Multiple sequence alignment - TraesCS5D01G210500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G210500 chr5D 100.000 3193 0 0 1 3193 318882653 318885845 0.000000e+00 5897.0
1 TraesCS5D01G210500 chr5D 100.000 3057 0 0 3366 6422 318886018 318889074 0.000000e+00 5646.0
2 TraesCS5D01G210500 chr5D 94.469 1374 58 8 4604 5969 321378448 321377085 0.000000e+00 2100.0
3 TraesCS5D01G210500 chr5D 84.809 2067 169 67 9 2008 321387158 321385170 0.000000e+00 1943.0
4 TraesCS5D01G210500 chr5D 92.464 491 37 0 4116 4606 321383915 321383425 0.000000e+00 702.0
5 TraesCS5D01G210500 chr5D 100.000 345 0 0 6733 7077 318889385 318889729 7.740000e-179 638.0
6 TraesCS5D01G210500 chr5D 89.671 426 37 2 3587 4005 321384758 321384333 2.910000e-148 536.0
7 TraesCS5D01G210500 chr5D 85.172 290 26 7 2057 2335 321385172 321384889 1.500000e-71 281.0
8 TraesCS5D01G210500 chr5D 75.769 260 53 8 2424 2678 435922152 435922406 9.640000e-24 122.0
9 TraesCS5D01G210500 chr5A 92.289 2866 190 18 3568 6413 415570672 415567818 0.000000e+00 4039.0
10 TraesCS5D01G210500 chr5A 91.031 2542 151 37 3463 5968 413235105 413237605 0.000000e+00 3360.0
11 TraesCS5D01G210500 chr5A 84.672 1918 130 84 219 2029 413231201 413233061 0.000000e+00 1762.0
12 TraesCS5D01G210500 chr5A 85.018 1375 92 63 996 2328 415572096 415570794 0.000000e+00 1293.0
13 TraesCS5D01G210500 chr5A 77.227 887 123 49 2336 3185 413234009 413234853 5.040000e-121 446.0
14 TraesCS5D01G210500 chr5A 80.592 608 58 30 376 934 415572698 415572102 1.420000e-111 414.0
15 TraesCS5D01G210500 chr5A 90.764 314 13 8 2032 2331 413233149 413233460 8.550000e-109 405.0
16 TraesCS5D01G210500 chr5A 79.211 380 59 13 9 375 415573646 415573274 5.480000e-61 246.0
17 TraesCS5D01G210500 chr5A 76.806 263 45 15 2424 2678 549933815 549934069 4.450000e-27 134.0
18 TraesCS5D01G210500 chr5B 92.720 2404 155 9 3568 5960 372166963 372164569 0.000000e+00 3452.0
19 TraesCS5D01G210500 chr5B 92.987 1925 112 8 4075 5991 368720326 368722235 0.000000e+00 2785.0
20 TraesCS5D01G210500 chr5B 87.542 1493 85 38 9 1446 368694203 368695649 0.000000e+00 1633.0
21 TraesCS5D01G210500 chr5B 92.086 834 46 14 1507 2328 368697375 368698200 0.000000e+00 1157.0
22 TraesCS5D01G210500 chr5B 90.438 617 36 10 1739 2335 372167686 372167073 0.000000e+00 791.0
23 TraesCS5D01G210500 chr5B 83.955 804 71 23 218 978 372169249 372168461 0.000000e+00 717.0
24 TraesCS5D01G210500 chr5B 91.061 358 12 11 1091 1447 372168405 372168067 3.870000e-127 466.0
25 TraesCS5D01G210500 chr5B 93.976 249 13 2 1507 1753 372167944 372167696 6.700000e-100 375.0
26 TraesCS5D01G210500 chr5B 88.688 221 24 1 3786 4005 368718640 368718860 1.170000e-67 268.0
27 TraesCS5D01G210500 chr5B 81.461 356 26 18 6733 7077 368722751 368723077 9.110000e-64 255.0
28 TraesCS5D01G210500 chr5B 86.400 125 16 1 55 179 372169589 372169466 1.240000e-27 135.0
29 TraesCS5D01G210500 chr7A 78.463 924 151 25 4682 5566 711598902 711599816 1.720000e-155 560.0
30 TraesCS5D01G210500 chr7A 86.420 162 12 6 1184 1345 711597700 711597851 1.220000e-37 169.0
31 TraesCS5D01G210500 chr7A 87.500 128 16 0 1862 1989 711598147 711598274 1.590000e-31 148.0
32 TraesCS5D01G210500 chr7A 93.333 45 2 1 2869 2913 730835147 730835104 1.650000e-06 65.8
33 TraesCS5D01G210500 chr7D 77.182 951 161 30 4659 5566 617823268 617822331 2.950000e-138 503.0
34 TraesCS5D01G210500 chr7D 85.549 173 13 8 1174 1344 617824520 617824358 3.390000e-38 171.0
35 TraesCS5D01G210500 chrUn 90.554 307 21 5 1158 1463 480390217 480389918 3.980000e-107 399.0
36 TraesCS5D01G210500 chr4A 90.545 275 22 3 5698 5968 70976036 70975762 1.880000e-95 361.0
37 TraesCS5D01G210500 chr4A 74.717 265 51 13 2427 2681 595198064 595197806 3.490000e-18 104.0
38 TraesCS5D01G210500 chr6D 75.301 664 117 27 4935 5566 276589020 276588372 2.520000e-69 274.0
39 TraesCS5D01G210500 chr7B 85.549 173 13 8 1174 1344 712080324 712080162 3.390000e-38 171.0
40 TraesCS5D01G210500 chr7B 88.182 110 13 0 2187 2296 711888595 711888704 1.600000e-26 132.0
41 TraesCS5D01G210500 chr7B 87.387 111 14 0 2187 2297 712079610 712079500 2.070000e-25 128.0
42 TraesCS5D01G210500 chr3B 74.373 359 65 19 2663 3008 546916911 546917255 2.070000e-25 128.0
43 TraesCS5D01G210500 chr3B 75.081 309 55 17 2663 2960 18300883 18300586 2.680000e-24 124.0
44 TraesCS5D01G210500 chr3B 90.385 52 3 1 2869 2918 19096759 19096708 4.580000e-07 67.6
45 TraesCS5D01G210500 chr1B 80.000 150 19 7 2358 2506 562512245 562512384 4.520000e-17 100.0
46 TraesCS5D01G210500 chr1A 87.500 64 7 1 2341 2403 508045097 508045034 9.850000e-09 73.1
47 TraesCS5D01G210500 chr1D 100.000 34 0 0 2624 2657 349469132 349469165 5.930000e-06 63.9
48 TraesCS5D01G210500 chr3D 86.207 58 6 2 2374 2430 111760543 111760487 2.130000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G210500 chr5D 318882653 318889729 7076 False 4060.333333 5897 100.000000 1 7077 3 chr5D.!!$F2 7076
1 TraesCS5D01G210500 chr5D 321377085 321378448 1363 True 2100.000000 2100 94.469000 4604 5969 1 chr5D.!!$R1 1365
2 TraesCS5D01G210500 chr5D 321383425 321387158 3733 True 865.500000 1943 88.029000 9 4606 4 chr5D.!!$R2 4597
3 TraesCS5D01G210500 chr5A 415567818 415573646 5828 True 1498.000000 4039 84.277500 9 6413 4 chr5A.!!$R1 6404
4 TraesCS5D01G210500 chr5A 413231201 413237605 6404 False 1493.250000 3360 85.923500 219 5968 4 chr5A.!!$F2 5749
5 TraesCS5D01G210500 chr5B 368694203 368698200 3997 False 1395.000000 1633 89.814000 9 2328 2 chr5B.!!$F1 2319
6 TraesCS5D01G210500 chr5B 368718640 368723077 4437 False 1102.666667 2785 87.712000 3786 7077 3 chr5B.!!$F2 3291
