Multiple sequence alignment - TraesCS5D01G211900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G211900 chr5D 100.000 7712 0 0 1 7712 320879984 320887695 0.000000e+00 14242.0
1 TraesCS5D01G211900 chr5D 96.037 429 15 1 2350 2778 320881908 320882334 0.000000e+00 697.0
2 TraesCS5D01G211900 chr5D 96.037 429 15 1 1925 2351 320882333 320882761 0.000000e+00 697.0
3 TraesCS5D01G211900 chr5D 92.683 164 12 0 4116 4279 198955068 198954905 3.600000e-58 237.0
4 TraesCS5D01G211900 chr5A 96.771 1982 48 12 4215 6192 413419549 413417580 0.000000e+00 3291.0
5 TraesCS5D01G211900 chr5A 92.547 1610 82 19 2544 4121 413421146 413419543 0.000000e+00 2274.0
6 TraesCS5D01G211900 chr5A 91.313 1485 48 22 666 2082 413422618 413421147 0.000000e+00 1953.0
7 TraesCS5D01G211900 chr5A 96.000 700 17 5 6305 7001 413417582 413416891 0.000000e+00 1127.0
8 TraesCS5D01G211900 chr5A 85.737 617 78 7 13 626 413423677 413423068 1.810000e-180 643.0
9 TraesCS5D01G211900 chr5A 88.175 389 20 7 7150 7515 413416717 413416332 2.550000e-119 440.0
10 TraesCS5D01G211900 chr5A 91.593 226 16 2 2119 2342 413421146 413420922 7.520000e-80 309.0
11 TraesCS5D01G211900 chr5A 97.468 158 4 0 2350 2507 413421304 413421147 3.550000e-68 270.0
12 TraesCS5D01G211900 chr5A 91.279 172 13 2 4116 4286 320214405 320214235 4.650000e-57 233.0
13 TraesCS5D01G211900 chr5A 91.503 153 12 1 7561 7712 413415865 413415713 7.840000e-50 209.0
14 TraesCS5D01G211900 chr5A 84.722 72 2 5 7507 7569 413416297 413416226 6.460000e-06 63.9
15 TraesCS5D01G211900 chr5B 94.488 1923 77 16 4275 6192 372092541 372094439 0.000000e+00 2937.0
16 TraesCS5D01G211900 chr5B 92.142 1807 88 15 2350 4118 372090750 372092540 0.000000e+00 2501.0
17 TraesCS5D01G211900 chr5B 90.222 1759 91 22 654 2351 372089433 372091171 0.000000e+00 2220.0
18 TraesCS5D01G211900 chr5B 97.044 406 9 3 6303 6707 372094435 372094838 0.000000e+00 680.0
19 TraesCS5D01G211900 chr5B 84.983 606 76 10 2 604 372088409 372089002 1.110000e-167 601.0
20 TraesCS5D01G211900 chr5B 94.909 275 13 1 7438 7711 372103997 372104271 5.530000e-116 429.0
21 TraesCS5D01G211900 chr5B 90.816 294 25 2 7150 7442 372095251 372095543 7.250000e-105 392.0
22 TraesCS5D01G211900 chr5B 82.973 370 34 16 6795 7150 372094845 372095199 2.700000e-79 307.0
23 TraesCS5D01G211900 chr3A 93.827 1134 46 11 2994 4114 64996609 64995487 0.000000e+00 1685.0
24 TraesCS5D01G211900 chr3A 95.928 835 29 5 4279 5112 64995474 64994644 0.000000e+00 1349.0
25 TraesCS5D01G211900 chr3D 95.477 818 33 4 4295 5112 53616548 53615735 0.000000e+00 1303.0
26 TraesCS5D01G211900 chr3D 92.517 294 12 5 3831 4114 53616840 53616547 5.570000e-111 412.0
27 TraesCS5D01G211900 chr3D 91.279 172 13 2 4106 4276 131485431 131485261 4.650000e-57 233.0
28 TraesCS5D01G211900 chr3B 96.618 207 7 0 4714 4920 84442047 84441841 2.060000e-90 344.0
29 TraesCS5D01G211900 chr3B 94.118 221 10 2 4505 4722 84443910 84443690 4.460000e-87 333.0
30 TraesCS5D01G211900 chr3B 96.648 179 5 1 4934 5112 84437995 84437818 5.850000e-76 296.0
31 TraesCS5D01G211900 chr6B 94.444 162 9 0 4115 4276 127605974 127605813 4.620000e-62 250.0
32 TraesCS5D01G211900 chr6B 92.814 167 12 0 4114 4280 36133502 36133668 7.730000e-60 243.0
33 TraesCS5D01G211900 chr1B 93.373 166 10 1 4112 4276 615123984 615124149 2.150000e-60 244.0
34 TraesCS5D01G211900 chr1B 92.248 129 10 0 6187 6315 332136278 332136150 4.750000e-42 183.0
35 TraesCS5D01G211900 chr1B 90.769 130 10 2 6189 6317 630918557 630918429 1.030000e-38 172.0
36 TraesCS5D01G211900 chr6D 91.228 171 15 0 4116 4286 402128478 402128308 4.650000e-57 233.0
37 TraesCS5D01G211900 chr1A 89.062 192 16 5 4113 4303 84012383 84012570 4.650000e-57 233.0
38 TraesCS5D01G211900 chr4D 88.205 195 18 5 4106 4299 21147724 21147914 2.170000e-55 228.0
39 TraesCS5D01G211900 chr7D 91.791 134 11 0 6173 6306 162791863 162791996 3.670000e-43 187.0
40 TraesCS5D01G211900 chr7D 93.277 119 8 0 6189 6307 119900278 119900396 7.950000e-40 176.0
41 TraesCS5D01G211900 chr7D 92.742 124 5 3 6188 6309 176125157 176125278 7.950000e-40 176.0
42 TraesCS5D01G211900 chr7D 91.870 123 10 0 6186 6308 48534427 48534305 1.030000e-38 172.0
43 TraesCS5D01G211900 chr7D 88.356 146 13 2 6185 6326 50726609 50726754 1.030000e-38 172.0
44 TraesCS5D01G211900 chr7B 89.726 146 15 0 3244 3389 704660896 704661041 3.670000e-43 187.0
45 TraesCS5D01G211900 chr4B 90.840 131 10 2 6185 6313 592702149 592702019 2.860000e-39 174.0
46 TraesCS5D01G211900 chr4B 91.870 123 10 0 6188 6310 664062433 664062311 1.030000e-38 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G211900 chr5D 320879984 320887695 7711 False 14242.000000 14242 100.000000 1 7712 1 chr5D.!!$F1 7711
1 TraesCS5D01G211900 chr5D 320881908 320882761 853 False 697.000000 697 96.037000 1925 2778 2 chr5D.!!$F2 853
2 TraesCS5D01G211900 chr5A 413415713 413423677 7964 True 1057.990000 3291 91.582900 13 7712 10 chr5A.!!$R2 7699
3 TraesCS5D01G211900 chr5B 372088409 372095543 7134 False 1376.857143 2937 90.381143 2 7442 7 chr5B.!!$F2 7440
4 TraesCS5D01G211900 chr3A 64994644 64996609 1965 True 1517.000000 1685 94.877500 2994 5112 2 chr3A.!!$R1 2118
5 TraesCS5D01G211900 chr3D 53615735 53616840 1105 True 857.500000 1303 93.997000 3831 5112 2 chr3D.!!$R2 1281
6 TraesCS5D01G211900 chr3B 84437818 84443910 6092 True 324.333333 344 95.794667 4505 5112 3 chr3B.!!$R1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 287 0.315886 ACTCACGCCGTACACAATGA 59.684 50.000 0.00 0.0 0.00 2.57 F
879 1321 0.390472 GAAGCCTCCTCTCCAACGTG 60.390 60.000 0.00 0.0 0.00 4.49 F
1734 2205 1.746470 GTATTTTAGTGGCGGCTGGT 58.254 50.000 11.43 0.0 0.00 4.00 F
1745 2216 2.367202 CGGCTGGTGGTCTATGGGT 61.367 63.158 0.00 0.0 0.00 4.51 F
3727 4275 2.017623 GCTCATCAAGTGCAGCTCCAT 61.018 52.381 0.00 0.0 36.75 3.41 F
