AutoCloner

Multiple sequence alignment - TraesCS5D01G212300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G212300	chr5D	100.000	3040	0	0	1	3040	321615217	321618256	0.000000e+00	5614
1	TraesCS5D01G212300	chr5D	88.498	313	17	4	1665	1977	321616588	321616881	8.010000e-96	361
2	TraesCS5D01G212300	chr5D	88.498	313	17	4	1372	1665	321616881	321617193	8.010000e-96	361
3	TraesCS5D01G212300	chr5D	84.351	262	35	4	2308	2567	393074896	393075153	5.030000e-63	252
4	TraesCS5D01G212300	chr5B	90.971	2802	171	44	1	2768	372247719	372250472	0.000000e+00	3698
5	TraesCS5D01G212300	chr5B	90.879	307	15	3	1372	1665	372249365	372249671	1.700000e-107	399
6	TraesCS5D01G212300	chr5B	88.179	313	18	6	1665	1977	372249072	372249365	3.730000e-94	355
7	TraesCS5D01G212300	chr5A	92.517	2459	123	24	1	2434	415674300	415676722	0.000000e+00	3465
8	TraesCS5D01G212300	chr5A	80.939	703	111	14	2347	3040	2731698	2732386	4.460000e-148	534
9	TraesCS5D01G212300	chr5A	89.137	313	15	7	1372	1665	415675959	415676271	3.700000e-99	372
10	TraesCS5D01G212300	chr5A	88.411	302	17	5	1676	1977	415675676	415675959	6.240000e-92	348
11	TraesCS5D01G212300	chr2D	83.288	742	114	7	2307	3040	595273246	595273985	0.000000e+00	675
12	TraesCS5D01G212300	chr3B	84.380	685	97	7	2355	3034	106970206	106970885	0.000000e+00	664
13	TraesCS5D01G212300	chr3B	82.789	674	98	13	2321	2980	143073631	143074300	1.210000e-163	586
14	TraesCS5D01G212300	chr3B	83.562	219	33	2	2260	2475	531784713	531784495	5.140000e-48	202
15	TraesCS5D01G212300	chr7D	83.092	692	101	12	2301	2982	13303525	13302840	1.550000e-172	616
16	TraesCS5D01G212300	chr6B	81.221	655	109	10	2302	2947	524061923	524061274	1.620000e-142	516
17	TraesCS5D01G212300	chr6D	83.648	477	65	10	2301	2768	354226083	354226555	1.290000e-118	436
18	TraesCS5D01G212300	chr7B	82.857	490	74	9	2540	3022	692320374	692319888	6.020000e-117	431
19	TraesCS5D01G212300	chr7B	76.068	468	83	20	2260	2705	573266819	573267279	1.840000e-52	217
20	TraesCS5D01G212300	chr7B	84.239	184	23	5	2257	2435	665570702	665570884	1.120000e-39	174
21	TraesCS5D01G212300	chr3D	81.211	479	76	12	2556	3029	579756646	579757115	1.030000e-99	374
22	TraesCS5D01G212300	chr3D	83.562	219	33	3	2260	2475	405807588	405807370	5.140000e-48	202
23	TraesCS5D01G212300	chr1A	81.166	223	31	8	2256	2475	499406836	499407050	5.210000e-38	169
24	TraesCS5D01G212300	chr1A	79.476	229	36	10	2254	2477	570865371	570865593	5.250000e-33	152
25	TraesCS5D01G212300	chr1D	82.390	159	22	5	2259	2413	453420042	453420198	1.900000e-27	134

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G212300	chr5D	321615217	321618256	3039	False	2112	5614	92.332000	1	3040	3	chr5D.!!$F2	3039