7 TraesCS5D01G210500 chr5B 372164569 372169589 5020 True 989.333333 3452 89.758333 55 5960 6 chr5B.!!$R1 5905
8 TraesCS5D01G210500 chr7A 711597700 711599816 2116 False 292.333333 560 84.127667 1184 5566 3 chr7A.!!$F1 4382
9 TraesCS5D01G210500 chr7D 617822331 617824520 2189 True 337.000000 503 81.365500 1174 5566 2 chr7D.!!$R1 4392
10 TraesCS5D01G210500 chr6D 276588372 276589020 648 True 274.000000 274 75.301000 4935 5566 1 chr6D.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 1261 0.031178 GCGCCATGCTAATTTCCCAG 59.969 55.0 0.00 0.00 41.73 4.45 F
817 1700 0.250727 CCGATGGGTGTTGTCCTTGT 60.251 55.0 0.00 0.00 0.00 3.16 F
2332 5124 0.320374 ATCTTGACGCCTTTCGGTCA 59.680 50.0 0.00 0.00 43.86 4.02 F
3671 7114 0.032316 TGAGCAGAGGAGAGCCATCT 60.032 55.0 0.00 0.00 38.98 2.90 F
4114 9002 0.179121 TGATCATGTCGGCGTGGTAC 60.179 55.0 9.78 0.00 32.65 3.34 F
4775 10018 0.471022 TACCATGATAGGAGGCGCCA 60.471 55.0 31.54 8.23 40.02 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 5826 0.255890 AGCGGAATACCAATGCCACT 59.744 50.000 0.00 0.0 35.59 4.00 R
2472 5827 1.102978 AAGCGGAATACCAATGCCAC 58.897 50.000 0.00 0.0 35.59 5.01 R
4149 9386 1.681166 GCATCTTCCATGTCACCAGCT 60.681 52.381 0.00 0.0 0.00 4.24 R
4568 9811 0.179000 ATCCTGACATCCAGTTCGCC 59.821 55.000 0.00 0.0 41.33 5.54 R
5905 11205 1.810031 CGCATCCATCATTGGTACCGT 60.810 52.381 7.57 0.0 44.06 4.83 R
6372 11740 1.442526 GGTGCAATGGAGAGATGCGG 61.443 60.000 0.00 0.0 42.91 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.183549 TCGACCCCTCTTAGCAAGTC 58.816 55.000 0.00 0.00 0.00 3.01
47 48 7.050970 TCTTAGCAAGTCAGTTAGAGTTTGA 57.949 36.000 0.00 0.00 37.81 2.69
106 113 4.157656 GCTGACATCAGAGCTACTATAGGG 59.842 50.000 13.15 0.00 46.59 3.53
192 208 9.657419 TGCTAGATGGTGTATCATGTATTTATG 57.343 33.333 0.00 0.00 38.31 1.90
242 430 2.426522 ACTTCGTCCAATGTGACCATG 58.573 47.619 0.00 0.00 31.35 3.66
252 442 1.378531 TGTGACCATGATTAAGCGCC 58.621 50.000 2.29 0.00 0.00 6.53
280 473 2.160205 GAAAACTGTACTGCCCTTCCC 58.840 52.381 0.00 0.00 0.00 3.97
366 564 2.232208 AGCCTTAATTGCCACAGCTTTC 59.768 45.455 0.00 0.00 40.80 2.62
442 1219 4.091549 TCCCTTGTACGGAATAGTCAACT 58.908 43.478 0.00 0.00 0.00 3.16
473 1261 0.031178 GCGCCATGCTAATTTCCCAG 59.969 55.000 0.00 0.00 41.73 4.45
486 1278 0.918258 TTCCCAGCCATATGTGCTCA 59.082 50.000 13.73 0.00 36.81 4.26
504 1297 0.946221 CAGTCCAGCGCTTCGTTCTT 60.946 55.000 7.50 0.00 0.00 2.52
506 1303 1.069090 TCCAGCGCTTCGTTCTTGT 59.931 52.632 7.50 0.00 0.00 3.16
514 1311 3.181520 GCGCTTCGTTCTTGTATGATGTT 60.182 43.478 0.00 0.00 0.00 2.71
515 1312 4.032445 GCGCTTCGTTCTTGTATGATGTTA 59.968 41.667 0.00 0.00 0.00 2.41
517 1314 6.074516 GCGCTTCGTTCTTGTATGATGTTATA 60.075 38.462 0.00 0.00 0.00 0.98
518 1315 7.359264 GCGCTTCGTTCTTGTATGATGTTATAT 60.359 37.037 0.00 0.00 0.00 0.86
520 1317 7.742089 GCTTCGTTCTTGTATGATGTTATATGC 59.258 37.037 0.00 0.00 0.00 3.14
522 1319 8.655651 TCGTTCTTGTATGATGTTATATGCAA 57.344 30.769 0.00 0.00 0.00 4.08
524 1321 9.882996 CGTTCTTGTATGATGTTATATGCAATT 57.117 29.630 0.00 0.00 30.47 2.32
528 1325 9.750882 CTTGTATGATGTTATATGCAATTCTCG 57.249 33.333 0.00 0.00 30.47 4.04
529 1326 9.487790 TTGTATGATGTTATATGCAATTCTCGA 57.512 29.630 0.00 0.00 0.00 4.04
530 1327 8.925700 TGTATGATGTTATATGCAATTCTCGAC 58.074 33.333 0.00 0.00 0.00 4.20
532 1329 8.613060 ATGATGTTATATGCAATTCTCGACTT 57.387 30.769 0.00 0.00 0.00 3.01
535 1332 7.700322 TGTTATATGCAATTCTCGACTTCTC 57.300 36.000 0.00 0.00 0.00 2.87
538 1372 3.842732 TGCAATTCTCGACTTCTCGTA 57.157 42.857 0.00 0.00 41.02 3.43
544 1378 1.400846 TCTCGACTTCTCGTATGGTGC 59.599 52.381 0.00 0.00 41.02 5.01
574 1414 3.841643 CATGATGTCCTTGGCAAAACTC 58.158 45.455 0.00 3.81 0.00 3.01
583 1423 2.004583 TGGCAAAACTCGGAGATACG 57.995 50.000 12.86 0.00 33.89 3.06
586 1426 1.060698 GCAAAACTCGGAGATACGTGC 59.939 52.381 12.86 9.58 33.89 5.34
709 1592 0.763652 CCATCCATCCAGAGTCCAGG 59.236 60.000 0.00 0.00 0.00 4.45
817 1700 0.250727 CCGATGGGTGTTGTCCTTGT 60.251 55.000 0.00 0.00 0.00 3.16
818 1701 1.156736 CGATGGGTGTTGTCCTTGTC 58.843 55.000 0.00 0.00 0.00 3.18
846 1729 1.270907 GTCTCCTCTTCCTCCTGCAA 58.729 55.000 0.00 0.00 0.00 4.08
853 1737 2.167487 CTCTTCCTCCTGCAACTACCTC 59.833 54.545 0.00 0.00 0.00 3.85
904 1789 1.734477 CCAGTTCCAGTCGCACTCG 60.734 63.158 0.00 0.00 0.00 4.18
921 1806 2.487372 ACTCGAGGAAGACGTAGAAACC 59.513 50.000 18.41 0.00 0.00 3.27
934 1819 1.449778 GAAACCAGCCTACCTCCGC 60.450 63.158 0.00 0.00 0.00 5.54
936 1821 4.753662 ACCAGCCTACCTCCGCGA 62.754 66.667 8.23 0.00 0.00 5.87
941 1826 2.758737 CCTACCTCCGCGACCCTT 60.759 66.667 8.23 0.00 0.00 3.95
1050 1937 4.026744 AGAAGGAGGATCGATCAAGTGAA 58.973 43.478 25.93 0.00 34.37 3.18
1352 2250 6.073548 GCATCAACATGAGTAAGCATACTACC 60.074 42.308 0.76 0.00 42.47 3.18
1353 2251 6.538945 TCAACATGAGTAAGCATACTACCA 57.461 37.500 0.76 0.00 42.47 3.25
1354 2252 6.338146 TCAACATGAGTAAGCATACTACCAC 58.662 40.000 0.76 0.00 42.47 4.16
1373 2271 4.836736 ACCACTACTTGTTTACCTCTGCTA 59.163 41.667 0.00 0.00 0.00 3.49
1392 2291 9.457110 CTCTGCTATGAAAATACTGTACTGTAG 57.543 37.037 16.42 5.08 0.00 2.74
1455 2362 3.073798 TCCAATCAAAACTCCCTGCACTA 59.926 43.478 0.00 0.00 0.00 2.74
1462 4021 6.065374 TCAAAACTCCCTGCACTACAAATTA 58.935 36.000 0.00 0.00 0.00 1.40
1490 4068 9.961264 TTTTGGGAGGTTAATTTAAGTTTTGTT 57.039 25.926 0.00 0.00 0.00 2.83
1492 4070 8.541899 TGGGAGGTTAATTTAAGTTTTGTTCT 57.458 30.769 0.00 0.00 0.00 3.01
1493 4071 8.417884 TGGGAGGTTAATTTAAGTTTTGTTCTG 58.582 33.333 0.00 0.00 0.00 3.02
1495 4073 9.459640 GGAGGTTAATTTAAGTTTTGTTCTGTC 57.540 33.333 0.00 0.00 0.00 3.51
1504 4082 6.983474 AAGTTTTGTTCTGTCCATTTTTGG 57.017 33.333 0.00 0.00 0.00 3.28
