Multiple sequence alignment - TraesCS5D01G213900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G213900 chr5D 100.000 3202 0 0 1 3202 323577896 323574695 0.000000e+00 5877
1 TraesCS5D01G213900 chr4D 98.787 2639 30 2 1 2638 467994849 467997486 0.000000e+00 4695
2 TraesCS5D01G213900 chr4D 98.846 260 2 1 2650 2908 59473244 59472985 2.250000e-126 462
3 TraesCS5D01G213900 chr3D 98.787 2639 30 2 1 2638 345712848 345715485 0.000000e+00 4695
4 TraesCS5D01G213900 chr7D 98.750 2639 31 2 1 2638 580918164 580915527 0.000000e+00 4689
5 TraesCS5D01G213900 chr7D 98.674 2639 33 2 1 2638 597980924 597978287 0.000000e+00 4678
6 TraesCS5D01G213900 chr7D 98.675 2641 30 4 1 2638 625484145 625481507 0.000000e+00 4678
7 TraesCS5D01G213900 chr7D 98.864 264 1 2 2650 2911 625481470 625481207 1.340000e-128 470
8 TraesCS5D01G213900 chr7D 98.855 262 2 1 2650 2910 118408583 118408844 1.740000e-127 466
9 TraesCS5D01G213900 chr7D 96.727 275 7 2 2650 2922 60027764 60027490 1.050000e-124 457
10 TraesCS5D01G213900 chr1D 98.750 2639 31 2 1 2638 487824631 487821994 0.000000e+00 4689
11 TraesCS5D01G213900 chr1D 98.859 263 2 1 2650 2911 487821957 487821695 4.840000e-128 468
12 TraesCS5D01G213900 chr1D 98.855 262 2 1 2650 2910 320772163 320772424 1.740000e-127 466
13 TraesCS5D01G213900 chr1D 97.778 270 3 3 2650 2918 468531822 468531555 2.250000e-126 462
14 TraesCS5D01G213900 chr2D 98.712 2639 32 2 1 2638 535920237 535917600 0.000000e+00 4684
15 TraesCS5D01G213900 chr2D 98.712 2639 30 4 1 2638 509446214 509448849 0.000000e+00 4682
16 TraesCS5D01G213900 chr2D 98.675 2641 31 3 1 2638 14953854 14951215 0.000000e+00 4680
17 TraesCS5D01G213900 chr2D 98.162 272 2 3 2650 2920 590732057 590731788 3.740000e-129 472
18 TraesCS5D01G213900 chr6D 98.859 263 2 1 2650 2911 28936671 28936933 4.840000e-128 468
19 TraesCS5D01G213900 chr6D 98.127 267 3 2 2650 2915 384863309 384863044 6.260000e-127 464


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G213900 chr5D 323574695 323577896 3201 True 5877.0 5877 100.0000 1 3202 1 chr5D.!!$R1 3201
1 TraesCS5D01G213900 chr4D 467994849 467997486 2637 False 4695.0 4695 98.7870 1 2638 1 chr4D.!!$F1 2637
2 TraesCS5D01G213900 chr3D 345712848 345715485 2637 False 4695.0 4695 98.7870 1 2638 1 chr3D.!!$F1 2637
3 TraesCS5D01G213900 chr7D 580915527 580918164 2637 True 4689.0 4689 98.7500 1 2638 1 chr7D.!!$R2 2637
4 TraesCS5D01G213900 chr7D 597978287 597980924 2637 True 4678.0 4678 98.6740 1 2638 1 chr7D.!!$R3 2637
5 TraesCS5D01G213900 chr7D 625481207 625484145 2938 True 2574.0 4678 98.7695 1 2911 2 chr7D.!!$R4 2910
6 TraesCS5D01G213900 chr1D 487821695 487824631 2936 True 2578.5 4689 98.8045 1 2911 2 chr1D.!!$R2 2910
7 TraesCS5D01G213900 chr2D 535917600 535920237 2637 True 4684.0 4684 98.7120 1 2638 1 chr2D.!!$R2 2637
8 TraesCS5D01G213900 chr2D 509446214 509448849 2635 False 4682.0 4682 98.7120 1 2638 1 chr2D.!!$F1 2637
9 TraesCS5D01G213900 chr2D 14951215 14953854 2639 True 4680.0 4680 98.6750 1 2638 1 chr2D.!!$R1 2637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 791 1.225376 TTTGTTCCCGTGTGCTAGCG 61.225 55.0 10.77 0.0 0.00 4.26 F
1251 1255 0.032912 ATCCCATGCCATGCAAGACA 60.033 50.0 0.00 0.0 43.62 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2206 4.080695 GGTAGGACCGAAATACCCTCTTTT 60.081 45.833 0.0 0.0 34.14 2.27 R
3111 3144 0.043485 TGCCACCCTACCTACCATGA 59.957 55.000 0.0 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 1.378762 CGTCCCTTTGGGTGTCCAT 59.621 57.895 2.25 0.00 44.74 3.41
206 207 6.255020 GGTGTATTAGTGATAATATTCGGCGG 59.745 42.308 7.21 0.00 0.00 6.13
490 491 1.272147 GGTGAGACCAGCCAAATCCTT 60.272 52.381 0.00 0.00 38.42 3.36
787 791 1.225376 TTTGTTCCCGTGTGCTAGCG 61.225 55.000 10.77 0.00 0.00 4.26
1157 1161 1.662876 GGTACGCAACGACGACAAGTA 60.663 52.381 0.00 0.00 36.70 2.24
1251 1255 0.032912 ATCCCATGCCATGCAAGACA 60.033 50.000 0.00 0.00 43.62 3.41
1995 1999 7.816995 GGCTTGATGTTTTGAATATACAACCAA 59.183 33.333 0.00 0.00 0.00 3.67
2106 2112 1.172175 CAAGGAGCTTCTTGGAAGCC 58.828 55.000 25.02 16.18 44.01 4.35
2137 2143 2.880890 GAGGCGCAATAATTGGAGACAT 59.119 45.455 10.83 0.00 42.32 3.06
2191 2197 8.989980 GTCAGGGTCTATATTGTTTTATGCTAC 58.010 37.037 0.00 0.00 0.00 3.58
2868 2901 2.301009 GTTCCTGAACCGGGACTAAAGA 59.699 50.000 6.32 0.00 38.83 2.52
2911 2944 2.558974 CCCCTTTTCCTACTAGTGGGT 58.441 52.381 23.26 0.00 32.47 4.51
2912 2945 3.727948 CCCCTTTTCCTACTAGTGGGTA 58.272 50.000 23.26 12.66 32.47 3.69
2913 2946 3.710165 CCCCTTTTCCTACTAGTGGGTAG 59.290 52.174 23.26 17.67 38.95 3.18
2914 2947 4.359996 CCCTTTTCCTACTAGTGGGTAGT 58.640 47.826 23.26 0.00 44.69 2.73
2915 2948 4.161754 CCCTTTTCCTACTAGTGGGTAGTG 59.838 50.000 23.26 12.81 42.37 2.74
2916 2949 4.382793 CCTTTTCCTACTAGTGGGTAGTGC 60.383 50.000 23.26 0.00 42.37 4.40
2917 2950 3.752359 TTCCTACTAGTGGGTAGTGCT 57.248 47.619 23.26 0.00 42.37 4.40
2918 2951 3.294038 TCCTACTAGTGGGTAGTGCTC 57.706 52.381 23.26 0.00 42.37 4.26
2919 2952 2.579400 TCCTACTAGTGGGTAGTGCTCA 59.421 50.000 23.26 0.12 42.37 4.26
2920 2953 2.952978 CCTACTAGTGGGTAGTGCTCAG 59.047 54.545 16.88 0.00 42.37 3.35
2921 2954 2.901338 ACTAGTGGGTAGTGCTCAGA 57.099 50.000 0.00 0.00 40.76 3.27
2922 2955 3.390175 ACTAGTGGGTAGTGCTCAGAT 57.610 47.619 0.00 0.00 40.76 2.90
2923 2956 3.027412 ACTAGTGGGTAGTGCTCAGATG 58.973 50.000 0.00 0.00 40.76 2.90
2924 2957 1.198713 AGTGGGTAGTGCTCAGATGG 58.801 55.000 0.00 0.00 0.00 3.51
2925 2958 0.905357 GTGGGTAGTGCTCAGATGGT 59.095 55.000 0.00 0.00 0.00 3.55