5536 11594 0.611714 TTGCCTCTTCCGGTCCTAAC 59.388 55.000 0.00 0.0 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 2073 1.078848 CCCAAGAGAGCGACCCTTG 60.079 63.158 0.00 0.00 37.58 3.61 R
2872 3407 2.706339 AGCTAGCAAATGCAGTAGCT 57.294 45.000 18.83 18.24 44.86 3.32 R
3727 4275 5.592587 TTTGAGGGTTCCTTGGATTTAGA 57.407 39.130 0.00 0.00 31.76 2.10 R
3864 4418 6.024552 TGCAAATAACTCCCAAAGAATCAC 57.975 37.500 0.00 0.00 0.00 3.06 R
5593 11657 0.249398 GAGGTAACCGCAGACCACAT 59.751 55.000 0.00 0.00 38.27 3.21 R
7030 13141 0.322456 TTGCAAGCGTTGGCCTCTAT 60.322 50.000 3.32 0.00 41.24 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 2.264480 CGTCCTTCGCCATGGTCA 59.736 61.111 14.67 0.00 0.00 4.02
102 103 3.322318 TTCGCCATGGTCATCCGCA 62.322 57.895 14.67 0.00 36.30 5.69
169 170 2.806856 GAAGATGAGCAGTGCCGCG 61.807 63.158 12.58 0.00 36.85 6.46
230 232 1.916506 TTCCATGGACCAAAATCGCA 58.083 45.000 15.91 0.00 0.00 5.10
279 281 0.601576 AATTGCACTCACGCCGTACA 60.602 50.000 0.00 0.00 0.00 2.90
285 287 0.315886 ACTCACGCCGTACACAATGA 59.684 50.000 0.00 0.00 0.00 2.57
289 291 2.104253 CGCCGTACACAATGACCCC 61.104 63.158 0.00 0.00 0.00 4.95
293 295 1.065782 CCGTACACAATGACCCCATCA 60.066 52.381 0.00 0.00 43.13 3.07
307 309 2.943033 CCCCATCATACGAAACTGTTCC 59.057 50.000 0.00 0.00 0.00 3.62
371 374 1.271543 TGACACCTGAGCCTCCATTTG 60.272 52.381 0.00 0.00 0.00 2.32
374 377 1.000521 CCTGAGCCTCCATTTGCCA 60.001 57.895 0.00 0.00 0.00 4.92
379 382 1.137675 GAGCCTCCATTTGCCAAATCC 59.862 52.381 0.00 0.00 0.00 3.01
382 385 1.483415 CCTCCATTTGCCAAATCCCAG 59.517 52.381 0.00 0.00 0.00 4.45
400 403 1.014044 AGTAGCACATGCAACGACCG 61.014 55.000 6.64 0.00 45.16 4.79
408 411 1.729517 CATGCAACGACCGTGATTACA 59.270 47.619 0.00 0.00 0.00 2.41
409 412 1.424403 TGCAACGACCGTGATTACAG 58.576 50.000 0.00 0.00 0.00 2.74
434 437 2.151502 TGAGCCTGGAAACCAAAACA 57.848 45.000 0.00 0.00 30.80 2.83
449 452 4.141733 ACCAAAACACCCCTCTCATTTTTG 60.142 41.667 0.00 0.00 34.94 2.44
452 455 5.784578 AAACACCCCTCTCATTTTTGTAC 57.215 39.130 0.00 0.00 0.00 2.90
468 471 3.207474 TGTACGCTTACTCGAGAAACC 57.793 47.619 21.68 3.70 0.00 3.27
487 491 3.104512 ACCGATGGAGGTGTAGATTTCA 58.895 45.455 0.00 0.00 44.07 2.69
500 504 7.560991 AGGTGTAGATTTCATGGCATTTGATTA 59.439 33.333 0.00 0.00 0.00 1.75
562 566 8.973835 TTTTACAACAACAAGGTAGTTTCAAG 57.026 30.769 0.00 0.00 0.00 3.02
564 568 6.827586 ACAACAACAAGGTAGTTTCAAGAA 57.172 33.333 0.00 0.00 0.00 2.52
610 614 7.990541 TTGATTTTCAATATCTTTCATGGCG 57.009 32.000 0.00 0.00 30.26 5.69
612 616 4.979943 TTTCAATATCTTTCATGGCGCA 57.020 36.364 10.83 0.00 0.00 6.09
627 1013 3.556513 TGGCGCACTTAACAAATTTACG 58.443 40.909 10.83 0.00 0.00 3.18
630 1016 3.359580 GCGCACTTAACAAATTTACGGTG 59.640 43.478 0.30 0.00 0.00 4.94
631 1017 4.529446 CGCACTTAACAAATTTACGGTGT 58.471 39.130 0.00 0.00 0.00 4.16
632 1018 5.677936 CGCACTTAACAAATTTACGGTGTA 58.322 37.500 0.00 0.00 0.00 2.90
635 1021 6.463576 GCACTTAACAAATTTACGGTGTATCG 59.536 38.462 0.00 0.00 0.00 2.92
650 1045 5.503683 CGGTGTATCGTAACTCTCTTACTGG 60.504 48.000 0.00 0.00 0.00 4.00
651 1046 5.587844 GGTGTATCGTAACTCTCTTACTGGA 59.412 44.000 0.00 0.00 0.00 3.86
652 1047 6.238429 GGTGTATCGTAACTCTCTTACTGGAG 60.238 46.154 0.00 0.00 35.86 3.86
653 1048 6.315891 GTGTATCGTAACTCTCTTACTGGAGT 59.684 42.308 0.00 0.00 43.60 3.85
655 1050 7.710044 TGTATCGTAACTCTCTTACTGGAGTAG 59.290 40.741 0.00 0.00 41.28 2.57
657 1052 6.471146 TCGTAACTCTCTTACTGGAGTAGTT 58.529 40.000 0.00 0.00 41.28 2.24
660 1055 8.081025 CGTAACTCTCTTACTGGAGTAGTTTTT 58.919 37.037 0.00 0.00 41.28 1.94
704 1141 6.917533 AGAGCAGTTTGTTGGATGAAAATAG 58.082 36.000 0.00 0.00 0.00 1.73
753 1190 5.835113 TGGTGAGAGTTTTTCCTTTTGAG 57.165 39.130 0.00 0.00 0.00 3.02
754 1191 5.505780 TGGTGAGAGTTTTTCCTTTTGAGA 58.494 37.500 0.00 0.00 0.00 3.27
802 1239 1.536766 CCAAACGCACATCACTGACAT 59.463 47.619 0.00 0.00 0.00 3.06
844 1281 4.580995 CGTCTAATCAGTGTCCCTGTCTAT 59.419 45.833 0.00 0.00 42.19 1.98
845 1282 5.278071 CGTCTAATCAGTGTCCCTGTCTATC 60.278 48.000 0.00 0.00 42.19 2.08
846 1283 5.830991 GTCTAATCAGTGTCCCTGTCTATCT 59.169 44.000 0.00 0.00 42.19 1.98
847 1284 6.999272 GTCTAATCAGTGTCCCTGTCTATCTA 59.001 42.308 0.00 0.00 42.19 1.98
879 1321 0.390472 GAAGCCTCCTCTCCAACGTG 60.390 60.000 0.00 0.00 0.00 4.49
936 1379 2.811317 CAGAGAAGCACGGCCGTC 60.811 66.667 31.80 22.76 0.00 4.79
954 1402 5.403166 GGCCGTCTTAAAAATACAACAAACC 59.597 40.000 0.00 0.00 0.00 3.27
1590 2056 3.074390 ACTTGAATCCTGACCATGAACCA 59.926 43.478 0.00 0.00 0.00 3.67
1603 2073 3.191371 CCATGAACCAAAGTGTAGAAGCC 59.809 47.826 0.00 0.00 0.00 4.35
1734 2205 1.746470 GTATTTTAGTGGCGGCTGGT 58.254 50.000 11.43 0.00 0.00 4.00
1745 2216 2.367202 CGGCTGGTGGTCTATGGGT 61.367 63.158 0.00 0.00 0.00 4.51
1876 2369 3.126001 TGTTGGCTGGTAGAGAACAAG 57.874 47.619 0.00 0.00 31.51 3.16
1897 2390 5.643421 AGCCTTCTCTGGAATATGTGAAT 57.357 39.130 0.00 0.00 0.00 2.57
1907 2400 8.746052 TCTGGAATATGTGAATTTCCGTAATT 57.254 30.769 0.00 0.00 41.50 1.40
2813 3348 7.817418 AACATACCAAACACAAGTTACATCT 57.183 32.000 0.00 0.00 36.84 2.90
2815 3350 6.206634 ACATACCAAACACAAGTTACATCTGG 59.793 38.462 0.00 0.00 36.84 3.86
2872 3407 6.007936 ACTATTTGCATGACGTTGCTAAAA 57.992 33.333 13.05 6.92 43.18 1.52
3007 3550 4.993705 ACATGGTATGGGGTTATGTAGG 57.006 45.455 0.00 0.00 30.79 3.18
3107 3650 3.244735 TGCAGTGTGGTTACATGGTATGT 60.245 43.478 0.00 0.00 46.92 2.29
3119 3662 5.366482 ACATGGTATGTGGTTATGTAGCA 57.634 39.130 0.00 0.00 43.01 3.49
3292 3835 5.387113 ACAAATGCTCATATACCAAGGGA 57.613 39.130 0.00 0.00 0.00 4.20
3432 3976 3.912496 TGTGGAGTAGCATAGCAATGT 57.088 42.857 0.00 0.00 35.38 2.71
3556 4103 9.129209 GTCTATTGGAATTGTCTTAAAAGTTGC 57.871 33.333 0.00 0.00 0.00 4.17
3570 4117 8.691797 TCTTAAAAGTTGCAGGTGTTTCTATTT 58.308 29.630 0.00 0.00 0.00 1.40
3727 4275 2.017623 GCTCATCAAGTGCAGCTCCAT 61.018 52.381 0.00 0.00 36.75 3.41
3811 4365 9.542462 TTACTCACCACTAATGTCTATTTATGC 57.458 33.333 0.00 0.00 0.00 3.14
