AutoCloner

Multiple sequence alignment - TraesCS5D01G210600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G210600	chr5D	100.000	3338	0	0	1	3338	318935208	318931871	0.000000e+00	6165.0
1	TraesCS5D01G210600	chr5D	84.377	1581	182	44	810	2349	326903551	326905107	0.000000e+00	1491.0
2	TraesCS5D01G210600	chr5D	98.207	725	12	1	2615	3338	513528340	513529064	0.000000e+00	1266.0
3	TraesCS5D01G210600	chr5D	80.221	723	120	17	1173	1884	319138528	319137818	3.820000e-144	521.0
4	TraesCS5D01G210600	chr5A	90.448	2565	141	37	1	2503	415429448	415431970	0.000000e+00	3284.0
5	TraesCS5D01G210600	chr5A	82.913	1703	188	66	813	2449	429657291	429655626	0.000000e+00	1437.0
6	TraesCS5D01G210600	chr5B	94.273	1816	72	12	706	2503	368787404	368785603	0.000000e+00	2748.0
7	TraesCS5D01G210600	chr5B	84.194	1588	169	50	813	2349	379596710	379598266	0.000000e+00	1467.0
8	TraesCS5D01G210600	chr5B	92.081	442	23	5	280	721	368788384	368787955	2.200000e-171	612.0
9	TraesCS5D01G210600	chr5B	92.245	245	14	1	1	240	368788627	368788383	3.190000e-90	342.0
10	TraesCS5D01G210600	chrUn	92.253	697	43	6	2598	3285	318890114	318890808	0.000000e+00	977.0
11	TraesCS5D01G210600	chrUn	91.989	699	43	7	2598	3285	341636672	341637368	0.000000e+00	968.0
12	TraesCS5D01G210600	chrUn	92.857	238	16	1	2598	2835	351552029	351551793	8.870000e-91	344.0
13	TraesCS5D01G210600	chr3B	92.253	697	43	6	2598	3285	740139563	740140257	0.000000e+00	977.0
14	TraesCS5D01G210600	chr3B	91.595	702	43	7	2598	3285	740123385	740124084	0.000000e+00	955.0
15	TraesCS5D01G210600	chr3B	87.432	732	60	17	2629	3338	776042385	776041664	0.000000e+00	813.0
16	TraesCS5D01G210600	chr3B	93.548	496	27	5	2592	3084	780801063	780800570	0.000000e+00	734.0
17	TraesCS5D01G210600	chr3B	92.094	468	25	7	2828	3285	740140566	740141031	0.000000e+00	649.0
18	TraesCS5D01G210600	chr2A	92.537	603	35	4	2738	3337	51541589	51542184	0.000000e+00	856.0
19	TraesCS5D01G210600	chr2A	97.331	487	11	2	2853	3338	705757711	705757226	0.000000e+00	826.0
20	TraesCS5D01G210600	chr2A	95.620	274	7	2	2592	2860	705758242	705757969	5.110000e-118	435.0
21	TraesCS5D01G210600	chr2A	100.000	34	0	0	2592	2625	706211002	706211035	2.780000e-06	63.9
22	TraesCS5D01G210600	chr7D	88.566	516	58	1	1369	1884	138086557	138086043	2.830000e-175	625.0
23	TraesCS5D01G210600	chr7D	87.209	516	66	0	1369	1884	138038832	138038317	3.710000e-164	588.0
24	TraesCS5D01G210600	chr7D	87.466	367	42	2	1974	2338	138038319	138037955	1.430000e-113	420.0
25	TraesCS5D01G210600	chr7D	87.258	361	43	3	1974	2334	138086045	138085688	3.100000e-110	409.0