2926 2959 1.134670 GTGGGTAGTGCTCAGATGGTC 60.135 57.143 0.00 0.00 0.00 4.02
2927 2960 1.195115 GGGTAGTGCTCAGATGGTCA 58.805 55.000 0.00 0.00 0.00 4.02
2928 2961 1.555075 GGGTAGTGCTCAGATGGTCAA 59.445 52.381 0.00 0.00 0.00 3.18
2929 2962 2.027192 GGGTAGTGCTCAGATGGTCAAA 60.027 50.000 0.00 0.00 0.00 2.69
2930 2963 3.265791 GGTAGTGCTCAGATGGTCAAAG 58.734 50.000 0.00 0.00 0.00 2.77
2931 2964 2.486472 AGTGCTCAGATGGTCAAAGG 57.514 50.000 0.00 0.00 0.00 3.11
2932 2965 1.004044 AGTGCTCAGATGGTCAAAGGG 59.996 52.381 0.00 0.00 0.00 3.95
2933 2966 1.003580 GTGCTCAGATGGTCAAAGGGA 59.996 52.381 0.00 0.00 0.00 4.20
2934 2967 1.918262 TGCTCAGATGGTCAAAGGGAT 59.082 47.619 0.00 0.00 0.00 3.85
2935 2968 2.092753 TGCTCAGATGGTCAAAGGGATC 60.093 50.000 0.00 0.00 0.00 3.36
2936 2969 2.831333 CTCAGATGGTCAAAGGGATCG 58.169 52.381 0.00 0.00 0.00 3.69
2937 2970 1.134401 TCAGATGGTCAAAGGGATCGC 60.134 52.381 0.54 0.54 0.00 4.58
2938 2971 1.134280 CAGATGGTCAAAGGGATCGCT 60.134 52.381 6.44 6.44 0.00 4.93
2939 2972 1.134280 AGATGGTCAAAGGGATCGCTG 60.134 52.381 13.74 2.77 0.00 5.18
2940 2973 0.911769 ATGGTCAAAGGGATCGCTGA 59.088 50.000 13.74 5.33 0.00 4.26
2941 2974 0.250234 TGGTCAAAGGGATCGCTGAG 59.750 55.000 13.74 9.04 0.00 3.35
2942 2975 0.250513 GGTCAAAGGGATCGCTGAGT 59.749 55.000 13.74 0.00 0.00 3.41
2943 2976 1.646189 GTCAAAGGGATCGCTGAGTC 58.354 55.000 13.74 3.46 0.00 3.36
2944 2977 0.173481 TCAAAGGGATCGCTGAGTCG 59.827 55.000 13.74 0.91 0.00 4.18
2945 2978 0.807667 CAAAGGGATCGCTGAGTCGG 60.808 60.000 13.74 0.00 0.00 4.79
2946 2979 0.970937 AAAGGGATCGCTGAGTCGGA 60.971 55.000 13.74 0.00 0.00 4.55
2947 2980 1.388065 AAGGGATCGCTGAGTCGGAG 61.388 60.000 13.74 0.00 0.00 4.63
2948 2981 2.122167 GGGATCGCTGAGTCGGAGT 61.122 63.158 2.16 0.00 0.00 3.85
2949 2982 1.064946 GGATCGCTGAGTCGGAGTG 59.935 63.158 2.16 0.00 0.00 3.51
2950 2983 1.587613 GATCGCTGAGTCGGAGTGC 60.588 63.158 2.16 0.00 0.00 4.40
2951 2984 3.402691 ATCGCTGAGTCGGAGTGCG 62.403 63.158 2.16 10.33 46.71 5.34
2953 2986 2.258591 GCTGAGTCGGAGTGCGAA 59.741 61.111 8.80 0.00 0.00 4.70
2954 2987 1.803519 GCTGAGTCGGAGTGCGAAG 60.804 63.158 8.80 3.89 0.00 3.79
2955 2988 1.581954 CTGAGTCGGAGTGCGAAGT 59.418 57.895 8.80 0.00 0.00 3.01
2956 2989 0.455295 CTGAGTCGGAGTGCGAAGTC 60.455 60.000 8.80 9.45 0.00 3.01
2957 2990 1.512310 GAGTCGGAGTGCGAAGTCG 60.512 63.158 8.80 0.00 43.27 4.18
2969 3002 2.190325 CGAAGTCGCACTAACTAGGG 57.810 55.000 0.00 0.00 0.00 3.53
2970 3003 1.741706 CGAAGTCGCACTAACTAGGGA 59.258 52.381 0.00 0.00 0.00 4.20
2971 3004 2.163010 CGAAGTCGCACTAACTAGGGAA 59.837 50.000 0.00 0.00 0.00 3.97
2972 3005 3.366679 CGAAGTCGCACTAACTAGGGAAA 60.367 47.826 0.00 0.00 0.00 3.13
2973 3006 4.563061 GAAGTCGCACTAACTAGGGAAAA 58.437 43.478 0.00 0.00 0.00 2.29
2974 3007 4.189639 AGTCGCACTAACTAGGGAAAAG 57.810 45.455 0.00 0.00 0.00 2.27
2975 3008 2.671888 GTCGCACTAACTAGGGAAAAGC 59.328 50.000 0.00 0.00 0.00 3.51
2976 3009 2.007608 CGCACTAACTAGGGAAAAGCC 58.992 52.381 0.00 0.00 0.00 4.35
2977 3010 2.614481 CGCACTAACTAGGGAAAAGCCA 60.614 50.000 0.00 0.00 38.95 4.75
2978 3011 3.010420 GCACTAACTAGGGAAAAGCCAG 58.990 50.000 0.00 0.00 38.95 4.85
2979 3012 3.307480 GCACTAACTAGGGAAAAGCCAGA 60.307 47.826 0.00 0.00 38.95 3.86
2980 3013 4.626529 GCACTAACTAGGGAAAAGCCAGAT 60.627 45.833 0.00 0.00 38.95 2.90
2981 3014 5.396436 GCACTAACTAGGGAAAAGCCAGATA 60.396 44.000 0.00 0.00 38.95 1.98
2982 3015 6.284459 CACTAACTAGGGAAAAGCCAGATAG 58.716 44.000 0.00 0.00 38.95 2.08
2983 3016 5.965091 ACTAACTAGGGAAAAGCCAGATAGT 59.035 40.000 0.00 0.00 38.95 2.12
2984 3017 4.762289 ACTAGGGAAAAGCCAGATAGTG 57.238 45.455 0.00 0.00 38.95 2.74
2985 3018 4.104831 ACTAGGGAAAAGCCAGATAGTGT 58.895 43.478 0.00 0.00 38.95 3.55
2986 3019 4.536489 ACTAGGGAAAAGCCAGATAGTGTT 59.464 41.667 0.00 0.00 38.95 3.32
2987 3020 3.690460 AGGGAAAAGCCAGATAGTGTTG 58.310 45.455 0.00 0.00 38.95 3.33
2988 3021 2.755103 GGGAAAAGCCAGATAGTGTTGG 59.245 50.000 0.00 0.00 38.95 3.77
2989 3022 3.421844 GGAAAAGCCAGATAGTGTTGGT 58.578 45.455 0.00 0.00 36.81 3.67
2990 3023 3.826729 GGAAAAGCCAGATAGTGTTGGTT 59.173 43.478 0.00 0.00 36.81 3.67
2991 3024 5.007682 GGAAAAGCCAGATAGTGTTGGTTA 58.992 41.667 0.00 0.00 36.81 2.85
2992 3025 5.123979 GGAAAAGCCAGATAGTGTTGGTTAG 59.876 44.000 0.00 0.00 36.81 2.34
2993 3026 5.499004 AAAGCCAGATAGTGTTGGTTAGA 57.501 39.130 0.00 0.00 36.81 2.10
2994 3027 5.700402 AAGCCAGATAGTGTTGGTTAGAT 57.300 39.130 0.00 0.00 36.81 1.98
2995 3028 5.028549 AGCCAGATAGTGTTGGTTAGATG 57.971 43.478 0.00 0.00 36.81 2.90
2996 3029 4.471386 AGCCAGATAGTGTTGGTTAGATGT 59.529 41.667 0.00 0.00 36.81 3.06
2997 3030 4.811557 GCCAGATAGTGTTGGTTAGATGTC 59.188 45.833 0.00 0.00 36.81 3.06
2998 3031 5.360591 CCAGATAGTGTTGGTTAGATGTCC 58.639 45.833 0.00 0.00 0.00 4.02
2999 3032 5.043903 CAGATAGTGTTGGTTAGATGTCCG 58.956 45.833 0.00 0.00 0.00 4.79
3000 3033 2.762535 AGTGTTGGTTAGATGTCCGG 57.237 50.000 0.00 0.00 0.00 5.14
3001 3034 1.278127 AGTGTTGGTTAGATGTCCGGG 59.722 52.381 0.00 0.00 0.00 5.73
3002 3035 1.276989 GTGTTGGTTAGATGTCCGGGA 59.723 52.381 0.00 0.00 0.00 5.14
3003 3036 1.553248 TGTTGGTTAGATGTCCGGGAG 59.447 52.381 0.00 0.00 0.00 4.30
3004 3037 0.539986 TTGGTTAGATGTCCGGGAGC 59.460 55.000 0.00 0.00 0.00 4.70
3005 3038 0.616395 TGGTTAGATGTCCGGGAGCA 60.616 55.000 0.00 0.00 0.00 4.26
3006 3039 0.179081 GGTTAGATGTCCGGGAGCAC 60.179 60.000 0.00 0.00 0.00 4.40
3007 3040 0.535335 GTTAGATGTCCGGGAGCACA 59.465 55.000 0.00 0.00 0.00 4.57
3008 3041 1.066430 GTTAGATGTCCGGGAGCACAA 60.066 52.381 0.00 0.00 0.00 3.33