1505 4083 5.427378 AGTTTTGTTCTGTCCATTTTTGGG 58.573 37.500 0.00 0.00 0.00 4.12
1516 4133 5.069781 TGTCCATTTTTGGGAGTACCTTTTG 59.930 40.000 0.00 0.00 41.11 2.44
1933 4587 2.667199 TCCAGCTCGTCGACGACA 60.667 61.111 34.97 17.57 44.22 4.35
1939 4593 1.443702 CTCGTCGACGACAATGCCA 60.444 57.895 34.97 13.76 44.22 4.92
2016 4674 0.752376 CCTACCACTCTCTCGGTCCC 60.752 65.000 0.00 0.00 36.69 4.46
2024 4682 1.749638 CTCTCGGTCCCGCAGTAGT 60.750 63.158 0.00 0.00 39.59 2.73
2026 4684 1.139095 CTCGGTCCCGCAGTAGTTC 59.861 63.158 0.00 0.00 39.59 3.01
2027 4685 1.592400 CTCGGTCCCGCAGTAGTTCA 61.592 60.000 0.00 0.00 39.59 3.18
2028 4686 0.968901 TCGGTCCCGCAGTAGTTCAT 60.969 55.000 0.00 0.00 39.59 2.57
2029 4687 0.806102 CGGTCCCGCAGTAGTTCATG 60.806 60.000 0.00 0.00 0.00 3.07
2030 4688 1.090052 GGTCCCGCAGTAGTTCATGC 61.090 60.000 0.00 0.00 39.09 4.06
2060 4807 4.736759 GCAAGATGGATTCAGCATTTCTGG 60.737 45.833 0.00 0.00 43.06 3.86
2115 4881 6.033341 GGATGTAGAGATGATCGATACAAGC 58.967 44.000 13.93 10.25 30.21 4.01
2170 4957 7.709947 ACATTGTATTGTGATTGTGATGGATC 58.290 34.615 0.00 0.00 0.00 3.36
2227 5019 4.408276 AGTCTAAGAAGGCAGTGACAGTA 58.592 43.478 0.00 0.00 0.00 2.74
2332 5124 0.320374 ATCTTGACGCCTTTCGGTCA 59.680 50.000 0.00 0.00 43.86 4.02
2348 5691 7.713507 CCTTTCGGTCAACCATATAATAGTGAA 59.286 37.037 0.00 0.00 35.14 3.18
2349 5692 9.104965 CTTTCGGTCAACCATATAATAGTGAAA 57.895 33.333 0.00 0.00 35.14 2.69
2412 5757 8.281212 AGTGGCATTGGTATTTTACTCTTAAG 57.719 34.615 0.00 0.00 0.00 1.85
2413 5758 7.339466 AGTGGCATTGGTATTTTACTCTTAAGG 59.661 37.037 1.85 0.00 0.00 2.69
2414 5759 7.338449 GTGGCATTGGTATTTTACTCTTAAGGA 59.662 37.037 1.85 0.00 0.00 3.36
2415 5760 7.891183 TGGCATTGGTATTTTACTCTTAAGGAA 59.109 33.333 1.85 0.00 0.00 3.36
2419 5774 9.682465 ATTGGTATTTTACTCTTAAGGAAGACC 57.318 33.333 1.85 7.67 36.75 3.85
2420 5775 7.325694 TGGTATTTTACTCTTAAGGAAGACCG 58.674 38.462 1.85 0.00 36.75 4.79
2486 5841 8.947055 AAAATGAATTAGTGGCATTGGTATTC 57.053 30.769 0.00 0.00 32.96 1.75
2487 5842 6.655078 ATGAATTAGTGGCATTGGTATTCC 57.345 37.500 0.00 0.00 0.00 3.01
2494 5849 3.129638 GTGGCATTGGTATTCCGCTTTAA 59.870 43.478 0.00 0.00 36.30 1.52
2496 5851 4.142271 TGGCATTGGTATTCCGCTTTAAAG 60.142 41.667 11.02 11.02 36.30 1.85
2499 5854 6.096695 GCATTGGTATTCCGCTTTAAAGAAA 58.903 36.000 19.48 9.54 36.30 2.52
2501 5856 7.201435 GCATTGGTATTCCGCTTTAAAGAAAAG 60.201 37.037 19.48 6.45 46.29 2.27
2503 5858 7.513371 TGGTATTCCGCTTTAAAGAAAAGAA 57.487 32.000 19.48 13.88 45.38 2.52
2506 5861 9.251792 GGTATTCCGCTTTAAAGAAAAGAAAAA 57.748 29.630 19.48 5.65 46.44 1.94
2545 5900 5.070770 ACAGAGACAAAAATTGCACACAA 57.929 34.783 0.00 0.00 40.87 3.33
2560 5915 6.386897 TGCACACAATTTACGCATAATTTG 57.613 33.333 5.81 5.81 37.53 2.32
2561 5916 7.883177 ATTGCACACAATTTACGCATAATTTGC 60.883 33.333 6.99 5.63 44.21 3.68
2601 5956 8.978874 TGCAAGAACCAACATATAATAGTGAT 57.021 30.769 0.00 0.00 0.00 3.06
2643 5999 7.979444 TTTGTAAGAAGGAATGAGTTAGTGG 57.021 36.000 0.00 0.00 0.00 4.00
2859 6231 9.748708 TTGTGGAGATTCATAAAAAGAAGTTTG 57.251 29.630 0.00 0.00 0.00 2.93
2860 6232 8.359642 TGTGGAGATTCATAAAAAGAAGTTTGG 58.640 33.333 0.00 0.00 0.00 3.28
2861 6233 8.360390 GTGGAGATTCATAAAAAGAAGTTTGGT 58.640 33.333 0.00 0.00 0.00 3.67
2893 6265 9.816354 AAATGAATTAGTGGCATTGTTATTACC 57.184 29.630 0.00 0.00 32.96 2.85
2894 6266 8.766994 ATGAATTAGTGGCATTGTTATTACCT 57.233 30.769 0.00 0.00 0.00 3.08
2994 6368 5.235186 CGACATTGGTATAGCCTTGAAGAAG 59.765 44.000 0.00 0.00 38.35 2.85
3000 6374 6.407202 TGGTATAGCCTTGAAGAAGAAAGAC 58.593 40.000 0.00 0.00 38.35 3.01
3003 6377 7.554476 GGTATAGCCTTGAAGAAGAAAGACAAT 59.446 37.037 0.00 0.00 0.00 2.71
3004 6378 5.702349 AGCCTTGAAGAAGAAAGACAATG 57.298 39.130 0.00 0.00 0.00 2.82
3005 6379 5.380043 AGCCTTGAAGAAGAAAGACAATGA 58.620 37.500 0.00 0.00 0.00 2.57
3006 6380 5.829924 AGCCTTGAAGAAGAAAGACAATGAA 59.170 36.000 0.00 0.00 0.00 2.57
3007 6381 6.322201 AGCCTTGAAGAAGAAAGACAATGAAA 59.678 34.615 0.00 0.00 0.00 2.69
3008 6382 7.015001 AGCCTTGAAGAAGAAAGACAATGAAAT 59.985 33.333 0.00 0.00 0.00 2.17
3009 6383 8.299570 GCCTTGAAGAAGAAAGACAATGAAATA 58.700 33.333 0.00 0.00 0.00 1.40
3039 6413 9.899661 ACTTATAATAACTTGCACACCATCTTA 57.100 29.630 0.00 0.00 0.00 2.10
3057 6441 9.918630 ACCATCTTATGCTGATTTTTAATATGC 57.081 29.630 0.00 0.00 0.00 3.14
3091 6475 9.979578 AAACATATTGCATTTTTCACACTCTAA 57.020 25.926 0.00 0.00 0.00 2.10
3093 6477 9.577110 ACATATTGCATTTTTCACACTCTAATG 57.423 29.630 0.00 0.00 0.00 1.90
3094 6478 9.577110 CATATTGCATTTTTCACACTCTAATGT 57.423 29.630 0.00 0.00 0.00 2.71
3124 6508 7.165460 ACACACATACTGTATAGTACTTGCA 57.835 36.000 0.00 0.00 41.92 4.08
3125 6509 7.033791 ACACACATACTGTATAGTACTTGCAC 58.966 38.462 0.00 0.00 41.92 4.57
3127 6511 5.685954 CACATACTGTATAGTACTTGCACGG 59.314 44.000 0.00 4.67 41.92 4.94
3132 6516 5.009410 ACTGTATAGTACTTGCACGGATACC 59.991 44.000 0.00 0.00 34.74 2.73
3152 6536 3.256631 ACCTTTTCACTCATCCAACATGC 59.743 43.478 0.00 0.00 0.00 4.06
3185 6569 4.260011 CCCACGTTGAAAAATGAAAAACCG 60.260 41.667 0.00 0.00 0.00 4.44
3187 6571 5.477136 CACGTTGAAAAATGAAAAACCGAC 58.523 37.500 0.00 0.00 0.00 4.79
3189 6573 6.469595 CACGTTGAAAAATGAAAAACCGACTA 59.530 34.615 0.00 0.00 0.00 2.59
3191 6575 7.541437 ACGTTGAAAAATGAAAAACCGACTAAA 59.459 29.630 0.00 0.00 0.00 1.85
3435 6819 5.594926 CTCAAACAGAGGCAAGTCAAAAAT 58.405 37.500 0.00 0.00 40.84 1.82
3436 6820 5.976458 TCAAACAGAGGCAAGTCAAAAATT 58.024 33.333 0.00 0.00 0.00 1.82
3437 6821 7.106439 TCAAACAGAGGCAAGTCAAAAATTA 57.894 32.000 0.00 0.00 0.00 1.40
3439 6823 6.715347 AACAGAGGCAAGTCAAAAATTAGT 57.285 33.333 0.00 0.00 0.00 2.24