26	TraesCS5D01G210600	chr7D	93.220	118	8	0	1173	1290	138086673	138086556	1.230000e-39	174.0
27	TraesCS5D01G210600	chr7A	88.178	516	61	0	1369	1884	138012319	138011804	1.700000e-172	616.0
28	TraesCS5D01G210600	chr7A	88.283	367	39	2	1974	2338	138011806	138011442	1.420000e-118	436.0
29	TraesCS5D01G210600	chr7A	90.678	118	11	0	1173	1290	138012435	138012318	1.240000e-34	158.0
30	TraesCS5D01G210600	chr6D	80.620	129	21	3	2207	2332	141930453	141930580	2.740000e-16	97.1
31	TraesCS5D01G210600	chr7B	100.000	28	0	0	149	176	55726433	55726406	6.000000e-03	52.8
32	TraesCS5D01G210600	chr7B	96.774	31	1	0	220	250	607191048	607191078	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G210600	chr5D	318931871	318935208	3337	True	6165.000000	6165	100.000000	1	3338	1	chr5D.!!$R1	3337
1	TraesCS5D01G210600	chr5D	326903551	326905107	1556	False	1491.000000	1491	84.377000	810	2349	1	chr5D.!!$F1	1539
2	TraesCS5D01G210600	chr5D	513528340	513529064	724	False	1266.000000	1266	98.207000	2615	3338	1	chr5D.!!$F2	723
3	TraesCS5D01G210600	chr5D	319137818	319138528	710	True	521.000000	521	80.221000	1173	1884	1	chr5D.!!$R2	711
4	TraesCS5D01G210600	chr5A	415429448	415431970	2522	False	3284.000000	3284	90.448000	1	2503	1	chr5A.!!$F1	2502
5	TraesCS5D01G210600	chr5A	429655626	429657291	1665	True	1437.000000	1437	82.913000	813	2449	1	chr5A.!!$R1	1636
6	TraesCS5D01G210600	chr5B	379596710	379598266	1556	False	1467.000000	1467	84.194000	813	2349	1	chr5B.!!$F1	1536
7	TraesCS5D01G210600	chr5B	368785603	368788627	3024	True	1234.000000	2748	92.866333	1	2503	3	chr5B.!!$R1	2502
8	TraesCS5D01G210600	chrUn	318890114	318890808	694	False	977.000000	977	92.253000	2598	3285	1	chrUn.!!$F1	687
9	TraesCS5D01G210600	chrUn	341636672	341637368	696	False	968.000000	968	91.989000	2598	3285	1	chrUn.!!$F2	687
10	TraesCS5D01G210600	chr3B	740123385	740124084	699	False	955.000000	955	91.595000	2598	3285	1	chr3B.!!$F1	687
11	TraesCS5D01G210600	chr3B	740139563	740141031	1468	False	813.000000	977	92.173500	2598	3285	2	chr3B.!!$F2	687
12	TraesCS5D01G210600	chr3B	776041664	776042385	721	True	813.000000	813	87.432000	2629	3338	1	chr3B.!!$R1	709
13	TraesCS5D01G210600	chr2A	51541589	51542184	595	False	856.000000	856	92.537000	2738	3337	1	chr2A.!!$F1	599
14	TraesCS5D01G210600	chr2A	705757226	705758242	1016	True	630.500000	826	96.475500	2592	3338	2	chr2A.!!$R1	746
15	TraesCS5D01G210600	chr7D	138037955	138038832	877	True	504.000000	588	87.337500	1369	2338	2	chr7D.!!$R1	969
16	TraesCS5D01G210600	chr7D	138085688	138086673	985	True	402.666667	625	89.681333	1173	2334	3	chr7D.!!$R2	1161