1	TraesCS5D01G212300	chr5B	372247719	372250472	2753	False	1484	3698	90.009667	1	2768	3	chr5B.!!$F1	2767
2	TraesCS5D01G212300	chr5A	415674300	415676722	2422	False	1395	3465	90.021667	1	2434	3	chr5A.!!$F2	2433
3	TraesCS5D01G212300	chr5A	2731698	2732386	688	False	534	534	80.939000	2347	3040	1	chr5A.!!$F1	693
4	TraesCS5D01G212300	chr2D	595273246	595273985	739	False	675	675	83.288000	2307	3040	1	chr2D.!!$F1	733
5	TraesCS5D01G212300	chr3B	106970206	106970885	679	False	664	664	84.380000	2355	3034	1	chr3B.!!$F1	679
6	TraesCS5D01G212300	chr3B	143073631	143074300	669	False	586	586	82.789000	2321	2980	1	chr3B.!!$F2	659
7	TraesCS5D01G212300	chr7D	13302840	13303525	685	True	616	616	83.092000	2301	2982	1	chr7D.!!$R1	681
8	TraesCS5D01G212300	chr6B	524061274	524061923	649	True	516	516	81.221000	2302	2947	1	chr6B.!!$R1	645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
413	424	0.179018	CCTAATTTCCCGAGGGCCAG	60.179	60.0	6.18	0.0	34.68	4.85	F
655	675	0.319405	AAAGTCCAATGGCAAGCAGC	59.681	50.0	0.00	0.0	44.65	5.25	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1933	1970	0.038159	ACGCTTCTCTTCTTCCACCG	60.038	55.000	0.0	0.0	0.0	4.94	R
2255	2304	1.134367	CGTCGTTGAGATGCCCTAAGA	59.866	52.381	0.0	0.0	0.0	2.10	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
106	114	1.670967	GCTGCTGATTTGCCTTTCACC	60.671	52.381	0.00	0.00	0.00	4.02
201	209	1.064758	TCCATTTTGGCCGTAGCAGAT	60.065	47.619	0.00	0.00	42.56	2.90
216	224	0.617413	CAGATGGTCTTGCCTGTCCT	59.383	55.000	0.00	0.00	38.35	3.85
270	281	2.481449	CGGTAGTGCCTGATACTCAACC	60.481	54.545	0.00	0.00	34.25	3.77
275	286	1.090052	GCCTGATACTCAACCACCGC	61.090	60.000	0.00	0.00	0.00	5.68
277	288	1.754803	CCTGATACTCAACCACCGCTA	59.245	52.381	0.00	0.00	0.00	4.26
278	289	2.481449	CCTGATACTCAACCACCGCTAC	60.481	54.545	0.00	0.00	0.00	3.58
279	290	1.479323	TGATACTCAACCACCGCTACC	59.521	52.381	0.00	0.00	0.00	3.18
280	291	0.458669	ATACTCAACCACCGCTACCG	59.541	55.000	0.00	0.00	0.00	4.02
318	329	2.892425	CGAGGTTGGATGCTCCGC	60.892	66.667	0.00	0.00	40.17	5.54
413	424	0.179018	CCTAATTTCCCGAGGGCCAG	60.179	60.000	6.18	0.00	34.68	4.85
589	609	3.160047	CGGAGCCTGCCCTGAGAT	61.160	66.667	0.00	0.00	0.00	2.75
648	668	1.595093	CCGTCCCAAAGTCCAATGGC	61.595	60.000	0.00	0.00	35.28	4.40
649	669	0.893270	CGTCCCAAAGTCCAATGGCA	60.893	55.000	0.00	0.00	35.28	4.92
655	675	0.319405	AAAGTCCAATGGCAAGCAGC	59.681	50.000	0.00	0.00	44.65	5.25
658	678	0.737219	GTCCAATGGCAAGCAGCTAG	59.263	55.000	0.00	0.00	44.79	3.42
659	679	0.329261	TCCAATGGCAAGCAGCTAGT	59.671	50.000	0.00	0.00	44.79	2.57
660	680	1.559219	TCCAATGGCAAGCAGCTAGTA	59.441	47.619	0.00	0.00	44.79	1.82
661	681	1.672881	CCAATGGCAAGCAGCTAGTAC	59.327	52.381	0.00	0.00	44.79	2.73