3009 3042 0.824109 TAGATGTCCGGGAGCACAAG 59.176 55.000 0.00 0.00 0.00 3.16
3010 3043 2.045926 ATGTCCGGGAGCACAAGC 60.046 61.111 0.00 0.00 42.56 4.01
3011 3044 3.628646 ATGTCCGGGAGCACAAGCC 62.629 63.158 0.00 0.00 43.56 4.35
3016 3049 4.021925 GGGAGCACAAGCCGGACT 62.022 66.667 5.05 0.00 43.56 3.85
3017 3050 2.032681 GGAGCACAAGCCGGACTT 59.967 61.111 5.05 5.30 43.56 3.01
3018 3051 1.600916 GGAGCACAAGCCGGACTTT 60.601 57.895 5.05 0.00 43.56 2.66
3019 3052 1.578206 GGAGCACAAGCCGGACTTTC 61.578 60.000 5.05 2.67 43.56 2.62
3020 3053 0.603975 GAGCACAAGCCGGACTTTCT 60.604 55.000 5.05 5.20 43.56 2.52
3021 3054 0.603975 AGCACAAGCCGGACTTTCTC 60.604 55.000 5.05 0.00 43.56 2.87
3022 3055 1.901650 GCACAAGCCGGACTTTCTCG 61.902 60.000 5.05 0.00 36.04 4.04
3023 3056 1.668151 ACAAGCCGGACTTTCTCGC 60.668 57.895 5.05 0.00 36.04 5.03
3024 3057 2.047179 AAGCCGGACTTTCTCGCC 60.047 61.111 5.05 0.00 33.71 5.54
3025 3058 2.584391 AAGCCGGACTTTCTCGCCT 61.584 57.895 5.05 0.00 33.71 5.52
3026 3059 2.047179 GCCGGACTTTCTCGCCTT 60.047 61.111 5.05 0.00 0.00 4.35
3027 3060 2.391389 GCCGGACTTTCTCGCCTTG 61.391 63.158 5.05 0.00 0.00 3.61
3028 3061 1.292223 CCGGACTTTCTCGCCTTGA 59.708 57.895 0.00 0.00 0.00 3.02
3029 3062 0.108138 CCGGACTTTCTCGCCTTGAT 60.108 55.000 0.00 0.00 0.00 2.57
3030 3063 1.002366 CGGACTTTCTCGCCTTGATG 58.998 55.000 0.00 0.00 0.00 3.07
3031 3064 1.373570 GGACTTTCTCGCCTTGATGG 58.626 55.000 0.00 0.00 39.35 3.51
3032 3065 1.066143 GGACTTTCTCGCCTTGATGGA 60.066 52.381 0.00 0.00 38.35 3.41
3033 3066 2.275318 GACTTTCTCGCCTTGATGGAG 58.725 52.381 0.00 0.00 38.35 3.86
3034 3067 1.902508 ACTTTCTCGCCTTGATGGAGA 59.097 47.619 0.00 0.00 42.42 3.71
3035 3068 2.503356 ACTTTCTCGCCTTGATGGAGAT 59.497 45.455 0.00 0.00 43.61 2.75
3036 3069 2.609427 TTCTCGCCTTGATGGAGATG 57.391 50.000 0.00 0.00 43.61 2.90
3037 3070 0.755079 TCTCGCCTTGATGGAGATGG 59.245 55.000 0.00 0.00 43.61 3.51
3038 3071 0.250209 CTCGCCTTGATGGAGATGGG 60.250 60.000 0.00 0.00 43.61 4.00
3039 3072 0.690744 TCGCCTTGATGGAGATGGGA 60.691 55.000 0.00 0.00 39.76 4.37
3040 3073 0.181114 CGCCTTGATGGAGATGGGAA 59.819 55.000 0.00 0.00 37.90 3.97
3041 3074 1.813092 CGCCTTGATGGAGATGGGAAG 60.813 57.143 0.00 0.00 37.90 3.46
3042 3075 1.492176 GCCTTGATGGAGATGGGAAGA 59.508 52.381 0.00 0.00 38.35 2.87
3043 3076 2.107901 GCCTTGATGGAGATGGGAAGAT 59.892 50.000 0.00 0.00 38.35 2.40
3044 3077 3.810033 GCCTTGATGGAGATGGGAAGATC 60.810 52.174 0.00 0.00 38.35 2.75
3045 3078 3.393609 CCTTGATGGAGATGGGAAGATCA 59.606 47.826 0.00 0.00 38.35 2.92
3046 3079 4.141321 CCTTGATGGAGATGGGAAGATCAA 60.141 45.833 0.00 0.00 38.35 2.57
3047 3080 5.443283 CTTGATGGAGATGGGAAGATCAAA 58.557 41.667 0.00 0.00 31.33 2.69
3048 3081 5.658198 TGATGGAGATGGGAAGATCAAAT 57.342 39.130 0.00 0.00 0.00 2.32
3049 3082 6.022107 TGATGGAGATGGGAAGATCAAATT 57.978 37.500 0.00 0.00 0.00 1.82
3050 3083 6.437755 TGATGGAGATGGGAAGATCAAATTT 58.562 36.000 0.00 0.00 0.00 1.82
3051 3084 6.899075 TGATGGAGATGGGAAGATCAAATTTT 59.101 34.615 0.00 0.00 0.00 1.82
3052 3085 6.534475 TGGAGATGGGAAGATCAAATTTTG 57.466 37.500 2.59 2.59 0.00 2.44
3053 3086 5.105228 TGGAGATGGGAAGATCAAATTTTGC 60.105 40.000 4.19 0.00 0.00 3.68
3054 3087 5.128335 GGAGATGGGAAGATCAAATTTTGCT 59.872 40.000 4.19 0.00 0.00 3.91
3055 3088 5.974108 AGATGGGAAGATCAAATTTTGCTG 58.026 37.500 4.19 0.00 0.00 4.41
3056 3089 3.929094 TGGGAAGATCAAATTTTGCTGC 58.071 40.909 4.19 0.00 0.00 5.25
3057 3090 3.324268 TGGGAAGATCAAATTTTGCTGCA 59.676 39.130 0.00 0.00 0.00 4.41
3058 3091 3.681417 GGGAAGATCAAATTTTGCTGCAC 59.319 43.478 0.00 0.00 0.00 4.57
3059 3092 3.681417 GGAAGATCAAATTTTGCTGCACC 59.319 43.478 0.00 0.00 0.00 5.01
3060 3093 4.562143 GGAAGATCAAATTTTGCTGCACCT 60.562 41.667 0.00 0.00 0.00 4.00
3061 3094 4.612264 AGATCAAATTTTGCTGCACCTT 57.388 36.364 0.00 0.00 0.00 3.50
3062 3095 4.964593 AGATCAAATTTTGCTGCACCTTT 58.035 34.783 0.00 0.00 0.00 3.11
3063 3096 5.370679 AGATCAAATTTTGCTGCACCTTTT 58.629 33.333 0.00 0.00 0.00 2.27
3064 3097 5.824097 AGATCAAATTTTGCTGCACCTTTTT 59.176 32.000 0.00 0.00 0.00 1.94
3065 3098 5.232610 TCAAATTTTGCTGCACCTTTTTG 57.767 34.783 0.00 10.45 0.00 2.44
3066 3099 4.940046 TCAAATTTTGCTGCACCTTTTTGA 59.060 33.333 17.80 17.80 31.50 2.69
3067 3100 5.064962 TCAAATTTTGCTGCACCTTTTTGAG 59.935 36.000 17.80 3.93 30.72 3.02
3068 3101 3.883830 TTTTGCTGCACCTTTTTGAGA 57.116 38.095 0.00 0.00 0.00 3.27
3069 3102 3.883830 TTTGCTGCACCTTTTTGAGAA 57.116 38.095 0.00 0.00 0.00 2.87
3070 3103 3.883830 TTGCTGCACCTTTTTGAGAAA 57.116 38.095 0.00 0.00 0.00 2.52
3071 3104 3.163630 TGCTGCACCTTTTTGAGAAAC 57.836 42.857 0.00 0.00 0.00 2.78
3072 3105 2.159114 TGCTGCACCTTTTTGAGAAACC 60.159 45.455 0.00 0.00 0.00 3.27
3073 3106 2.101415 GCTGCACCTTTTTGAGAAACCT 59.899 45.455 0.00 0.00 0.00 3.50
3074 3107 3.430790 GCTGCACCTTTTTGAGAAACCTT 60.431 43.478 0.00 0.00 0.00 3.50
3075 3108 4.202111 GCTGCACCTTTTTGAGAAACCTTA 60.202 41.667 0.00 0.00 0.00 2.69
3076 3109 5.514274 TGCACCTTTTTGAGAAACCTTAG 57.486 39.130 0.00 0.00 0.00 2.18
3077 3110 4.953579 TGCACCTTTTTGAGAAACCTTAGT 59.046 37.500 0.00 0.00 0.00 2.24
3078 3111 5.163561 TGCACCTTTTTGAGAAACCTTAGTG 60.164 40.000 0.00 0.00 0.00 2.74
3079 3112 5.736207 GCACCTTTTTGAGAAACCTTAGTGG 60.736 44.000 0.00 0.00 42.93 4.00
3080 3113 4.893524 ACCTTTTTGAGAAACCTTAGTGGG 59.106 41.667 0.00 0.00 41.11 4.61
3081 3114 4.280929 CCTTTTTGAGAAACCTTAGTGGGG 59.719 45.833 0.00 0.00 41.11 4.96
3082 3115 3.518992 TTTGAGAAACCTTAGTGGGGG 57.481 47.619 0.00 0.00 41.11 5.40