3440 6824 6.715347 ACAGAGGCAAGTCAAAAATTAGTT 57.285 33.333 0.00 0.00 0.00 2.24
3441 6825 7.112452 ACAGAGGCAAGTCAAAAATTAGTTT 57.888 32.000 0.00 0.00 0.00 2.66
3442 6826 8.232913 ACAGAGGCAAGTCAAAAATTAGTTTA 57.767 30.769 0.00 0.00 0.00 2.01
3443 6827 8.691797 ACAGAGGCAAGTCAAAAATTAGTTTAA 58.308 29.630 0.00 0.00 0.00 1.52
3444 6828 9.185192 CAGAGGCAAGTCAAAAATTAGTTTAAG 57.815 33.333 0.00 0.00 0.00 1.85
3447 6831 8.360390 AGGCAAGTCAAAAATTAGTTTAAGAGG 58.640 33.333 0.00 0.00 0.00 3.69
3448 6832 7.116376 GGCAAGTCAAAAATTAGTTTAAGAGGC 59.884 37.037 0.00 0.00 0.00 4.70
3451 6835 8.422577 AGTCAAAAATTAGTTTAAGAGGCCAT 57.577 30.769 5.01 0.00 0.00 4.40
3459 6843 9.923143 AATTAGTTTAAGAGGCCATAAAACAAC 57.077 29.630 18.99 8.32 33.52 3.32
3463 6883 8.261522 AGTTTAAGAGGCCATAAAACAACAAAA 58.738 29.630 18.99 0.00 33.52 2.44
3465 6885 5.213891 AGAGGCCATAAAACAACAAAAGG 57.786 39.130 5.01 0.00 0.00 3.11
3468 6888 5.995446 AGGCCATAAAACAACAAAAGGAAA 58.005 33.333 5.01 0.00 0.00 3.13
3494 6914 7.504924 AATAACACGGATCTTGACAAAAGAA 57.495 32.000 0.00 0.00 0.00 2.52
3495 6915 7.687941 ATAACACGGATCTTGACAAAAGAAT 57.312 32.000 0.00 0.00 0.00 2.40
3496 6916 5.613358 ACACGGATCTTGACAAAAGAATC 57.387 39.130 0.00 0.00 0.00 2.52
3498 6918 5.530915 ACACGGATCTTGACAAAAGAATCAA 59.469 36.000 0.00 0.00 33.82 2.57
3499 6919 6.207417 ACACGGATCTTGACAAAAGAATCAAT 59.793 34.615 0.00 0.00 34.43 2.57
3500 6920 7.390440 ACACGGATCTTGACAAAAGAATCAATA 59.610 33.333 0.00 0.00 34.43 1.90
3501 6921 7.907045 CACGGATCTTGACAAAAGAATCAATAG 59.093 37.037 0.00 0.00 34.43 1.73
3502 6922 7.607991 ACGGATCTTGACAAAAGAATCAATAGT 59.392 33.333 0.00 0.00 34.43 2.12
3503 6923 8.119226 CGGATCTTGACAAAAGAATCAATAGTC 58.881 37.037 0.00 0.00 34.43 2.59
3520 6940 8.561738 TCAATAGTCAGAAAATGGACTTAACC 57.438 34.615 0.00 0.00 41.40 2.85
3544 6964 9.594478 ACCAAATTTAAAAACCAGACAACTTAG 57.406 29.630 0.00 0.00 0.00 2.18
3545 6965 9.810545 CCAAATTTAAAAACCAGACAACTTAGA 57.189 29.630 0.00 0.00 0.00 2.10
3550 6970 8.891671 TTAAAAACCAGACAACTTAGACGTAT 57.108 30.769 0.00 0.00 0.00 3.06
3551 6971 9.979578 TTAAAAACCAGACAACTTAGACGTATA 57.020 29.630 0.00 0.00 0.00 1.47
3552 6972 7.880059 AAAACCAGACAACTTAGACGTATAC 57.120 36.000 0.00 0.00 0.00 1.47
3553 6973 6.830873 AACCAGACAACTTAGACGTATACT 57.169 37.500 0.56 0.00 0.00 2.12
3562 6982 8.786898 ACAACTTAGACGTATACTGAAGTGTTA 58.213 33.333 0.56 0.00 0.00 2.41
3602 7025 8.630054 AGTTAGTAAAACTGCCACATTTCATA 57.370 30.769 0.00 0.00 0.00 2.15
3671 7114 0.032316 TGAGCAGAGGAGAGCCATCT 60.032 55.000 0.00 0.00 38.98 2.90
3794 7243 3.693382 TATGCACCACGACTCGCCG 62.693 63.158 0.00 0.00 0.00 6.46
3996 7451 3.305950 GGTATGTGCAGGCATTTCAAACA 60.306 43.478 0.00 0.00 0.00 2.83
4114 9002 0.179121 TGATCATGTCGGCGTGGTAC 60.179 55.000 9.78 0.00 32.65 3.34
4149 9386 3.874383 TGATGGTTTTGTCAGGAGGAA 57.126 42.857 0.00 0.00 0.00 3.36
4281 9518 3.681835 GACCTGGCCGACGTGTCT 61.682 66.667 0.00 0.00 0.00 3.41
4293 9530 3.043586 CGACGTGTCTATGATGGTAAGC 58.956 50.000 0.00 0.00 0.00 3.09
4306 9549 7.798596 ATGATGGTAAGCTTCTGAATACAAG 57.201 36.000 0.00 0.00 0.00 3.16
4332 9575 3.686241 TGAGATTGGTTTGCTTCGATCAG 59.314 43.478 0.00 0.00 0.00 2.90
4378 9621 0.614812 ATTTTGATTGGGTGCAGGCC 59.385 50.000 0.00 0.00 0.00 5.19
4411 9654 2.364973 TCCTACCATGGCGAGGCA 60.365 61.111 23.23 12.61 0.00 4.75
4517 9760 3.819337 CGAGAAGATACGGGAGGTTGATA 59.181 47.826 0.00 0.00 0.00 2.15
4568 9811 4.457496 ACTCAGGGCGCGTGATGG 62.457 66.667 8.43 4.25 0.00 3.51
4707 9950 4.639755 TGATCAAAGTGTGAGTTTCTTGCA 59.360 37.500 0.00 0.00 40.43 4.08
4719 9962 3.055891 AGTTTCTTGCAGCTTGGTTTGTT 60.056 39.130 0.00 0.00 0.00 2.83
4775 10018 0.471022 TACCATGATAGGAGGCGCCA 60.471 55.000 31.54 8.23 40.02 5.69
5143 10410 3.700109 CTCCTGGAGGACGAGCAA 58.300 61.111 16.19 0.00 39.78 3.91
5303 10582 2.203788 TGGGCGTGGTCCTTCTCT 60.204 61.111 0.00 0.00 0.00 3.10
5905 11205 1.899437 CGAGGCCTAGCACCTTCCAA 61.899 60.000 4.42 0.00 37.77 3.53
5919 11219 2.682856 CCTTCCAACGGTACCAATGATG 59.317 50.000 13.54 0.61 0.00 3.07
5950 11254 7.812191 CGAAATTTAGATTGTTCCAACCATGAA 59.188 33.333 0.00 0.00 0.00 2.57
5991 11295 8.690680 AAAACGTTTATGTGTTTGAAAAGCTA 57.309 26.923 15.03 0.00 38.26 3.32
6009 11373 9.617975 GAAAAGCTATATAAAAGATCACATGGC 57.382 33.333 0.00 0.00 0.00 4.40
6021 11385 2.250031 TCACATGGCTTTGCTTCCAAT 58.750 42.857 0.00 0.00 35.75 3.16
6048 11412 5.045869 TGTTCTTTGTGTCCTTATAGAGGGG 60.046 44.000 0.00 0.00 46.31 4.79
6063 11427 9.853177 CTTATAGAGGGGAATGTACAAAGAAAT 57.147 33.333 0.00 0.00 0.00 2.17
6066 11430 3.769300 AGGGGAATGTACAAAGAAATGCC 59.231 43.478 0.00 0.00 0.00 4.40
6073 11437 7.174772 GGAATGTACAAAGAAATGCCCAATTTT 59.825 33.333 0.00 0.00 38.64 1.82
6082 11446 6.346096 AGAAATGCCCAATTTTCATGATGAG 58.654 36.000 0.00 0.00 38.64 2.90
6086 11450 4.080807 TGCCCAATTTTCATGATGAGCATT 60.081 37.500 0.00 0.00 34.15 3.56
6111 11475 2.905075 TGACCAATAGAGGATTGCACG 58.095 47.619 0.00 0.00 43.25 5.34
6123 11487 0.881118 ATTGCACGGTCGATTTTGCT 59.119 45.000 13.97 0.00 35.91 3.91
6149 11513 3.461061 TGAGCAATTCTAGCAGATTCGG 58.539 45.455 0.00 0.00 0.00 4.30
6195 11559 3.005367 ACAAAAGGACGATCGCCAAAAAT 59.995 39.130 24.07 1.87 0.00 1.82
6218 11582 1.482182 TGCAGTCTGACGCATAATCCT 59.518 47.619 18.47 0.00 31.95 3.24
6227 11591 5.301805 TCTGACGCATAATCCTGATAACTGA 59.698 40.000 0.00 0.00 0.00 3.41
6246 11610 3.202906 TGATGCTTACCGCTTGGAATAC 58.797 45.455 0.00 0.00 40.11 1.89
6261 11625 0.957362 AATACGCGGGTAGCTACCTC 59.043 55.000 35.80 26.79 45.72 3.85
6284 11648 7.222611 CCTCAAAAACGATCAACAACTCAAAAT 59.777 33.333 0.00 0.00 0.00 1.82
6287 11651 9.833894 CAAAAACGATCAACAACTCAAAATAAG 57.166 29.630 0.00 0.00 0.00 1.73