3820 4374 9.686683 ACTAATGTCTATTTATGCTCTTTTGGT 57.313 29.630 0.00 0.00 0.00 3.67
3864 4418 7.342194 CGTACCATATATCCAAAACTTTGTCG 58.658 38.462 1.76 0.00 36.45 4.35
4021 4578 8.958119 ATTAGAATGGCAGATTTTACGAAGTA 57.042 30.769 0.00 0.00 45.11 2.24
4059 4617 3.060230 CGACTCGACGCATTTTTGTCATA 59.940 43.478 0.00 0.00 34.78 2.15
4129 4695 7.715266 AAATATATACTACTCCCTCCGTTCC 57.285 40.000 0.00 0.00 0.00 3.62
4130 4696 6.655376 ATATATACTACTCCCTCCGTTCCT 57.345 41.667 0.00 0.00 0.00 3.36
4131 4697 7.761981 ATATATACTACTCCCTCCGTTCCTA 57.238 40.000 0.00 0.00 0.00 2.94
4132 4698 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
4133 4699 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4134 4700 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4135 4701 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4136 4702 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4137 4703 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4138 4704 7.477008 ACTACTCCCTCCGTTCCTAAATATAT 58.523 38.462 0.00 0.00 0.00 0.86
4139 4705 6.607004 ACTCCCTCCGTTCCTAAATATATG 57.393 41.667 0.00 0.00 0.00 1.78
4140 4706 6.320518 ACTCCCTCCGTTCCTAAATATATGA 58.679 40.000 0.00 0.00 0.00 2.15
4141 4707 6.210984 ACTCCCTCCGTTCCTAAATATATGAC 59.789 42.308 0.00 0.00 0.00 3.06
4142 4708 5.482878 TCCCTCCGTTCCTAAATATATGACC 59.517 44.000 0.00 0.00 0.00 4.02
4143 4709 5.484290 CCCTCCGTTCCTAAATATATGACCT 59.516 44.000 0.00 0.00 0.00 3.85
4144 4710 6.013639 CCCTCCGTTCCTAAATATATGACCTT 60.014 42.308 0.00 0.00 0.00 3.50
4145 4711 7.450903 CCTCCGTTCCTAAATATATGACCTTT 58.549 38.462 0.00 0.00 0.00 3.11
4146 4712 7.937394 CCTCCGTTCCTAAATATATGACCTTTT 59.063 37.037 0.00 0.00 0.00 2.27
4147 4713 9.991906 CTCCGTTCCTAAATATATGACCTTTTA 57.008 33.333 0.00 0.00 0.00 1.52
4148 4714 9.991906 TCCGTTCCTAAATATATGACCTTTTAG 57.008 33.333 0.00 0.00 33.47 1.85
4149 4715 9.991906 CCGTTCCTAAATATATGACCTTTTAGA 57.008 33.333 0.00 0.00 34.90 2.10
4162 4728 8.930846 ATGACCTTTTAGAGATTCCAATATGG 57.069 34.615 0.00 0.00 39.43 2.74
4163 4729 8.101309 TGACCTTTTAGAGATTCCAATATGGA 57.899 34.615 0.00 0.00 46.61 3.41
4176 4742 5.554070 TCCAATATGGACTACATGCAGATG 58.446 41.667 0.00 0.00 42.67 2.90
4185 4751 8.056407 TGGACTACATGCAGATGTATATAGAC 57.944 38.462 0.00 0.00 42.87 2.59
4220 4786 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
4221 4787 7.033791 GTGTAGATTCACTCATTTTACTCCGA 58.966 38.462 0.00 0.00 35.68 4.55
4237 4803 7.591421 TTACTCCGAATGTAGTCCATATTGA 57.409 36.000 0.00 0.00 31.97 2.57
4276 4842 6.842807 TCTTATATTTAGGAACGGAGGGAGTT 59.157 38.462 0.00 0.00 34.07 3.01
4400 4967 2.031012 TCTCAAGCACCAGCCACG 59.969 61.111 0.00 0.00 43.56 4.94
4692 5267 7.385478 GGAGAGTCTCAAAAGGTTGTTAGTAAG 59.615 40.741 21.53 0.00 36.07 2.34
4700 5275 7.389607 TCAAAAGGTTGTTAGTAAGTGATAGCC 59.610 37.037 0.00 0.00 36.07 3.93
4792 7018 7.868792 AGATAACCCTATCCTTACCTTTACC 57.131 40.000 0.00 0.00 35.42 2.85
4797 7023 2.591571 ATCCTTACCTTTACCGACGC 57.408 50.000 0.00 0.00 0.00 5.19
5029 11087 1.293924 CTTATGGTCAGGCTGCTTCG 58.706 55.000 10.34 0.00 0.00 3.79
5211 11269 6.697641 TCTCCCTTAGTTTGGTTATGACTT 57.302 37.500 0.00 0.00 0.00 3.01
5378 11436 9.840427 AACTGCATGTTTTACACAACTTATATC 57.160 29.630 0.00 0.00 39.50 1.63
5536 11594 0.611714 TTGCCTCTTCCGGTCCTAAC 59.388 55.000 0.00 0.00 0.00 2.34
5577 11641 2.242708 TCCCTCAAGTACTCTCTCCCTC 59.757 54.545 0.00 0.00 0.00 4.30
5578 11642 2.243736 CCCTCAAGTACTCTCTCCCTCT 59.756 54.545 0.00 0.00 0.00 3.69
5579 11643 3.551846 CCTCAAGTACTCTCTCCCTCTC 58.448 54.545 0.00 0.00 0.00 3.20
5580 11644 3.202151 CCTCAAGTACTCTCTCCCTCTCT 59.798 52.174 0.00 0.00 0.00 3.10
5590 11654 1.010793 TCTCCCTCTCTCTCTCTCCCT 59.989 57.143 0.00 0.00 0.00 4.20
5593 11657 2.251605 TCCCTCTCTCTCTCTCCCTCTA 59.748 54.545 0.00 0.00 0.00 2.43
5781 11845 8.862325 TCAAATCTTACAGGTACATTTCATGT 57.138 30.769 0.00 0.00 46.92 3.21
5782 11846 9.295825 TCAAATCTTACAGGTACATTTCATGTT 57.704 29.630 0.00 0.00 41.63 2.71
5783 11847 9.345517 CAAATCTTACAGGTACATTTCATGTTG 57.654 33.333 0.00 0.00 41.63 3.33
5784 11848 7.630242 ATCTTACAGGTACATTTCATGTTGG 57.370 36.000 0.00 0.00 41.63 3.77
5785 11849 5.414454 TCTTACAGGTACATTTCATGTTGGC 59.586 40.000 0.00 0.00 41.63 4.52
5807 11871 3.281727 TGTTGCTCTTTCTCCTGTGTT 57.718 42.857 0.00 0.00 0.00 3.32
5842 11907 6.041637 ACTTGTGACAGTTGACTAACAGGATA 59.958 38.462 8.74 0.00 39.30 2.59
6033 12100 2.728690 TGCATGTTGCTTGACAATCC 57.271 45.000 0.75 0.00 45.31 3.01
6057 12124 5.396772 CCATACTTGCTGAACCAGGAATCTA 60.397 44.000 0.00 0.00 40.71 1.98
6189 12256 1.948834 CCGCATCTGCATTTCCATGTA 59.051 47.619 2.72 0.00 42.21 2.29
6190 12257 2.287188 CCGCATCTGCATTTCCATGTAC 60.287 50.000 2.72 0.00 42.21 2.90
6191 12258 2.615447 CGCATCTGCATTTCCATGTACT 59.385 45.455 2.72 0.00 42.21 2.73
6192 12259 3.303593 CGCATCTGCATTTCCATGTACTC 60.304 47.826 2.72 0.00 42.21 2.59
6193 12260 3.004106 GCATCTGCATTTCCATGTACTCC 59.996 47.826 0.00 0.00 41.59 3.85
6194 12261 3.281727 TCTGCATTTCCATGTACTCCC 57.718 47.619 0.00 0.00 32.28 4.30
6195 12262 2.846206 TCTGCATTTCCATGTACTCCCT 59.154 45.455 0.00 0.00 32.28 4.20
6196 12263 3.118261 TCTGCATTTCCATGTACTCCCTC 60.118 47.826 0.00 0.00 32.28 4.30
6197 12264 2.092429 TGCATTTCCATGTACTCCCTCC 60.092 50.000 0.00 0.00 32.28 4.30
6198 12265 2.838736 CATTTCCATGTACTCCCTCCG 58.161 52.381 0.00 0.00 0.00 4.63
6199 12266 1.946984 TTTCCATGTACTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
6200 12267 1.481871 TTCCATGTACTCCCTCCGTC 58.518 55.000 0.00 0.00 0.00 4.79
6201 12268 0.396695 TCCATGTACTCCCTCCGTCC 60.397 60.000 0.00 0.00 0.00 4.79
6202 12269 1.734137 CATGTACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
6203 12270 0.750546 CATGTACTCCCTCCGTCCGA 60.751 60.000 0.00 0.00 0.00 4.55
6204 12271 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
6205 12272 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
