Multiple sequence alignment - TraesCS5D01G208600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G208600 | chr5D | 100.000 | 5149 | 0 | 0 | 1 | 5149 | 314898164 | 314903312 | 0.000000e+00 | 9509.0 |
1 | TraesCS5D01G208600 | chr5D | 93.908 | 673 | 34 | 3 | 1 | 673 | 370445394 | 370444729 | 0.000000e+00 | 1009.0 |
2 | TraesCS5D01G208600 | chr5D | 90.136 | 294 | 25 | 3 | 382 | 674 | 457021370 | 457021660 | 3.760000e-101 | 379.0 |
3 | TraesCS5D01G208600 | chr5D | 81.699 | 153 | 21 | 7 | 4988 | 5137 | 318811321 | 318811469 | 2.520000e-23 | 121.0 |
4 | TraesCS5D01G208600 | chr5A | 97.414 | 2552 | 57 | 6 | 1810 | 4358 | 408929434 | 408931979 | 0.000000e+00 | 4338.0 |
5 | TraesCS5D01G208600 | chr5A | 95.303 | 958 | 31 | 6 | 855 | 1808 | 408928380 | 408929327 | 0.000000e+00 | 1507.0 |
6 | TraesCS5D01G208600 | chr5A | 77.564 | 156 | 30 | 5 | 4989 | 5142 | 616022295 | 616022143 | 7.100000e-14 | 89.8 |
7 | TraesCS5D01G208600 | chr5B | 96.449 | 1577 | 49 | 2 | 2784 | 4358 | 362955801 | 362957372 | 0.000000e+00 | 2595.0 |
8 | TraesCS5D01G208600 | chr5B | 92.022 | 915 | 49 | 13 | 1865 | 2775 | 362947401 | 362948295 | 0.000000e+00 | 1264.0 |
9 | TraesCS5D01G208600 | chr5B | 93.472 | 674 | 42 | 1 | 1 | 674 | 137053757 | 137053086 | 0.000000e+00 | 1000.0 |
10 | TraesCS5D01G208600 | chr5B | 93.214 | 560 | 21 | 3 | 854 | 1405 | 362946390 | 362946940 | 0.000000e+00 | 808.0 |
11 | TraesCS5D01G208600 | chr5B | 86.567 | 67 | 5 | 4 | 4987 | 5051 | 529283929 | 529283993 | 2.570000e-08 | 71.3 |
12 | TraesCS5D01G208600 | chr4A | 91.543 | 674 | 55 | 1 | 1 | 674 | 142352782 | 142352111 | 0.000000e+00 | 928.0 |
13 | TraesCS5D01G208600 | chr4A | 81.448 | 221 | 32 | 9 | 4923 | 5139 | 732115916 | 732115701 | 6.850000e-39 | 172.0 |
14 | TraesCS5D01G208600 | chr4A | 81.448 | 221 | 32 | 9 | 4923 | 5139 | 732119107 | 732118892 | 6.850000e-39 | 172.0 |
15 | TraesCS5D01G208600 | chr4A | 79.208 | 202 | 32 | 10 | 4944 | 5139 | 732114342 | 732114145 | 1.160000e-26 | 132.0 |
16 | TraesCS5D01G208600 | chr4A | 79.208 | 202 | 32 | 10 | 4944 | 5139 | 732117533 | 732117336 | 1.160000e-26 | 132.0 |
17 | TraesCS5D01G208600 | chr2D | 89.778 | 675 | 66 | 3 | 1 | 675 | 230511154 | 230510483 | 0.000000e+00 | 861.0 |
18 | TraesCS5D01G208600 | chr2D | 77.969 | 581 | 78 | 28 | 4581 | 5145 | 81946913 | 81946367 | 8.320000e-83 | 318.0 |
19 | TraesCS5D01G208600 | chr2D | 87.726 | 277 | 26 | 2 | 404 | 674 | 635414697 | 635414423 | 2.990000e-82 | 316.0 |
20 | TraesCS5D01G208600 | chr7B | 89.747 | 673 | 66 | 2 | 1 | 672 | 155571820 | 155572490 | 0.000000e+00 | 857.0 |
21 | TraesCS5D01G208600 | chr7B | 85.084 | 476 | 55 | 6 | 208 | 669 | 501761877 | 501762350 | 6.030000e-129 | 472.0 |
22 | TraesCS5D01G208600 | chr7D | 88.576 | 674 | 72 | 3 | 1 | 674 | 29812769 | 29812101 | 0.000000e+00 | 813.0 |
23 | TraesCS5D01G208600 | chr7D | 82.474 | 679 | 110 | 7 | 1 | 674 | 388020929 | 388021603 | 2.070000e-163 | 586.0 |
24 | TraesCS5D01G208600 | chr2B | 84.841 | 409 | 37 | 10 | 4356 | 4739 | 493202056 | 493202464 | 6.250000e-104 | 388.0 |
25 | TraesCS5D01G208600 | chr2B | 82.168 | 286 | 38 | 7 | 4351 | 4628 | 133811553 | 133811273 | 3.100000e-57 | 233.0 |
26 | TraesCS5D01G208600 | chr2A | 82.075 | 318 | 52 | 5 | 4827 | 5142 | 82133486 | 82133172 | 3.060000e-67 | 267.0 |
27 | TraesCS5D01G208600 | chr2A | 77.778 | 477 | 68 | 21 | 4351 | 4814 | 82134202 | 82133751 | 5.110000e-65 | 259.0 |
28 | TraesCS5D01G208600 | chr2A | 81.579 | 76 | 11 | 3 | 4345 | 4418 | 71673561 | 71673487 | 5.570000e-05 | 60.2 |
29 | TraesCS5D01G208600 | chr4D | 86.184 | 152 | 20 | 1 | 4430 | 4580 | 483948791 | 483948640 | 4.130000e-36 | 163.0 |
30 | TraesCS5D01G208600 | chr4D | 93.151 | 73 | 4 | 1 | 4363 | 4435 | 483945493 | 483945564 | 7.050000e-19 | 106.0 |
31 | TraesCS5D01G208600 | chr3B | 77.729 | 229 | 35 | 13 | 4355 | 4571 | 819291388 | 819291612 | 5.410000e-25 | 126.0 |
32 | TraesCS5D01G208600 | chr6B | 75.879 | 199 | 46 | 2 | 80 | 277 | 658987408 | 658987605 | 3.280000e-17 | 100.0 |
33 | TraesCS5D01G208600 | chr3D | 80.992 | 121 | 21 | 2 | 5019 | 5139 | 546808580 | 546808462 | 1.530000e-15 | 95.3 |
34 | TraesCS5D01G208600 | chr6D | 86.207 | 58 | 7 | 1 | 4940 | 4996 | 460481785 | 460481842 | 1.550000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G208600 | chr5D | 314898164 | 314903312 | 5148 | False | 9509.0 | 9509 | 100.0000 | 1 | 5149 | 1 | chr5D.!!$F1 | 5148 |
1 | TraesCS5D01G208600 | chr5D | 370444729 | 370445394 | 665 | True | 1009.0 | 1009 | 93.9080 | 1 | 673 | 1 | chr5D.!!$R1 | 672 |
2 | TraesCS5D01G208600 | chr5A | 408928380 | 408931979 | 3599 | False | 2922.5 | 4338 | 96.3585 | 855 | 4358 | 2 | chr5A.!!$F1 | 3503 |
3 | TraesCS5D01G208600 | chr5B | 362955801 | 362957372 | 1571 | False | 2595.0 | 2595 | 96.4490 | 2784 | 4358 | 1 | chr5B.!!$F1 | 1574 |
4 | TraesCS5D01G208600 | chr5B | 362946390 | 362948295 | 1905 | False | 1036.0 | 1264 | 92.6180 | 854 | 2775 | 2 | chr5B.!!$F3 | 1921 |
5 | TraesCS5D01G208600 | chr5B | 137053086 | 137053757 | 671 | True | 1000.0 | 1000 | 93.4720 | 1 | 674 | 1 | chr5B.!!$R1 | 673 |
6 | TraesCS5D01G208600 | chr4A | 142352111 | 142352782 | 671 | True | 928.0 | 928 | 91.5430 | 1 | 674 | 1 | chr4A.!!$R1 | 673 |
7 | TraesCS5D01G208600 | chr2D | 230510483 | 230511154 | 671 | True | 861.0 | 861 | 89.7780 | 1 | 675 | 1 | chr2D.!!$R2 | 674 |
8 | TraesCS5D01G208600 | chr2D | 81946367 | 81946913 | 546 | True | 318.0 | 318 | 77.9690 | 4581 | 5145 | 1 | chr2D.!!$R1 | 564 |
9 | TraesCS5D01G208600 | chr7B | 155571820 | 155572490 | 670 | False | 857.0 | 857 | 89.7470 | 1 | 672 | 1 | chr7B.!!$F1 | 671 |
10 | TraesCS5D01G208600 | chr7D | 29812101 | 29812769 | 668 | True | 813.0 | 813 | 88.5760 | 1 | 674 | 1 | chr7D.!!$R1 | 673 |
11 | TraesCS5D01G208600 | chr7D | 388020929 | 388021603 | 674 | False | 586.0 | 586 | 82.4740 | 1 | 674 | 1 | chr7D.!!$F1 | 673 |
12 | TraesCS5D01G208600 | chr2A | 82133172 | 82134202 | 1030 | True | 263.0 | 267 | 79.9265 | 4351 | 5142 | 2 | chr2A.!!$R2 | 791 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