6289 11653 9.450807 AAAACGATCAACAACTCAAAATAAGAG 57.549 29.630 0.00 0.00 39.04 2.85
6291 11655 8.553459 ACGATCAACAACTCAAAATAAGAGAT 57.447 30.769 0.00 0.00 36.91 2.75
6337 11703 2.126424 GTGGGACTCACGACTCGC 60.126 66.667 0.00 0.00 36.56 5.03
6340 11706 2.643272 GGACTCACGACTCGCACA 59.357 61.111 0.00 0.00 0.00 4.57
6342 11708 0.450583 GGACTCACGACTCGCACATA 59.549 55.000 0.00 0.00 0.00 2.29
6359 11725 8.684611 TCGCACATATGTGAGACACCTTTTCT 62.685 42.308 34.65 0.00 46.99 2.52
6362 11730 7.482169 ACATATGTGAGACACCTTTTCTCTA 57.518 36.000 7.78 0.00 40.30 2.43
6372 11740 6.147985 AGACACCTTTTCTCTATTTTCTTCGC 59.852 38.462 0.00 0.00 0.00 4.70
6390 11758 2.020131 CCGCATCTCTCCATTGCAC 58.980 57.895 0.00 0.00 36.15 4.57
6392 11760 1.442526 CGCATCTCTCCATTGCACCC 61.443 60.000 0.00 0.00 36.15 4.61
6780 12148 3.087666 TATGCATGCACGCCTCCGA 62.088 57.895 25.37 0.00 38.29 4.55
6830 12198 3.148279 CCCCGGTCGAGGAAGGAG 61.148 72.222 0.00 0.00 0.00 3.69
6831 12199 2.044252 CCCGGTCGAGGAAGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
6837 12205 1.893801 GGTCGAGGAAGGAGAAGACAA 59.106 52.381 0.00 0.00 0.00 3.18
6845 12213 0.832135 AGGAGAAGACAAGCCCACGA 60.832 55.000 0.00 0.00 0.00 4.35
6847 12215 0.318762 GAGAAGACAAGCCCACGACT 59.681 55.000 0.00 0.00 0.00 4.18
6848 12216 0.034059 AGAAGACAAGCCCACGACTG 59.966 55.000 0.00 0.00 0.00 3.51
6850 12218 2.031163 GACAAGCCCACGACTGCT 59.969 61.111 0.00 0.00 40.17 4.24
6851 12219 2.029844 GACAAGCCCACGACTGCTC 61.030 63.158 0.00 0.00 36.66 4.26
6875 12260 2.035442 GGAGAGGCGTTGCTTGTCC 61.035 63.158 1.43 1.43 40.41 4.02
6883 12268 1.885871 GTTGCTTGTCCTCCATGGC 59.114 57.895 6.96 0.00 35.26 4.40
6897 12282 3.545574 TGGCGACAGTGAGCACCA 61.546 61.111 14.96 5.75 35.01 4.17
6898 12283 3.044305 GGCGACAGTGAGCACCAC 61.044 66.667 14.96 1.51 46.03 4.16
6899 12284 3.044305 GCGACAGTGAGCACCACC 61.044 66.667 0.00 0.00 46.87 4.61
6900 12285 2.734723 CGACAGTGAGCACCACCG 60.735 66.667 0.00 0.00 46.87 4.94
6901 12286 2.734591 GACAGTGAGCACCACCGA 59.265 61.111 0.00 0.00 46.87 4.69
6902 12287 1.664965 GACAGTGAGCACCACCGAC 60.665 63.158 0.00 0.00 46.87 4.79
6903 12288 2.088674 GACAGTGAGCACCACCGACT 62.089 60.000 0.00 0.00 46.87 4.18
6904 12289 1.665916 CAGTGAGCACCACCGACTG 60.666 63.158 5.75 0.00 46.87 3.51
6905 12290 3.044305 GTGAGCACCACCGACTGC 61.044 66.667 0.00 0.00 39.86 4.40
6906 12291 3.233980 TGAGCACCACCGACTGCT 61.234 61.111 0.00 0.00 46.63 4.24
6908 12293 4.008933 AGCACCACCGACTGCTCC 62.009 66.667 0.00 0.00 39.66 4.70
6910 12295 3.314331 CACCACCGACTGCTCCCT 61.314 66.667 0.00 0.00 0.00 4.20
6911 12296 3.314331 ACCACCGACTGCTCCCTG 61.314 66.667 0.00 0.00 0.00 4.45
6912 12297 4.087892 CCACCGACTGCTCCCTGG 62.088 72.222 0.00 0.00 0.00 4.45
6913 12298 4.767255 CACCGACTGCTCCCTGGC 62.767 72.222 0.00 0.00 0.00 4.85
6916 12301 3.842923 CGACTGCTCCCTGGCGAT 61.843 66.667 0.00 0.00 43.29 4.58
6917 12302 2.202987 GACTGCTCCCTGGCGATG 60.203 66.667 0.00 0.00 34.52 3.84
6918 12303 4.479993 ACTGCTCCCTGGCGATGC 62.480 66.667 0.00 0.00 34.52 3.91
6946 12331 4.479993 ACTGCTCCCTGGCGATGC 62.480 66.667 0.00 0.00 34.52 3.91
6977 12362 0.037139 ATTGGCATGCACGCACAAAT 60.037 45.000 21.36 0.04 0.00 2.32
6978 12363 0.944788 TTGGCATGCACGCACAAATG 60.945 50.000 21.36 0.00 0.00 2.32
7007 12392 4.434725 CGCACACAACATACTTAGAGCAAG 60.435 45.833 0.00 0.00 40.38 4.01
7022 12407 0.608308 GCAAGTTTAGCGGTTCCCCT 60.608 55.000 0.00 0.00 0.00 4.79
7043 12428 6.946009 CCCCTAAAAGTTATGTTTGAGGAGAA 59.054 38.462 1.75 0.00 0.00 2.87
7058 12444 7.601705 TTGAGGAGAATTTTTCTGGTTTGAT 57.398 32.000 0.00 0.00 40.87 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.819632 GGGTCGATCGCCATGCTTT 60.820 57.895 23.67 0.00 0.00 3.51
4 5 2.203070 GGGTCGATCGCCATGCTT 60.203 61.111 23.67 0.00 0.00 3.91
5 6 4.241555 GGGGTCGATCGCCATGCT 62.242 66.667 23.67 0.00 46.70 3.79
113 120 3.572255 GCCAGGACACCAACATTTCTTTA 59.428 43.478 0.00 0.00 0.00 1.85
114 121 2.365293 GCCAGGACACCAACATTTCTTT 59.635 45.455 0.00 0.00 0.00 2.52
118 125 1.412343 GTTGCCAGGACACCAACATTT 59.588 47.619 0.00 0.00 38.85 2.32
242 430 0.800012 TCAAACCGTGGCGCTTAATC 59.200 50.000 7.64 0.00 0.00 1.75
252 442 3.359654 GCAGTACAGTTTTCAAACCGTG 58.640 45.455 0.00 0.00 39.71 4.94
268 458 1.229400 AAGGACGGGAAGGGCAGTA 60.229 57.895 0.00 0.00 0.00 2.74
272 462 3.978571 GAGCAAGGACGGGAAGGGC 62.979 68.421 0.00 0.00 0.00 5.19
280 473 2.492019 TCGATACATGAGCAAGGACG 57.508 50.000 0.00 0.00 0.00 4.79
366 564 6.923508 TCGACTTGCCTCATATACTAAACATG 59.076 38.462 0.00 0.00 0.00 3.21
442 1219 3.620419 ATGGCGCGTCATGAACCCA 62.620 57.895 27.73 13.17 0.00 4.51
473 1261 1.590932 CTGGACTGAGCACATATGGC 58.409 55.000 7.80 7.80 0.00 4.40
486 1278 0.946221 CAAGAACGAAGCGCTGGACT 60.946 55.000 12.58 8.80 0.00 3.85
504 1297 8.925700 GTCGAGAATTGCATATAACATCATACA 58.074 33.333 0.00 0.00 0.00 2.29
506 1303 9.710900 AAGTCGAGAATTGCATATAACATCATA 57.289 29.630 0.00 0.00 0.00 2.15
528 1325 2.535984 CGAATGCACCATACGAGAAGTC 59.464 50.000 0.00 0.00 0.00 3.01
529 1326 2.165641 TCGAATGCACCATACGAGAAGT 59.834 45.455 0.00 0.00 0.00 3.01
530 1327 2.809446 TCGAATGCACCATACGAGAAG 58.191 47.619 0.00 0.00 0.00 2.85
532 1329 2.742774 CATCGAATGCACCATACGAGA 58.257 47.619 0.00 0.00 36.49 4.04
544 1378 3.304458 CCAAGGACATCATGCATCGAATG 60.304 47.826 0.00 3.94 0.00 2.67
559 1398 0.875059 CTCCGAGTTTTGCCAAGGAC 59.125 55.000 0.00 0.00 0.00 3.85
574 1414 0.382758 CGTAGACGCACGTATCTCCG 60.383 60.000 0.00 0.00 37.16 4.63
583 1423 3.110178 GGCACACCGTAGACGCAC 61.110 66.667 0.00 0.00 38.18 5.34
817 1700 3.591527 AGGAAGAGGAGACAAGAGAGAGA 59.408 47.826 0.00 0.00 0.00 3.10
818 1701 3.947834 GAGGAAGAGGAGACAAGAGAGAG 59.052 52.174 0.00 0.00 0.00 3.20