6206 12273 1.109609 GTACTCCCTCCGTCCGAAAT 58.890 55.000 0.00 0.00 0.00 2.17
6207 12274 1.479730 GTACTCCCTCCGTCCGAAATT 59.520 52.381 0.00 0.00 0.00 1.82
6208 12275 1.856629 ACTCCCTCCGTCCGAAATTA 58.143 50.000 0.00 0.00 0.00 1.40
6209 12276 1.479730 ACTCCCTCCGTCCGAAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
6210 12277 1.755380 CTCCCTCCGTCCGAAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
6211 12278 2.167900 CTCCCTCCGTCCGAAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
6212 12279 2.093869 TCCCTCCGTCCGAAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6213 12280 2.354403 CCCTCCGTCCGAAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6214 12281 3.332034 CCTCCGTCCGAAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
6215 12282 3.124636 CCTCCGTCCGAAATTACTTGTTG 59.875 47.826 0.00 0.00 0.00 3.33
6216 12283 2.481185 TCCGTCCGAAATTACTTGTTGC 59.519 45.455 0.00 0.00 0.00 4.17
6217 12284 2.492001 CGTCCGAAATTACTTGTTGCG 58.508 47.619 0.00 0.00 0.00 4.85
6218 12285 2.723618 CGTCCGAAATTACTTGTTGCGG 60.724 50.000 0.00 0.00 38.68 5.69
6219 12286 2.481185 GTCCGAAATTACTTGTTGCGGA 59.519 45.455 3.94 3.94 43.28 5.54
6220 12287 3.058777 GTCCGAAATTACTTGTTGCGGAA 60.059 43.478 9.38 0.00 46.36 4.30
6221 12288 3.564644 TCCGAAATTACTTGTTGCGGAAA 59.435 39.130 5.54 0.00 42.65 3.13
6222 12289 4.216687 TCCGAAATTACTTGTTGCGGAAAT 59.783 37.500 5.54 0.00 42.65 2.17
6223 12290 4.323336 CCGAAATTACTTGTTGCGGAAATG 59.677 41.667 0.00 0.00 39.62 2.32
6224 12291 4.323336 CGAAATTACTTGTTGCGGAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
6225 12292 5.461032 AAATTACTTGTTGCGGAAATGGA 57.539 34.783 0.00 0.00 0.00 3.41
6226 12293 5.659440 AATTACTTGTTGCGGAAATGGAT 57.341 34.783 0.00 0.00 0.00 3.41
6227 12294 4.433186 TTACTTGTTGCGGAAATGGATG 57.567 40.909 0.00 0.00 0.00 3.51
6228 12295 2.238521 ACTTGTTGCGGAAATGGATGT 58.761 42.857 0.00 0.00 0.00 3.06
6229 12296 3.417101 ACTTGTTGCGGAAATGGATGTA 58.583 40.909 0.00 0.00 0.00 2.29
6230 12297 4.016444 ACTTGTTGCGGAAATGGATGTAT 58.984 39.130 0.00 0.00 0.00 2.29
6231 12298 4.096382 ACTTGTTGCGGAAATGGATGTATC 59.904 41.667 0.00 0.00 0.00 2.24
6232 12299 3.884895 TGTTGCGGAAATGGATGTATCT 58.115 40.909 0.00 0.00 0.00 1.98
6233 12300 5.029807 TGTTGCGGAAATGGATGTATCTA 57.970 39.130 0.00 0.00 0.00 1.98
6234 12301 5.056480 TGTTGCGGAAATGGATGTATCTAG 58.944 41.667 0.00 0.00 0.00 2.43
6235 12302 5.163353 TGTTGCGGAAATGGATGTATCTAGA 60.163 40.000 0.00 0.00 0.00 2.43
6236 12303 4.883083 TGCGGAAATGGATGTATCTAGAC 58.117 43.478 0.00 0.00 0.00 2.59
6237 12304 3.921021 GCGGAAATGGATGTATCTAGACG 59.079 47.826 0.00 0.00 0.00 4.18
6238 12305 4.558898 GCGGAAATGGATGTATCTAGACGT 60.559 45.833 0.00 0.00 0.00 4.34
6239 12306 5.335426 GCGGAAATGGATGTATCTAGACGTA 60.335 44.000 0.00 0.00 0.00 3.57
6240 12307 6.625300 GCGGAAATGGATGTATCTAGACGTAT 60.625 42.308 0.00 0.00 0.00 3.06
6241 12308 7.313646 CGGAAATGGATGTATCTAGACGTATT 58.686 38.462 0.00 0.00 0.00 1.89
6242 12309 7.813148 CGGAAATGGATGTATCTAGACGTATTT 59.187 37.037 0.00 0.00 0.00 1.40
6243 12310 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
6276 12343 8.796475 AGATACATCCATTTTTATCCAATTCCG 58.204 33.333 0.00 0.00 0.00 4.30
6277 12344 5.600696 ACATCCATTTTTATCCAATTCCGC 58.399 37.500 0.00 0.00 0.00 5.54
6278 12345 4.300189 TCCATTTTTATCCAATTCCGCG 57.700 40.909 0.00 0.00 0.00 6.46
6279 12346 3.948473 TCCATTTTTATCCAATTCCGCGA 59.052 39.130 8.23 0.00 0.00 5.87
6280 12347 4.041723 CCATTTTTATCCAATTCCGCGAC 58.958 43.478 8.23 0.00 0.00 5.19
6281 12348 4.439426 CCATTTTTATCCAATTCCGCGACA 60.439 41.667 8.23 0.00 0.00 4.35
6282 12349 4.768130 TTTTTATCCAATTCCGCGACAA 57.232 36.364 8.23 0.00 0.00 3.18
6283 12350 4.349663 TTTTATCCAATTCCGCGACAAG 57.650 40.909 8.23 0.00 0.00 3.16
6284 12351 2.684001 TATCCAATTCCGCGACAAGT 57.316 45.000 8.23 0.00 0.00 3.16
6285 12352 2.684001 ATCCAATTCCGCGACAAGTA 57.316 45.000 8.23 0.00 0.00 2.24
6286 12353 2.459060 TCCAATTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
6287 12354 2.980568 TCCAATTCCGCGACAAGTAAT 58.019 42.857 8.23 0.00 0.00 1.89
6288 12355 3.340034 TCCAATTCCGCGACAAGTAATT 58.660 40.909 8.23 0.77 0.00 1.40
6289 12356 3.372822 TCCAATTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
6290 12357 3.486875 CCAATTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
6291 12358 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
6292 12359 0.458889 TCCGCGACAAGTAATTCCGG 60.459 55.000 8.23 0.00 35.83 5.14
6293 12360 0.458889 CCGCGACAAGTAATTCCGGA 60.459 55.000 8.23 0.00 36.55 5.14
6294 12361 0.643820 CGCGACAAGTAATTCCGGAC 59.356 55.000 1.83 0.00 0.00 4.79
6295 12362 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
6296 12363 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
6297 12364 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
6298 12365 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
6299 12366 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6300 12367 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
6301 12368 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
6302 12369 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
6303 12370 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
6335 12402 3.056678 TGCTTATTTGTGGCACCATGAAG 60.057 43.478 16.26 13.90 0.00 3.02
6837 12906 1.970917 CTGTGCGATTGAGCCCGTTC 61.971 60.000 0.00 0.00 36.02 3.95
6838 12907 2.435938 TGCGATTGAGCCCGTTCC 60.436 61.111 0.00 0.00 36.02 3.62
6839 12908 2.125106 GCGATTGAGCCCGTTCCT 60.125 61.111 0.00 0.00 0.00 3.36
6840 12909 2.464459 GCGATTGAGCCCGTTCCTG 61.464 63.158 0.00 0.00 0.00 3.86
6841 12910 1.079127 CGATTGAGCCCGTTCCTGT 60.079 57.895 0.00 0.00 0.00 4.00
6842 12911 0.673644 CGATTGAGCCCGTTCCTGTT 60.674 55.000 0.00 0.00 0.00 3.16
6843 12912 0.804989 GATTGAGCCCGTTCCTGTTG 59.195 55.000 0.00 0.00 0.00 3.33
6844 12913 0.609131 ATTGAGCCCGTTCCTGTTGG 60.609 55.000 0.00 0.00 0.00 3.77