575 | 581 | 0.106116 | GGTGGTGTTGGTTAACCCCA | 60.106 | 55.0 | 21.97 | 17.8 | 41.23 | 4.96 | F |
844 | 851 | 0.111253 | CCAAGAGCCCACCTTCACTT | 59.889 | 55.0 | 0.00 | 0.0 | 0.00 | 3.16 | F |
851 | 858 | 0.397941 | CCCACCTTCACTTGCTCTCA | 59.602 | 55.0 | 0.00 | 0.0 | 0.00 | 3.27 | F |
2513 | 2697 | 0.118346 | TTAGAAGGGAGGGCTGGTCA | 59.882 | 55.0 | 0.00 | 0.0 | 0.00 | 4.02 | F |
2801 | 2985 | 0.757935 | TATCCCCGTACAGACCCTGC | 60.758 | 60.0 | 0.00 | 0.0 | 34.37 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1473 | 1540 | 0.312102 | GCAAAGCGCAAAAGGTCTCT | 59.688 | 50.000 | 11.47 | 0.0 | 41.79 | 3.10 | R |
2354 | 2538 | 0.623723 | TGGCTATTGAACCCCCAGAC | 59.376 | 55.000 | 0.00 | 0.0 | 0.00 | 3.51 | R |
2801 | 2985 | 3.735591 | TGTCAAGAAAAGGTAAGTCCCG | 58.264 | 45.455 | 0.00 | 0.0 | 36.75 | 5.14 | R |
4004 | 4190 | 0.529337 | ATCCAAGTGCATCGCTCTCG | 60.529 | 55.000 | 0.00 | 0.0 | 30.88 | 4.04 | R |
4544 | 4733 | 0.037605 | CGAAGACTTTGGCGGTAGGT | 60.038 | 55.000 | 0.00 | 0.0 | 0.00 | 3.08 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
58 | 59 | 0.955919 | CGGCTTTCACCTGGAAGTCC | 60.956 | 60.000 | 0.00 | 0.00 | 36.72 | 3.85 |
245 | 246 | 1.526686 | CAAGTGTGGCACTGGCTGA | 60.527 | 57.895 | 19.83 | 0.00 | 44.62 | 4.26 |
377 | 378 | 1.078709 | CCTACTTGTCATGTGGTGCG | 58.921 | 55.000 | 1.71 | 0.00 | 0.00 | 5.34 |
388 | 389 | 1.106351 | TGTGGTGCGTTTGGAAGCAT | 61.106 | 50.000 | 0.00 | 0.00 | 45.69 | 3.79 |
432 | 433 | 2.282674 | TACCCCGTCACTCGCTGT | 60.283 | 61.111 | 0.00 | 0.00 | 38.35 | 4.40 |
575 | 581 | 0.106116 | GGTGGTGTTGGTTAACCCCA | 60.106 | 55.000 | 21.97 | 17.80 | 41.23 | 4.96 |
647 | 654 | 8.492673 | TTCTTCTTTAATGAATGATACGCACT | 57.507 | 30.769 | 4.42 | 0.00 | 0.00 | 4.40 |
648 | 655 | 8.131455 | TCTTCTTTAATGAATGATACGCACTC | 57.869 | 34.615 | 4.42 | 0.00 | 0.00 | 3.51 |
649 | 656 | 7.981789 | TCTTCTTTAATGAATGATACGCACTCT | 59.018 | 33.333 | 4.42 | 0.00 | 0.00 | 3.24 |
692 | 699 | 5.337578 | AAAACCAATATGTATGCCACCAC | 57.662 | 39.130 | 0.00 | 0.00 | 0.00 | 4.16 |
693 | 700 | 3.660970 | ACCAATATGTATGCCACCACA | 57.339 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
694 | 701 | 4.183223 | ACCAATATGTATGCCACCACAT | 57.817 | 40.909 | 0.10 | 0.10 | 38.81 | 3.21 |
695 | 702 | 4.545678 | ACCAATATGTATGCCACCACATT | 58.454 | 39.130 | 0.00 | 0.00 | 36.74 | 2.71 |
696 | 703 | 5.700183 | ACCAATATGTATGCCACCACATTA | 58.300 | 37.500 | 0.00 | 0.00 | 36.74 | 1.90 |
697 | 704 | 5.534654 | ACCAATATGTATGCCACCACATTAC | 59.465 | 40.000 | 0.00 | 0.00 | 36.74 | 1.89 |
698 | 705 | 5.534278 | CCAATATGTATGCCACCACATTACA | 59.466 | 40.000 | 0.00 | 0.00 | 36.74 | 2.41 |
699 | 706 | 6.437928 | CAATATGTATGCCACCACATTACAC | 58.562 | 40.000 | 0.00 | 0.00 | 36.74 | 2.90 |
700 | 707 | 3.425162 | TGTATGCCACCACATTACACA | 57.575 | 42.857 | 0.00 | 0.00 | 0.00 | 3.72 |
701 | 708 | 3.961849 | TGTATGCCACCACATTACACAT | 58.038 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
702 | 709 | 3.693578 | TGTATGCCACCACATTACACATG | 59.306 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
703 | 710 | 2.284754 | TGCCACCACATTACACATGT | 57.715 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
704 | 711 | 1.885233 | TGCCACCACATTACACATGTG | 59.115 | 47.619 | 24.25 | 24.25 | 46.49 | 3.21 |
712 | 719 | 5.369685 | CACATTACACATGTGGTAAGCAA | 57.630 | 39.130 | 28.64 | 12.79 | 44.04 | 3.91 |
713 | 720 | 5.953183 | CACATTACACATGTGGTAAGCAAT | 58.047 | 37.500 | 28.64 | 14.26 | 44.04 | 3.56 |
714 | 721 | 6.029607 | CACATTACACATGTGGTAAGCAATC | 58.970 | 40.000 | 28.64 | 0.00 | 44.04 | 2.67 |
715 | 722 | 5.709631 | ACATTACACATGTGGTAAGCAATCA | 59.290 | 36.000 | 28.64 | 0.00 | 34.50 | 2.57 |
716 | 723 | 6.208402 | ACATTACACATGTGGTAAGCAATCAA | 59.792 | 34.615 | 28.64 | 7.69 | 34.50 | 2.57 |
717 | 724 | 6.641169 | TTACACATGTGGTAAGCAATCAAA | 57.359 | 33.333 | 28.64 | 3.96 | 34.19 | 2.69 |
718 | 725 | 5.726980 | ACACATGTGGTAAGCAATCAAAT | 57.273 | 34.783 | 28.64 | 0.31 | 34.19 | 2.32 |
719 | 726 | 6.832520 | ACACATGTGGTAAGCAATCAAATA | 57.167 | 33.333 | 28.64 | 0.00 | 34.19 | 1.40 |
720 | 727 | 7.225784 | ACACATGTGGTAAGCAATCAAATAA | 57.774 | 32.000 | 28.64 | 0.00 | 34.19 | 1.40 |
721 | 728 | 7.839907 | ACACATGTGGTAAGCAATCAAATAAT | 58.160 | 30.769 | 28.64 | 0.00 | 34.19 | 1.28 |
722 | 729 | 8.313292 | ACACATGTGGTAAGCAATCAAATAATT | 58.687 | 29.630 | 28.64 | 0.00 | 34.19 | 1.40 |
723 | 730 | 8.810427 | CACATGTGGTAAGCAATCAAATAATTC | 58.190 | 33.333 | 18.51 | 0.00 | 0.00 | 2.17 |
724 | 731 | 8.530311 | ACATGTGGTAAGCAATCAAATAATTCA | 58.470 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
725 | 732 | 9.027129 | CATGTGGTAAGCAATCAAATAATTCAG | 57.973 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
726 | 733 | 7.035004 | TGTGGTAAGCAATCAAATAATTCAGC | 58.965 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
727 | 734 | 7.093814 | TGTGGTAAGCAATCAAATAATTCAGCT | 60.094 | 33.333 | 0.00 | 0.00 | 0.00 | 4.24 |
728 | 735 | 8.405531 | GTGGTAAGCAATCAAATAATTCAGCTA | 58.594 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
729 | 736 | 8.623903 | TGGTAAGCAATCAAATAATTCAGCTAG | 58.376 | 33.333 | 0.00 | 0.00 | 0.00 | 3.42 |
730 | 737 | 8.840321 | GGTAAGCAATCAAATAATTCAGCTAGA | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
731 | 738 | 9.657121 | GTAAGCAATCAAATAATTCAGCTAGAC | 57.343 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
732 | 739 | 6.952743 | AGCAATCAAATAATTCAGCTAGACG | 58.047 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
733 | 740 | 6.017605 | AGCAATCAAATAATTCAGCTAGACGG | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 4.79 |
734 | 741 | 6.017934 | GCAATCAAATAATTCAGCTAGACGGA | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 4.69 |
735 | 742 | 7.571026 | CAATCAAATAATTCAGCTAGACGGAG | 58.429 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
736 | 743 | 6.465439 | TCAAATAATTCAGCTAGACGGAGA | 57.535 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