17	TraesCS5D01G210600	chr7A	138011442	138012435	993	True	403.333333	616	89.046333	1173	2338	3	chr7A.!!$R1	1165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
55	57	0.037419	ATGGTGCCGGAACAAAATGC	60.037	50.0	16.38	0.00	3.56	F
376	384	0.314302	ACGTCTTCTCCCACTGAACG	59.686	55.0	0.00	0.00	3.95	F
1120	1776	0.390860	ATCATGGCGGTACTCTGCTC	59.609	55.0	0.00	44.62	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1100	1751	0.105593	AGCAGAGTACCGCCATGATG	59.894	55.0	0.0	0.00	3.07	R
1867	2601	0.250684	TCACCTTCATTTGCTCGGCA	60.251	50.0	0.0	36.47	5.69	R
2574	3343	0.885879	CTGCATTGAAAGAGGCTGCA	59.114	50.0	0.5	40.29	4.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	57	0.037419	ATGGTGCCGGAACAAAATGC	60.037	50.000	16.38	0.00	0.00	3.56
105	107	3.597728	GCGGCCGGAAAACAACCA	61.598	61.111	29.38	0.00	0.00	3.67
112	114	1.069978	CCGGAAAACAACCATTTGCCT	59.930	47.619	0.00	0.00	35.32	4.75
116	118	4.994217	CGGAAAACAACCATTTGCCTTATT	59.006	37.500	0.00	0.00	35.32	1.40
218	221	5.154932	CCATCTACTGAATCGTCGGTTATC	58.845	45.833	0.00	0.00	40.72	1.75
259	267	6.014669	TGCAGATGCCCATATATACGCATATA	60.015	38.462	15.23	0.00	41.85	0.86
261	269	7.378181	CAGATGCCCATATATACGCATATACA	58.622	38.462	15.23	0.00	41.85	2.29
262	270	7.543520	CAGATGCCCATATATACGCATATACAG	59.456	40.741	15.23	2.31	41.85	2.74
278	286	4.701333	ATACAGGCATCCCTACCTCTAT	57.299	45.455	0.00	0.00	40.33	1.98
287	295	1.967066	CCCTACCTCTATGAGCACCTG	59.033	57.143	0.00	0.00	0.00	4.00
288	296	2.672098	CCTACCTCTATGAGCACCTGT	58.328	52.381	0.00	0.00	0.00	4.00
295	303	3.837146	CTCTATGAGCACCTGTGGGATAT	59.163	47.826	0.00	0.00	36.25	1.63
312	320	4.508124	GGGATATCGAGTCAACACAACATC	59.492	45.833	0.00	0.00	0.00	3.06
315	323	6.978659	GGATATCGAGTCAACACAACATCTTA	59.021	38.462	0.00	0.00	0.00	2.10
317	325	8.948631	ATATCGAGTCAACACAACATCTTAAT	57.051	30.769	0.00	0.00	0.00	1.40
349	357	4.256920	GCCATCACAGTGTCTTCATAGTT	58.743	43.478	0.00	0.00	0.00	2.24
376	384	0.314302	ACGTCTTCTCCCACTGAACG	59.686	55.000	0.00	0.00	0.00	3.95
403	411	9.840427	AACATCGACGAAAAATCTGAAATAAAT	57.160	25.926	0.00	0.00	0.00	1.40
619	659	2.462565	GCTTCGCGGTTTTTAATATGCG	59.537	45.455	6.13	0.00	46.27	4.73
624	664	2.976729	CGGTTTTTAATATGCGGACCG	58.023	47.619	10.29	10.29	41.89	4.79
807	1430	2.015587	GAGTCGACCAGTAGTAGGTGG	58.984	57.143	13.01	0.00	40.09	4.61
839	1463	1.334992	CGTAGTGTCTGACGTTGCCG	61.335	60.000	2.98	0.00	40.83	5.69
898	1523	3.067106	CGTCGGCATGCCTATTTATTCT	58.933	45.455	33.07	0.00	0.00	2.40
911	1536	3.753294	TTTATTCTCATCTCCGGGCTC	57.247	47.619	0.00	0.00	0.00	4.70
923	1549	4.767255	GGGCTCGGCAGTGACCAG	62.767	72.222	5.87	0.00	38.86	4.00