846 1729 4.094476 TGCACCTAAAAGCTAGAGGTAGT 58.906 43.478 12.47 0.00 41.80 2.73
853 1737 2.012673 CTGCCTGCACCTAAAAGCTAG 58.987 52.381 0.00 0.00 0.00 3.42
887 1772 0.730834 CTCGAGTGCGACTGGAACTG 60.731 60.000 3.62 0.00 42.51 3.16
904 1789 2.608268 GCTGGTTTCTACGTCTTCCTC 58.392 52.381 0.00 0.00 0.00 3.71
921 1806 4.208686 GGTCGCGGAGGTAGGCTG 62.209 72.222 6.13 0.00 0.00 4.85
934 1819 3.119280 GGAGAAAGAGAGAGAAAGGGTCG 60.119 52.174 0.00 0.00 0.00 4.79
936 1821 3.178046 GGGAGAAAGAGAGAGAAAGGGT 58.822 50.000 0.00 0.00 0.00 4.34
939 1824 3.257127 ACGTGGGAGAAAGAGAGAGAAAG 59.743 47.826 0.00 0.00 0.00 2.62
940 1825 3.231818 ACGTGGGAGAAAGAGAGAGAAA 58.768 45.455 0.00 0.00 0.00 2.52
941 1826 2.820787 GACGTGGGAGAAAGAGAGAGAA 59.179 50.000 0.00 0.00 0.00 2.87
1004 1889 2.826777 ATCTTCCACAAGGGGCTGCG 62.827 60.000 0.00 0.00 37.22 5.18
1005 1890 1.000396 ATCTTCCACAAGGGGCTGC 60.000 57.895 0.00 0.00 37.22 5.25
1007 1892 1.005215 CTTGATCTTCCACAAGGGGCT 59.995 52.381 0.00 0.00 39.52 5.19
1008 1893 1.004745 TCTTGATCTTCCACAAGGGGC 59.995 52.381 0.00 0.00 42.27 5.80
1009 1894 2.573462 TCTCTTGATCTTCCACAAGGGG 59.427 50.000 0.00 0.00 42.67 4.79
1012 1897 5.157940 TCCTTCTCTTGATCTTCCACAAG 57.842 43.478 0.00 0.00 43.03 3.16
1013 1898 4.019860 CCTCCTTCTCTTGATCTTCCACAA 60.020 45.833 0.00 0.00 0.00 3.33
1014 1899 3.517100 CCTCCTTCTCTTGATCTTCCACA 59.483 47.826 0.00 0.00 0.00 4.17
1015 1900 3.772025 TCCTCCTTCTCTTGATCTTCCAC 59.228 47.826 0.00 0.00 0.00 4.02
1016 1901 4.066578 TCCTCCTTCTCTTGATCTTCCA 57.933 45.455 0.00 0.00 0.00 3.53
1019 1904 4.541705 TCGATCCTCCTTCTCTTGATCTT 58.458 43.478 0.00 0.00 31.76 2.40
1050 1937 1.361993 GATCGGTCGATGAGCTGCT 59.638 57.895 10.77 0.00 34.60 4.24
1082 1969 0.556258 TGGATCCTCCTTCCGAGCTA 59.444 55.000 14.23 0.00 37.46 3.32
1352 2250 6.631016 TCATAGCAGAGGTAAACAAGTAGTG 58.369 40.000 0.00 0.00 0.00 2.74
1353 2251 6.852420 TCATAGCAGAGGTAAACAAGTAGT 57.148 37.500 0.00 0.00 0.00 2.73
1354 2252 8.547967 TTTTCATAGCAGAGGTAAACAAGTAG 57.452 34.615 0.00 0.00 0.00 2.57
1392 2291 6.905609 GCTTGGCAAAACGAAGATAATAGTAC 59.094 38.462 0.00 0.00 36.26 2.73
1396 2295 4.729458 GCGCTTGGCAAAACGAAGATAATA 60.729 41.667 22.04 0.00 42.87 0.98
1397 2296 3.758300 CGCTTGGCAAAACGAAGATAAT 58.242 40.909 15.04 0.00 36.26 1.28
1481 4057 5.879777 CCCAAAAATGGACAGAACAAAACTT 59.120 36.000 0.00 0.00 0.00 2.66
1482 4058 5.188751 TCCCAAAAATGGACAGAACAAAACT 59.811 36.000 0.00 0.00 0.00 2.66
1486 4064 4.285863 ACTCCCAAAAATGGACAGAACAA 58.714 39.130 0.00 0.00 0.00 2.83
1490 4068 3.655777 AGGTACTCCCAAAAATGGACAGA 59.344 43.478 0.00 0.00 34.66 3.41
1492 4070 4.463050 AAGGTACTCCCAAAAATGGACA 57.537 40.909 0.00 0.00 38.49 4.02
1493 4071 5.510690 CCAAAAGGTACTCCCAAAAATGGAC 60.511 44.000 0.00 0.00 38.49 4.02
1495 4073 4.262851 CCCAAAAGGTACTCCCAAAAATGG 60.263 45.833 0.00 0.00 38.49 3.16
1516 4133 3.513662 ACACACAAAAAGCGTAAAACCC 58.486 40.909 0.00 0.00 0.00 4.11
1572 4194 1.225583 CGTCGTCAGTCCGTACGTC 60.226 63.158 15.21 7.04 39.99 4.34
1581 4203 2.338984 GGCAAGGTCGTCGTCAGT 59.661 61.111 0.00 0.00 0.00 3.41
1933 4587 2.590007 GAGCTCGGCGATGGCATT 60.590 61.111 20.93 3.51 42.47 3.56
2016 4674 1.909376 ACGTAGCATGAACTACTGCG 58.091 50.000 0.00 1.19 43.17 5.18
2030 4688 3.738282 GCTGAATCCATCTTGCTACGTAG 59.262 47.826 18.47 18.47 0.00 3.51
2060 4807 0.388649 CACACCGACACTAGAGGCAC 60.389 60.000 0.00 0.00 0.00 5.01
2115 4881 9.826574 ATCGATCTAGCTAGGAAATACTAGTAG 57.173 37.037 20.58 0.00 41.93 2.57
2145 4918 7.558807 AGATCCATCACAATCACAATACAATGT 59.441 33.333 0.00 0.00 0.00 2.71
2170 4957 0.904649 TCCTAGCATCCACACACCAG 59.095 55.000 0.00 0.00 0.00 4.00
2227 5019 4.660938 GGGTTGGCCTTCCGCTGT 62.661 66.667 3.32 0.00 37.74 4.40
2382 5727 9.255029 AGAGTAAAATACCAATGCCACTAATTT 57.745 29.630 0.00 0.00 0.00 1.82
2383 5728 8.823220 AGAGTAAAATACCAATGCCACTAATT 57.177 30.769 0.00 0.00 0.00 1.40
2384 5729 8.823220 AAGAGTAAAATACCAATGCCACTAAT 57.177 30.769 0.00 0.00 0.00 1.73
2385 5730 9.742144 TTAAGAGTAAAATACCAATGCCACTAA 57.258 29.630 0.00 0.00 0.00 2.24
2386 5731 9.391006 CTTAAGAGTAAAATACCAATGCCACTA 57.609 33.333 0.00 0.00 0.00 2.74
2387 5732 7.339466 CCTTAAGAGTAAAATACCAATGCCACT 59.661 37.037 3.36 0.00 0.00 4.00
2388 5733 7.338449 TCCTTAAGAGTAAAATACCAATGCCAC 59.662 37.037 3.36 0.00 0.00 5.01
2451 5806 9.838339 TGCCACTAATTCATTTTTCCTTAAAAA 57.162 25.926 0.00 0.00 45.89 1.94
2454 5809 9.434420 CAATGCCACTAATTCATTTTTCCTTAA 57.566 29.630 0.00 0.00 0.00 1.85
2455 5810 8.040132 CCAATGCCACTAATTCATTTTTCCTTA 58.960 33.333 0.00 0.00 0.00 2.69
2456 5811 6.880529 CCAATGCCACTAATTCATTTTTCCTT 59.119 34.615 0.00 0.00 0.00 3.36
2457 5812 6.013466 ACCAATGCCACTAATTCATTTTTCCT 60.013 34.615 0.00 0.00 0.00 3.36
2458 5813 6.172630 ACCAATGCCACTAATTCATTTTTCC 58.827 36.000 0.00 0.00 0.00 3.13
2459 5814 8.947055 ATACCAATGCCACTAATTCATTTTTC 57.053 30.769 0.00 0.00 0.00 2.29
2460 5815 9.382275 GAATACCAATGCCACTAATTCATTTTT 57.618 29.630 0.00 0.00 0.00 1.94
2461 5816 7.986889 GGAATACCAATGCCACTAATTCATTTT 59.013 33.333 0.00 0.00 35.97 1.82
2462 5817 7.500141 GGAATACCAATGCCACTAATTCATTT 58.500 34.615 0.00 0.00 35.97 2.32
2463 5818 6.239008 CGGAATACCAATGCCACTAATTCATT 60.239 38.462 0.00 0.00 35.59 2.57
2464 5819 5.241506 CGGAATACCAATGCCACTAATTCAT 59.758 40.000 0.00 0.00 35.59 2.57
2465 5820 4.578516 CGGAATACCAATGCCACTAATTCA 59.421 41.667 0.00 0.00 35.59 2.57
2466 5821 4.556699 GCGGAATACCAATGCCACTAATTC 60.557 45.833 0.00 0.00 35.59 2.17
2467 5822 3.317993 GCGGAATACCAATGCCACTAATT 59.682 43.478 0.00 0.00 35.59 1.40
2468 5823 2.884639 GCGGAATACCAATGCCACTAAT 59.115 45.455 0.00 0.00 35.59 1.73