737 | 744 | 7.055667 | TCAAATAATTCAGCTAGACGGAGAT | 57.944 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
738 | 745 | 7.500992 | TCAAATAATTCAGCTAGACGGAGATT | 58.499 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
739 | 746 | 8.638873 | TCAAATAATTCAGCTAGACGGAGATTA | 58.361 | 33.333 | 0.00 | 0.83 | 0.00 | 1.75 |
740 | 747 | 8.920665 | CAAATAATTCAGCTAGACGGAGATTAG | 58.079 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
741 | 748 | 3.992260 | TTCAGCTAGACGGAGATTAGC | 57.008 | 47.619 | 0.00 | 0.00 | 40.91 | 3.09 |
743 | 750 | 4.353383 | TCAGCTAGACGGAGATTAGCTA | 57.647 | 45.455 | 5.07 | 0.00 | 45.59 | 3.32 |
744 | 751 | 4.912586 | TCAGCTAGACGGAGATTAGCTAT | 58.087 | 43.478 | 5.07 | 0.00 | 45.59 | 2.97 |
745 | 752 | 6.051179 | TCAGCTAGACGGAGATTAGCTATA | 57.949 | 41.667 | 5.07 | 0.00 | 45.59 | 1.31 |
746 | 753 | 6.473758 | TCAGCTAGACGGAGATTAGCTATAA | 58.526 | 40.000 | 5.07 | 0.00 | 45.59 | 0.98 |
747 | 754 | 6.596106 | TCAGCTAGACGGAGATTAGCTATAAG | 59.404 | 42.308 | 5.07 | 0.00 | 45.59 | 1.73 |
748 | 755 | 5.355910 | AGCTAGACGGAGATTAGCTATAAGC | 59.644 | 44.000 | 3.60 | 0.00 | 45.54 | 3.09 |
788 | 795 | 9.838339 | TTTCAACTTTGTCTCTATCTCTTTTCT | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
789 | 796 | 9.838339 | TTCAACTTTGTCTCTATCTCTTTTCTT | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
831 | 838 | 9.930693 | ATTTAAGAGTACACTAAAGACCAAGAG | 57.069 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
832 | 839 | 5.394224 | AGAGTACACTAAAGACCAAGAGC | 57.606 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
833 | 840 | 4.221041 | AGAGTACACTAAAGACCAAGAGCC | 59.779 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
834 | 841 | 2.861147 | ACACTAAAGACCAAGAGCCC | 57.139 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
835 | 842 | 2.054799 | ACACTAAAGACCAAGAGCCCA | 58.945 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
836 | 843 | 2.224548 | ACACTAAAGACCAAGAGCCCAC | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
837 | 844 | 1.351350 | ACTAAAGACCAAGAGCCCACC | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
838 | 845 | 1.630878 | CTAAAGACCAAGAGCCCACCT | 59.369 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
839 | 846 | 0.853530 | AAAGACCAAGAGCCCACCTT | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
840 | 847 | 0.402121 | AAGACCAAGAGCCCACCTTC | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
841 | 848 | 0.768221 | AGACCAAGAGCCCACCTTCA | 60.768 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
842 | 849 | 0.606673 | GACCAAGAGCCCACCTTCAC | 60.607 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
843 | 850 | 1.062488 | ACCAAGAGCCCACCTTCACT | 61.062 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
844 | 851 | 0.111253 | CCAAGAGCCCACCTTCACTT | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
845 | 852 | 1.242076 | CAAGAGCCCACCTTCACTTG | 58.758 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
846 | 853 | 0.538287 | AAGAGCCCACCTTCACTTGC | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
847 | 854 | 1.073897 | GAGCCCACCTTCACTTGCT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
848 | 855 | 0.957888 | GAGCCCACCTTCACTTGCTC | 60.958 | 60.000 | 0.00 | 0.00 | 38.51 | 4.26 |
849 | 856 | 1.073897 | GCCCACCTTCACTTGCTCT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 4.09 |
850 | 857 | 0.957888 | GCCCACCTTCACTTGCTCTC | 60.958 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
851 | 858 | 0.397941 | CCCACCTTCACTTGCTCTCA | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
852 | 859 | 1.202806 | CCCACCTTCACTTGCTCTCAA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
881 | 888 | 1.301401 | CCGGCGAAGACTCCAAACA | 60.301 | 57.895 | 9.30 | 0.00 | 0.00 | 2.83 |
959 | 974 | 3.721706 | CAGAGGAAGGGCGGCCTT | 61.722 | 66.667 | 40.42 | 40.42 | 33.84 | 4.35 |
1353 | 1371 | 3.916392 | CTTCGTCGCCGCCTTCAGT | 62.916 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
1470 | 1537 | 3.058450 | CAGAAGTGAAGTGCAGTCTCTG | 58.942 | 50.000 | 0.00 | 0.00 | 33.24 | 3.35 |
1471 | 1538 | 2.961741 | AGAAGTGAAGTGCAGTCTCTGA | 59.038 | 45.455 | 0.00 | 0.00 | 32.44 | 3.27 |
1472 | 1539 | 3.005684 | AGAAGTGAAGTGCAGTCTCTGAG | 59.994 | 47.826 | 0.00 | 0.00 | 32.44 | 3.35 |
1473 | 1540 | 2.591923 | AGTGAAGTGCAGTCTCTGAGA | 58.408 | 47.619 | 2.58 | 2.58 | 32.44 | 3.27 |
1592 | 1659 | 1.305201 | TCCGGCTGTGAAAGAAACAC | 58.695 | 50.000 | 0.00 | 0.00 | 38.55 | 3.32 |
1626 | 1693 | 1.131883 | CGCTCCCTTTGCATCAAGAAG | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
1647 | 1714 | 2.560105 | GCCCTTGTTGCTCTGAATTCTT | 59.440 | 45.455 | 7.05 | 0.00 | 0.00 | 2.52 |
1721 | 1788 | 3.806591 | GCTGCAGCAATTGTGTCAT | 57.193 | 47.368 | 33.36 | 0.00 | 41.59 | 3.06 |
1747 | 1814 | 1.954733 | GCAATGGGGTGCAGTCATGTA | 60.955 | 52.381 | 0.00 | 0.00 | 44.29 | 2.29 |
1788 | 1863 | 2.904434 | TGGTTCTGTCTAGAAAGGGACC | 59.096 | 50.000 | 20.89 | 20.89 | 44.12 | 4.46 |
1808 | 1883 | 3.142174 | CCACCTCCTTTTCTTGTCTGAC | 58.858 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1907 | 2087 | 7.168972 | TCGGTTTTGATTTTCATAGTGCTTTTG | 59.831 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2064 | 2245 | 9.158233 | CTCCGTGAAAATAGGTAAAATGAACTA | 57.842 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2128 | 2310 | 6.092122 | CACTGTGATTTAGCAATTCTACCGAA | 59.908 | 38.462 | 0.32 | 0.00 | 0.00 | 4.30 |
2132 | 2314 | 7.335673 | TGTGATTTAGCAATTCTACCGAATTCA | 59.664 | 33.333 | 6.22 | 0.00 | 45.57 | 2.57 |
2142 | 2324 | 4.566004 | TCTACCGAATTCAACTCCACTTG | 58.434 | 43.478 | 6.22 | 0.00 | 0.00 | 3.16 |
2191 | 2373 | 8.472007 | AGACCTTTCATAGTCTTACCTCATAG | 57.528 | 38.462 | 0.00 | 0.00 | 40.43 | 2.23 |
2192 | 2374 | 8.062536 | AGACCTTTCATAGTCTTACCTCATAGT | 58.937 | 37.037 | 0.00 | 0.00 | 40.43 | 2.12 |
2193 | 2375 | 9.352191 | GACCTTTCATAGTCTTACCTCATAGTA | 57.648 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2234 | 2416 | 4.833478 | ACAGAGTGATAGTCTTGCCATT | 57.167 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2354 | 2538 | 0.871722 | TCGTTTTCACAGGCCATTCG | 59.128 | 50.000 | 5.01 | 0.00 | 0.00 | 3.34 |