6865 12934 0.464735 TTGTTGCCGTTACCTGCAGT 60.465 50.000 13.81 3.45 38.95 4.40
6918 13028 5.275788 CGCTTTGATCGCTAGTGTTAGTTAC 60.276 44.000 2.66 0.00 0.00 2.50
6931 13041 5.646467 TGTTAGTTACGACTGACAAAAGC 57.354 39.130 2.21 0.00 45.85 3.51
6932 13042 5.110598 TGTTAGTTACGACTGACAAAAGCA 58.889 37.500 2.21 0.00 45.85 3.91
7095 13210 5.875930 ACAAAACAAGCTTGTAGTGTGTAC 58.124 37.500 31.80 0.00 41.31 2.90
7106 13221 4.650985 TGTAGTGTGTACTAACGTATGCG 58.349 43.478 0.19 0.19 40.89 4.73
7157 13324 1.192146 TTTCCGGAGAGTGGGGTCTG 61.192 60.000 3.34 0.00 0.00 3.51
7189 13358 3.430862 CCACCGTTGTCATGCCCG 61.431 66.667 0.00 0.00 0.00 6.13
7192 13361 2.358125 CCGTTGTCATGCCCGTCA 60.358 61.111 0.00 0.00 0.00 4.35
7285 13454 1.167851 GCAGAAATGCCACACAGCTA 58.832 50.000 0.00 0.00 0.00 3.32
7339 13508 0.937699 TCAACCGCGACGTTTGAGAG 60.938 55.000 8.23 0.00 0.00 3.20
7357 13526 8.542953 GTTTGAGAGCTTTTATTGTTGGAAAAG 58.457 33.333 0.00 3.33 42.84 2.27
7431 13615 2.362375 ATTTGGCGCGGGTGGAAT 60.362 55.556 8.83 0.00 0.00 3.01
7456 13645 1.424493 CTCTGGCTCAAATCCGTCGC 61.424 60.000 0.00 0.00 0.00 5.19
7476 13665 3.063084 GTCTCCGTCGAGCCACCT 61.063 66.667 0.00 0.00 35.94 4.00
7539 13771 1.482621 CGATCCACCGCATCTGTTCG 61.483 60.000 0.00 0.00 0.00 3.95
7549 13790 0.459899 CATCTGTTCGTCGATGGGGA 59.540 55.000 4.48 0.00 34.75 4.81
7569 13810 4.070009 GGACCGTCTTCCAAAAATACAGT 58.930 43.478 0.00 0.00 35.49 3.55
7571 13812 5.878669 GGACCGTCTTCCAAAAATACAGTAT 59.121 40.000 0.00 0.00 35.49 2.12
7573 13814 5.878669 ACCGTCTTCCAAAAATACAGTATCC 59.121 40.000 0.00 0.00 0.00 2.59
7597 14207 3.908103 TGTAAGGTAACCTCCAGAGCTTT 59.092 43.478 0.00 0.00 33.28 3.51
7612 14222 3.525199 AGAGCTTTCATACCATGGTTCCT 59.475 43.478 25.38 5.53 0.00 3.36
7646 14256 3.735746 CGTATATCAGCGAGCATGTTCAA 59.264 43.478 10.36 0.00 0.00 2.69
7650 14260 1.089112 CAGCGAGCATGTTCAATCCA 58.911 50.000 10.36 0.00 0.00 3.41
7673 14284 2.011122 TCTCCCGTTTCTCTTCACCT 57.989 50.000 0.00 0.00 0.00 4.00
7694 14305 1.519455 CCGTTCCCATGCTCGTCTC 60.519 63.158 0.00 0.00 0.00 3.36
7695 14306 1.513158 CGTTCCCATGCTCGTCTCT 59.487 57.895 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.217626 ACCTGAGTTTCTCAAGCTTTGG 58.782 45.455 0.00 0.00 40.18 3.28
4 5 4.907879 AACCTGAGTTTCTCAAGCTTTG 57.092 40.909 0.00 0.00 40.18 2.77
5 6 4.098501 CCAAACCTGAGTTTCTCAAGCTTT 59.901 41.667 0.00 0.00 44.47 3.51
7 8 3.217626 CCAAACCTGAGTTTCTCAAGCT 58.782 45.455 1.22 0.00 44.47 3.74
8 9 2.294512 CCCAAACCTGAGTTTCTCAAGC 59.705 50.000 1.22 0.00 44.47 4.01
11 12 2.131854 TCCCCAAACCTGAGTTTCTCA 58.868 47.619 0.00 0.00 44.47 3.27
12 13 2.951229 TCCCCAAACCTGAGTTTCTC 57.049 50.000 0.00 0.00 44.47 2.87
13 14 3.500343 CAATCCCCAAACCTGAGTTTCT 58.500 45.455 0.00 0.00 44.47 2.52
85 86 1.753368 TATGCGGATGACCATGGCGA 61.753 55.000 13.04 0.00 35.59 5.54
96 97 0.250727 CCGGGGTGAATTATGCGGAT 60.251 55.000 0.00 0.00 0.00 4.18
172 173 1.736696 CGAAGACATGGCCCAATTTGC 60.737 52.381 0.00 0.00 0.00 3.68
177 179 2.115427 TCTATCGAAGACATGGCCCAA 58.885 47.619 0.00 0.00 42.51 4.12
187 189 5.973899 AGCAGCATCTAATCTATCGAAGA 57.026 39.130 0.00 0.00 45.75 2.87
199 201 3.282021 GTCCATGGAAAAGCAGCATCTA 58.718 45.455 18.20 0.00 0.00 1.98
201 203 1.135721 GGTCCATGGAAAAGCAGCATC 59.864 52.381 18.20 0.00 0.00 3.91
205 207 3.749665 TTTTGGTCCATGGAAAAGCAG 57.250 42.857 18.20 0.00 0.00 4.24
210 212 2.242926 TGCGATTTTGGTCCATGGAAA 58.757 42.857 18.20 7.62 0.00 3.13
243 245 6.071952 AGTGCAATTCAATTTGGATAGACGTT 60.072 34.615 0.00 0.00 29.37 3.99
244 246 5.415701 AGTGCAATTCAATTTGGATAGACGT 59.584 36.000 0.00 0.00 29.37 4.34
245 247 5.883661 AGTGCAATTCAATTTGGATAGACG 58.116 37.500 0.00 0.00 29.37 4.18
246 248 6.749118 GTGAGTGCAATTCAATTTGGATAGAC 59.251 38.462 3.91 0.00 33.03 2.59
247 249 6.403527 CGTGAGTGCAATTCAATTTGGATAGA 60.404 38.462 3.91 0.00 33.03 1.98
248 250 5.740569 CGTGAGTGCAATTCAATTTGGATAG 59.259 40.000 3.91 0.00 33.03 2.08
249 251 5.639757 CGTGAGTGCAATTCAATTTGGATA 58.360 37.500 3.91 0.00 33.03 2.59
250 252 4.487948 CGTGAGTGCAATTCAATTTGGAT 58.512 39.130 3.91 0.00 33.03 3.41
251 253 3.856638 GCGTGAGTGCAATTCAATTTGGA 60.857 43.478 3.91 0.00 33.03 3.53
253 255 2.409378 GGCGTGAGTGCAATTCAATTTG 59.591 45.455 3.91 0.00 33.03 2.32
279 281 3.924114 TTCGTATGATGGGGTCATTGT 57.076 42.857 0.00 0.00 45.25 2.71
285 287 3.606687 GAACAGTTTCGTATGATGGGGT 58.393 45.455 0.00 0.00 0.00 4.95
289 291 3.374058 GGTGGGAACAGTTTCGTATGATG 59.626 47.826 0.00 0.00 44.46 3.07
293 295 3.495434 TTGGTGGGAACAGTTTCGTAT 57.505 42.857 0.00 0.00 44.46 3.06
297 299 7.556275 TGAAGATATATTGGTGGGAACAGTTTC 59.444 37.037 0.00 0.00 44.46 2.78
298 300 7.410174 TGAAGATATATTGGTGGGAACAGTTT 58.590 34.615 0.00 0.00 44.46 2.66
340 342 2.103094 CTCAGGTGTCAGTTCAGTTCCA 59.897 50.000 0.00 0.00 0.00 3.53
346 348 0.681733 GAGGCTCAGGTGTCAGTTCA 59.318 55.000 10.25 0.00 0.00 3.18
347 349 0.036858 GGAGGCTCAGGTGTCAGTTC 60.037 60.000 17.69 0.00 0.00 3.01
357 360 1.259609 TTTGGCAAATGGAGGCTCAG 58.740 50.000 17.69 1.47 0.00 3.35
371 374 1.406539 CATGTGCTACTGGGATTTGGC 59.593 52.381 0.00 0.00 0.00 4.52
374 377 2.493278 GTTGCATGTGCTACTGGGATTT 59.507 45.455 11.40 0.00 42.12 2.17
379 382 0.443869 GTCGTTGCATGTGCTACTGG 59.556 55.000 15.41 3.82 42.96 4.00
382 385 1.289109 ACGGTCGTTGCATGTGCTAC 61.289 55.000 9.09 9.09 42.00 3.58
400 403 4.999950 CCAGGCTCATATTCCTGTAATCAC 59.000 45.833 12.11 0.00 46.43 3.06
408 411 2.852449 TGGTTTCCAGGCTCATATTCCT 59.148 45.455 0.00 0.00 0.00 3.36
409 412 3.297134 TGGTTTCCAGGCTCATATTCC 57.703 47.619 0.00 0.00 0.00 3.01
424 427 2.838637 TGAGAGGGGTGTTTTGGTTT 57.161 45.000 0.00 0.00 0.00 3.27
434 437 2.039879 AGCGTACAAAAATGAGAGGGGT 59.960 45.455 0.00 0.00 0.00 4.95
449 452 2.159653 TCGGTTTCTCGAGTAAGCGTAC 60.160 50.000 37.35 16.19 43.39 3.67
452 455 1.846782 CATCGGTTTCTCGAGTAAGCG 59.153 52.381 35.48 35.48 43.96 4.68
468 471 4.060900 CCATGAAATCTACACCTCCATCG 58.939 47.826 0.00 0.00 0.00 3.84