3083 3116 0.696501 TGAGAAACCTTAGTGGGGGC 59.303 55.000 0.00 0.00 41.11 5.80
3084 3117 0.992695 GAGAAACCTTAGTGGGGGCT 59.007 55.000 0.00 0.00 41.11 5.19
3085 3118 0.698818 AGAAACCTTAGTGGGGGCTG 59.301 55.000 0.00 0.00 41.11 4.85
3086 3119 0.323451 GAAACCTTAGTGGGGGCTGG 60.323 60.000 0.00 0.00 41.11 4.85
3087 3120 0.774491 AAACCTTAGTGGGGGCTGGA 60.774 55.000 0.00 0.00 41.11 3.86
3088 3121 0.552615 AACCTTAGTGGGGGCTGGAT 60.553 55.000 0.00 0.00 41.11 3.41
3089 3122 0.552615 ACCTTAGTGGGGGCTGGATT 60.553 55.000 0.00 0.00 41.11 3.01
3090 3123 0.106519 CCTTAGTGGGGGCTGGATTG 60.107 60.000 0.00 0.00 0.00 2.67
3091 3124 0.625849 CTTAGTGGGGGCTGGATTGT 59.374 55.000 0.00 0.00 0.00 2.71
3092 3125 0.331278 TTAGTGGGGGCTGGATTGTG 59.669 55.000 0.00 0.00 0.00 3.33
3093 3126 2.210144 TAGTGGGGGCTGGATTGTGC 62.210 60.000 0.00 0.00 0.00 4.57
3094 3127 3.267233 TGGGGGCTGGATTGTGCT 61.267 61.111 0.00 0.00 0.00 4.40
3095 3128 2.037847 GGGGGCTGGATTGTGCTT 59.962 61.111 0.00 0.00 0.00 3.91
3096 3129 2.353610 GGGGGCTGGATTGTGCTTG 61.354 63.158 0.00 0.00 0.00 4.01
3097 3130 2.575461 GGGCTGGATTGTGCTTGC 59.425 61.111 0.00 0.00 0.00 4.01
3098 3131 2.277591 GGGCTGGATTGTGCTTGCA 61.278 57.895 0.00 0.00 0.00 4.08
3099 3132 1.610554 GGGCTGGATTGTGCTTGCAT 61.611 55.000 0.00 0.00 0.00 3.96
3100 3133 0.248289 GGCTGGATTGTGCTTGCATT 59.752 50.000 0.00 0.00 0.00 3.56
3101 3134 1.355971 GCTGGATTGTGCTTGCATTG 58.644 50.000 0.00 0.00 0.00 2.82
3102 3135 1.337447 GCTGGATTGTGCTTGCATTGT 60.337 47.619 0.00 0.00 0.00 2.71
3103 3136 2.602878 CTGGATTGTGCTTGCATTGTC 58.397 47.619 0.00 0.00 0.00 3.18
3104 3137 2.230508 CTGGATTGTGCTTGCATTGTCT 59.769 45.455 0.00 0.00 0.00 3.41
3105 3138 3.419943 TGGATTGTGCTTGCATTGTCTA 58.580 40.909 0.00 0.00 0.00 2.59
3106 3139 3.191162 TGGATTGTGCTTGCATTGTCTAC 59.809 43.478 0.00 0.00 0.00 2.59
3107 3140 3.428045 GGATTGTGCTTGCATTGTCTACC 60.428 47.826 0.00 0.00 0.00 3.18
3108 3141 2.566833 TGTGCTTGCATTGTCTACCT 57.433 45.000 0.00 0.00 0.00 3.08
3109 3142 2.862541 TGTGCTTGCATTGTCTACCTT 58.137 42.857 0.00 0.00 0.00 3.50
3110 3143 2.813754 TGTGCTTGCATTGTCTACCTTC 59.186 45.455 0.00 0.00 0.00 3.46
3111 3144 3.077359 GTGCTTGCATTGTCTACCTTCT 58.923 45.455 0.00 0.00 0.00 2.85
3112 3145 3.126000 GTGCTTGCATTGTCTACCTTCTC 59.874 47.826 0.00 0.00 0.00 2.87
3113 3146 3.244526 TGCTTGCATTGTCTACCTTCTCA 60.245 43.478 0.00 0.00 0.00 3.27
3114 3147 3.944015 GCTTGCATTGTCTACCTTCTCAT 59.056 43.478 0.00 0.00 0.00 2.90
3115 3148 4.201891 GCTTGCATTGTCTACCTTCTCATG 60.202 45.833 0.00 0.00 0.00 3.07
3116 3149 3.877559 TGCATTGTCTACCTTCTCATGG 58.122 45.455 0.00 0.00 0.00 3.66
3117 3150 3.264193 TGCATTGTCTACCTTCTCATGGT 59.736 43.478 0.00 0.00 41.28 3.55
3118 3151 4.469586 TGCATTGTCTACCTTCTCATGGTA 59.530 41.667 0.00 0.00 38.88 3.25
3125 3158 3.047695 ACCTTCTCATGGTAGGTAGGG 57.952 52.381 11.17 0.00 40.42 3.53
3126 3159 2.318207 ACCTTCTCATGGTAGGTAGGGT 59.682 50.000 11.17 0.00 40.42 4.34
3127 3160 2.700897 CCTTCTCATGGTAGGTAGGGTG 59.299 54.545 0.00 0.00 0.00 4.61
3128 3161 2.471815 TCTCATGGTAGGTAGGGTGG 57.528 55.000 0.00 0.00 0.00 4.61
3129 3162 0.759346 CTCATGGTAGGTAGGGTGGC 59.241 60.000 0.00 0.00 0.00 5.01
3130 3163 0.043485 TCATGGTAGGTAGGGTGGCA 59.957 55.000 0.00 0.00 0.00 4.92
3131 3164 1.140312 CATGGTAGGTAGGGTGGCAT 58.860 55.000 0.00 0.00 0.00 4.40
3132 3165 1.494721 CATGGTAGGTAGGGTGGCATT 59.505 52.381 0.00 0.00 0.00 3.56
3133 3166 1.676248 TGGTAGGTAGGGTGGCATTT 58.324 50.000 0.00 0.00 0.00 2.32
3134 3167 1.997040 TGGTAGGTAGGGTGGCATTTT 59.003 47.619 0.00 0.00 0.00 1.82
3135 3168 2.291282 TGGTAGGTAGGGTGGCATTTTG 60.291 50.000 0.00 0.00 0.00 2.44
3136 3169 2.291346 GGTAGGTAGGGTGGCATTTTGT 60.291 50.000 0.00 0.00 0.00 2.83
3137 3170 2.694616 AGGTAGGGTGGCATTTTGTT 57.305 45.000 0.00 0.00 0.00 2.83
3138 3171 3.818295 AGGTAGGGTGGCATTTTGTTA 57.182 42.857 0.00 0.00 0.00 2.41
3139 3172 3.697166 AGGTAGGGTGGCATTTTGTTAG 58.303 45.455 0.00 0.00 0.00 2.34
3140 3173 2.758423 GGTAGGGTGGCATTTTGTTAGG 59.242 50.000 0.00 0.00 0.00 2.69
3141 3174 1.937191 AGGGTGGCATTTTGTTAGGG 58.063 50.000 0.00 0.00 0.00 3.53
3142 3175 1.431243 AGGGTGGCATTTTGTTAGGGA 59.569 47.619 0.00 0.00 0.00 4.20
3143 3176 2.044353 AGGGTGGCATTTTGTTAGGGAT 59.956 45.455 0.00 0.00 0.00 3.85
3144 3177 3.270960 AGGGTGGCATTTTGTTAGGGATA 59.729 43.478 0.00 0.00 0.00 2.59
3145 3178 4.027437 GGGTGGCATTTTGTTAGGGATAA 58.973 43.478 0.00 0.00 0.00 1.75
3146 3179 4.468153 GGGTGGCATTTTGTTAGGGATAAA 59.532 41.667 0.00 0.00 0.00 1.40
3147 3180 5.046231 GGGTGGCATTTTGTTAGGGATAAAA 60.046 40.000 0.00 0.00 33.66 1.52
3148 3181 6.352651 GGGTGGCATTTTGTTAGGGATAAAAT 60.353 38.462 0.00 0.00 38.94 1.82
3154 3187 8.702163 CATTTTGTTAGGGATAAAATGGACAC 57.298 34.615 11.71 0.00 45.52 3.67
3155 3188 7.841282 TTTTGTTAGGGATAAAATGGACACA 57.159 32.000 0.00 0.00 0.00 3.72
3156 3189 8.429237 TTTTGTTAGGGATAAAATGGACACAT 57.571 30.769 0.00 0.00 39.54 3.21
3158 3191 7.403312 TGTTAGGGATAAAATGGACACATTG 57.597 36.000 0.00 0.00 46.25 2.82
3159 3192 7.178573 TGTTAGGGATAAAATGGACACATTGA 58.821 34.615 0.00 0.00 46.25 2.57
3160 3193 7.122055 TGTTAGGGATAAAATGGACACATTGAC 59.878 37.037 0.00 0.00 46.25 3.18
3161 3194 5.579047 AGGGATAAAATGGACACATTGACA 58.421 37.500 0.00 0.00 46.25 3.58
3162 3195 5.418840 AGGGATAAAATGGACACATTGACAC 59.581 40.000 0.00 0.00 46.25 3.67
3163 3196 5.184864 GGGATAAAATGGACACATTGACACA 59.815 40.000 0.00 0.00 46.25 3.72
3164 3197 6.127366 GGGATAAAATGGACACATTGACACAT 60.127 38.462 0.00 0.00 46.25 3.21