2469 5824 2.092646 AGCGGAATACCAATGCCACTAA 60.093 45.455 0.00 0.00 35.59 2.24
2470 5825 1.488812 AGCGGAATACCAATGCCACTA 59.511 47.619 0.00 0.00 35.59 2.74
2471 5826 0.255890 AGCGGAATACCAATGCCACT 59.744 50.000 0.00 0.00 35.59 4.00
2472 5827 1.102978 AAGCGGAATACCAATGCCAC 58.897 50.000 0.00 0.00 35.59 5.01
2476 5831 8.026607 TCTTTTCTTTAAAGCGGAATACCAATG 58.973 33.333 10.51 0.00 42.47 2.82
2478 5833 7.513371 TCTTTTCTTTAAAGCGGAATACCAA 57.487 32.000 10.51 0.00 42.47 3.67
2516 5871 9.809096 TGTGCAATTTTTGTCTCTGTTTATTTA 57.191 25.926 0.00 0.00 0.00 1.40
2520 5875 6.625362 TGTGTGCAATTTTTGTCTCTGTTTA 58.375 32.000 0.00 0.00 0.00 2.01
2535 5890 7.454642 CAAATTATGCGTAAATTGTGTGCAAT 58.545 30.769 15.49 0.00 46.38 3.56
2834 6206 8.359642 CCAAACTTCTTTTTATGAATCTCCACA 58.640 33.333 0.00 0.00 0.00 4.17
2867 6239 9.816354 GGTAATAACAATGCCACTAATTCATTT 57.184 29.630 0.00 0.00 0.00 2.32
2964 6337 7.728148 TCAAGGCTATACCAATGTCGTTAATA 58.272 34.615 0.00 0.00 43.14 0.98
2970 6343 4.693283 TCTTCAAGGCTATACCAATGTCG 58.307 43.478 0.00 0.00 43.14 4.35
2983 6357 5.695851 TCATTGTCTTTCTTCTTCAAGGC 57.304 39.130 0.00 0.00 0.00 4.35
3021 6395 4.588899 AGCATAAGATGGTGTGCAAGTTA 58.411 39.130 0.00 0.00 39.92 2.24
3023 6397 3.077484 AGCATAAGATGGTGTGCAAGT 57.923 42.857 0.00 0.00 39.92 3.16
3067 6451 9.577110 CATTAGAGTGTGAAAAATGCAATATGT 57.423 29.630 0.00 0.00 0.00 2.29
3073 6457 9.979578 AAATTACATTAGAGTGTGAAAAATGCA 57.020 25.926 0.00 0.00 33.62 3.96
3080 6464 9.549078 TGTGTGTAAATTACATTAGAGTGTGAA 57.451 29.630 9.22 0.00 41.34 3.18
3081 6465 9.719355 ATGTGTGTAAATTACATTAGAGTGTGA 57.281 29.630 9.22 0.00 41.34 3.58
3124 6508 3.517901 TGGATGAGTGAAAAGGTATCCGT 59.482 43.478 0.00 0.00 37.49 4.69
3125 6509 4.137116 TGGATGAGTGAAAAGGTATCCG 57.863 45.455 0.00 0.00 37.49 4.18
3127 6511 6.678900 GCATGTTGGATGAGTGAAAAGGTATC 60.679 42.308 0.00 0.00 0.00 2.24
3132 6516 3.256383 TGGCATGTTGGATGAGTGAAAAG 59.744 43.478 0.00 0.00 0.00 2.27
3160 6544 4.737855 TTTTCATTTTTCAACGTGGGGA 57.262 36.364 0.00 0.00 0.00 4.81
3161 6545 4.034626 GGTTTTTCATTTTTCAACGTGGGG 59.965 41.667 0.00 0.00 0.00 4.96
3162 6546 4.260011 CGGTTTTTCATTTTTCAACGTGGG 60.260 41.667 0.00 0.00 0.00 4.61
3163 6547 4.563184 TCGGTTTTTCATTTTTCAACGTGG 59.437 37.500 0.00 0.00 0.00 4.94
3166 6550 5.942325 AGTCGGTTTTTCATTTTTCAACG 57.058 34.783 0.00 0.00 0.00 4.10
3414 6798 6.980397 ACTAATTTTTGACTTGCCTCTGTTTG 59.020 34.615 0.00 0.00 0.00 2.93
3418 6802 9.185192 CTTAAACTAATTTTTGACTTGCCTCTG 57.815 33.333 0.00 0.00 0.00 3.35
3421 6805 8.360390 CCTCTTAAACTAATTTTTGACTTGCCT 58.640 33.333 0.00 0.00 0.00 4.75
3435 6819 8.466617 TGTTGTTTTATGGCCTCTTAAACTAA 57.533 30.769 3.32 4.72 0.00 2.24
3436 6820 8.466617 TTGTTGTTTTATGGCCTCTTAAACTA 57.533 30.769 3.32 4.09 0.00 2.24
3437 6821 6.969993 TGTTGTTTTATGGCCTCTTAAACT 57.030 33.333 3.32 0.00 0.00 2.66
3439 6823 7.713073 CCTTTTGTTGTTTTATGGCCTCTTAAA 59.287 33.333 3.32 3.14 0.00 1.52
3440 6824 7.070074 TCCTTTTGTTGTTTTATGGCCTCTTAA 59.930 33.333 3.32 0.00 0.00 1.85
3441 6825 6.551601 TCCTTTTGTTGTTTTATGGCCTCTTA 59.448 34.615 3.32 0.00 0.00 2.10
3442 6826 5.365314 TCCTTTTGTTGTTTTATGGCCTCTT 59.635 36.000 3.32 0.00 0.00 2.85
3443 6827 4.898861 TCCTTTTGTTGTTTTATGGCCTCT 59.101 37.500 3.32 0.00 0.00 3.69
3444 6828 5.208463 TCCTTTTGTTGTTTTATGGCCTC 57.792 39.130 3.32 0.00 0.00 4.70
3468 6888 7.936584 TCTTTTGTCAAGATCCGTGTTATTTT 58.063 30.769 0.00 0.00 0.00 1.82
3474 6894 5.063204 TGATTCTTTTGTCAAGATCCGTGT 58.937 37.500 0.00 0.00 0.00 4.49
3478 6898 8.950210 TGACTATTGATTCTTTTGTCAAGATCC 58.050 33.333 0.00 0.00 37.72 3.36
3494 6914 9.178758 GGTTAAGTCCATTTTCTGACTATTGAT 57.821 33.333 0.00 0.00 40.84 2.57
3495 6915 8.160765 TGGTTAAGTCCATTTTCTGACTATTGA 58.839 33.333 0.00 0.00 40.84 2.57
3496 6916 8.335532 TGGTTAAGTCCATTTTCTGACTATTG 57.664 34.615 0.00 0.00 40.84 1.90
3498 6918 8.934023 TTTGGTTAAGTCCATTTTCTGACTAT 57.066 30.769 0.00 0.00 40.84 2.12
3499 6919 8.934023 ATTTGGTTAAGTCCATTTTCTGACTA 57.066 30.769 0.00 0.00 40.84 2.59
3500 6920 7.839680 ATTTGGTTAAGTCCATTTTCTGACT 57.160 32.000 0.00 0.00 43.47 3.41
3501 6921 8.887036 AAATTTGGTTAAGTCCATTTTCTGAC 57.113 30.769 0.00 0.00 37.33 3.51
3511 6931 9.037737 GTCTGGTTTTTAAATTTGGTTAAGTCC 57.962 33.333 0.00 0.00 0.00 3.85
3528 6948 7.597743 CAGTATACGTCTAAGTTGTCTGGTTTT 59.402 37.037 0.00 0.00 0.00 2.43
3532 6952 6.432607 TCAGTATACGTCTAAGTTGTCTGG 57.567 41.667 0.00 0.00 0.00 3.86
3574 6994 8.511321 TGAAATGTGGCAGTTTTACTAACTATG 58.489 33.333 0.00 0.00 0.00 2.23
3671 7114 2.056223 GGGACTGGTGCTAGCCGTA 61.056 63.158 13.29 0.00 0.00 4.02
3747 7190 2.574929 GCCGTCACCATCACCGTA 59.425 61.111 0.00 0.00 0.00 4.02
3752 7195 3.381983 AGCTCGCCGTCACCATCA 61.382 61.111 0.00 0.00 0.00 3.07
4007 7462 7.643569 TCACCACATTGCTGTTCATATAAAT 57.356 32.000 0.00 0.00 31.62 1.40
4013 7468 4.877378 ATTTCACCACATTGCTGTTCAT 57.123 36.364 0.00 0.00 31.62 2.57
4020 7475 4.255833 TGAGGAAATTTCACCACATTGC 57.744 40.909 19.49 0.00 0.00 3.56
4149 9386 1.681166 GCATCTTCCATGTCACCAGCT 60.681 52.381 0.00 0.00 0.00 4.24
4263 9500 2.759641 TAGACACGTCGGCCAGGTCT 62.760 60.000 2.24 10.06 41.37 3.85
4277 9514 6.544928 TTCAGAAGCTTACCATCATAGACA 57.455 37.500 0.00 0.00 0.00 3.41
4281 9518 8.704668 TCTTGTATTCAGAAGCTTACCATCATA 58.295 33.333 0.00 0.00 0.00 2.15
4293 9530 7.986320 ACCAATCTCATCTCTTGTATTCAGAAG 59.014 37.037 0.00 0.00 0.00 2.85
4306 9549 3.935203 TCGAAGCAAACCAATCTCATCTC 59.065 43.478 0.00 0.00 0.00 2.75
4332 9575 1.640428 TGGTCGTGAATCTGATTCGC 58.360 50.000 26.31 26.31 44.22 4.70
4336 9579 4.343239 TCAGATGATGGTCGTGAATCTGAT 59.657 41.667 9.07 0.00 45.06 2.90
4345 9588 5.066893 CCAATCAAAATCAGATGATGGTCGT 59.933 40.000 0.00 0.00 36.44 4.34