668	688	3.181493	GGCAAGCAGCTAGTACGTACTAA	60.181	47.826	29.86	17.10	44.79	2.24
671	694	4.612932	AGCAGCTAGTACGTACTAACAC	57.387	45.455	29.86	22.66	38.24	3.32
810	833	6.404403	CCTTGCATTGCAGCATAGATTATAGG	60.404	42.308	11.76	7.26	45.19	2.57
811	834	5.563592	TGCATTGCAGCATAGATTATAGGT	58.436	37.500	7.38	0.00	40.11	3.08
812	835	6.710278	TGCATTGCAGCATAGATTATAGGTA	58.290	36.000	7.38	0.00	40.11	3.08
814	837	6.820656	GCATTGCAGCATAGATTATAGGTACT	59.179	38.462	3.15	0.00	46.37	2.73
833	858	1.346068	CTACTATCTTGGCCAGCCTCC	59.654	57.143	5.11	0.00	36.94	4.30
859	884	2.879002	GGTAGCGGAGTACCTAAACC	57.121	55.000	0.00	0.00	39.65	3.27
930	961	3.653009	CCTGCTGCGTGTGTGTGG	61.653	66.667	0.00	0.00	0.00	4.17
973	1004	1.140312	TCTTGCCTCTGTCAACCCTT	58.860	50.000	0.00	0.00	0.00	3.95
1005	1036	2.993008	GCTGCAGTGGAGATGGGA	59.007	61.111	16.83	0.00	0.00	4.37
1089	1120	2.574399	GCGGAGAAGAAGGTCGCT	59.426	61.111	0.00	0.00	42.62	4.93
1200	1233	3.851976	TTCCTCTTCACTCGCTACTTC	57.148	47.619	0.00	0.00	0.00	3.01
1255	1288	0.507358	GTTGCGGTCGTGTTCTCTTC	59.493	55.000	0.00	0.00	0.00	2.87
1272	1305	9.166173	TGTTCTCTTCATGTTTATTAGTCCATG	57.834	33.333	0.00	0.00	36.80	3.66
1278	1311	8.722480	TTCATGTTTATTAGTCCATGAGTCAG	57.278	34.615	0.00	0.00	43.12	3.51
1317	1350	2.501261	GTAGGGTGTCAACAAGTTCCC	58.499	52.381	0.00	0.42	35.56	3.97
1335	1368	1.074423	CATGGATAGCAGCAGGGGG	59.926	63.158	0.00	0.00	0.00	5.40
1560	1597	4.020617	TTGAGCCCTCCACTGCGG	62.021	66.667	0.00	0.00	0.00	5.69
1598	1635	2.592308	GCCGAAATCCTGGAGCCT	59.408	61.111	1.52	0.00	0.00	4.58
1608	1645	3.317109	TGGAGCCTGAGGATGCAG	58.683	61.111	6.92	0.00	33.87	4.41
1743	1780	1.792949	CCTTTTGACAGAACGACGAGG	59.207	52.381	0.00	0.00	0.00	4.63
1928	1965	1.524621	GGATCCCCAGACACATGCG	60.525	63.158	0.00	0.00	0.00	4.73
1933	1970	3.807538	CCAGACACATGCGCAGGC	61.808	66.667	23.75	7.56	40.52	4.85
1949	1986	0.610687	AGGCGGTGGAAGAAGAGAAG	59.389	55.000	0.00	0.00	0.00	2.85
1987	2024	4.839121	TCAGTTCAGGTTACTGTTGTTGT	58.161	39.130	0.00	0.00	45.14	3.32
2002	2039	3.149436	TGTTGTTTCTGCTGAAAGTGC	57.851	42.857	17.91	11.37	42.15	4.40
2007	2044	3.181497	TGTTTCTGCTGAAAGTGCTGAAC	60.181	43.478	17.91	6.34	44.07	3.18
2255	2304	5.384063	TGTCATTTCACGGTTTATGCAAT	57.616	34.783	0.00	0.00	0.00	3.56
2273	2323	3.797039	CAATCTTAGGGCATCTCAACGA	58.203	45.455	0.00	0.00	0.00	3.85
2277	2327	1.399714	TAGGGCATCTCAACGACGAT	58.600	50.000	0.00	0.00	0.00	3.73
2278	2328	0.537188	AGGGCATCTCAACGACGATT	59.463	50.000	0.00	0.00	0.00	3.34
2280	2330	1.471676	GGGCATCTCAACGACGATTCT	60.472	52.381	0.00	0.00	0.00	2.40
2291	2341	5.468746	TCAACGACGATTCTCAAATTTCCTT	59.531	36.000	0.00	0.00	0.00	3.36