955	1583	3.849911	TGTGAGCAGGAAATCGAAGTAG	58.150	45.455	0.00	0.00	0.00	2.57
978	1606	1.467678	AGCTCGGAGCATAGGCGAAT	61.468	55.000	29.88	4.79	45.56	3.34
1100	1751	2.321719	GTCTTCCTCTATCCAGTCCCC	58.678	57.143	0.00	0.00	0.00	4.81
1120	1776	0.390860	ATCATGGCGGTACTCTGCTC	59.609	55.000	0.00	0.00	44.62	4.26
1123	1779	4.874977	GGCGGTACTCTGCTCGGC	62.875	72.222	0.00	0.00	44.62	5.54
1127	1795	2.409651	GTACTCTGCTCGGCCTCG	59.590	66.667	0.00	0.00	37.82	4.63
1350	2060	9.174166	GACTACAATGGTGGATTAATTGTTACT	57.826	33.333	5.67	0.00	40.68	2.24
1356	2066	5.875910	TGGTGGATTAATTGTTACTACCGTG	59.124	40.000	0.00	0.00	0.00	4.94
1385	2112	0.745486	CAGGCATGAGATCGTTGGCA	60.745	55.000	17.05	0.00	0.00	4.92
1513	2240	0.830444	ACGAGAACTACTGCCCCACA	60.830	55.000	0.00	0.00	0.00	4.17
1702	2435	2.813908	CAGTACGGCCTCAACGCC	60.814	66.667	0.00	0.00	46.13	5.68
1867	2601	1.299976	GTTCTTGGTCAGCCGGGAT	59.700	57.895	2.18	0.00	37.67	3.85
1930	2678	0.534877	TGACCCTGTGTGTGCATGAC	60.535	55.000	0.00	0.00	0.00	3.06
2273	3036	3.706373	GGTGGAGCGGCTGGAGAA	61.706	66.667	7.50	0.00	0.00	2.87
2367	3135	1.722677	GTAGACTCTCGGCGGTCAG	59.277	63.158	15.33	8.04	35.18	3.51
2415	3184	4.282195	GGTGTTGTTATTTCCATGGGTTGA	59.718	41.667	13.02	0.00	0.00	3.18
2492	3261	2.546778	GCCATGTTCCGTTCTCGAATA	58.453	47.619	0.00	0.00	39.71	1.75
2503	3272	9.122613	GTTCCGTTCTCGAATATTACCTATAAC	57.877	37.037	0.00	0.00	39.71	1.89
2504	3273	8.627208	TCCGTTCTCGAATATTACCTATAACT	57.373	34.615	0.00	0.00	39.71	2.24
2505	3274	8.509690	TCCGTTCTCGAATATTACCTATAACTG	58.490	37.037	0.00	0.00	39.71	3.16
2506	3275	8.295288	CCGTTCTCGAATATTACCTATAACTGT	58.705	37.037	0.00	0.00	39.71	3.55
2519	3288	7.676683	ACCTATAACTGTAGAACATCCATGT	57.323	36.000	0.00	0.00	44.20	3.21
2520	3289	7.500992	ACCTATAACTGTAGAACATCCATGTG	58.499	38.462	0.00	0.00	41.61	3.21
2521	3290	7.125811	ACCTATAACTGTAGAACATCCATGTGT	59.874	37.037	0.00	0.00	41.61	3.72
2522	3291	7.987458	CCTATAACTGTAGAACATCCATGTGTT	59.013	37.037	1.57	1.57	44.53	3.32
2523	3292	5.947228	AACTGTAGAACATCCATGTGTTG	57.053	39.130	6.44	0.00	42.08	3.33
2524	3293	3.753272	ACTGTAGAACATCCATGTGTTGC	59.247	43.478	6.44	0.18	42.08	4.17
2525	3294	3.081061	TGTAGAACATCCATGTGTTGCC	58.919	45.455	6.44	0.00	42.08	4.52
2526	3295	2.291209	AGAACATCCATGTGTTGCCA	57.709	45.000	6.44	0.00	42.08	4.92
2527	3296	1.888512	AGAACATCCATGTGTTGCCAC	59.111	47.619	6.44	0.00	42.08	5.01
2528	3297	0.597568	AACATCCATGTGTTGCCACG	59.402	50.000	1.17	0.00	44.92	4.94
2529	3298	1.243342	ACATCCATGTGTTGCCACGG	61.243	55.000	0.00	0.00	44.92	4.94
2530	3299	1.678635	ATCCATGTGTTGCCACGGG	60.679	57.895	0.00	0.00	44.92	5.28
