 ACTACTGAATTTTACCGTGATCACA 58.539 36.000 24.93 5.21 0.00 3.58
3273 3396 6.963049 ACTACTGAATTTTACCGTGATCAC 57.037 37.500 16.21 16.21 0.00 3.06
3274 3397 8.089597 TGTAACTACTGAATTTTACCGTGATCA 58.910 33.333 0.00 0.00 0.00 2.92
3318 3598 2.171840 TGTCAGTCTAGGCCTTCAGAC 58.828 52.381 23.16 23.16 41.25 3.51
3320 3600 2.828520 TCTTGTCAGTCTAGGCCTTCAG 59.171 50.000 12.58 2.45 0.00 3.02
3321 3601 2.889512 TCTTGTCAGTCTAGGCCTTCA 58.110 47.619 12.58 0.00 0.00 3.02
3322 3602 3.963428 TTCTTGTCAGTCTAGGCCTTC 57.037 47.619 12.58 1.81 0.00 3.46
3326 3606 4.997395 TCATGTTTTCTTGTCAGTCTAGGC 59.003 41.667 0.00 0.00 0.00 3.93
3327 3607 6.708054 ACTTCATGTTTTCTTGTCAGTCTAGG 59.292 38.462 0.00 0.00 0.00 3.02
3328 3608 7.721286 ACTTCATGTTTTCTTGTCAGTCTAG 57.279 36.000 0.00 0.00 0.00 2.43
3329 3609 9.261180 CTAACTTCATGTTTTCTTGTCAGTCTA 57.739 33.333 0.00 0.00 39.89 2.59
3330 3610 7.987458 TCTAACTTCATGTTTTCTTGTCAGTCT 59.013 33.333 0.00 0.00 39.89 3.24
3331 3611 8.142994 TCTAACTTCATGTTTTCTTGTCAGTC 57.857 34.615 0.00 0.00 39.89 3.51
3332 3612 8.682936 ATCTAACTTCATGTTTTCTTGTCAGT 57.317 30.769 0.00 0.00 39.89 3.41
3333 3613 9.956720 AAATCTAACTTCATGTTTTCTTGTCAG 57.043 29.630 0.00 0.00 39.89 3.51
3334 3614 9.734620 CAAATCTAACTTCATGTTTTCTTGTCA 57.265 29.630 0.00 0.00 39.89 3.58
3335 3615 9.736023 ACAAATCTAACTTCATGTTTTCTTGTC 57.264 29.630 0.00 0.00 39.89 3.18
3371 3651 8.685427 CACCCAATCATACAAATTCAGATAACA 58.315 33.333 0.00 0.00 0.00 2.41
3387 3667 3.023119 TGCTTAAATCGCACCCAATCAT 58.977 40.909 0.00 0.00 31.40 2.45
3388 3668 2.441410 TGCTTAAATCGCACCCAATCA 58.559 42.857 0.00 0.00 31.40 2.57
3414 3694 9.582648 ACAAAAGTCACAGGGTAAGTTTATTAT 57.417 29.630 0.00 0.00 0.00 1.28
3428 3708 5.894807 ACAGAAAATGGACAAAAGTCACAG 58.105 37.500 0.00 0.00 0.00 3.66
3439 3719 9.827411 GAGAATACTTTTGTACAGAAAATGGAC 57.173 33.333 0.03 0.00 43.85 4.02
3440 3720 9.567776 TGAGAATACTTTTGTACAGAAAATGGA 57.432 29.630 0.03 0.00 37.78 3.41
3450 3731 7.989826 AGATGCCAATGAGAATACTTTTGTAC 58.010 34.615 0.00 0.00 37.78 2.90
3461 3742 7.445402 GGCTACTTTAATAGATGCCAATGAGAA 59.555 37.037 0.00 0.00 41.68 2.87
3463 3744 6.939163 AGGCTACTTTAATAGATGCCAATGAG 59.061 38.462 17.53 0.00 43.20 2.90
3465 3746 7.148340 GCTAGGCTACTTTAATAGATGCCAATG 60.148 40.741 17.53 12.13 43.20 2.82
3466 3747 6.881602 GCTAGGCTACTTTAATAGATGCCAAT 59.118 38.462 17.53 8.63 43.20 3.16
3469 3750 6.043854 AGCTAGGCTACTTTAATAGATGCC 57.956 41.667 0.00 0.00 42.06 4.40
3515 3810 8.881743 GCTGAAAATATGCCATGAACATTTAAA 58.118 29.630 6.52 0.00 0.00 1.52
3517 3812 7.554211 TGCTGAAAATATGCCATGAACATTTA 58.446 30.769 6.52 0.00 0.00 1.40
3518 3813 6.408035 TGCTGAAAATATGCCATGAACATTT 58.592 32.000 6.52 0.00 0.00 2.32
3519 3814 5.979993 TGCTGAAAATATGCCATGAACATT 58.020 33.333 6.52 0.00 0.00 2.71
3521 3816 5.601583 ATGCTGAAAATATGCCATGAACA 57.398 34.783 0.00 0.00 0.00 3.18