599 603 2.499197 TGTTAAGTGCGCCATGAAAGA 58.501 42.857 4.18 0.00 0.00 2.52
605 609 4.162812 CGTAAATTTGTTAAGTGCGCCAT 58.837 39.130 4.18 0.00 0.00 4.40
610 614 6.463576 CGATACACCGTAAATTTGTTAAGTGC 59.536 38.462 0.00 0.00 0.00 4.40
612 616 7.656707 ACGATACACCGTAAATTTGTTAAGT 57.343 32.000 0.00 0.00 41.44 2.24
627 1013 5.587844 TCCAGTAAGAGAGTTACGATACACC 59.412 44.000 0.00 0.00 0.00 4.16
630 1016 6.923928 ACTCCAGTAAGAGAGTTACGATAC 57.076 41.667 0.00 0.00 40.43 2.24
631 1017 7.790027 ACTACTCCAGTAAGAGAGTTACGATA 58.210 38.462 0.00 0.00 40.43 2.92
632 1018 6.652053 ACTACTCCAGTAAGAGAGTTACGAT 58.348 40.000 0.00 0.00 40.43 3.73
660 1055 9.134734 CTGCTCTTTACTTGTGTGTTTTAAAAA 57.865 29.630 1.31 0.00 0.00 1.94
661 1056 8.301002 ACTGCTCTTTACTTGTGTGTTTTAAAA 58.699 29.630 0.00 0.00 0.00 1.52
663 1058 7.385778 ACTGCTCTTTACTTGTGTGTTTTAA 57.614 32.000 0.00 0.00 0.00 1.52
669 1106 5.235305 ACAAACTGCTCTTTACTTGTGTG 57.765 39.130 0.00 0.00 0.00 3.82
678 1115 5.596836 TTTCATCCAACAAACTGCTCTTT 57.403 34.783 0.00 0.00 0.00 2.52
681 1118 5.574443 GCTATTTTCATCCAACAAACTGCTC 59.426 40.000 0.00 0.00 0.00 4.26
683 1120 5.229423 TGCTATTTTCATCCAACAAACTGC 58.771 37.500 0.00 0.00 0.00 4.40
684 1121 8.984891 TTATGCTATTTTCATCCAACAAACTG 57.015 30.769 0.00 0.00 0.00 3.16
685 1122 7.761249 GCTTATGCTATTTTCATCCAACAAACT 59.239 33.333 0.00 0.00 36.03 2.66
753 1190 1.935933 AACACAGACAACTCCGTGTC 58.064 50.000 0.00 0.00 46.90 3.67
754 1191 2.006888 CAAACACAGACAACTCCGTGT 58.993 47.619 0.00 0.00 44.17 4.49
802 1239 1.750332 CGGGGGCATCTTGCTGATTAA 60.750 52.381 0.00 0.00 44.28 1.40
811 1248 1.417890 CTGATTAGACGGGGGCATCTT 59.582 52.381 0.00 0.00 0.00 2.40
879 1321 6.237728 GGTGTCTTGATCGGTTTTTGTTTTTC 60.238 38.462 0.00 0.00 0.00 2.29
936 1379 7.151976 CCCCTCTGGTTTGTTGTATTTTTAAG 58.848 38.462 0.00 0.00 0.00 1.85
1079 1530 1.749638 GAGTTCGAGAGGAGGCGGA 60.750 63.158 0.00 0.00 0.00 5.54
1082 1533 1.430228 GACGAGTTCGAGAGGAGGC 59.570 63.158 8.72 0.00 43.02 4.70
1329 1793 3.047877 CCCGCGAACTCCACCAAC 61.048 66.667 8.23 0.00 0.00 3.77
1407 1872 1.452145 GCAGAGCCCAACCAAACGAA 61.452 55.000 0.00 0.00 0.00 3.85
1564 2029 1.909700 TGGTCAGGATTCAAGTTGGC 58.090 50.000 2.34 0.00 0.00 4.52
1590 2056 2.550208 CGACCCTTGGCTTCTACACTTT 60.550 50.000 0.00 0.00 0.00 2.66
1603 2073 1.078848 CCCAAGAGAGCGACCCTTG 60.079 63.158 0.00 0.00 37.58 3.61
1734 2205 3.111484 TGACAGCATAACCCATAGACCA 58.889 45.455 0.00 0.00 0.00 4.02
1745 2216 5.343307 TCTCTGCAGTTATGACAGCATAA 57.657 39.130 14.67 0.05 45.53 1.90
1876 2369 6.238869 GGAAATTCACATATTCCAGAGAAGGC 60.239 42.308 0.00 0.00 41.80 4.35
1897 2390 7.546667 GTCACATAGTCCTAACAATTACGGAAA 59.453 37.037 0.00 0.00 0.00 3.13
1907 2400 4.082408 CACCTTCGTCACATAGTCCTAACA 60.082 45.833 0.00 0.00 0.00 2.41
2790 3302 6.206634 CCAGATGTAACTTGTGTTTGGTATGT 59.793 38.462 0.00 0.00 37.59 2.29
2813 3348 7.865385 GTGTATCTGTATTTGAAAACAAAGCCA 59.135 33.333 0.00 0.00 0.00 4.75
2815 3350 7.865385 TGGTGTATCTGTATTTGAAAACAAAGC 59.135 33.333 0.00 0.00 0.00 3.51
2872 3407 2.706339 AGCTAGCAAATGCAGTAGCT 57.294 45.000 18.83 18.24 44.86 3.32
3107 3650 8.710239 TGGTAGAATCTAAATGCTACATAACCA 58.290 33.333 6.03 0.00 43.48 3.67
3119 3662 8.757982 AATTCACATGCTGGTAGAATCTAAAT 57.242 30.769 0.00 0.00 0.00 1.40
3292 3835 5.711036 ACGTAGTCTCATCCTTAAGAACTGT 59.289 40.000 3.36 0.00 29.74 3.55
3556 4103 7.560368 ACTAGGATCAGAAATAGAAACACCTG 58.440 38.462 0.00 0.00 0.00 4.00
3570 4117 8.770828 CGAAGTTTAACAAAAACTAGGATCAGA 58.229 33.333 3.74 0.00 39.36 3.27
3727 4275 5.592587 TTTGAGGGTTCCTTGGATTTAGA 57.407 39.130 0.00 0.00 31.76 2.10
3864 4418 6.024552 TGCAAATAACTCCCAAAGAATCAC 57.975 37.500 0.00 0.00 0.00 3.06
3915 4469 9.787435 ACTTAAACTGTACCATCATAGTTTCAA 57.213 29.630 9.32 4.26 41.11 2.69
4021 4578 2.164624 GAGTCGGAGCTCATAGTTGTGT 59.835 50.000 17.19 0.00 35.67 3.72
4118 4684 5.482878 GGTCATATATTTAGGAACGGAGGGA 59.517 44.000 0.00 0.00 0.00 4.20
4119 4685 5.484290 AGGTCATATATTTAGGAACGGAGGG 59.516 44.000 0.00 0.00 31.15 4.30
4122 4688 9.991906 CTAAAAGGTCATATATTTAGGAACGGA 57.008 33.333 0.00 0.00 31.15 4.69
4123 4689 9.991906 TCTAAAAGGTCATATATTTAGGAACGG 57.008 33.333 0.00 0.00 36.48 4.44
4137 4703 8.727149 TCCATATTGGAATCTCTAAAAGGTCAT 58.273 33.333 0.00 0.00 45.00 3.06
4138 4704 8.101309 TCCATATTGGAATCTCTAAAAGGTCA 57.899 34.615 0.00 0.00 45.00 4.02
4151 4717 7.693540 ACATCTGCATGTAGTCCATATTGGAAT 60.694 37.037 10.80 1.81 44.32 3.01
4152 4718 6.409579 ACATCTGCATGTAGTCCATATTGGAA 60.410 38.462 10.80 0.00 44.32 3.53
4153 4719 5.072193 ACATCTGCATGTAGTCCATATTGGA 59.928 40.000 10.80 0.00 42.21 3.53
4154 4720 5.311265 ACATCTGCATGTAGTCCATATTGG 58.689 41.667 10.80 0.00 41.81 3.16
4155 4721 9.828039 ATATACATCTGCATGTAGTCCATATTG 57.172 33.333 10.80 2.13 46.52 1.90
4158 4724 9.920946 TCTATATACATCTGCATGTAGTCCATA 57.079 33.333 10.80 5.45 46.52 2.74
4159 4725 8.690884 GTCTATATACATCTGCATGTAGTCCAT 58.309 37.037 10.80 3.56 46.52 3.41
4160 4726 7.669722 TGTCTATATACATCTGCATGTAGTCCA 59.330 37.037 10.80 0.00 46.52 4.02
4161 4727 8.056407 TGTCTATATACATCTGCATGTAGTCC 57.944 38.462 10.80 0.00 46.52 3.85
4196 4762 7.033791 TCGGAGTAAAATGAGTGAATCTACAC 58.966 38.462 0.00 0.00 40.60 2.90
4197 4763 7.165460 TCGGAGTAAAATGAGTGAATCTACA 57.835 36.000 0.00 0.00 0.00 2.74
4198 4764 8.543774 CATTCGGAGTAAAATGAGTGAATCTAC 58.456 37.037 0.00 0.00 35.35 2.59
4199 4765 8.258007 ACATTCGGAGTAAAATGAGTGAATCTA 58.742 33.333 2.36 0.00 36.57 1.98
4200 4766 7.106239 ACATTCGGAGTAAAATGAGTGAATCT 58.894 34.615 2.36 0.00 36.57 2.40
4201 4767 7.308782 ACATTCGGAGTAAAATGAGTGAATC 57.691 36.000 2.36 0.00 36.57 2.52
4202 4768 8.041323 ACTACATTCGGAGTAAAATGAGTGAAT 58.959 33.333 2.36 0.00 36.57 2.57
4203 4769 7.383687 ACTACATTCGGAGTAAAATGAGTGAA 58.616 34.615 2.36 0.00 36.57 3.18
4204 4770 6.931838 ACTACATTCGGAGTAAAATGAGTGA 58.068 36.000 2.36 0.00 36.57 3.41
4205 4771 6.255887 GGACTACATTCGGAGTAAAATGAGTG 59.744 42.308 2.36 0.00 36.57 3.51