2542	3311	2.271944	GCCACGGGCCTTATAATCTT	57.728	50.000	0.84	0.00	44.06	2.40
2543	3312	2.583143	GCCACGGGCCTTATAATCTTT	58.417	47.619	0.84	0.00	44.06	2.52
2544	3313	2.956333	GCCACGGGCCTTATAATCTTTT	59.044	45.455	0.84	0.00	44.06	2.27
2545	3314	3.004419	GCCACGGGCCTTATAATCTTTTC	59.996	47.826	0.84	0.00	44.06	2.29
2546	3315	3.568430	CCACGGGCCTTATAATCTTTTCC	59.432	47.826	0.84	0.00	0.00	3.13
2547	3316	4.461198	CACGGGCCTTATAATCTTTTCCT	58.539	43.478	0.84	0.00	0.00	3.36
2548	3317	5.455612	CCACGGGCCTTATAATCTTTTCCTA	60.456	44.000	0.84	0.00	0.00	2.94
2549	3318	6.059484	CACGGGCCTTATAATCTTTTCCTAA	58.941	40.000	0.84	0.00	0.00	2.69
2550	3319	6.715264	CACGGGCCTTATAATCTTTTCCTAAT	59.285	38.462	0.84	0.00	0.00	1.73
2551	3320	7.230712	CACGGGCCTTATAATCTTTTCCTAATT	59.769	37.037	0.84	0.00	0.00	1.40
2552	3321	8.442374	ACGGGCCTTATAATCTTTTCCTAATTA	58.558	33.333	0.84	0.00	0.00	1.40
2553	3322	9.462606	CGGGCCTTATAATCTTTTCCTAATTAT	57.537	33.333	0.84	0.00	32.07	1.28
2578	3347	8.894409	TTGTATAAAACTCGATGAATTTGCAG	57.106	30.769	0.00	0.00	0.00	4.41
2579	3348	6.966632	TGTATAAAACTCGATGAATTTGCAGC	59.033	34.615	0.00	0.00	0.00	5.25
2580	3349	2.927553	AACTCGATGAATTTGCAGCC	57.072	45.000	0.00	0.00	0.00	4.85
2581	3350	2.119801	ACTCGATGAATTTGCAGCCT	57.880	45.000	0.00	0.00	0.00	4.58
2582	3351	2.012673	ACTCGATGAATTTGCAGCCTC	58.987	47.619	0.00	0.00	0.00	4.70
2583	3352	2.286872	CTCGATGAATTTGCAGCCTCT	58.713	47.619	0.00	0.00	0.00	3.69
2584	3353	2.681848	CTCGATGAATTTGCAGCCTCTT	59.318	45.455	0.00	0.00	0.00	2.85
2585	3354	3.084039	TCGATGAATTTGCAGCCTCTTT	58.916	40.909	0.00	0.00	0.00	2.52
2586	3355	3.127548	TCGATGAATTTGCAGCCTCTTTC	59.872	43.478	0.00	0.00	0.00	2.62
2587	3356	3.119743	CGATGAATTTGCAGCCTCTTTCA	60.120	43.478	0.00	0.00	0.00	2.69
2588	3357	4.616604	CGATGAATTTGCAGCCTCTTTCAA	60.617	41.667	0.00	0.00	0.00	2.69
2589	3358	4.877378	TGAATTTGCAGCCTCTTTCAAT	57.123	36.364	0.00	0.00	0.00	2.57
2590	3359	4.562082	TGAATTTGCAGCCTCTTTCAATG	58.438	39.130	0.00	0.00	0.00	2.82
2690	3460	6.312918	GCTAAGATTTGTGTTTCTGGTCGATA	59.687	38.462	0.00	0.00	0.00	2.92
3212	5050	7.624360	TGTATTCCTATGTCACCATGTTTTC	57.376	36.000	0.00	0.00	32.29	2.29
3275	5115	8.745837	CATTTCTTCTGACATGTGTTGTAAAAC	58.254	33.333	1.15	0.00	39.18	2.43
3285	5125	6.265196	ACATGTGTTGTAAAACTGGATGTGAT	59.735	34.615	0.00	0.00	36.57	3.06
3302	5142	5.996669	TGTGATATGCTCTATTGCTTGTG	57.003	39.130	0.00	0.00	0.00	3.33

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
105	107	6.916360	TCTGTCCTTTTGAATAAGGCAAAT	57.084	33.333	0.00	0.00	43.62	2.32
112	114	5.646360	GTCCGGATTCTGTCCTTTTGAATAA	59.354	40.000	7.81	0.00	45.46	1.40