3165 3198 6.753279 GGATAAAATGGACACATTGACACATG 59.247 38.462 0.00 0.00 46.25 3.21
3166 3199 4.524316 AAATGGACACATTGACACATGG 57.476 40.909 0.00 0.00 46.25 3.66
3167 3200 2.947127 TGGACACATTGACACATGGA 57.053 45.000 0.00 0.00 0.00 3.41
3168 3201 3.438216 TGGACACATTGACACATGGAT 57.562 42.857 0.00 0.00 0.00 3.41
3169 3202 3.083293 TGGACACATTGACACATGGATG 58.917 45.455 0.00 0.00 0.00 3.51
3170 3203 3.244840 TGGACACATTGACACATGGATGA 60.245 43.478 0.00 0.00 0.00 2.92
3171 3204 3.949754 GGACACATTGACACATGGATGAT 59.050 43.478 0.00 0.00 0.00 2.45
3172 3205 4.201980 GGACACATTGACACATGGATGATG 60.202 45.833 0.00 0.00 38.15 3.07
3173 3206 4.338012 ACACATTGACACATGGATGATGT 58.662 39.130 0.00 0.00 46.98 3.06
3174 3207 4.397103 ACACATTGACACATGGATGATGTC 59.603 41.667 6.48 6.48 43.96 3.06
3175 3208 4.638865 CACATTGACACATGGATGATGTCT 59.361 41.667 12.87 0.00 43.96 3.41
3176 3209 4.638865 ACATTGACACATGGATGATGTCTG 59.361 41.667 12.87 7.62 43.96 3.51
3177 3210 3.986996 TGACACATGGATGATGTCTGT 57.013 42.857 12.87 0.00 43.96 3.41
3178 3211 3.865446 TGACACATGGATGATGTCTGTC 58.135 45.455 12.87 7.43 43.96 3.51
3179 3212 3.261390 TGACACATGGATGATGTCTGTCA 59.739 43.478 12.87 9.57 43.96 3.58
3180 3213 3.603532 ACACATGGATGATGTCTGTCAC 58.396 45.455 0.00 0.00 43.96 3.67
3181 3214 2.941064 CACATGGATGATGTCTGTCACC 59.059 50.000 0.00 0.00 43.96 4.02
3182 3215 2.573009 ACATGGATGATGTCTGTCACCA 59.427 45.455 0.00 0.00 41.91 4.17
3183 3216 3.009363 ACATGGATGATGTCTGTCACCAA 59.991 43.478 0.00 0.00 41.91 3.67
3184 3217 3.339253 TGGATGATGTCTGTCACCAAG 57.661 47.619 0.00 0.00 31.18 3.61
3185 3218 2.026915 TGGATGATGTCTGTCACCAAGG 60.027 50.000 0.00 0.00 31.18 3.61
3186 3219 2.026822 GGATGATGTCTGTCACCAAGGT 60.027 50.000 0.00 0.00 0.00 3.50
3187 3220 2.549064 TGATGTCTGTCACCAAGGTG 57.451 50.000 13.03 13.03 46.64 4.00
3188 3221 1.072173 TGATGTCTGTCACCAAGGTGG 59.928 52.381 18.51 2.41 45.43 4.61
3189 3222 1.347707 GATGTCTGTCACCAAGGTGGA 59.652 52.381 18.51 6.04 45.43 4.02
3190 3223 1.434188 TGTCTGTCACCAAGGTGGAT 58.566 50.000 18.51 0.00 45.43 3.41
3191 3224 1.072173 TGTCTGTCACCAAGGTGGATG 59.928 52.381 18.51 9.10 45.43 3.51
3192 3225 0.692476 TCTGTCACCAAGGTGGATGG 59.308 55.000 18.51 7.52 45.43 3.51
3200 3233 3.721087 CCAAGGTGGATGGTTCTAAGT 57.279 47.619 0.00 0.00 40.96 2.24
3201 3234 3.347216 CCAAGGTGGATGGTTCTAAGTG 58.653 50.000 0.00 0.00 40.96 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 0.961857 TAGAACAGTAGCGCCCGACA 60.962 55.000 2.29 0.00 0.00 4.35
206 207 0.102481 ATCTCCATGCGTCCGTACAC 59.898 55.000 0.00 0.00 0.00 2.90
293 294 7.523293 TTTCCACTTTGAGCATTCAATAAGA 57.477 32.000 0.00 0.00 42.60 2.10
460 461 0.322187 TGGTCTCACCTCGATGTCGA 60.322 55.000 4.91 4.91 46.44 4.20
510 511 6.295719 ACTTACAGTCAACCCGAAATATCT 57.704 37.500 0.00 0.00 0.00 1.98
1177 1181 5.051240 ACACGTTGAAATAGTTGAAGTCGTC 60.051 40.000 0.00 0.00 0.00 4.20
1995 1999 4.707448 ACAGTTGAGATTCGTAGGATGACT 59.293 41.667 0.00 0.00 0.00 3.41
2191 2197 7.609146 ACCGAAATACCCTCTTTTAAGGTAAAG 59.391 37.037 0.00 0.00 39.50 1.85
2200 2206 4.080695 GGTAGGACCGAAATACCCTCTTTT 60.081 45.833 0.00 0.00 34.14 2.27
2911 2944 2.237143 CCCTTTGACCATCTGAGCACTA 59.763 50.000 0.00 0.00 0.00 2.74
2912 2945 1.004044 CCCTTTGACCATCTGAGCACT 59.996 52.381 0.00 0.00 0.00 4.40
2913 2946 1.003580 TCCCTTTGACCATCTGAGCAC 59.996 52.381 0.00 0.00 0.00 4.40
2914 2947 1.361204 TCCCTTTGACCATCTGAGCA 58.639 50.000 0.00 0.00 0.00 4.26
2915 2948 2.570135 GATCCCTTTGACCATCTGAGC 58.430 52.381 0.00 0.00 0.00 4.26
2916 2949 2.831333 CGATCCCTTTGACCATCTGAG 58.169 52.381 0.00 0.00 0.00 3.35
2917 2950 1.134401 GCGATCCCTTTGACCATCTGA 60.134 52.381 0.00 0.00 0.00 3.27
2918 2951 1.134280 AGCGATCCCTTTGACCATCTG 60.134 52.381 0.00 0.00 0.00 2.90
2919 2952 1.134280 CAGCGATCCCTTTGACCATCT 60.134 52.381 0.00 0.00 0.00 2.90
2920 2953 1.134401 TCAGCGATCCCTTTGACCATC 60.134 52.381 0.00 0.00 0.00 3.51
2921 2954 0.911769 TCAGCGATCCCTTTGACCAT 59.088 50.000 0.00 0.00 0.00 3.55
2922 2955 0.250234 CTCAGCGATCCCTTTGACCA 59.750 55.000 0.00 0.00 0.00 4.02
2923 2956 0.250513 ACTCAGCGATCCCTTTGACC 59.749 55.000 0.00 0.00 0.00 4.02
2924 2957 1.646189 GACTCAGCGATCCCTTTGAC 58.354 55.000 0.00 0.00 0.00 3.18
2925 2958 0.173481 CGACTCAGCGATCCCTTTGA 59.827 55.000 0.00 0.00 0.00 2.69
2926 2959 0.807667 CCGACTCAGCGATCCCTTTG 60.808 60.000 0.00 0.00 0.00 2.77
2927 2960 0.970937 TCCGACTCAGCGATCCCTTT 60.971 55.000 0.00 0.00 0.00 3.11
2928 2961 1.379977 TCCGACTCAGCGATCCCTT 60.380 57.895 0.00 0.00 0.00 3.95
2929 2962 1.826054 CTCCGACTCAGCGATCCCT 60.826 63.158 0.00 0.00 0.00 4.20
2930 2963 2.122167 ACTCCGACTCAGCGATCCC 61.122 63.158 0.00 0.00 0.00 3.85
2931 2964 1.064946 CACTCCGACTCAGCGATCC 59.935 63.158 0.00 0.00 0.00 3.36
2932 2965 1.587613 GCACTCCGACTCAGCGATC 60.588 63.158 0.00 0.00 0.00 3.69
2933 2966 2.492090 GCACTCCGACTCAGCGAT 59.508 61.111 0.00 0.00 0.00 4.58
2950 2983 1.741706 TCCCTAGTTAGTGCGACTTCG 59.258 52.381 0.00 0.00 43.27 3.79
2951 2984 3.863142 TTCCCTAGTTAGTGCGACTTC 57.137 47.619 0.00 0.00 0.00 3.01
2952 2985 4.566987 CTTTTCCCTAGTTAGTGCGACTT 58.433 43.478 0.00 0.00 0.00 3.01
2953 2986 3.616802 GCTTTTCCCTAGTTAGTGCGACT 60.617 47.826 0.00 0.00 0.00 4.18
2954 2987 2.671888 GCTTTTCCCTAGTTAGTGCGAC 59.328 50.000 0.00 0.00 0.00 5.19
2955 2988 2.354403 GGCTTTTCCCTAGTTAGTGCGA 60.354 50.000 0.00 0.00 0.00 5.10
2956 2989 2.007608 GGCTTTTCCCTAGTTAGTGCG 58.992 52.381 0.00 0.00 0.00 5.34
2957 2990 3.010420 CTGGCTTTTCCCTAGTTAGTGC 58.990 50.000 0.00 0.00 0.00 4.40
2958 2991 4.553330 TCTGGCTTTTCCCTAGTTAGTG 57.447 45.455 0.00 0.00 0.00 2.74