2318	2368	3.307108	TCCACGGACACGGATGCA	61.307	61.111	0.00	0.00	46.48	3.96
2337	2387	2.280186	GAGGCCGCTATCCAACCG	60.280	66.667	0.00	0.00	0.00	4.44
2338	2388	4.547367	AGGCCGCTATCCAACCGC	62.547	66.667	0.00	0.00	0.00	5.68
2344	2394	1.743995	GCTATCCAACCGCAACCGT	60.744	57.895	0.00	0.00	0.00	4.83
2345	2395	1.702491	GCTATCCAACCGCAACCGTC	61.702	60.000	0.00	0.00	0.00	4.79
2434	2486	6.904498	ACATGACGAATTTCATAAAAACCGA	58.096	32.000	0.00	0.00	34.29	4.69
2496	2551	2.746362	CGAAACCGGACTAGTCTACAGT	59.254	50.000	21.88	11.38	0.00	3.55
2505	2560	2.857575	TAGTCTACAGTCGGCGCCGA	62.858	60.000	45.37	45.37	46.87	5.54
2576	2634	2.511600	GCGGGTCTCCAATGTCGG	60.512	66.667	0.00	0.00	0.00	4.79
2618	2676	1.402984	GCCTCGGAGGTATATGCTTCG	60.403	57.143	24.30	0.00	37.80	3.79
2651	2709	2.358737	CGCTTCCCCACCACTCAC	60.359	66.667	0.00	0.00	0.00	3.51
2737	2796	4.245308	AGGTTGGTTCTTAGGTAAGGGAA	58.755	43.478	0.00	0.00	34.14	3.97
2803	2862	3.712907	GCCTCGGTGGTGGCCTTA	61.713	66.667	3.32	0.00	45.06	2.69
2818	2877	0.254747	CCTTAATGGGACCCAAGCGA	59.745	55.000	19.58	3.14	36.95	4.93
2845	2904	1.402456	CCACCCGTGTTCTACTTCTCG	60.402	57.143	0.00	0.00	0.00	4.04
2846	2905	1.538512	CACCCGTGTTCTACTTCTCGA	59.461	52.381	0.00	0.00	0.00	4.04
2850	2909	3.427243	CCGTGTTCTACTTCTCGATGAC	58.573	50.000	0.00	0.00	0.00	3.06
2852	2911	3.427243	GTGTTCTACTTCTCGATGACGG	58.573	50.000	0.00	0.00	40.21	4.79
2923	2987	3.944015	GACTTATTTCTCTGCCTGCATGT	59.056	43.478	0.00	0.00	0.00	3.21
2983	3047	3.449227	CACTGGAGGCGCGGTAGA	61.449	66.667	8.83	0.00	0.00	2.59
2985	3049	2.058595	ACTGGAGGCGCGGTAGAAT	61.059	57.895	8.83	0.00	0.00	2.40
2997	3061	1.548973	GGTAGAATGCGGCATCGTCG	61.549	60.000	16.98	0.00	38.89	5.12
2999	3063	0.594028	TAGAATGCGGCATCGTCGAC	60.594	55.000	16.98	5.18	38.89	4.20

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
12	13	2.747446	ACATACGGCAACATCCTTGTTC	59.253	45.455	0.00	0.00	44.24	3.18
106	114	0.445436	GAGGCATTCTGACAGCAACG	59.555	55.000	0.00	0.00	0.00	4.10
201	209	0.108585	GACAAGGACAGGCAAGACCA	59.891	55.000	0.00	0.00	43.14	4.02
216	224	9.816787	ACTAACCCTTTTATTTTATCTGGACAA	57.183	29.630	0.00	0.00	0.00	3.18
270	281	0.601841	AAACTCAACCGGTAGCGGTG	60.602	55.000	37.12	28.35	42.06	4.94
275	286	8.128016	GTTGATAAGATAAACTCAACCGGTAG	57.872	38.462	8.00	4.84	40.87	3.18
277	288	6.980051	GTTGATAAGATAAACTCAACCGGT	57.020	37.500	0.00	0.00	40.87	5.28
281	292	6.817140	ACCTCGGTTGATAAGATAAACTCAAC	59.183	38.462	5.86	5.86	44.19	3.18
282	293	6.942976	ACCTCGGTTGATAAGATAAACTCAA	58.057	36.000	0.00	0.00	0.00	3.02
283	294	6.540438	ACCTCGGTTGATAAGATAAACTCA	57.460	37.500	0.00	0.00	0.00	3.41
413	424	3.746492	ACAGCTGGTTCTCGTTGTTAATC	59.254	43.478	19.93	0.00	0.00	1.75
558	578	1.296727	GCTCCGGAATTTCCTAACCG	58.703	55.000	5.23	0.00	44.16	4.44