116	118	2.370519	TGTCCGGATTCTGTCCTTTTGA	59.629	45.455	7.81	0.00	45.46	2.69
156	159	1.275291	TCTCTTAGGCCAACTCCAACG	59.725	52.381	5.01	0.00	0.00	4.10
218	221	5.388111	CATCTGCATTGTACTGTGTTCAAG	58.612	41.667	0.00	0.00	0.00	3.02
259	267	2.180086	TCATAGAGGTAGGGATGCCTGT	59.820	50.000	17.38	0.00	34.81	4.00
261	269	2.825072	GCTCATAGAGGTAGGGATGCCT	60.825	54.545	11.82	11.82	37.91	4.75
262	270	1.552792	GCTCATAGAGGTAGGGATGCC	59.447	57.143	0.00	0.00	0.00	4.40
278	286	0.752658	CGATATCCCACAGGTGCTCA	59.247	55.000	0.00	0.00	0.00	4.26
287	295	3.520290	TGTGTTGACTCGATATCCCAC	57.480	47.619	0.00	0.00	0.00	4.61
288	296	3.259625	TGTTGTGTTGACTCGATATCCCA	59.740	43.478	0.00	0.00	0.00	4.37
295	303	8.655970	CAATATTAAGATGTTGTGTTGACTCGA	58.344	33.333	0.00	0.00	31.82	4.04
376	384	8.874745	TTATTTCAGATTTTTCGTCGATGTTC	57.125	30.769	4.21	0.00	0.00	3.18
619	659	3.419759	ATGTTTGTCGCGCGGTCC	61.420	61.111	31.69	18.36	0.00	4.46
624	664	4.776647	GGGCCATGTTTGTCGCGC	62.777	66.667	4.39	0.00	0.00	6.86
807	1430	4.271533	CAGACACTACGTATCTCCACTCTC	59.728	50.000	0.00	0.00	0.00	3.20
923	1549	0.524862	CTGCTCACAAATCAGGGTGC	59.475	55.000	0.00	0.00	35.04	5.01
955	1583	1.365633	CCTATGCTCCGAGCTGGAC	59.634	63.158	20.87	0.00	43.74	4.02
969	1597	3.397482	CTTGCTCTGCTTATTCGCCTAT	58.603	45.455	0.00	0.00	0.00	2.57
978	1606	3.613030	TGATGATTGCTTGCTCTGCTTA	58.387	40.909	0.00	0.00	0.00	3.09
1047	1682	0.338814	TGTAAGGGGAGAGGAGACCC	59.661	60.000	0.00	0.00	45.06	4.46
1100	1751	0.105593	AGCAGAGTACCGCCATGATG	59.894	55.000	0.00	0.00	0.00	3.07
1127	1795	2.745492	AGCGCAAGAAGCAGAGGC	60.745	61.111	11.47	0.00	46.13	4.70
1180	1855	1.126421	CGTCACATCGTCGTCCTTCG	61.126	60.000	0.00	0.00	41.41	3.79
1513	2240	1.367840	GTTGGAGGTGAGCACGAGT	59.632	57.895	0.00	0.00	0.00	4.18
1609	2342	2.680352	GACAGGCTCTCCGGGACA	60.680	66.667	0.00	0.00	37.47	4.02
1867	2601	0.250684	TCACCTTCATTTGCTCGGCA	60.251	50.000	0.00	0.00	36.47	5.69
1930	2678	3.958147	ATCGCCACCGTGCCAAGAG	62.958	63.158	0.00	0.00	35.54	2.85
2273	3036	1.871772	CGGTACCTCACGTCGTTCT	59.128	57.895	10.90	0.00	0.00	3.01
2415	3184	5.471556	TGAAAATCTGGAAATGCACACAT	57.528	34.783	0.00	0.00	38.49	3.21
2503	3272	3.127548	GGCAACACATGGATGTTCTACAG	59.872	47.826	0.00	0.00	40.89	2.74
2504	3273	3.081061	GGCAACACATGGATGTTCTACA	58.919	45.455	0.00	0.00	40.89	2.74
2505	3274	3.081061	TGGCAACACATGGATGTTCTAC	58.919	45.455	0.00	0.00	46.17	2.59
2506	3275	3.431673	TGGCAACACATGGATGTTCTA	57.568	42.857	0.00	0.00	46.17	2.10
2507	3276	2.291209	TGGCAACACATGGATGTTCT	57.709	45.000	0.00	0.00	46.17	3.01
2524	3293	3.568430	GGAAAAGATTATAAGGCCCGTGG	59.432	47.826	0.00	0.00	0.00	4.94