2959 2992 5.965091 ACTATCTGGCTTTTCCCTAGTTAGT 59.035 40.000 0.00 0.00 0.00 2.24
2960 2993 6.127026 ACACTATCTGGCTTTTCCCTAGTTAG 60.127 42.308 0.00 0.00 0.00 2.34
2961 2994 5.724854 ACACTATCTGGCTTTTCCCTAGTTA 59.275 40.000 0.00 0.00 0.00 2.24
2962 2995 4.536489 ACACTATCTGGCTTTTCCCTAGTT 59.464 41.667 0.00 0.00 0.00 2.24
2963 2996 4.104831 ACACTATCTGGCTTTTCCCTAGT 58.895 43.478 0.00 0.00 0.00 2.57
2964 2997 4.762289 ACACTATCTGGCTTTTCCCTAG 57.238 45.455 0.00 0.00 0.00 3.02
2965 2998 4.324254 CCAACACTATCTGGCTTTTCCCTA 60.324 45.833 0.00 0.00 0.00 3.53
2966 2999 3.562176 CCAACACTATCTGGCTTTTCCCT 60.562 47.826 0.00 0.00 0.00 4.20
2967 3000 2.755103 CCAACACTATCTGGCTTTTCCC 59.245 50.000 0.00 0.00 0.00 3.97
2968 3001 3.421844 ACCAACACTATCTGGCTTTTCC 58.578 45.455 0.00 0.00 36.03 3.13
2969 3002 5.938125 TCTAACCAACACTATCTGGCTTTTC 59.062 40.000 0.00 0.00 36.03 2.29
2970 3003 5.876357 TCTAACCAACACTATCTGGCTTTT 58.124 37.500 0.00 0.00 36.03 2.27
2971 3004 5.499004 TCTAACCAACACTATCTGGCTTT 57.501 39.130 0.00 0.00 36.03 3.51
2972 3005 5.045578 ACATCTAACCAACACTATCTGGCTT 60.046 40.000 0.00 0.00 36.03 4.35
2973 3006 4.471386 ACATCTAACCAACACTATCTGGCT 59.529 41.667 0.00 0.00 36.03 4.75
2974 3007 4.770795 ACATCTAACCAACACTATCTGGC 58.229 43.478 0.00 0.00 36.03 4.85
2975 3008 5.360591 GGACATCTAACCAACACTATCTGG 58.639 45.833 0.00 0.00 38.77 3.86
2976 3009 5.043903 CGGACATCTAACCAACACTATCTG 58.956 45.833 0.00 0.00 0.00 2.90
2977 3010 4.099573 CCGGACATCTAACCAACACTATCT 59.900 45.833 0.00 0.00 0.00 1.98
2978 3011 4.369182 CCGGACATCTAACCAACACTATC 58.631 47.826 0.00 0.00 0.00 2.08
2979 3012 3.134081 CCCGGACATCTAACCAACACTAT 59.866 47.826 0.73 0.00 0.00 2.12
2980 3013 2.498481 CCCGGACATCTAACCAACACTA 59.502 50.000 0.73 0.00 0.00 2.74
2981 3014 1.278127 CCCGGACATCTAACCAACACT 59.722 52.381 0.73 0.00 0.00 3.55
2982 3015 1.276989 TCCCGGACATCTAACCAACAC 59.723 52.381 0.73 0.00 0.00 3.32
2983 3016 1.553248 CTCCCGGACATCTAACCAACA 59.447 52.381 0.73 0.00 0.00 3.33
2984 3017 1.742750 GCTCCCGGACATCTAACCAAC 60.743 57.143 0.73 0.00 0.00 3.77
2985 3018 0.539986 GCTCCCGGACATCTAACCAA 59.460 55.000 0.73 0.00 0.00 3.67
2986 3019 0.616395 TGCTCCCGGACATCTAACCA 60.616 55.000 0.73 0.00 0.00 3.67
2987 3020 0.179081 GTGCTCCCGGACATCTAACC 60.179 60.000 0.73 0.00 0.00 2.85
2988 3021 0.535335 TGTGCTCCCGGACATCTAAC 59.465 55.000 0.73 0.00 36.50 2.34
2989 3022 1.207089 CTTGTGCTCCCGGACATCTAA 59.793 52.381 0.73 0.00 41.30 2.10
2990 3023 0.824109 CTTGTGCTCCCGGACATCTA 59.176 55.000 0.73 0.00 41.30 1.98
2991 3024 1.599047 CTTGTGCTCCCGGACATCT 59.401 57.895 0.73 0.00 41.30 2.90
2992 3025 2.109126 GCTTGTGCTCCCGGACATC 61.109 63.158 0.73 0.00 41.30 3.06
2993 3026 2.045926 GCTTGTGCTCCCGGACAT 60.046 61.111 0.73 0.00 41.30 3.06
2994 3027 4.329545 GGCTTGTGCTCCCGGACA 62.330 66.667 0.73 0.00 39.89 4.02
2999 3032 3.553095 AAGTCCGGCTTGTGCTCCC 62.553 63.158 9.88 0.00 39.59 4.30
3000 3033 1.578206 GAAAGTCCGGCTTGTGCTCC 61.578 60.000 11.17 0.00 37.52 4.70
3001 3034 0.603975 AGAAAGTCCGGCTTGTGCTC 60.604 55.000 11.17 6.07 37.52 4.26
3002 3035 0.603975 GAGAAAGTCCGGCTTGTGCT 60.604 55.000 11.17 9.28 37.52 4.40
3003 3036 1.869690 GAGAAAGTCCGGCTTGTGC 59.130 57.895 11.17 5.48 37.52 4.57
3004 3037 1.901650 GCGAGAAAGTCCGGCTTGTG 61.902 60.000 11.17 4.39 37.52 3.33
3005 3038 1.668151 GCGAGAAAGTCCGGCTTGT 60.668 57.895 11.17 3.40 37.52 3.16
3006 3039 2.391389 GGCGAGAAAGTCCGGCTTG 61.391 63.158 11.17 0.90 45.94 4.01
3007 3040 2.047179 GGCGAGAAAGTCCGGCTT 60.047 61.111 0.00 0.00 45.94 4.35
3010 3043 0.108138 ATCAAGGCGAGAAAGTCCGG 60.108 55.000 0.00 0.00 0.00 5.14
3011 3044 1.002366 CATCAAGGCGAGAAAGTCCG 58.998 55.000 0.00 0.00 0.00 4.79
3012 3045 1.066143 TCCATCAAGGCGAGAAAGTCC 60.066 52.381 0.00 0.00 37.29 3.85
3013 3046 2.093973 TCTCCATCAAGGCGAGAAAGTC 60.094 50.000 0.00 0.00 37.29 3.01
3014 3047 1.902508 TCTCCATCAAGGCGAGAAAGT 59.097 47.619 0.00 0.00 37.29 2.66
3015 3048 2.680312 TCTCCATCAAGGCGAGAAAG 57.320 50.000 0.00 0.00 37.29 2.62
3016 3049 2.420547 CCATCTCCATCAAGGCGAGAAA 60.421 50.000 0.00 0.00 33.90 2.52
3017 3050 1.139654 CCATCTCCATCAAGGCGAGAA 59.860 52.381 0.00 0.00 33.90 2.87
3018 3051 0.755079 CCATCTCCATCAAGGCGAGA 59.245 55.000 0.00 0.00 33.90 4.04
3019 3052 0.250209 CCCATCTCCATCAAGGCGAG 60.250 60.000 0.00 0.00 33.90 5.03
3020 3053 0.690744 TCCCATCTCCATCAAGGCGA 60.691 55.000 0.00 0.00 35.14 5.54
3021 3054 0.181114 TTCCCATCTCCATCAAGGCG 59.819 55.000 0.00 0.00 37.29 5.52
3022 3055 1.492176 TCTTCCCATCTCCATCAAGGC 59.508 52.381 0.00 0.00 37.29 4.35
3023 3056 3.393609 TGATCTTCCCATCTCCATCAAGG 59.606 47.826 0.00 0.00 39.47 3.61
3024 3057 4.701651 TGATCTTCCCATCTCCATCAAG 57.298 45.455 0.00 0.00 0.00 3.02
3025 3058 5.455392 TTTGATCTTCCCATCTCCATCAA 57.545 39.130 0.00 0.00 0.00 2.57
3026 3059 5.658198 ATTTGATCTTCCCATCTCCATCA 57.342 39.130 0.00 0.00 0.00 3.07
3027 3060 6.973460 AAATTTGATCTTCCCATCTCCATC 57.027 37.500 0.00 0.00 0.00 3.51
3028 3061 6.407752 GCAAAATTTGATCTTCCCATCTCCAT 60.408 38.462 10.26 0.00 0.00 3.41
3029 3062 5.105228 GCAAAATTTGATCTTCCCATCTCCA 60.105 40.000 10.26 0.00 0.00 3.86
3030 3063 5.128335 AGCAAAATTTGATCTTCCCATCTCC 59.872 40.000 10.26 0.00 0.00 3.71
3031 3064 6.040878 CAGCAAAATTTGATCTTCCCATCTC 58.959 40.000 10.26 0.00 0.00 2.75
3032 3065 5.626116 GCAGCAAAATTTGATCTTCCCATCT 60.626 40.000 10.26 0.00 0.00 2.90
3033 3066 4.569564 GCAGCAAAATTTGATCTTCCCATC 59.430 41.667 10.26 0.00 0.00 3.51
3034 3067 4.020039 TGCAGCAAAATTTGATCTTCCCAT 60.020 37.500 10.26 0.00 0.00 4.00