586	606	1.604593	GCTGGTGTGTTGGGCATCT	60.605	57.895	0.00	0.00	0.00	2.90
589	609	2.519063	CTGCTGGTGTGTTGGGCA	60.519	61.111	0.00	0.00	0.00	5.36
648	668	4.792189	GTGTTAGTACGTACTAGCTGCTTG	59.208	45.833	34.65	8.80	39.70	4.01
649	669	4.142513	GGTGTTAGTACGTACTAGCTGCTT	60.143	45.833	34.65	15.37	39.70	3.91
655	675	5.973651	TCATCGGTGTTAGTACGTACTAG	57.026	43.478	28.89	19.69	39.69	2.57
658	678	4.285292	CCATCATCGGTGTTAGTACGTAC	58.715	47.826	18.10	18.10	0.00	3.67
659	679	3.316029	CCCATCATCGGTGTTAGTACGTA	59.684	47.826	0.00	0.00	0.00	3.57
660	680	2.100252	CCCATCATCGGTGTTAGTACGT	59.900	50.000	0.00	0.00	0.00	3.57
661	681	2.359848	TCCCATCATCGGTGTTAGTACG	59.640	50.000	0.00	0.00	0.00	3.67
668	688	1.839191	CCCATCCCATCATCGGTGT	59.161	57.895	0.00	0.00	0.00	4.16
671	694	1.303074	CTGCCCATCCCATCATCGG	60.303	63.158	0.00	0.00	0.00	4.18
723	746	5.614887	GCAACTCCTGAATAACAAACTCGTC	60.615	44.000	0.00	0.00	0.00	4.20
810	833	2.966516	AGGCTGGCCAAGATAGTAGTAC	59.033	50.000	7.01	0.00	38.92	2.73
811	834	3.231818	GAGGCTGGCCAAGATAGTAGTA	58.768	50.000	7.01	0.00	38.92	1.82
812	835	2.043227	GAGGCTGGCCAAGATAGTAGT	58.957	52.381	7.01	0.00	38.92	2.73
814	837	1.343985	TGGAGGCTGGCCAAGATAGTA	60.344	52.381	7.01	0.00	38.92	1.82
815	838	0.621571	TGGAGGCTGGCCAAGATAGT	60.622	55.000	7.01	0.00	38.92	2.12
816	839	0.769873	ATGGAGGCTGGCCAAGATAG	59.230	55.000	7.01	0.00	39.21	2.08
817	840	0.475475	CATGGAGGCTGGCCAAGATA	59.525	55.000	7.01	0.00	39.21	1.98
833	858	0.249489	GTACTCCGCTACCTGCCATG	60.249	60.000	0.00	0.00	38.78	3.66
934	965	0.912486	ACCAGATAGCCAGGAACACC	59.088	55.000	0.00	0.00	0.00	4.16
1089	1120	2.564561	TTTCAGCCACAGCCACACCA	62.565	55.000	0.00	0.00	41.25	4.17
1200	1233	4.934001	ACATGCTCTTCTGTCACTGTATTG	59.066	41.667	0.00	0.00	0.00	1.90
1245	1278	8.547967	TGGACTAATAAACATGAAGAGAACAC	57.452	34.615	0.00	0.00	0.00	3.32
1255	1288	8.771766	CATCTGACTCATGGACTAATAAACATG	58.228	37.037	0.00	0.00	41.44	3.21
1272	1305	7.040409	ACCAAACCAAGTTTTATCATCTGACTC	60.040	37.037	0.00	0.00	33.10	3.36
1278	1311	6.436218	ACCCTACCAAACCAAGTTTTATCATC	59.564	38.462	0.00	0.00	33.10	2.92
1317	1350	1.074423	CCCCCTGCTGCTATCCATG	59.926	63.158	0.00	0.00	0.00	3.66
1335	1368	7.116736	TCCAGATAAAAGGGGATGTTAGAAAC	58.883	38.462	0.00	0.00	0.00	2.78
1472	1509	2.304470	AGGTTCTTCAGCCTTCTTCTCC	59.696	50.000	0.00	0.00	0.00	3.71
1560	1597	2.032634	TGTGATTTGGCTCGGTCGC	61.033	57.895	0.00	0.00	0.00	5.19
1608	1645	2.821366	CACCACCTGCGCATCCTC	60.821	66.667	12.24	0.00	0.00	3.71
1743	1780	3.444805	AGGAGCCTCGACGTCAGC	61.445	66.667	17.16	14.72	0.00	4.26
1810	1847	3.067106	TCCTCTGTCGCTTCATTTTCAC	58.933	45.455	0.00	0.00	0.00	3.18