2525	3294	4.461198	AGGAAAAGATTATAAGGCCCGTG	58.539	43.478	0.00	0.00	0.00	4.94
2526	3295	4.790718	AGGAAAAGATTATAAGGCCCGT	57.209	40.909	0.00	0.00	0.00	5.28
2527	3296	7.761038	AATTAGGAAAAGATTATAAGGCCCG	57.239	36.000	0.00	0.00	0.00	6.13
2552	3321	9.507280	CTGCAAATTCATCGAGTTTTATACAAT	57.493	29.630	0.00	0.00	0.00	2.71
2553	3322	7.484641	GCTGCAAATTCATCGAGTTTTATACAA	59.515	33.333	0.00	0.00	0.00	2.41
2554	3323	6.966632	GCTGCAAATTCATCGAGTTTTATACA	59.033	34.615	0.00	0.00	0.00	2.29
2555	3324	6.414987	GGCTGCAAATTCATCGAGTTTTATAC	59.585	38.462	0.50	0.00	0.00	1.47
2556	3325	6.318648	AGGCTGCAAATTCATCGAGTTTTATA	59.681	34.615	0.50	0.00	0.00	0.98
2557	3326	5.126061	AGGCTGCAAATTCATCGAGTTTTAT	59.874	36.000	0.50	0.00	0.00	1.40
2558	3327	4.458989	AGGCTGCAAATTCATCGAGTTTTA	59.541	37.500	0.50	0.00	0.00	1.52
2559	3328	3.256631	AGGCTGCAAATTCATCGAGTTTT	59.743	39.130	0.50	0.00	0.00	2.43
2560	3329	2.821969	AGGCTGCAAATTCATCGAGTTT	59.178	40.909	0.50	0.00	0.00	2.66
2561	3330	2.421424	GAGGCTGCAAATTCATCGAGTT	59.579	45.455	0.50	0.00	0.00	3.01
2562	3331	2.012673	GAGGCTGCAAATTCATCGAGT	58.987	47.619	0.50	0.00	0.00	4.18
2563	3332	2.286872	AGAGGCTGCAAATTCATCGAG	58.713	47.619	0.50	0.00	0.00	4.04
2564	3333	2.408271	AGAGGCTGCAAATTCATCGA	57.592	45.000	0.50	0.00	0.00	3.59
2565	3334	3.119743	TGAAAGAGGCTGCAAATTCATCG	60.120	43.478	0.50	0.00	0.00	3.84
2566	3335	4.445452	TGAAAGAGGCTGCAAATTCATC	57.555	40.909	0.50	0.00	0.00	2.92
2567	3336	4.877378	TTGAAAGAGGCTGCAAATTCAT	57.123	36.364	0.50	0.00	0.00	2.57
2568	3337	4.562082	CATTGAAAGAGGCTGCAAATTCA	58.438	39.130	0.50	3.78	0.00	2.57
2569	3338	3.370061	GCATTGAAAGAGGCTGCAAATTC	59.630	43.478	0.50	1.08	33.13	2.17
2570	3339	3.244284	TGCATTGAAAGAGGCTGCAAATT	60.244	39.130	0.50	0.00	39.68	1.82
2571	3340	2.300723	TGCATTGAAAGAGGCTGCAAAT	59.699	40.909	0.50	0.00	39.68	2.32
2572	3341	1.687660	TGCATTGAAAGAGGCTGCAAA	59.312	42.857	0.50	0.00	39.68	3.68
2573	3342	1.271379	CTGCATTGAAAGAGGCTGCAA	59.729	47.619	0.50	0.00	41.81	4.08
2574	3343	0.885879	CTGCATTGAAAGAGGCTGCA	59.114	50.000	0.50	0.00	40.29	4.41
2575	3344	1.171308	TCTGCATTGAAAGAGGCTGC	58.829	50.000	0.00	0.00	0.00	5.25
2576	3345	4.174009	CAAATCTGCATTGAAAGAGGCTG	58.826	43.478	0.00	0.00	0.00	4.85
2577	3346	4.451629	CAAATCTGCATTGAAAGAGGCT	57.548	40.909	0.00	0.00	0.00	4.58
2590	3359	8.016229	CATCTAGATGTGAAATAGCAAATCTGC	58.984	37.037	22.42	0.00	41.70	4.26
3212	5050	5.106157	ACAAAGACCTGACAAGTGAACAAAG	60.106	40.000	0.00	0.00	0.00	2.77
3275	5115	5.489249	AGCAATAGAGCATATCACATCCAG	58.511	41.667	0.00	0.00	36.85	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.