4206 4772 6.070995 TGGACTACATTCGGAGTAAAATGAGT 60.071 38.462 2.36 2.26 36.57 3.41
4207 4773 6.338146 TGGACTACATTCGGAGTAAAATGAG 58.662 40.000 2.36 0.00 36.57 2.90
4208 4774 6.288941 TGGACTACATTCGGAGTAAAATGA 57.711 37.500 2.36 0.00 36.57 2.57
4209 4775 8.833231 ATATGGACTACATTCGGAGTAAAATG 57.167 34.615 0.00 0.00 41.03 2.32
4210 4776 9.273016 CAATATGGACTACATTCGGAGTAAAAT 57.727 33.333 0.00 0.00 41.03 1.82
4211 4777 8.479689 TCAATATGGACTACATTCGGAGTAAAA 58.520 33.333 0.00 0.00 41.03 1.52
4212 4778 8.014070 TCAATATGGACTACATTCGGAGTAAA 57.986 34.615 0.00 0.00 41.03 2.01
4213 4779 7.591421 TCAATATGGACTACATTCGGAGTAA 57.409 36.000 0.00 0.00 41.03 2.24
4214 4780 7.591421 TTCAATATGGACTACATTCGGAGTA 57.409 36.000 0.00 0.00 41.03 2.59
4215 4781 6.479972 TTCAATATGGACTACATTCGGAGT 57.520 37.500 0.00 0.00 41.03 3.85
4216 4782 7.875041 AGATTTCAATATGGACTACATTCGGAG 59.125 37.037 0.00 0.00 41.03 4.63
4217 4783 7.735917 AGATTTCAATATGGACTACATTCGGA 58.264 34.615 0.00 0.00 41.03 4.55
4218 4784 7.875041 AGAGATTTCAATATGGACTACATTCGG 59.125 37.037 0.00 0.00 41.03 4.30
4219 4785 8.824159 AGAGATTTCAATATGGACTACATTCG 57.176 34.615 0.00 0.00 41.03 3.34
4400 4967 2.282040 ACTGCTTGAGGTGCTGGC 60.282 61.111 0.00 0.00 34.40 4.85
4547 5115 4.937015 GCATGTCATTTAAAATGGCAAGGT 59.063 37.500 0.00 0.00 37.18 3.50
4692 5267 6.939163 ACAAATCATTGATAGGAGGCTATCAC 59.061 38.462 0.00 0.00 43.52 3.06
4748 6974 0.764890 AGCTGCCAACAACCACTAGA 59.235 50.000 0.00 0.00 0.00 2.43
5029 11087 2.434359 CCTCCCGCGACAAGGTTC 60.434 66.667 8.23 0.00 0.00 3.62
5186 11244 7.272144 AGTCATAACCAAACTAAGGGAGAAT 57.728 36.000 0.00 0.00 0.00 2.40
5187 11245 6.697641 AGTCATAACCAAACTAAGGGAGAA 57.302 37.500 0.00 0.00 0.00 2.87
5188 11246 6.697641 AAGTCATAACCAAACTAAGGGAGA 57.302 37.500 0.00 0.00 0.00 3.71
5297 11355 9.221775 GACAACTAAGTTTGTAAAAGACACATG 57.778 33.333 0.00 0.00 39.88 3.21
5378 11436 3.650070 TGTATAGCCAAGAGATCTGCG 57.350 47.619 0.00 0.00 0.00 5.18
5536 11594 3.083997 AGGTCCAAGGGGCTAGCG 61.084 66.667 9.00 0.00 0.00 4.26
5577 11641 3.138283 ACCACATAGAGGGAGAGAGAGAG 59.862 52.174 0.00 0.00 0.00 3.20
5578 11642 3.127250 ACCACATAGAGGGAGAGAGAGA 58.873 50.000 0.00 0.00 0.00 3.10
5579 11643 3.138283 AGACCACATAGAGGGAGAGAGAG 59.862 52.174 0.00 0.00 0.00 3.20
5580 11644 3.117701 CAGACCACATAGAGGGAGAGAGA 60.118 52.174 0.00 0.00 0.00 3.10
5590 11654 1.479323 GGTAACCGCAGACCACATAGA 59.521 52.381 0.00 0.00 35.65 1.98
5593 11657 0.249398 GAGGTAACCGCAGACCACAT 59.751 55.000 0.00 0.00 38.27 3.21
5784 11848 2.031333 CACAGGAGAAAGAGCAACAAGC 60.031 50.000 0.00 0.00 46.19 4.01
5785 11849 3.209410 ACACAGGAGAAAGAGCAACAAG 58.791 45.455 0.00 0.00 0.00 3.16
5807 11871 7.501559 AGTCAACTGTCACAAGTAGACTACTTA 59.498 37.037 24.11 9.44 46.66 2.24
5821 11886 7.907214 AATTATCCTGTTAGTCAACTGTCAC 57.093 36.000 0.00 0.00 35.56 3.67
6033 12100 2.787473 TCCTGGTTCAGCAAGTATGG 57.213 50.000 0.00 0.00 0.00 2.74
6167 12234 0.396139 ATGGAAATGCAGATGCGGGT 60.396 50.000 0.00 0.00 45.83 5.28
6189 12256 1.479730 GTAATTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
6190 12257 1.755380 AGTAATTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
6191 12258 1.856629 AGTAATTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
6192 12259 2.277084 CAAGTAATTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
6193 12260 2.968675 ACAAGTAATTTCGGACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
6194 12261 3.424433 GCAACAAGTAATTTCGGACGGAG 60.424 47.826 0.00 0.00 0.00 4.63
6195 12262 2.481185 GCAACAAGTAATTTCGGACGGA 59.519 45.455 0.00 0.00 0.00 4.69
6196 12263 2.723618 CGCAACAAGTAATTTCGGACGG 60.724 50.000 0.00 0.00 0.00 4.79
6197 12264 2.492001 CGCAACAAGTAATTTCGGACG 58.508 47.619 0.00 0.00 0.00 4.79
6198 12265 2.481185 TCCGCAACAAGTAATTTCGGAC 59.519 45.455 0.00 0.00 39.36 4.79
6199 12266 2.768698 TCCGCAACAAGTAATTTCGGA 58.231 42.857 0.00 0.00 41.58 4.55
6200 12267 3.546002 TTCCGCAACAAGTAATTTCGG 57.454 42.857 0.00 0.00 37.00 4.30
6201 12268 4.323336 CCATTTCCGCAACAAGTAATTTCG 59.677 41.667 0.00 0.00 0.00 3.46
6202 12269 5.465935 TCCATTTCCGCAACAAGTAATTTC 58.534 37.500 0.00 0.00 0.00 2.17
6203 12270 5.461032 TCCATTTCCGCAACAAGTAATTT 57.539 34.783 0.00 0.00 0.00 1.82
6204 12271 5.047377 ACATCCATTTCCGCAACAAGTAATT 60.047 36.000 0.00 0.00 0.00 1.40
6205 12272 4.462483 ACATCCATTTCCGCAACAAGTAAT 59.538 37.500 0.00 0.00 0.00 1.89
6206 12273 3.823873 ACATCCATTTCCGCAACAAGTAA 59.176 39.130 0.00 0.00 0.00 2.24
6207 12274 3.417101 ACATCCATTTCCGCAACAAGTA 58.583 40.909 0.00 0.00 0.00 2.24
6208 12275 2.238521 ACATCCATTTCCGCAACAAGT 58.761 42.857 0.00 0.00 0.00 3.16
6209 12276 4.336433 AGATACATCCATTTCCGCAACAAG 59.664 41.667 0.00 0.00 0.00 3.16
6210 12277 4.269183 AGATACATCCATTTCCGCAACAA 58.731 39.130 0.00 0.00 0.00 2.83
6211 12278 3.884895 AGATACATCCATTTCCGCAACA 58.115 40.909 0.00 0.00 0.00 3.33
6212 12279 5.177696 GTCTAGATACATCCATTTCCGCAAC 59.822 44.000 0.00 0.00 0.00 4.17
6213 12280 5.297547 GTCTAGATACATCCATTTCCGCAA 58.702 41.667 0.00 0.00 0.00 4.85
6214 12281 4.558697 CGTCTAGATACATCCATTTCCGCA 60.559 45.833 0.00 0.00 0.00 5.69
6215 12282 3.921021 CGTCTAGATACATCCATTTCCGC 59.079 47.826 0.00 0.00 0.00 5.54
6216 12283 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
6217 12284 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
6250 12317 8.796475 CGGAATTGGATAAAAATGGATGTATCT 58.204 33.333 0.00 0.00 0.00 1.98
6251 12318 7.542130 GCGGAATTGGATAAAAATGGATGTATC 59.458 37.037 0.00 0.00 0.00 2.24
6252 12319 7.378181 GCGGAATTGGATAAAAATGGATGTAT 58.622 34.615 0.00 0.00 0.00 2.29
6253 12320 6.514212 CGCGGAATTGGATAAAAATGGATGTA 60.514 38.462 0.00 0.00 0.00 2.29
6254 12321 5.600696 GCGGAATTGGATAAAAATGGATGT 58.399 37.500 0.00 0.00 0.00 3.06
6255 12322 4.681025 CGCGGAATTGGATAAAAATGGATG 59.319 41.667 0.00 0.00 0.00 3.51
6256 12323 4.582656 TCGCGGAATTGGATAAAAATGGAT 59.417 37.500 6.13 0.00 0.00 3.41