4378 9621 4.200283 GAGCTCTCCGCGTCCCTG 62.200 72.222 6.43 0.00 45.59 4.45
4411 9654 2.046285 CATTTCCTTCCGGCGCCTT 61.046 57.895 26.68 0.00 0.00 4.35
4426 9669 0.324738 TCGCCAGACTCTCCTCCATT 60.325 55.000 0.00 0.00 0.00 3.16
4568 9811 0.179000 ATCCTGACATCCAGTTCGCC 59.821 55.000 0.00 0.00 41.33 5.54
4576 9819 1.067821 GACTCCGACATCCTGACATCC 59.932 57.143 0.00 0.00 0.00 3.51
4629 9872 2.355193 GCAGGCTCTTCTCCTCGGT 61.355 63.158 0.00 0.00 0.00 4.69
4707 9950 1.035139 CAGCTCCAACAAACCAAGCT 58.965 50.000 0.00 0.00 43.81 3.74
4719 9962 4.382541 TCGCCTCCTCCAGCTCCA 62.383 66.667 0.00 0.00 0.00 3.86
4757 10000 1.762522 CTGGCGCCTCCTATCATGGT 61.763 60.000 29.70 0.00 35.26 3.55
5299 10578 2.997315 CCCGTGACCAGGCAGAGA 60.997 66.667 0.00 0.00 0.00 3.10
5905 11205 1.810031 CGCATCCATCATTGGTACCGT 60.810 52.381 7.57 0.00 44.06 4.83
5919 11219 5.890334 TGGAACAATCTAAATTTCGCATCC 58.110 37.500 0.00 0.00 31.92 3.51
5931 11231 7.062322 ATGCTATTCATGGTTGGAACAATCTA 58.938 34.615 0.00 0.00 37.53 1.98
5950 11254 5.897377 ACGTTTTTCCTGCTAAATGCTAT 57.103 34.783 0.00 0.00 43.37 2.97
5991 11295 7.592885 AGCAAAGCCATGTGATCTTTTATAT 57.407 32.000 0.00 0.00 0.00 0.86
5994 11358 5.336690 GGAAGCAAAGCCATGTGATCTTTTA 60.337 40.000 0.00 0.00 0.00 1.52
5998 11362 2.097825 GGAAGCAAAGCCATGTGATCT 58.902 47.619 0.00 0.00 0.00 2.75
6009 11373 3.904136 AGAACACGATTGGAAGCAAAG 57.096 42.857 0.00 0.00 0.00 2.77
6021 11385 6.335471 TCTATAAGGACACAAAGAACACGA 57.665 37.500 0.00 0.00 0.00 4.35
6046 11410 3.513515 TGGGCATTTCTTTGTACATTCCC 59.486 43.478 0.00 0.00 0.00 3.97
6048 11412 7.671495 AAATTGGGCATTTCTTTGTACATTC 57.329 32.000 0.00 0.00 27.71 2.67
6063 11427 2.832733 TGCTCATCATGAAAATTGGGCA 59.167 40.909 15.91 15.91 42.98 5.36
6066 11430 7.786178 ATTGAATGCTCATCATGAAAATTGG 57.214 32.000 0.00 0.00 35.13 3.16
6073 11437 4.951094 TGGTCAATTGAATGCTCATCATGA 59.049 37.500 10.35 0.00 35.13 3.07
6082 11446 6.645790 ATCCTCTATTGGTCAATTGAATGC 57.354 37.500 10.35 0.00 33.51 3.56
6086 11450 5.357878 GTGCAATCCTCTATTGGTCAATTGA 59.642 40.000 3.38 3.38 44.45 2.57
6123 11487 7.547019 CCGAATCTGCTAGAATTGCTCATATAA 59.453 37.037 0.00 0.00 0.00 0.98
6261 11625 9.833894 CTTATTTTGAGTTGTTGATCGTTTTTG 57.166 29.630 0.00 0.00 0.00 2.44
6287 11651 7.907563 GCTGAAATTTGAAGCACTAGTTATCTC 59.092 37.037 14.66 0.00 36.91 2.75
6289 11653 6.969473 GGCTGAAATTTGAAGCACTAGTTATC 59.031 38.462 19.10 0.00 38.73 1.75
6291 11655 5.183140 GGGCTGAAATTTGAAGCACTAGTTA 59.817 40.000 19.10 0.00 37.37 2.24
6303 11669 2.758009 CCACAAGTGGGCTGAAATTTG 58.242 47.619 11.43 0.00 46.81 2.32
6331 11697 2.854777 GTGTCTCACATATGTGCGAGTC 59.145 50.000 27.71 18.82 45.25 3.36
6332 11698 2.417379 GGTGTCTCACATATGTGCGAGT 60.417 50.000 27.71 0.00 45.25 4.18
6333 11699 2.159184 AGGTGTCTCACATATGTGCGAG 60.159 50.000 27.71 21.01 45.25 5.03
6334 11700 1.824852 AGGTGTCTCACATATGTGCGA 59.175 47.619 27.71 24.62 45.25 5.10
6335 11701 2.299993 AGGTGTCTCACATATGTGCG 57.700 50.000 27.71 22.81 45.25 5.34
6336 11702 4.697352 AGAAAAGGTGTCTCACATATGTGC 59.303 41.667 27.71 16.08 45.25 4.57
6337 11703 6.169094 AGAGAAAAGGTGTCTCACATATGTG 58.831 40.000 26.83 26.83 43.39 3.21
6340 11706 9.965902 AAAATAGAGAAAAGGTGTCTCACATAT 57.034 29.630 4.40 0.00 43.39 1.78
6342 11708 8.160106 AGAAAATAGAGAAAAGGTGTCTCACAT 58.840 33.333 4.40 0.00 43.39 3.21
6359 11725 3.123804 GAGATGCGGCGAAGAAAATAGA 58.876 45.455 12.98 0.00 0.00 1.98
6362 11730 1.936547 GAGAGATGCGGCGAAGAAAAT 59.063 47.619 12.98 0.00 0.00 1.82
6372 11740 1.442526 GGTGCAATGGAGAGATGCGG 61.443 60.000 0.00 0.00 42.91 5.69
6823 12191 0.693049 TGGGCTTGTCTTCTCCTTCC 59.307 55.000 0.00 0.00 0.00 3.46
6824 12192 1.814793 GTGGGCTTGTCTTCTCCTTC 58.185 55.000 0.00 0.00 0.00 3.46
6825 12193 0.035458 CGTGGGCTTGTCTTCTCCTT 59.965 55.000 0.00 0.00 0.00 3.36
6826 12194 0.832135 TCGTGGGCTTGTCTTCTCCT 60.832 55.000 0.00 0.00 0.00 3.69
6827 12195 0.670854 GTCGTGGGCTTGTCTTCTCC 60.671 60.000 0.00 0.00 0.00 3.71
6828 12196 0.318762 AGTCGTGGGCTTGTCTTCTC 59.681 55.000 0.00 0.00 0.00 2.87
6829 12197 0.034059 CAGTCGTGGGCTTGTCTTCT 59.966 55.000 0.00 0.00 0.00 2.85
6830 12198 1.569479 GCAGTCGTGGGCTTGTCTTC 61.569 60.000 0.00 0.00 0.00 2.87
6831 12199 1.598130 GCAGTCGTGGGCTTGTCTT 60.598 57.895 0.00 0.00 0.00 3.01
6854 12222 4.394712 AAGCAACGCCTCTCCCCG 62.395 66.667 0.00 0.00 0.00 5.73
6855 12223 2.747855 CAAGCAACGCCTCTCCCC 60.748 66.667 0.00 0.00 0.00 4.81
6859 12244 1.004440 GAGGACAAGCAACGCCTCT 60.004 57.895 0.00 0.00 42.81 3.69
6875 12260 1.812922 GCTCACTGTCGCCATGGAG 60.813 63.158 18.40 13.80 0.00 3.86
6883 12268 2.734723 CGGTGGTGCTCACTGTCG 60.735 66.667 10.21 3.57 45.35 4.35
6887 12272 2.737180 CAGTCGGTGGTGCTCACT 59.263 61.111 9.83 0.00 45.38 3.41
6895 12280 4.087892 CCAGGGAGCAGTCGGTGG 62.088 72.222 0.00 0.00 0.00 4.61
6896 12281 4.767255 GCCAGGGAGCAGTCGGTG 62.767 72.222 0.00 0.00 0.00 4.94
6899 12284 3.842923 ATCGCCAGGGAGCAGTCG 61.843 66.667 0.00 0.00 0.00 4.18
6900 12285 2.202987 CATCGCCAGGGAGCAGTC 60.203 66.667 0.00 0.00 0.00 3.51
6901 12286 4.479993 GCATCGCCAGGGAGCAGT 62.480 66.667 0.00 0.00 0.00 4.40
6914 12299 4.760047 AGTCGGTGGTGCGGCATC 62.760 66.667 5.72 5.99 0.00 3.91
6921 12306 3.314331 AGGGAGCAGTCGGTGGTG 61.314 66.667 0.00 0.00 36.87 4.17
6922 12307 3.314331 CAGGGAGCAGTCGGTGGT 61.314 66.667 0.00 0.00 40.54 4.16
6923 12308 4.087892 CCAGGGAGCAGTCGGTGG 62.088 72.222 0.00 0.00 0.00 4.61
6963 12348 4.246727 TGCATTTGTGCGTGCATG 57.753 50.000 0.09 0.09 45.60 4.06
6978 12363 1.464608 AGTATGTTGTGTGCGTGATGC 59.535 47.619 0.00 0.00 46.70 3.91
7043 12428 7.105588 GCCTTAATCCATCAAACCAGAAAAAT 58.894 34.615 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.