3035 3068 3.324268 TGCAGCAAAATTTGATCTTCCCA 59.676 39.130 10.26 0.00 0.00 4.37
3036 3069 3.681417 GTGCAGCAAAATTTGATCTTCCC 59.319 43.478 10.26 0.00 0.00 3.97
3037 3070 3.681417 GGTGCAGCAAAATTTGATCTTCC 59.319 43.478 11.86 1.45 0.00 3.46
3038 3071 4.563061 AGGTGCAGCAAAATTTGATCTTC 58.437 39.130 19.63 0.00 0.00 2.87
3039 3072 4.612264 AGGTGCAGCAAAATTTGATCTT 57.388 36.364 19.63 0.00 0.00 2.40
3040 3073 4.612264 AAGGTGCAGCAAAATTTGATCT 57.388 36.364 19.63 0.00 0.00 2.75
3041 3074 5.678132 AAAAGGTGCAGCAAAATTTGATC 57.322 34.783 19.63 0.00 0.00 2.92
3042 3075 5.589452 TCAAAAAGGTGCAGCAAAATTTGAT 59.411 32.000 22.71 0.00 32.42 2.57
3043 3076 4.940046 TCAAAAAGGTGCAGCAAAATTTGA 59.060 33.333 22.71 22.71 34.30 2.69
3044 3077 5.064962 TCTCAAAAAGGTGCAGCAAAATTTG 59.935 36.000 19.63 19.98 0.00 2.32
3045 3078 5.184711 TCTCAAAAAGGTGCAGCAAAATTT 58.815 33.333 19.63 10.44 0.00 1.82
3046 3079 4.768583 TCTCAAAAAGGTGCAGCAAAATT 58.231 34.783 19.63 4.61 0.00 1.82
3047 3080 4.405116 TCTCAAAAAGGTGCAGCAAAAT 57.595 36.364 19.63 0.00 0.00 1.82
3048 3081 3.883830 TCTCAAAAAGGTGCAGCAAAA 57.116 38.095 19.63 0.00 0.00 2.44
3049 3082 3.883830 TTCTCAAAAAGGTGCAGCAAA 57.116 38.095 19.63 0.00 0.00 3.68
3050 3083 3.520569 GTTTCTCAAAAAGGTGCAGCAA 58.479 40.909 19.63 0.00 0.00 3.91
3051 3084 2.159114 GGTTTCTCAAAAAGGTGCAGCA 60.159 45.455 19.63 0.00 0.00 4.41
3052 3085 2.101415 AGGTTTCTCAAAAAGGTGCAGC 59.899 45.455 8.11 8.11 0.00 5.25
3053 3086 4.391405 AAGGTTTCTCAAAAAGGTGCAG 57.609 40.909 0.00 0.00 0.00 4.41
3054 3087 4.953579 ACTAAGGTTTCTCAAAAAGGTGCA 59.046 37.500 0.00 0.00 0.00 4.57
3055 3088 5.281727 CACTAAGGTTTCTCAAAAAGGTGC 58.718 41.667 0.00 0.00 0.00 5.01
3056 3089 5.221244 CCCACTAAGGTTTCTCAAAAAGGTG 60.221 44.000 0.00 0.00 34.66 4.00
3057 3090 4.893524 CCCACTAAGGTTTCTCAAAAAGGT 59.106 41.667 0.00 0.00 34.66 3.50
3058 3091 4.280929 CCCCACTAAGGTTTCTCAAAAAGG 59.719 45.833 0.00 0.00 34.66 3.11
3059 3092 4.280929 CCCCCACTAAGGTTTCTCAAAAAG 59.719 45.833 0.00 0.00 34.66 2.27
3060 3093 4.219919 CCCCCACTAAGGTTTCTCAAAAA 58.780 43.478 0.00 0.00 34.66 1.94
3061 3094 3.839778 CCCCCACTAAGGTTTCTCAAAA 58.160 45.455 0.00 0.00 34.66 2.44
3062 3095 2.490168 GCCCCCACTAAGGTTTCTCAAA 60.490 50.000 0.00 0.00 34.66 2.69
3063 3096 1.074889 GCCCCCACTAAGGTTTCTCAA 59.925 52.381 0.00 0.00 34.66 3.02
3064 3097 0.696501 GCCCCCACTAAGGTTTCTCA 59.303 55.000 0.00 0.00 34.66 3.27
3065 3098 0.992695 AGCCCCCACTAAGGTTTCTC 59.007 55.000 0.00 0.00 34.66 2.87
3066 3099 0.698818 CAGCCCCCACTAAGGTTTCT 59.301 55.000 0.00 0.00 34.66 2.52
3067 3100 0.323451 CCAGCCCCCACTAAGGTTTC 60.323 60.000 0.00 0.00 34.66 2.78
3068 3101 0.774491 TCCAGCCCCCACTAAGGTTT 60.774 55.000 0.00 0.00 34.66 3.27
3069 3102 0.552615 ATCCAGCCCCCACTAAGGTT 60.553 55.000 0.00 0.00 34.66 3.50
3070 3103 0.552615 AATCCAGCCCCCACTAAGGT 60.553 55.000 0.00 0.00 34.66 3.50
3071 3104 0.106519 CAATCCAGCCCCCACTAAGG 60.107 60.000 0.00 0.00 37.03 2.69
3072 3105 0.625849 ACAATCCAGCCCCCACTAAG 59.374 55.000 0.00 0.00 0.00 2.18
3073 3106 0.331278 CACAATCCAGCCCCCACTAA 59.669 55.000 0.00 0.00 0.00 2.24
3074 3107 1.998530 CACAATCCAGCCCCCACTA 59.001 57.895 0.00 0.00 0.00 2.74
3075 3108 2.765969 CACAATCCAGCCCCCACT 59.234 61.111 0.00 0.00 0.00 4.00
3076 3109 3.070576 GCACAATCCAGCCCCCAC 61.071 66.667 0.00 0.00 0.00 4.61
3077 3110 2.855770 AAGCACAATCCAGCCCCCA 61.856 57.895 0.00 0.00 0.00 4.96
3078 3111 2.037847 AAGCACAATCCAGCCCCC 59.962 61.111 0.00 0.00 0.00 5.40
3079 3112 3.010413 GCAAGCACAATCCAGCCCC 62.010 63.158 0.00 0.00 0.00 5.80
3080 3113 1.610554 ATGCAAGCACAATCCAGCCC 61.611 55.000 0.00 0.00 0.00 5.19
3081 3114 0.248289 AATGCAAGCACAATCCAGCC 59.752 50.000 0.00 0.00 0.00 4.85
3082 3115 1.337447 ACAATGCAAGCACAATCCAGC 60.337 47.619 0.00 0.00 0.00 4.85
3083 3116 2.230508 AGACAATGCAAGCACAATCCAG 59.769 45.455 0.00 0.00 0.00 3.86
3084 3117 2.241160 AGACAATGCAAGCACAATCCA 58.759 42.857 0.00 0.00 0.00 3.41
3085 3118 3.428045 GGTAGACAATGCAAGCACAATCC 60.428 47.826 0.00 0.00 0.00 3.01
3086 3119 3.441572 AGGTAGACAATGCAAGCACAATC 59.558 43.478 0.00 0.00 0.00 2.67
3087 3120 3.424703 AGGTAGACAATGCAAGCACAAT 58.575 40.909 0.00 0.00 0.00 2.71
3088 3121 2.862541 AGGTAGACAATGCAAGCACAA 58.137 42.857 0.00 0.00 0.00 3.33
3089 3122 2.566833 AGGTAGACAATGCAAGCACA 57.433 45.000 0.00 0.00 0.00 4.57
3090 3123 3.077359 AGAAGGTAGACAATGCAAGCAC 58.923 45.455 0.00 0.00 0.00 4.40
3091 3124 3.244526 TGAGAAGGTAGACAATGCAAGCA 60.245 43.478 0.00 0.00 0.00 3.91
3092 3125 3.338249 TGAGAAGGTAGACAATGCAAGC 58.662 45.455 0.00 0.00 0.00 4.01
3093 3126 4.334759 CCATGAGAAGGTAGACAATGCAAG 59.665 45.833 0.00 0.00 0.00 4.01
3094 3127 4.263462 ACCATGAGAAGGTAGACAATGCAA 60.263 41.667 0.00 0.00 37.67 4.08
3095 3128 3.264193 ACCATGAGAAGGTAGACAATGCA 59.736 43.478 0.00 0.00 37.67 3.96
3096 3129 3.878778 ACCATGAGAAGGTAGACAATGC 58.121 45.455 0.00 0.00 37.67 3.56
3104 3137 3.534747 ACCCTACCTACCATGAGAAGGTA 59.465 47.826 15.67 15.67 41.86 3.08
3105 3138 2.318207 ACCCTACCTACCATGAGAAGGT 59.682 50.000 15.20 15.20 45.53 3.50
3106 3139 2.700897 CACCCTACCTACCATGAGAAGG 59.299 54.545 0.00 0.00 36.42 3.46
3107 3140 2.700897 CCACCCTACCTACCATGAGAAG 59.299 54.545 0.00 0.00 0.00 2.85
3108 3141 2.759355 CCACCCTACCTACCATGAGAA 58.241 52.381 0.00 0.00 0.00 2.87
3109 3142 1.691482 GCCACCCTACCTACCATGAGA 60.691 57.143 0.00 0.00 0.00 3.27
3110 3143 0.759346 GCCACCCTACCTACCATGAG 59.241 60.000 0.00 0.00 0.00 2.90
3111 3144 0.043485 TGCCACCCTACCTACCATGA 59.957 55.000 0.00 0.00 0.00 3.07