6257 12324 3.948473 TCGCGGAATTGGATAAAAATGGA 59.052 39.130 6.13 0.00 0.00 3.41
6258 12325 4.041723 GTCGCGGAATTGGATAAAAATGG 58.958 43.478 6.13 0.00 0.00 3.16
6259 12326 4.667262 TGTCGCGGAATTGGATAAAAATG 58.333 39.130 6.13 0.00 0.00 2.32
6260 12327 4.974368 TGTCGCGGAATTGGATAAAAAT 57.026 36.364 6.13 0.00 0.00 1.82
6261 12328 4.216687 ACTTGTCGCGGAATTGGATAAAAA 59.783 37.500 6.13 0.00 0.00 1.94
6262 12329 3.754323 ACTTGTCGCGGAATTGGATAAAA 59.246 39.130 6.13 0.00 0.00 1.52
6263 12330 3.340034 ACTTGTCGCGGAATTGGATAAA 58.660 40.909 6.13 0.00 0.00 1.40
6264 12331 2.980568 ACTTGTCGCGGAATTGGATAA 58.019 42.857 6.13 0.00 0.00 1.75
6265 12332 2.684001 ACTTGTCGCGGAATTGGATA 57.316 45.000 6.13 0.00 0.00 2.59
6266 12333 2.684001 TACTTGTCGCGGAATTGGAT 57.316 45.000 6.13 0.00 0.00 3.41
6267 12334 2.459060 TTACTTGTCGCGGAATTGGA 57.541 45.000 6.13 0.00 0.00 3.53
6268 12335 3.486875 GGAATTACTTGTCGCGGAATTGG 60.487 47.826 6.13 0.00 0.00 3.16
6269 12336 3.680789 GGAATTACTTGTCGCGGAATTG 58.319 45.455 6.13 0.00 0.00 2.32
6270 12337 2.350498 CGGAATTACTTGTCGCGGAATT 59.650 45.455 6.13 3.16 0.00 2.17
6271 12338 1.931172 CGGAATTACTTGTCGCGGAAT 59.069 47.619 6.13 0.00 0.00 3.01
6272 12339 1.352114 CGGAATTACTTGTCGCGGAA 58.648 50.000 6.13 0.00 0.00 4.30
6273 12340 0.458889 CCGGAATTACTTGTCGCGGA 60.459 55.000 6.13 0.00 32.57 5.54
6274 12341 0.458889 TCCGGAATTACTTGTCGCGG 60.459 55.000 6.13 0.00 0.00 6.46
6275 12342 0.643820 GTCCGGAATTACTTGTCGCG 59.356 55.000 5.23 0.00 0.00 5.87
6276 12343 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
6277 12344 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
6278 12345 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
6279 12346 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6280 12347 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6281 12348 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
6282 12349 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
6283 12350 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
6284 12351 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
6285 12352 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
6286 12353 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
6287 12354 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
6288 12355 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
6289 12356 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
6290 12357 0.172803 CAAAGTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
6291 12358 1.264295 ACAAAGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
6292 12359 4.430908 CATAACAAAGTACTCCCTCCGTC 58.569 47.826 0.00 0.00 0.00 4.79
6293 12360 3.369157 GCATAACAAAGTACTCCCTCCGT 60.369 47.826 0.00 0.00 0.00 4.69
6294 12361 3.118738 AGCATAACAAAGTACTCCCTCCG 60.119 47.826 0.00 0.00 0.00 4.63
6295 12362 4.489306 AGCATAACAAAGTACTCCCTCC 57.511 45.455 0.00 0.00 0.00 4.30
6296 12363 8.398665 CAAATAAGCATAACAAAGTACTCCCTC 58.601 37.037 0.00 0.00 0.00 4.30
6297 12364 7.888546 ACAAATAAGCATAACAAAGTACTCCCT 59.111 33.333 0.00 0.00 0.00 4.20
6298 12365 7.968405 CACAAATAAGCATAACAAAGTACTCCC 59.032 37.037 0.00 0.00 0.00 4.30
6299 12366 7.968405 CCACAAATAAGCATAACAAAGTACTCC 59.032 37.037 0.00 0.00 0.00 3.85
6300 12367 7.484959 GCCACAAATAAGCATAACAAAGTACTC 59.515 37.037 0.00 0.00 0.00 2.59
6301 12368 7.040062 TGCCACAAATAAGCATAACAAAGTACT 60.040 33.333 0.00 0.00 0.00 2.73
6302 12369 7.061789 GTGCCACAAATAAGCATAACAAAGTAC 59.938 37.037 0.00 0.00 39.04 2.73
6303 12370 7.087639 GTGCCACAAATAAGCATAACAAAGTA 58.912 34.615 0.00 0.00 39.04 2.24
6660 12727 9.878599 AAGTCTGTGAATTAACATTTAAAGACG 57.121 29.630 0.00 0.00 43.51 4.18
6815 12882 1.219124 GGGCTCAATCGCACAGAGA 59.781 57.895 0.00 0.00 32.31 3.10
6818 12885 1.970917 GAACGGGCTCAATCGCACAG 61.971 60.000 0.00 0.00 31.16 3.66
6883 12952 1.396301 GATCAAAGCGTGCCAAGAGAG 59.604 52.381 0.00 0.00 0.00 3.20
6918 13028 1.959747 CTGCATGCTTTTGTCAGTCG 58.040 50.000 20.33 0.00 0.00 4.18
6960 13070 4.960469 ACAAAGTCGATAATCCCCTGTAGA 59.040 41.667 0.00 0.00 0.00 2.59
7029 13140 0.539518 TGCAAGCGTTGGCCTCTATA 59.460 50.000 3.32 0.00 41.24 1.31
7030 13141 0.322456 TTGCAAGCGTTGGCCTCTAT 60.322 50.000 3.32 0.00 41.24 1.98
7095 13210 1.080298 TTTGGCACCGCATACGTTAG 58.920 50.000 0.00 0.00 37.70 2.34
7106 13221 1.268265 GATTTCGCGAATTTGGCACC 58.732 50.000 24.05 2.33 0.00 5.01
7119 13234 6.422223 CGGAAATGGAAGAATAGTGATTTCG 58.578 40.000 0.00 0.00 32.83 3.46
7208 13377 6.629128 CCACATGTTCAAAGTGGCAAATATA 58.371 36.000 0.00 0.00 45.39 0.86
7269 13438 1.470098 CCACTAGCTGTGTGGCATTTC 59.530 52.381 22.08 0.00 46.73 2.17
7279 13448 2.230660 GCAACCTTTTCCACTAGCTGT 58.769 47.619 0.00 0.00 0.00 4.40
7296 13465 2.489971 CTAGACAAGACGTTTGGGCAA 58.510 47.619 12.79 0.00 0.00 4.52
7339 13508 4.754618 CACCCCTTTTCCAACAATAAAAGC 59.245 41.667 0.00 0.00 40.01 3.51
7431 13615 1.409241 GGATTTGAGCCAGAGCCATGA 60.409 52.381 0.00 0.00 41.25 3.07
7539 13771 1.141234 GAAGACGGTCCCCATCGAC 59.859 63.158 4.14 0.00 0.00 4.20
7549 13790 5.878669 GGATACTGTATTTTTGGAAGACGGT 59.121 40.000 1.22 3.84 34.16 4.83
7569 13810 4.233521 TCTGGAGGTTACCTTACAGGGATA 59.766 45.833 25.79 12.00 40.58 2.59
7571 13812 2.384375 TCTGGAGGTTACCTTACAGGGA 59.616 50.000 25.79 12.94 40.58 4.20
7573 13814 2.168728 GCTCTGGAGGTTACCTTACAGG 59.831 54.545 25.79 19.87 42.49 4.00
7586 14196 3.118112 ACCATGGTATGAAAGCTCTGGAG 60.118 47.826 18.10 0.00 34.85 3.86
7597 14207 4.878968 TCTCAGTAGGAACCATGGTATGA 58.121 43.478 20.12 13.85 0.00 2.15
7612 14222 6.218746 TCGCTGATATACGTACTTCTCAGTA 58.781 40.000 18.76 10.34 34.13 2.74
7646 14256 2.840651 AGAGAAACGGGAGAATGTGGAT 59.159 45.455 0.00 0.00 0.00 3.41
7650 14260 3.557264 GGTGAAGAGAAACGGGAGAATGT 60.557 47.826 0.00 0.00 0.00 2.71
7673 14284 0.672401 GACGAGCATGGGAACGGAAA 60.672 55.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.