2513 | 2697 | 0.118346 | TTAGAAGGGAGGGCTGGTCA | 59.882 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2801 | 2985 | 0.757935 | TATCCCCGTACAGACCCTGC | 60.758 | 60.000 | 0.00 | 0.00 | 34.37 | 4.85 |
2921 | 3105 | 2.481185 | CCAACAACAATTGCTTGATGCC | 59.519 | 45.455 | 20.41 | 0.00 | 38.37 | 4.40 |
3110 | 3294 | 5.690865 | TCTTCTTCCATAAACAACTGTGGT | 58.309 | 37.500 | 0.00 | 0.00 | 33.47 | 4.16 |
3935 | 4121 | 1.503542 | GTGCTTCTGGGCAATGTCG | 59.496 | 57.895 | 0.00 | 0.00 | 44.18 | 4.35 |
4004 | 4190 | 3.181448 | TGAAAGACAGGGTGGGTAAACTC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
4121 | 4307 | 4.662961 | CAGCACAGGTCCGCGTCA | 62.663 | 66.667 | 4.92 | 0.00 | 0.00 | 4.35 |
4145 | 4331 | 1.664649 | CGCGAGACTTGTGCCTTCA | 60.665 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
4209 | 4395 | 2.741486 | TAACCGGAACTGCTGCCACC | 62.741 | 60.000 | 9.46 | 0.00 | 0.00 | 4.61 |
4271 | 4459 | 4.712829 | TGTGTAGTATTCTCCGGGATGAAA | 59.287 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
4272 | 4460 | 5.163447 | TGTGTAGTATTCTCCGGGATGAAAG | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4314 | 4502 | 7.378728 | GCTAAACAGTTGTTGTCCAATAAACTC | 59.621 | 37.037 | 0.00 | 0.00 | 39.73 | 3.01 |
4329 | 4518 | 1.620822 | AACTCACAGGCCCATGTTTC | 58.379 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
4379 | 4568 | 4.754618 | GGGGACAATTTTCATGTTTTGACC | 59.245 | 41.667 | 0.00 | 3.20 | 32.84 | 4.02 |
4380 | 4569 | 4.754618 | GGGACAATTTTCATGTTTTGACCC | 59.245 | 41.667 | 16.79 | 16.79 | 43.31 | 4.46 |
4396 | 4585 | 7.931948 | TGTTTTGACCCTTTTGTGAAACTTTAA | 59.068 | 29.630 | 0.00 | 0.00 | 38.04 | 1.52 |
4407 | 4596 | 6.861065 | TGTGAAACTTTAACAGGATCTGAC | 57.139 | 37.500 | 1.59 | 0.00 | 38.04 | 3.51 |
4416 | 4605 | 0.176680 | CAGGATCTGACCCTGGTTCG | 59.823 | 60.000 | 10.48 | 0.00 | 45.66 | 3.95 |
4421 | 4610 | 3.134081 | GGATCTGACCCTGGTTCGAAATA | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
4423 | 4612 | 4.837093 | TCTGACCCTGGTTCGAAATAAT | 57.163 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
4427 | 4616 | 6.019779 | TGACCCTGGTTCGAAATAATTTTG | 57.980 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
4437 | 4626 | 7.148069 | GGTTCGAAATAATTTTGGGATCTGACT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
4439 | 4628 | 7.338710 | TCGAAATAATTTTGGGATCTGACTCT | 58.661 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
4448 | 4637 | 7.554959 | TTTGGGATCTGACTCTTTTACTACT | 57.445 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4450 | 4639 | 5.105310 | TGGGATCTGACTCTTTTACTACTGC | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4451 | 4640 | 5.128008 | GGGATCTGACTCTTTTACTACTGCT | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 4.24 |
4457 | 4646 | 9.111613 | TCTGACTCTTTTACTACTGCTATAGTC | 57.888 | 37.037 | 0.84 | 0.00 | 40.89 | 2.59 |
4470 | 4659 | 2.552591 | GCTATAGTCTCTGGCGGTAGGA | 60.553 | 54.545 | 0.84 | 0.00 | 0.00 | 2.94 |
4479 | 4668 | 0.177141 | TGGCGGTAGGATAACACTGC | 59.823 | 55.000 | 0.00 | 0.00 | 44.64 | 4.40 |
4502 | 4691 | 4.681978 | GCCACGGTCTTCGGCAGT | 62.682 | 66.667 | 2.60 | 0.00 | 45.52 | 4.40 |
4538 | 4727 | 6.721442 | CGTTATGACGTCGTTATAACATGA | 57.279 | 37.500 | 33.72 | 15.40 | 41.74 | 3.07 |
4539 | 4728 | 7.140475 | CGTTATGACGTCGTTATAACATGAA | 57.860 | 36.000 | 33.72 | 12.81 | 41.74 | 2.57 |
4540 | 4729 | 7.602645 | CGTTATGACGTCGTTATAACATGAAA | 58.397 | 34.615 | 33.72 | 12.26 | 41.74 | 2.69 |
4541 | 4730 | 8.103320 | CGTTATGACGTCGTTATAACATGAAAA | 58.897 | 33.333 | 33.72 | 11.70 | 41.74 | 2.29 |
4542 | 4731 | 9.743937 | GTTATGACGTCGTTATAACATGAAAAA | 57.256 | 29.630 | 31.92 | 9.21 | 41.48 | 1.94 |
4545 | 4734 | 9.910511 | ATGACGTCGTTATAACATGAAAAATAC | 57.089 | 29.630 | 15.67 | 0.00 | 0.00 | 1.89 |
4546 | 4735 | 8.382130 | TGACGTCGTTATAACATGAAAAATACC | 58.618 | 33.333 | 15.67 | 0.00 | 0.00 | 2.73 |
4547 | 4736 | 8.483307 | ACGTCGTTATAACATGAAAAATACCT | 57.517 | 30.769 | 15.67 | 0.00 | 0.00 | 3.08 |
4548 | 4737 | 9.585099 | ACGTCGTTATAACATGAAAAATACCTA | 57.415 | 29.630 | 15.67 | 0.00 | 0.00 | 3.08 |
4551 | 4740 | 9.033481 | TCGTTATAACATGAAAAATACCTACCG | 57.967 | 33.333 | 15.67 | 0.00 | 0.00 | 4.02 |
4555 | 4744 | 4.337145 | ACATGAAAAATACCTACCGCCAA | 58.663 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
4556 | 4745 | 4.767928 | ACATGAAAAATACCTACCGCCAAA | 59.232 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
4562 | 4751 | 3.538634 | ATACCTACCGCCAAAGTCTTC | 57.461 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
4572 | 4761 | 1.347320 | CAAAGTCTTCGGCGGTAGAC | 58.653 | 55.000 | 25.28 | 25.28 | 39.94 | 2.59 |
4573 | 4762 | 0.245813 | AAAGTCTTCGGCGGTAGACC | 59.754 | 55.000 | 27.38 | 16.16 | 40.35 | 3.85 |
4574 | 4763 | 0.896940 | AAGTCTTCGGCGGTAGACCA | 60.897 | 55.000 | 27.38 | 0.00 | 40.35 | 4.02 |
4576 | 4765 | 0.175073 | GTCTTCGGCGGTAGACCATT | 59.825 | 55.000 | 23.45 | 0.00 | 35.29 | 3.16 |
4577 | 4766 | 1.406539 | GTCTTCGGCGGTAGACCATTA | 59.593 | 52.381 | 23.45 | 0.00 | 35.29 | 1.90 |
4578 | 4767 | 2.035576 | GTCTTCGGCGGTAGACCATTAT | 59.964 | 50.000 | 23.45 | 0.00 | 35.29 | 1.28 |
4580 | 4769 | 3.504906 | TCTTCGGCGGTAGACCATTATAG | 59.495 | 47.826 | 7.21 | 0.00 | 35.14 | 1.31 |
4581 | 4770 | 2.165167 | TCGGCGGTAGACCATTATAGG | 58.835 | 52.381 | 7.21 | 0.00 | 35.14 | 2.57 |
4582 | 4771 | 1.403780 | CGGCGGTAGACCATTATAGGC | 60.404 | 57.143 | 0.00 | 0.00 | 35.14 | 3.93 |
4583 | 4772 | 1.621814 | GGCGGTAGACCATTATAGGCA | 59.378 | 52.381 | 0.00 | 0.00 | 35.14 | 4.75 |
4584 | 4773 | 2.236395 | GGCGGTAGACCATTATAGGCAT | 59.764 | 50.000 | 0.00 | 0.00 | 35.14 | 4.40 |
4592 | 4781 | 7.942894 | GGTAGACCATTATAGGCATTACCTTTT | 59.057 | 37.037 | 0.00 | 0.00 | 42.37 | 2.27 |
4611 | 4800 | 3.915437 | TTCTTTGAAAATGAGGTCGCC | 57.085 | 42.857 | 0.00 | 0.00 | 31.23 | 5.54 |
4633 | 4835 | 2.334653 | CGTGCATGGTGGCGTTTT | 59.665 | 55.556 | 0.00 | 0.00 | 36.28 | 2.43 |