3112 3145 1.140312 ATGCCACCCTACCTACCATG 58.860 55.000 0.00 0.00 0.00 3.66
3113 3146 1.907240 AATGCCACCCTACCTACCAT 58.093 50.000 0.00 0.00 0.00 3.55
3114 3147 1.676248 AAATGCCACCCTACCTACCA 58.324 50.000 0.00 0.00 0.00 3.25
3115 3148 2.291346 ACAAAATGCCACCCTACCTACC 60.291 50.000 0.00 0.00 0.00 3.18
3116 3149 3.081710 ACAAAATGCCACCCTACCTAC 57.918 47.619 0.00 0.00 0.00 3.18
3117 3150 3.818295 AACAAAATGCCACCCTACCTA 57.182 42.857 0.00 0.00 0.00 3.08
3118 3151 2.694616 AACAAAATGCCACCCTACCT 57.305 45.000 0.00 0.00 0.00 3.08
3119 3152 2.758423 CCTAACAAAATGCCACCCTACC 59.242 50.000 0.00 0.00 0.00 3.18
3120 3153 2.758423 CCCTAACAAAATGCCACCCTAC 59.242 50.000 0.00 0.00 0.00 3.18
3121 3154 2.650322 TCCCTAACAAAATGCCACCCTA 59.350 45.455 0.00 0.00 0.00 3.53
3122 3155 1.431243 TCCCTAACAAAATGCCACCCT 59.569 47.619 0.00 0.00 0.00 4.34
3123 3156 1.931635 TCCCTAACAAAATGCCACCC 58.068 50.000 0.00 0.00 0.00 4.61
3124 3157 5.669164 TTTATCCCTAACAAAATGCCACC 57.331 39.130 0.00 0.00 0.00 4.61
3125 3158 6.538381 CCATTTTATCCCTAACAAAATGCCAC 59.462 38.462 11.61 0.00 43.45 5.01
3126 3159 6.441924 TCCATTTTATCCCTAACAAAATGCCA 59.558 34.615 11.61 1.24 43.45 4.92
3127 3160 6.761242 GTCCATTTTATCCCTAACAAAATGCC 59.239 38.462 11.61 3.65 43.45 4.40
3128 3161 7.277760 GTGTCCATTTTATCCCTAACAAAATGC 59.722 37.037 11.61 3.07 43.45 3.56
3129 3162 8.310382 TGTGTCCATTTTATCCCTAACAAAATG 58.690 33.333 10.55 10.55 43.99 2.32
3130 3163 8.429237 TGTGTCCATTTTATCCCTAACAAAAT 57.571 30.769 0.00 0.00 33.31 1.82
3131 3164 7.841282 TGTGTCCATTTTATCCCTAACAAAA 57.159 32.000 0.00 0.00 0.00 2.44
3132 3165 8.310382 CAATGTGTCCATTTTATCCCTAACAAA 58.690 33.333 0.00 0.00 39.28 2.83
3133 3166 7.671819 TCAATGTGTCCATTTTATCCCTAACAA 59.328 33.333 0.00 0.00 39.28 2.83
3134 3167 7.122055 GTCAATGTGTCCATTTTATCCCTAACA 59.878 37.037 0.00 0.00 39.28 2.41
3135 3168 7.122055 TGTCAATGTGTCCATTTTATCCCTAAC 59.878 37.037 0.00 0.00 39.28 2.34
3136 3169 7.122055 GTGTCAATGTGTCCATTTTATCCCTAA 59.878 37.037 0.00 0.00 39.28 2.69
3137 3170 6.601613 GTGTCAATGTGTCCATTTTATCCCTA 59.398 38.462 0.00 0.00 39.28 3.53
3138 3171 5.418840 GTGTCAATGTGTCCATTTTATCCCT 59.581 40.000 0.00 0.00 39.28 4.20
3139 3172 5.184864 TGTGTCAATGTGTCCATTTTATCCC 59.815 40.000 0.00 0.00 39.28 3.85
3140 3173 6.266168 TGTGTCAATGTGTCCATTTTATCC 57.734 37.500 0.00 0.00 39.28 2.59
3141 3174 6.753279 CCATGTGTCAATGTGTCCATTTTATC 59.247 38.462 0.00 0.00 39.28 1.75
3142 3175 6.436847 TCCATGTGTCAATGTGTCCATTTTAT 59.563 34.615 0.00 0.00 39.28 1.40
3143 3176 5.772169 TCCATGTGTCAATGTGTCCATTTTA 59.228 36.000 0.00 0.00 39.28 1.52
3144 3177 4.588106 TCCATGTGTCAATGTGTCCATTTT 59.412 37.500 0.00 0.00 39.28 1.82
3145 3178 4.151121 TCCATGTGTCAATGTGTCCATTT 58.849 39.130 0.00 0.00 39.28 2.32
3146 3179 3.765381 TCCATGTGTCAATGTGTCCATT 58.235 40.909 0.00 0.00 42.03 3.16
3147 3180 3.438216 TCCATGTGTCAATGTGTCCAT 57.562 42.857 0.00 0.00 0.00 3.41
3148 3181 2.947127 TCCATGTGTCAATGTGTCCA 57.053 45.000 0.00 0.00 0.00 4.02
3149 3182 3.346315 TCATCCATGTGTCAATGTGTCC 58.654 45.455 0.00 0.00 0.00 4.02
3150 3183 4.397103 ACATCATCCATGTGTCAATGTGTC 59.603 41.667 0.00 0.00 44.70 3.67
3151 3184 4.338012 ACATCATCCATGTGTCAATGTGT 58.662 39.130 0.00 0.00 44.70 3.72
3152 3185 4.638865 AGACATCATCCATGTGTCAATGTG 59.361 41.667 13.89 4.42 46.53 3.21
3153 3186 4.638865 CAGACATCATCCATGTGTCAATGT 59.361 41.667 13.89 6.85 46.53 2.71
3154 3187 4.638865 ACAGACATCATCCATGTGTCAATG 59.361 41.667 13.89 8.07 46.53 2.82
3155 3188 4.851843 ACAGACATCATCCATGTGTCAAT 58.148 39.130 13.89 1.38 46.53 2.57
3156 3189 4.256110 GACAGACATCATCCATGTGTCAA 58.744 43.478 13.89 0.00 46.53 3.18
3157 3190 3.261390 TGACAGACATCATCCATGTGTCA 59.739 43.478 13.89 10.06 46.53 3.58
3158 3191 3.620374 GTGACAGACATCATCCATGTGTC 59.380 47.826 5.49 5.49 46.53 3.67
3159 3192 3.603532 GTGACAGACATCATCCATGTGT 58.396 45.455 0.00 0.00 46.53 3.72
3160 3193 2.941064 GGTGACAGACATCATCCATGTG 59.059 50.000 0.00 0.00 46.53 3.21
3161 3194 2.573009 TGGTGACAGACATCATCCATGT 59.427 45.455 0.00 0.00 41.99 3.21
3162 3195 3.271055 TGGTGACAGACATCATCCATG 57.729 47.619 0.00 0.00 34.38 3.66
3163 3196 3.371273 CCTTGGTGACAGACATCATCCAT 60.371 47.826 0.00 0.00 44.54 3.41
3164 3197 2.026915 CCTTGGTGACAGACATCATCCA 60.027 50.000 0.00 0.00 44.54 3.41
3165 3198 2.026822 ACCTTGGTGACAGACATCATCC 60.027 50.000 0.00 0.00 44.54 3.51
3166 3199 3.005554 CACCTTGGTGACAGACATCATC 58.994 50.000 14.15 0.00 44.54 2.92
3167 3200 2.290514 CCACCTTGGTGACAGACATCAT 60.291 50.000 20.27 0.00 44.54 2.45
3168 3201 1.072173 CCACCTTGGTGACAGACATCA 59.928 52.381 20.27 0.00 44.54 3.07
3169 3202 1.347707 TCCACCTTGGTGACAGACATC 59.652 52.381 20.27 0.00 44.54 3.06
3170 3203 1.434188 TCCACCTTGGTGACAGACAT 58.566 50.000 20.27 0.00 44.54 3.06
3171 3204 1.072173 CATCCACCTTGGTGACAGACA 59.928 52.381 20.27 0.00 44.54 3.41
3172 3205 1.611673 CCATCCACCTTGGTGACAGAC 60.612 57.143 20.27 0.00 44.54 3.51
3173 3206 0.692476 CCATCCACCTTGGTGACAGA 59.308 55.000 20.27 10.00 44.54 3.41
3174 3207 0.401738 ACCATCCACCTTGGTGACAG 59.598 55.000 20.27 9.25 45.71 3.51
3175 3208 0.850100 AACCATCCACCTTGGTGACA 59.150 50.000 20.27 7.50 46.75 3.58
3176 3209 1.073923 AGAACCATCCACCTTGGTGAC 59.926 52.381 20.27 4.03 46.75 3.67
3177 3210 1.444933 AGAACCATCCACCTTGGTGA 58.555 50.000 20.27 7.70 46.75 4.02
3178 3211 3.244911 ACTTAGAACCATCCACCTTGGTG 60.245 47.826 12.54 12.54 46.75 4.17
3180 3213 3.347216 CACTTAGAACCATCCACCTTGG 58.653 50.000 0.00 0.00 39.43 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.