1904	1941	2.060383	TGTCTGGGGATCCTCTGCG	61.060	63.158	14.22	1.31	0.00	5.18
1928	1965	1.743252	CTCTTCTTCCACCGCCTGC	60.743	63.158	0.00	0.00	0.00	4.85
1933	1970	0.038159	ACGCTTCTCTTCTTCCACCG	60.038	55.000	0.00	0.00	0.00	4.94
1949	1986	1.293924	CTGAATCAGGATCCACACGC	58.706	55.000	15.82	0.56	0.00	5.34
1987	2024	3.016031	TGTTCAGCACTTTCAGCAGAAA	58.984	40.909	4.09	4.09	38.85	2.52
2002	2039	1.423395	GACGACCTTGCTCTGTTCAG	58.577	55.000	0.00	0.00	0.00	3.02
2007	2044	2.811317	GGCGACGACCTTGCTCTG	60.811	66.667	0.00	0.00	0.00	3.35
2057	2094	5.385198	TCAGGGGCATAAATATTTCCTCAC	58.615	41.667	3.39	0.00	0.00	3.51
2071	2108	3.400322	ACCATTATCAATCTCAGGGGCAT	59.600	43.478	0.00	0.00	0.00	4.40
2098	2136	4.902443	TTACAGCACGGAAATGAACAAA	57.098	36.364	0.00	0.00	0.00	2.83
2134	2172	6.900568	TGCATACACAGAAAAACAAAAAGG	57.099	33.333	0.00	0.00	0.00	3.11
2135	2173	7.373966	GCAATGCATACACAGAAAAACAAAAAG	59.626	33.333	0.00	0.00	0.00	2.27
2136	2174	7.148356	TGCAATGCATACACAGAAAAACAAAAA	60.148	29.630	2.72	0.00	31.71	1.94
2137	2175	6.314648	TGCAATGCATACACAGAAAAACAAAA	59.685	30.769	2.72	0.00	31.71	2.44
2255	2304	1.134367	CGTCGTTGAGATGCCCTAAGA	59.866	52.381	0.00	0.00	0.00	2.10
2273	2323	3.127030	GCGGAAGGAAATTTGAGAATCGT	59.873	43.478	0.00	0.00	38.61	3.73
2277	2327	3.443681	GGATGCGGAAGGAAATTTGAGAA	59.556	43.478	0.00	0.00	32.68	2.87
2278	2328	3.016736	GGATGCGGAAGGAAATTTGAGA	58.983	45.455	0.00	0.00	32.68	3.27
2280	2330	1.742831	CGGATGCGGAAGGAAATTTGA	59.257	47.619	0.00	0.00	32.68	2.69
2318	2368	1.527370	GGTTGGATAGCGGCCTCTT	59.473	57.895	0.00	0.00	0.00	2.85
2337	2387	2.293399	AGAGTTTGAAATGGACGGTTGC	59.707	45.455	0.00	0.00	0.00	4.17
2338	2388	4.568152	AAGAGTTTGAAATGGACGGTTG	57.432	40.909	0.00	0.00	0.00	3.77
2344	2394	8.716909	GTTTGTTGAAAAAGAGTTTGAAATGGA	58.283	29.630	0.00	0.00	0.00	3.41
2345	2395	7.962373	GGTTTGTTGAAAAAGAGTTTGAAATGG	59.038	33.333	0.00	0.00	0.00	3.16
2434	2486	6.056884	TGTCCAAAATGTAACCGTCTTAGTT	58.943	36.000	0.00	0.00	0.00	2.24
2470	2522	3.646946	AGACTAGTCCGGTTTCGTTTTC	58.353	45.455	19.38	0.00	33.95	2.29
2496	2551	2.643272	GATATCTGTCGGCGCCGA	59.357	61.111	45.37	45.37	46.87	5.54
2505	2560	2.956333	TGTCGTCGGAATGGATATCTGT	59.044	45.455	2.05	0.00	0.00	3.41
2737	2796	3.976701	CTCTCGCCGGCCACCATTT	62.977	63.158	23.46	0.00	0.00	2.32
2803	2862	2.046314	CGTCGCTTGGGTCCCATT	60.046	61.111	12.68	0.00	31.53	3.16
2888	2950	1.802337	ATAAGTCGGCTGCGCGGATA	61.802	55.000	23.20	0.05	39.83	2.59
2982	3046	2.621000	GTCGACGATGCCGCATTC	59.379	61.111	7.43	1.00	39.95	2.67
2983	3047	3.254654	CGTCGACGATGCCGCATT	61.255	61.111	33.35	0.00	43.02	3.56
2991	3055	4.831307	GTCGCTGCCGTCGACGAT	62.831	66.667	37.65	0.00	45.19	3.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.