4634 | 4836 | 2.015627 | CGTGCATGGTGGCGTTTTG | 61.016 | 57.895 | 0.00 | 0.00 | 36.28 | 2.44 |
4635 | 4837 | 2.028778 | TGCATGGTGGCGTTTTGC | 59.971 | 55.556 | 0.00 | 0.00 | 45.38 | 3.68 |
4646 | 4848 | 2.785879 | GCGTTTTGCAATTATGTGGC | 57.214 | 45.000 | 0.00 | 0.00 | 45.45 | 5.01 |
4669 | 4871 | 0.108992 | AAATGTGCAGGCTTCATGCG | 60.109 | 50.000 | 0.00 | 0.00 | 46.87 | 4.73 |
4704 | 4917 | 2.043992 | ACCCATGCATCCCATCAATTG | 58.956 | 47.619 | 0.00 | 0.00 | 29.71 | 2.32 |
4716 | 4929 | 7.173047 | GCATCCCATCAATTGTTTAAGTTTGTT | 59.827 | 33.333 | 5.13 | 0.00 | 0.00 | 2.83 |
4732 | 4945 | 2.857186 | TGTTGCATGTCCAAGCTAGA | 57.143 | 45.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4772 | 4985 | 1.908619 | AGTACTGATGCATGTGGGTGA | 59.091 | 47.619 | 2.46 | 0.00 | 0.00 | 4.02 |
4773 | 4986 | 2.093288 | AGTACTGATGCATGTGGGTGAG | 60.093 | 50.000 | 2.46 | 0.00 | 0.00 | 3.51 |
4801 | 5014 | 1.145945 | AGGGAGAGATGGATGCGAGTA | 59.854 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
4802 | 5015 | 1.964223 | GGGAGAGATGGATGCGAGTAA | 59.036 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
4808 | 5021 | 6.161855 | AGAGATGGATGCGAGTAAATGTTA | 57.838 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
4809 | 5022 | 5.986135 | AGAGATGGATGCGAGTAAATGTTAC | 59.014 | 40.000 | 0.00 | 0.00 | 0.00 | 2.50 |
4814 | 5027 | 4.094294 | GGATGCGAGTAAATGTTACTGCAA | 59.906 | 41.667 | 19.47 | 10.27 | 36.23 | 4.08 |
4816 | 5029 | 5.621197 | TGCGAGTAAATGTTACTGCAAAT | 57.379 | 34.783 | 16.11 | 0.00 | 32.75 | 2.32 |
4817 | 5030 | 5.389778 | TGCGAGTAAATGTTACTGCAAATG | 58.610 | 37.500 | 16.11 | 0.00 | 32.75 | 2.32 |
4818 | 5031 | 5.180304 | TGCGAGTAAATGTTACTGCAAATGA | 59.820 | 36.000 | 16.11 | 1.99 | 32.75 | 2.57 |
4819 | 5032 | 6.083630 | GCGAGTAAATGTTACTGCAAATGAA | 58.916 | 36.000 | 5.42 | 0.00 | 0.00 | 2.57 |
4820 | 5033 | 6.747280 | GCGAGTAAATGTTACTGCAAATGAAT | 59.253 | 34.615 | 5.42 | 0.00 | 0.00 | 2.57 |
4821 | 5034 | 7.253420 | GCGAGTAAATGTTACTGCAAATGAATG | 60.253 | 37.037 | 5.42 | 0.00 | 0.00 | 2.67 |
4822 | 5035 | 7.750458 | CGAGTAAATGTTACTGCAAATGAATGT | 59.250 | 33.333 | 5.42 | 0.00 | 0.00 | 2.71 |
4823 | 5036 | 9.410556 | GAGTAAATGTTACTGCAAATGAATGTT | 57.589 | 29.630 | 5.42 | 0.00 | 0.00 | 2.71 |
4832 | 5297 | 4.548494 | TGCAAATGAATGTTACTGCAGTG | 58.452 | 39.130 | 29.57 | 8.84 | 35.02 | 3.66 |
4836 | 5301 | 5.772825 | AATGAATGTTACTGCAGTGTGTT | 57.227 | 34.783 | 29.57 | 17.26 | 0.00 | 3.32 |
4840 | 5305 | 6.052360 | TGAATGTTACTGCAGTGTGTTAGAA | 58.948 | 36.000 | 29.57 | 10.77 | 0.00 | 2.10 |
4845 | 5310 | 2.943033 | ACTGCAGTGTGTTAGAAACCAC | 59.057 | 45.455 | 20.97 | 0.00 | 34.71 | 4.16 |
4846 | 5311 | 1.937223 | TGCAGTGTGTTAGAAACCACG | 59.063 | 47.619 | 0.00 | 0.00 | 37.53 | 4.94 |
4847 | 5312 | 1.937899 | GCAGTGTGTTAGAAACCACGT | 59.062 | 47.619 | 0.00 | 0.00 | 37.53 | 4.49 |
4889 | 5354 | 5.574830 | GCATCTCGTAATAGTGAATAGCCTG | 59.425 | 44.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4892 | 5357 | 3.639561 | TCGTAATAGTGAATAGCCTGCCA | 59.360 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
4922 | 5387 | 0.688487 | TGGTGGTAGGGTTACACAGC | 59.312 | 55.000 | 0.00 | 0.00 | 33.19 | 4.40 |
4923 | 5388 | 0.035725 | GGTGGTAGGGTTACACAGCC | 60.036 | 60.000 | 0.00 | 0.00 | 44.40 | 4.85 |
4933 | 5398 | 0.036765 | TTACACAGCCTACCGCCAAG | 60.037 | 55.000 | 0.00 | 0.00 | 38.78 | 3.61 |
4936 | 5401 | 0.178068 | CACAGCCTACCGCCAAGTAT | 59.822 | 55.000 | 0.00 | 0.00 | 38.78 | 2.12 |
4949 | 5414 | 1.583054 | CAAGTATTCTGGCGGTAGGC | 58.417 | 55.000 | 0.00 | 0.00 | 44.11 | 3.93 |
4959 | 5424 | 0.380733 | GGCGGTAGGCTATTTTGCAC | 59.619 | 55.000 | 0.00 | 0.00 | 42.94 | 4.57 |
4967 | 5433 | 4.370364 | AGGCTATTTTGCACGTTAATGG | 57.630 | 40.909 | 0.00 | 0.00 | 34.04 | 3.16 |
4970 | 5436 | 1.989430 | ATTTTGCACGTTAATGGCCG | 58.011 | 45.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4986 | 5452 | 2.311701 | CCGTGACGGCGCAGTTAAA | 61.312 | 57.895 | 15.89 | 0.81 | 41.17 | 1.52 |
4994 | 5461 | 0.935196 | GGCGCAGTTAAATCCTACCG | 59.065 | 55.000 | 10.83 | 0.00 | 0.00 | 4.02 |
4995 | 5462 | 1.648504 | GCGCAGTTAAATCCTACCGT | 58.351 | 50.000 | 0.30 | 0.00 | 0.00 | 4.83 |
4998 | 5465 | 3.255725 | CGCAGTTAAATCCTACCGTCAA | 58.744 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
4999 | 5466 | 3.306166 | CGCAGTTAAATCCTACCGTCAAG | 59.694 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
5000 | 5467 | 4.251268 | GCAGTTAAATCCTACCGTCAAGT | 58.749 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
5003 | 5470 | 6.628185 | CAGTTAAATCCTACCGTCAAGTACT | 58.372 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5004 | 5471 | 6.750963 | CAGTTAAATCCTACCGTCAAGTACTC | 59.249 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
5008 | 5475 | 2.040813 | TCCTACCGTCAAGTACTCTGGT | 59.959 | 50.000 | 0.00 | 4.74 | 0.00 | 4.00 |
5019 | 5486 | 4.393239 | AGTACTCTGGTGGTAGGTTGTA | 57.607 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
5034 | 5501 | 2.830104 | GTTGTATAACCCTACCGCCAG | 58.170 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
5035 | 5502 | 2.431782 | GTTGTATAACCCTACCGCCAGA | 59.568 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5037 | 5504 | 2.091720 | TGTATAACCCTACCGCCAGAGA | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
5041 | 5508 | 0.556747 | ACCCTACCGCCAGAGACTAT | 59.443 | 55.000 | 0.00 | 0.00 | 0.00 | 2.12 |
5095 | 5562 | 5.952526 | TTTTTCAAACGAGGGTTAGATCC | 57.047 | 39.130 | 0.00 | 0.00 | 34.62 | 3.36 |
5096 | 5563 | 4.627284 | TTTCAAACGAGGGTTAGATCCA | 57.373 | 40.909 | 0.00 | 0.00 | 34.62 | 3.41 |
5103 | 5570 | 3.132467 | ACGAGGGTTAGATCCAGCTAAAC | 59.868 | 47.826 | 0.00 | 0.00 | 37.34 | 2.01 |
5107 | 5574 | 6.406624 | CGAGGGTTAGATCCAGCTAAACTTTA | 60.407 | 42.308 | 0.00 | 0.00 | 37.99 | 1.85 |
5109 | 5576 | 7.873195 | AGGGTTAGATCCAGCTAAACTTTAAT | 58.127 | 34.615 | 0.00 | 0.00 | 37.99 | 1.40 |
5126 | 5593 | 8.637281 | AACTTTAATAAAAGGGTCAAAACACG | 57.363 | 30.769 | 3.19 | 0.00 | 45.39 | 4.49 |
5130 | 5597 | 9.649167 | TTTAATAAAAGGGTCAAAACACGAAAA | 57.351 | 25.926 | 0.00 | 0.00 | 32.44 | 2.29 |