3522 3817 5.277154 GCAATGCTGAAAATATGCCATGAAC 60.277 40.000 0.00 0.00 0.00 3.18
3523 3818 4.812091 GCAATGCTGAAAATATGCCATGAA 59.188 37.500 0.00 0.00 0.00 2.57
3525 3820 4.025229 GTGCAATGCTGAAAATATGCCATG 60.025 41.667 6.82 0.00 33.01 3.66
3537 3887 4.761227 TCACATAAAAGAGTGCAATGCTGA 59.239 37.500 6.82 0.00 35.76 4.26
3538 3888 5.050644 TCACATAAAAGAGTGCAATGCTG 57.949 39.130 6.82 0.00 35.76 4.41
3548 3898 6.037500 TCTCGATTGGCAATCACATAAAAGAG 59.962 38.462 32.71 26.41 37.78 2.85
3550 3900 6.122850 TCTCGATTGGCAATCACATAAAAG 57.877 37.500 32.71 17.74 37.78 2.27
3559 3909 4.314121 AGCTATCTTCTCGATTGGCAATC 58.686 43.478 26.58 26.58 34.37 2.67
3560 3910 4.202295 TGAGCTATCTTCTCGATTGGCAAT 60.202 41.667 13.54 13.54 34.37 3.56
3562 3912 2.695147 TGAGCTATCTTCTCGATTGGCA 59.305 45.455 0.00 0.00 34.37 4.92
3563 3913 3.377346 TGAGCTATCTTCTCGATTGGC 57.623 47.619 0.00 0.00 33.48 4.52
3564 3914 5.407995 GGAAATGAGCTATCTTCTCGATTGG 59.592 44.000 0.00 0.00 33.48 3.16
3602 3952 8.267620 ACAACCATTTCTTCTTTTTCCTTTTG 57.732 30.769 0.00 0.00 0.00 2.44
3651 4005 7.923344 CAGTAGTGCTGCAAGAATAAGTATAGT 59.077 37.037 2.77 0.00 38.52 2.12
3679 4033 1.528586 GTATATGCTGCCTCAAGTGCG 59.471 52.381 0.00 0.00 0.00 5.34
3766 4120 0.169672 CTCCGCTGCATCCAAAGTTG 59.830 55.000 0.00 0.00 0.00 3.16
3769 4123 2.768492 GCCTCCGCTGCATCCAAAG 61.768 63.158 0.00 0.00 0.00 2.77
3826 4180 1.296392 CTCCTCGGTGTCAATGCCA 59.704 57.895 0.00 0.00 0.00 4.92
3829 4183 0.898320 AGGACTCCTCGGTGTCAATG 59.102 55.000 17.08 0.00 39.53 2.82
3832 4186 0.323178 GGTAGGACTCCTCGGTGTCA 60.323 60.000 17.08 0.00 39.53 3.58
3898 4252 4.163458 ACTGAGTCCAAAACCTGAACTACA 59.837 41.667 0.00 0.00 0.00 2.74
4019 4379 2.349886 GTCCTCAGCATTCTTAACAGCG 59.650 50.000 0.00 0.00 0.00 5.18
4024 4384 2.497675 AGCTCGTCCTCAGCATTCTTAA 59.502 45.455 0.00 0.00 39.56 1.85
4043 4403 2.556287 CCAACGGCGTTCTTCAGC 59.444 61.111 24.21 0.00 0.00 4.26
4049 4409 2.396747 GAACCAACCCAACGGCGTTC 62.397 60.000 24.21 4.37 0.00 3.95
4076 4436 0.249868 TCACCTCAAAGGCGACACTG 60.250 55.000 0.00 0.00 39.63 3.66
4082 4442 1.413767 CGTCGATCACCTCAAAGGCG 61.414 60.000 0.00 0.00 39.63 5.52
4169 4529 5.246307 AGTTTGATGGCCTACAGTTTAGTC 58.754 41.667 3.32 0.00 0.00 2.59
4177 4537 5.125356 CACATGATAGTTTGATGGCCTACA 58.875 41.667 3.32 0.52 0.00 2.74
4191 4551 4.141620 ACAAGGGTAGGAAGCACATGATAG 60.142 45.833 0.00 0.00 0.00 2.08
4192 4552 3.780294 ACAAGGGTAGGAAGCACATGATA 59.220 43.478 0.00 0.00 0.00 2.15
4195 4555 2.496899 ACAAGGGTAGGAAGCACATG 57.503 50.000 0.00 0.00 0.00 3.21
4198 4558 3.197983 AGTGATACAAGGGTAGGAAGCAC 59.802 47.826 0.00 0.00 31.88 4.40
4200 4560 3.798202 CAGTGATACAAGGGTAGGAAGC 58.202 50.000 0.00 0.00 31.88 3.86
4201 4561 3.197766 TGCAGTGATACAAGGGTAGGAAG 59.802 47.826 0.00 0.00 31.88 3.46
4204 4564 2.501723 AGTGCAGTGATACAAGGGTAGG 59.498 50.000 0.00 0.00 31.88 3.18