5134 | 5601 | 4.729227 | AGGGTCAAAACACGAAAATTGT | 57.271 | 36.364 | 0.00 | 0.00 | 32.44 | 2.71 |
5137 | 5604 | 4.440940 | GGGTCAAAACACGAAAATTGTCCT | 60.441 | 41.667 | 0.00 | 0.00 | 33.40 | 3.85 |
5142 | 5609 | 2.779506 | ACACGAAAATTGTCCTCCCTC | 58.220 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
5145 | 5612 | 2.290323 | ACGAAAATTGTCCTCCCTCTGG | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5146 | 5613 | 2.290323 | CGAAAATTGTCCTCCCTCTGGT | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5147 | 5614 | 3.055385 | CGAAAATTGTCCTCCCTCTGGTA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
5148 | 5615 | 4.518249 | GAAAATTGTCCTCCCTCTGGTAG | 58.482 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
245 | 246 | 1.367840 | GTCTGTTCGTGAGGCCACT | 59.632 | 57.895 | 5.01 | 0.00 | 41.06 | 4.00 |
377 | 378 | 4.678509 | TGTCATTACGATGCTTCCAAAC | 57.321 | 40.909 | 0.00 | 0.00 | 33.14 | 2.93 |
388 | 389 | 4.896562 | GTTGAACACGATGTCATTACGA | 57.103 | 40.909 | 1.29 | 0.00 | 0.00 | 3.43 |
432 | 433 | 5.788533 | TCCTCCTTAATCCTAAGTGAAACCA | 59.211 | 40.000 | 0.00 | 0.00 | 37.80 | 3.67 |
575 | 581 | 7.958567 | CACGGTTACATCGTAAATTTACATGTT | 59.041 | 33.333 | 29.89 | 21.24 | 38.94 | 2.71 |
675 | 682 | 6.039159 | TGTGTAATGTGGTGGCATACATATTG | 59.961 | 38.462 | 19.66 | 0.00 | 36.56 | 1.90 |
676 | 683 | 6.125719 | TGTGTAATGTGGTGGCATACATATT | 58.874 | 36.000 | 17.11 | 16.89 | 36.56 | 1.28 |
677 | 684 | 5.689835 | TGTGTAATGTGGTGGCATACATAT | 58.310 | 37.500 | 17.11 | 9.01 | 36.56 | 1.78 |
678 | 685 | 5.104259 | TGTGTAATGTGGTGGCATACATA | 57.896 | 39.130 | 17.11 | 7.27 | 36.56 | 2.29 |
679 | 686 | 3.961849 | TGTGTAATGTGGTGGCATACAT | 58.038 | 40.909 | 12.71 | 12.71 | 39.08 | 2.29 |
680 | 687 | 3.425162 | TGTGTAATGTGGTGGCATACA | 57.575 | 42.857 | 9.48 | 9.48 | 0.00 | 2.29 |
681 | 688 | 3.694072 | ACATGTGTAATGTGGTGGCATAC | 59.306 | 43.478 | 0.00 | 0.00 | 0.00 | 2.39 |
682 | 689 | 3.693578 | CACATGTGTAATGTGGTGGCATA | 59.306 | 43.478 | 18.03 | 0.00 | 44.04 | 3.14 |
683 | 690 | 2.492881 | CACATGTGTAATGTGGTGGCAT | 59.507 | 45.455 | 18.03 | 0.00 | 44.04 | 4.40 |
684 | 691 | 1.885233 | CACATGTGTAATGTGGTGGCA | 59.115 | 47.619 | 18.03 | 0.00 | 44.04 | 4.92 |
685 | 692 | 2.634982 | CACATGTGTAATGTGGTGGC | 57.365 | 50.000 | 18.03 | 0.00 | 44.04 | 5.01 |
690 | 697 | 5.369685 | TTGCTTACCACATGTGTAATGTG | 57.630 | 39.130 | 23.79 | 10.21 | 46.49 | 3.21 |
691 | 698 | 5.709631 | TGATTGCTTACCACATGTGTAATGT | 59.290 | 36.000 | 23.79 | 16.29 | 0.00 | 2.71 |
692 | 699 | 6.193514 | TGATTGCTTACCACATGTGTAATG | 57.806 | 37.500 | 23.79 | 11.29 | 0.00 | 1.90 |
693 | 700 | 6.832520 | TTGATTGCTTACCACATGTGTAAT | 57.167 | 33.333 | 23.79 | 10.22 | 0.00 | 1.89 |
694 | 701 | 6.641169 | TTTGATTGCTTACCACATGTGTAA | 57.359 | 33.333 | 23.79 | 18.81 | 0.00 | 2.41 |
695 | 702 | 6.832520 | ATTTGATTGCTTACCACATGTGTA | 57.167 | 33.333 | 23.79 | 13.34 | 0.00 | 2.90 |
696 | 703 | 5.726980 | ATTTGATTGCTTACCACATGTGT | 57.273 | 34.783 | 23.79 | 14.29 | 0.00 | 3.72 |
697 | 704 | 8.706492 | AATTATTTGATTGCTTACCACATGTG | 57.294 | 30.769 | 19.31 | 19.31 | 0.00 | 3.21 |
698 | 705 | 8.530311 | TGAATTATTTGATTGCTTACCACATGT | 58.470 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
699 | 706 | 8.929827 | TGAATTATTTGATTGCTTACCACATG | 57.070 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
700 | 707 | 7.707893 | GCTGAATTATTTGATTGCTTACCACAT | 59.292 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
701 | 708 | 7.035004 | GCTGAATTATTTGATTGCTTACCACA | 58.965 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
702 | 709 | 7.260603 | AGCTGAATTATTTGATTGCTTACCAC | 58.739 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
703 | 710 | 7.408756 | AGCTGAATTATTTGATTGCTTACCA | 57.591 | 32.000 | 0.00 | 0.00 | 0.00 | 3.25 |
704 | 711 | 8.840321 | TCTAGCTGAATTATTTGATTGCTTACC | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
705 | 712 | 9.657121 | GTCTAGCTGAATTATTTGATTGCTTAC | 57.343 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
706 | 713 | 8.551205 | CGTCTAGCTGAATTATTTGATTGCTTA | 58.449 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
707 | 714 | 7.412853 | CGTCTAGCTGAATTATTTGATTGCTT | 58.587 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
708 | 715 | 6.017605 | CCGTCTAGCTGAATTATTTGATTGCT | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
709 | 716 | 6.017934 | TCCGTCTAGCTGAATTATTTGATTGC | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
710 | 717 | 7.439356 | TCTCCGTCTAGCTGAATTATTTGATTG | 59.561 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
711 | 718 | 7.500992 | TCTCCGTCTAGCTGAATTATTTGATT | 58.499 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
712 | 719 | 7.055667 | TCTCCGTCTAGCTGAATTATTTGAT | 57.944 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
713 | 720 | 6.465439 | TCTCCGTCTAGCTGAATTATTTGA | 57.535 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
714 | 721 | 7.721286 | AATCTCCGTCTAGCTGAATTATTTG | 57.279 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
715 | 722 | 7.600752 | GCTAATCTCCGTCTAGCTGAATTATTT | 59.399 | 37.037 | 0.00 | 0.00 | 36.06 | 1.40 |
716 | 723 | 7.039363 | AGCTAATCTCCGTCTAGCTGAATTATT | 60.039 | 37.037 | 0.00 | 0.00 | 45.14 | 1.40 |
717 | 724 | 6.435904 | AGCTAATCTCCGTCTAGCTGAATTAT | 59.564 | 38.462 | 0.00 | 0.00 | 45.14 | 1.28 |
718 | 725 | 5.770663 | AGCTAATCTCCGTCTAGCTGAATTA | 59.229 | 40.000 | 0.00 | 0.00 | 45.14 | 1.40 |
719 | 726 | 4.586841 | AGCTAATCTCCGTCTAGCTGAATT | 59.413 | 41.667 | 0.00 | 0.00 | 45.14 | 2.17 |
720 | 727 | 4.148838 | AGCTAATCTCCGTCTAGCTGAAT | 58.851 | 43.478 | 0.00 | 0.00 | 45.14 | 2.57 |
721 | 728 | 3.556999 | AGCTAATCTCCGTCTAGCTGAA | 58.443 | 45.455 | 0.00 | 0.00 | 45.14 | 3.02 |
722 | 729 | 3.216187 | AGCTAATCTCCGTCTAGCTGA | 57.784 | 47.619 | 0.00 | 0.00 | 45.14 | 4.26 |
723 | 730 | 6.676943 | GCTTATAGCTAATCTCCGTCTAGCTG | 60.677 | 46.154 | 12.01 | 0.00 | 46.07 | 4.24 |
725 | 732 | 5.575019 | GCTTATAGCTAATCTCCGTCTAGC | 58.425 | 45.833 | 0.00 | 0.00 | 38.45 | 3.42 |
762 | 769 | 9.838339 | AGAAAAGAGATAGAGACAAAGTTGAAA | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
763 | 770 | 9.838339 | AAGAAAAGAGATAGAGACAAAGTTGAA | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
805 | 812 | 9.930693 | CTCTTGGTCTTTAGTGTACTCTTAAAT | 57.069 | 33.333 | 2.25 | 0.00 | 0.00 | 1.40 |
806 | 813 | 7.871463 | GCTCTTGGTCTTTAGTGTACTCTTAAA | 59.129 | 37.037 | 2.25 | 0.73 | 0.00 | 1.52 |
807 | 814 | 7.376615 | GCTCTTGGTCTTTAGTGTACTCTTAA | 58.623 | 38.462 | 2.25 | 0.00 | 0.00 | 1.85 |
808 | 815 | 6.071503 | GGCTCTTGGTCTTTAGTGTACTCTTA | 60.072 | 42.308 | 2.25 | 0.00 | 0.00 | 2.10 |
809 | 816 | 5.279556 | GGCTCTTGGTCTTTAGTGTACTCTT | 60.280 | 44.000 | 2.25 | 0.00 | 0.00 | 2.85 |
810 | 817 | 4.221041 | GGCTCTTGGTCTTTAGTGTACTCT | 59.779 | 45.833 | 2.57 | 2.57 | 0.00 | 3.24 |
811 | 818 | 4.496360 | GGCTCTTGGTCTTTAGTGTACTC | 58.504 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
812 | 819 | 3.261137 | GGGCTCTTGGTCTTTAGTGTACT | 59.739 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
813 | 820 | 3.007614 | TGGGCTCTTGGTCTTTAGTGTAC | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
814 | 821 | 3.007614 | GTGGGCTCTTGGTCTTTAGTGTA | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
815 | 822 | 2.054799 | TGGGCTCTTGGTCTTTAGTGT | 58.945 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
816 | 823 | 2.427506 | GTGGGCTCTTGGTCTTTAGTG | 58.572 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
817 | 824 | 1.351350 | GGTGGGCTCTTGGTCTTTAGT | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
818 | 825 | 1.630878 | AGGTGGGCTCTTGGTCTTTAG | 59.369 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
819 | 826 | 1.742308 | AGGTGGGCTCTTGGTCTTTA | 58.258 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
820 | 827 | 0.853530 | AAGGTGGGCTCTTGGTCTTT | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
821 | 828 | 0.402121 | GAAGGTGGGCTCTTGGTCTT | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
822 | 829 | 0.768221 | TGAAGGTGGGCTCTTGGTCT | 60.768 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
823 | 830 | 0.606673 | GTGAAGGTGGGCTCTTGGTC | 60.607 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
824 | 831 | 1.062488 | AGTGAAGGTGGGCTCTTGGT | 61.062 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
825 | 832 | 0.111253 | AAGTGAAGGTGGGCTCTTGG | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
826 | 833 | 1.242076 | CAAGTGAAGGTGGGCTCTTG | 58.758 | 55.000 | 0.00 | 0.00 | 31.83 | 3.02 |
827 | 834 | 0.538287 | GCAAGTGAAGGTGGGCTCTT | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
828 | 835 | 1.073897 | GCAAGTGAAGGTGGGCTCT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 4.09 |
829 | 836 | 0.957888 | GAGCAAGTGAAGGTGGGCTC | 60.958 | 60.000 | 0.00 | 0.00 | 40.63 | 4.70 |
830 | 837 | 1.073897 | GAGCAAGTGAAGGTGGGCT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
831 | 838 | 0.957888 | GAGAGCAAGTGAAGGTGGGC | 60.958 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
832 | 839 | 0.397941 | TGAGAGCAAGTGAAGGTGGG | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
833 | 840 | 2.149578 | CTTGAGAGCAAGTGAAGGTGG | 58.850 | 52.381 | 0.00 | 0.00 | 45.10 | 4.61 |
843 | 850 | 2.485479 | GGTGGTTGAGACTTGAGAGCAA | 60.485 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
844 | 851 | 1.070758 | GGTGGTTGAGACTTGAGAGCA | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
845 | 852 | 1.802069 | GGTGGTTGAGACTTGAGAGC | 58.198 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
846 | 853 | 1.337260 | CCGGTGGTTGAGACTTGAGAG | 60.337 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
847 | 854 | 0.679505 | CCGGTGGTTGAGACTTGAGA | 59.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
848 | 855 | 0.951040 | GCCGGTGGTTGAGACTTGAG | 60.951 | 60.000 | 1.90 | 0.00 | 0.00 | 3.02 |
849 | 856 | 1.070786 | GCCGGTGGTTGAGACTTGA | 59.929 | 57.895 | 1.90 | 0.00 | 0.00 | 3.02 |
850 | 857 | 2.317609 | CGCCGGTGGTTGAGACTTG | 61.318 | 63.158 | 7.26 | 0.00 | 0.00 | 3.16 |
851 | 858 | 2.030562 | CGCCGGTGGTTGAGACTT | 59.969 | 61.111 | 7.26 | 0.00 | 0.00 | 3.01 |
852 | 859 | 2.436087 | CTTCGCCGGTGGTTGAGACT | 62.436 | 60.000 | 16.49 | 0.00 | 0.00 | 3.24 |
853 | 860 | 2.027625 | CTTCGCCGGTGGTTGAGAC | 61.028 | 63.158 | 16.49 | 0.00 | 0.00 | 3.36 |
881 | 888 | 3.241530 | TCGCCCCTGTGTTGAGCT | 61.242 | 61.111 | 0.00 | 0.00 | 0.00 | 4.09 |
964 | 979 | 2.583520 | GAGCTGGAGCACCTGGAG | 59.416 | 66.667 | 0.00 | 0.00 | 45.16 | 3.86 |
983 | 1001 | 1.275666 | CATAGTGGTGGGTCAGTGGA | 58.724 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1125 | 1143 | 2.683933 | TGGAAGGAGGCGGAGGAC | 60.684 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1126 | 1144 | 2.364317 | CTGGAAGGAGGCGGAGGA | 60.364 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
1470 | 1537 | 1.802069 | AAGCGCAAAAGGTCTCTCTC | 58.198 | 50.000 | 11.47 | 0.00 | 0.00 | 3.20 |
1471 | 1538 | 1.876156 | CAAAGCGCAAAAGGTCTCTCT | 59.124 | 47.619 | 11.47 | 0.00 | 0.00 | 3.10 |
1472 | 1539 | 1.664302 | GCAAAGCGCAAAAGGTCTCTC | 60.664 | 52.381 | 11.47 | 0.00 | 41.79 | 3.20 |
1473 | 1540 | 0.312102 | GCAAAGCGCAAAAGGTCTCT | 59.688 | 50.000 | 11.47 | 0.00 | 41.79 | 3.10 |
1546 | 1613 | 3.871594 | AGCTGTTGTTCTACACACAAGAC | 59.128 | 43.478 | 0.00 | 0.00 | 34.79 | 3.01 |
1592 | 1659 | 4.243007 | AGGGAGCGTTTGAAAATTGAAG | 57.757 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
1626 | 1693 | 2.165998 | AGAATTCAGAGCAACAAGGGC | 58.834 | 47.619 | 8.44 | 0.00 | 0.00 | 5.19 |
1743 | 1810 | 3.771479 | TGCACAGATCTCCAAGTCTACAT | 59.229 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
1747 | 1814 | 2.028294 | CACTGCACAGATCTCCAAGTCT | 60.028 | 50.000 | 4.31 | 0.00 | 0.00 | 3.24 |
1788 | 1863 | 3.808728 | TGTCAGACAAGAAAAGGAGGTG | 58.191 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
1866 | 2046 | 7.141100 | TCAAAACCGACCAAAGAGATAAATC | 57.859 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1870 | 2050 | 7.229707 | TGAAAATCAAAACCGACCAAAGAGATA | 59.770 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