4205 4565 3.055819 ACAGTGCAGTGATACAAGGGTAG 60.056 47.826 28.02 0.00 31.88 3.18
4206 4566 2.903784 ACAGTGCAGTGATACAAGGGTA 59.096 45.455 28.02 0.00 0.00 3.69
4208 4568 2.479566 ACAGTGCAGTGATACAAGGG 57.520 50.000 28.02 0.00 0.00 3.95
4221 4619 5.008613 TCAGAACAAAATGGTAGAACAGTGC 59.991 40.000 0.00 0.00 0.00 4.40
4226 4624 7.437862 TGCATTTTCAGAACAAAATGGTAGAAC 59.562 33.333 16.50 3.93 46.92 3.01
4262 4660 4.863131 CGTGGTTCACATCCTAGTAGTTTC 59.137 45.833 0.00 0.00 33.40 2.78
4266 4664 2.481449 GGCGTGGTTCACATCCTAGTAG 60.481 54.545 0.00 0.00 33.40 2.57
4268 4666 0.249398 GGCGTGGTTCACATCCTAGT 59.751 55.000 0.00 0.00 33.40 2.57
4275 4673 1.885388 CAAGACGGCGTGGTTCACA 60.885 57.895 21.19 0.00 33.40 3.58
4299 4697 0.249120 CGTTCTCCACACCATAGCCA 59.751 55.000 0.00 0.00 0.00 4.75
4302 4700 0.806102 CGCCGTTCTCCACACCATAG 60.806 60.000 0.00 0.00 0.00 2.23
4305 4703 3.509137 GACGCCGTTCTCCACACCA 62.509 63.158 0.00 0.00 0.00 4.17
4326 4724 5.374921 CAGGAGTTCTTGATGAGCCAATAT 58.625 41.667 0.00 0.00 0.00 1.28
4356 4754 0.850100 AACCATTGTCACCCCAGTCA 59.150 50.000 0.00 0.00 0.00 3.41
4440 4838 3.119388 GCTATGGCATGAAGAGCAAACAA 60.119 43.478 10.98 0.00 38.54 2.83
4568 4970 0.888619 TGTCTGGCGAATCGAGACTT 59.111 50.000 20.12 0.00 46.68 3.01
4582 4984 5.565259 GCTGAAAACACGTTATTCATGTCTG 59.435 40.000 7.61 0.00 33.03 3.51
4885 5290 1.141053 ACGGAATGAGCCCCAAGTATC 59.859 52.381 0.00 0.00 0.00 2.24
4892 5297 1.379527 CTGTAAACGGAATGAGCCCC 58.620 55.000 0.00 0.00 0.00 5.80
4896 5301 4.868171 TCGAAATCCTGTAAACGGAATGAG 59.132 41.667 0.00 0.00 33.55 2.90
4932 5337 5.891551 GGCATCCTAATCCTTTACCTTTTCA 59.108 40.000 0.00 0.00 0.00 2.69
4975 5380 2.945440 TGAGGCCTCATGGAAAATTCCG 60.945 50.000 32.00 0.00 41.54 4.30
4998 5403 3.547746 TCCCCGCAATTCTTACCATTAC 58.452 45.455 0.00 0.00 0.00 1.89
5014 5419 5.897377 AACATGTTAGAAAAGATTCCCCG 57.103 39.130 9.97 0.00 36.12 5.73
5015 5420 7.116736 TCCTAACATGTTAGAAAAGATTCCCC 58.883 38.462 36.37 0.00 43.90 4.81
5081 5486 7.544622 CATGATATTTGCTTCATAGGATTGGG 58.455 38.462 0.00 0.00 31.50 4.12
5207 5654 0.952280 AAGAGACTCACGCTTCGTCA 59.048 50.000 5.02 0.00 38.32 4.35
5239 5686 2.032681 GGGAGAAGCCAGCGTTGT 59.967 61.111 0.00 0.00 38.95 3.32
5332 5812 0.664166 CAACAACGGAGGCAACATGC 60.664 55.000 0.00 0.00 44.08 4.06
5344 5824 4.083324 ACTTGCATCTTATCACCAACAACG 60.083 41.667 0.00 0.00 0.00 4.10
5386 5866 3.673338 CAGCTTGTTGAAACATGATGCAG 59.327 43.478 12.46 1.41 41.36 4.41
5409 5890 7.990917 ACACAACAAACATCAATACACACTTA 58.009 30.769 0.00 0.00 0.00 2.24
5518 5999 5.410067 GCCTGCTGCAAACATATCTAAAAA 58.590 37.500 3.02 0.00 40.77 1.94
5519 6000 4.997565 GCCTGCTGCAAACATATCTAAAA 58.002 39.130 3.02 0.00 40.77 1.52
5520 6001 4.637483 GCCTGCTGCAAACATATCTAAA 57.363 40.909 3.02 0.00 40.77 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.