1907 | 2087 | 5.915196 | GCTCAAATCAAACTAACTGAACCAC | 59.085 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2064 | 2245 | 7.615365 | TCCTGTCATCAAATTAATAAAGCACCT | 59.385 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
2098 | 2279 | 2.512692 | TGCTAAATCACAGTGGCCAT | 57.487 | 45.000 | 9.72 | 0.00 | 0.00 | 4.40 |
2128 | 2310 | 4.122046 | GCAAAAAGCAAGTGGAGTTGAAT | 58.878 | 39.130 | 0.00 | 0.00 | 44.79 | 2.57 |
2142 | 2324 | 1.202452 | ACCACAGCAAGAGCAAAAAGC | 60.202 | 47.619 | 0.00 | 0.00 | 45.49 | 3.51 |
2207 | 2389 | 6.098838 | TGGCAAGACTATCACTCTGTTGATAT | 59.901 | 38.462 | 0.00 | 0.00 | 37.74 | 1.63 |
2339 | 2523 | 1.522668 | CAGACGAATGGCCTGTGAAA | 58.477 | 50.000 | 3.32 | 0.00 | 0.00 | 2.69 |
2354 | 2538 | 0.623723 | TGGCTATTGAACCCCCAGAC | 59.376 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2513 | 2697 | 7.821595 | CATGATGAAATGCAAAATACACTGT | 57.178 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2577 | 2761 | 7.398618 | AGACTGAATTTGTTCTCTAGAGGATGA | 59.601 | 37.037 | 19.67 | 1.12 | 0.00 | 2.92 |
2801 | 2985 | 3.735591 | TGTCAAGAAAAGGTAAGTCCCG | 58.264 | 45.455 | 0.00 | 0.00 | 36.75 | 5.14 |
2921 | 3105 | 0.165944 | CACTTAAACTTCTGGCGGCG | 59.834 | 55.000 | 0.51 | 0.51 | 0.00 | 6.46 |
3110 | 3294 | 6.264292 | ACATAACAGATGTTTACAGTGGCAAA | 59.736 | 34.615 | 3.14 | 0.00 | 39.31 | 3.68 |
4004 | 4190 | 0.529337 | ATCCAAGTGCATCGCTCTCG | 60.529 | 55.000 | 0.00 | 0.00 | 30.88 | 4.04 |
4121 | 4307 | 1.699656 | GCACAAGTCTCGCGATGCAT | 61.700 | 55.000 | 21.54 | 0.00 | 33.27 | 3.96 |
4145 | 4331 | 4.487714 | TGCCACGGAGAAATTCTCTTAT | 57.512 | 40.909 | 20.82 | 5.80 | 42.95 | 1.73 |
4209 | 4395 | 6.455647 | TGATAGTTCAGGCTTACAATATCCG | 58.544 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4271 | 4459 | 9.014297 | ACTGTTTAGCATTTTAAATAGTCTGCT | 57.986 | 29.630 | 7.69 | 7.69 | 39.34 | 4.24 |
4272 | 4460 | 9.626045 | AACTGTTTAGCATTTTAAATAGTCTGC | 57.374 | 29.630 | 7.90 | 0.00 | 41.28 | 4.26 |
4314 | 4502 | 1.747355 | GAGATGAAACATGGGCCTGTG | 59.253 | 52.381 | 4.53 | 6.51 | 0.00 | 3.66 |
4360 | 4549 | 7.392953 | ACAAAAGGGTCAAAACATGAAAATTGT | 59.607 | 29.630 | 0.00 | 0.00 | 40.50 | 2.71 |
4364 | 4553 | 6.467677 | TCACAAAAGGGTCAAAACATGAAAA | 58.532 | 32.000 | 0.00 | 0.00 | 40.50 | 2.29 |
4368 | 4557 | 5.874261 | AGTTTCACAAAAGGGTCAAAACATG | 59.126 | 36.000 | 0.00 | 0.00 | 31.06 | 3.21 |
4369 | 4558 | 6.048732 | AGTTTCACAAAAGGGTCAAAACAT | 57.951 | 33.333 | 0.00 | 0.00 | 31.06 | 2.71 |
4370 | 4559 | 5.476091 | AGTTTCACAAAAGGGTCAAAACA | 57.524 | 34.783 | 0.00 | 0.00 | 31.06 | 2.83 |
4379 | 4568 | 7.649306 | CAGATCCTGTTAAAGTTTCACAAAAGG | 59.351 | 37.037 | 4.30 | 2.45 | 0.00 | 3.11 |
4380 | 4569 | 8.405531 | TCAGATCCTGTTAAAGTTTCACAAAAG | 58.594 | 33.333 | 4.30 | 0.00 | 32.61 | 2.27 |
4407 | 4596 | 4.464597 | TCCCAAAATTATTTCGAACCAGGG | 59.535 | 41.667 | 0.00 | 1.43 | 0.00 | 4.45 |
4421 | 4610 | 9.232473 | GTAGTAAAAGAGTCAGATCCCAAAATT | 57.768 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4423 | 4612 | 7.878127 | CAGTAGTAAAAGAGTCAGATCCCAAAA | 59.122 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
4427 | 4616 | 5.128008 | AGCAGTAGTAAAAGAGTCAGATCCC | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4437 | 4626 | 7.013464 | GCCAGAGACTATAGCAGTAGTAAAAGA | 59.987 | 40.741 | 0.00 | 0.00 | 37.72 | 2.52 |
4439 | 4628 | 6.238676 | CGCCAGAGACTATAGCAGTAGTAAAA | 60.239 | 42.308 | 0.00 | 0.00 | 37.72 | 1.52 |
4443 | 4632 | 3.142951 | CGCCAGAGACTATAGCAGTAGT | 58.857 | 50.000 | 0.00 | 1.16 | 37.72 | 2.73 |
4448 | 4637 | 2.505405 | CTACCGCCAGAGACTATAGCA | 58.495 | 52.381 | 0.00 | 0.00 | 0.00 | 3.49 |
4450 | 4639 | 3.420300 | TCCTACCGCCAGAGACTATAG | 57.580 | 52.381 | 0.00 | 0.00 | 0.00 | 1.31 |
4451 | 4640 | 5.221986 | TGTTATCCTACCGCCAGAGACTATA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 1.31 |
4457 | 4646 | 2.032620 | AGTGTTATCCTACCGCCAGAG | 58.967 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
4526 | 4715 | 7.795272 | GCGGTAGGTATTTTTCATGTTATAACG | 59.205 | 37.037 | 10.92 | 0.00 | 0.00 | 3.18 |
4529 | 4718 | 7.281098 | TGGCGGTAGGTATTTTTCATGTTATA | 58.719 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
4536 | 4725 | 4.400120 | ACTTTGGCGGTAGGTATTTTTCA | 58.600 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
4537 | 4726 | 4.698780 | AGACTTTGGCGGTAGGTATTTTTC | 59.301 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
4538 | 4727 | 4.659115 | AGACTTTGGCGGTAGGTATTTTT | 58.341 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
4539 | 4728 | 4.296621 | AGACTTTGGCGGTAGGTATTTT | 57.703 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
4540 | 4729 | 3.994931 | AGACTTTGGCGGTAGGTATTT | 57.005 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
4541 | 4730 | 3.677976 | CGAAGACTTTGGCGGTAGGTATT | 60.678 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
4542 | 4731 | 2.159142 | CGAAGACTTTGGCGGTAGGTAT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4543 | 4732 | 1.203052 | CGAAGACTTTGGCGGTAGGTA | 59.797 | 52.381 | 0.00 | 0.00 | 0.00 | 3.08 |
4544 | 4733 | 0.037605 | CGAAGACTTTGGCGGTAGGT | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
4545 | 4734 | 0.739813 | CCGAAGACTTTGGCGGTAGG | 60.740 | 60.000 | 8.61 | 0.00 | 38.99 | 3.18 |
4546 | 4735 | 2.750815 | CCGAAGACTTTGGCGGTAG | 58.249 | 57.895 | 8.61 | 0.00 | 38.99 | 3.18 |
4555 | 4744 | 0.896940 | TGGTCTACCGCCGAAGACTT | 60.897 | 55.000 | 15.81 | 0.00 | 41.53 | 3.01 |
4556 | 4745 | 0.683504 | ATGGTCTACCGCCGAAGACT | 60.684 | 55.000 | 15.81 | 0.00 | 41.53 | 3.24 |
4562 | 4751 | 1.403780 | GCCTATAATGGTCTACCGCCG | 60.404 | 57.143 | 0.00 | 0.00 | 39.43 | 6.46 |
4580 | 4769 | 7.118245 | CCTCATTTTCAAAGAAAAGGTAATGCC | 59.882 | 37.037 | 14.12 | 0.00 | 37.58 | 4.40 |
4581 | 4770 | 7.657354 | ACCTCATTTTCAAAGAAAAGGTAATGC | 59.343 | 33.333 | 14.12 | 0.00 | 0.00 | 3.56 |
4582 | 4771 | 9.196552 | GACCTCATTTTCAAAGAAAAGGTAATG | 57.803 | 33.333 | 14.12 | 6.60 | 0.00 | 1.90 |
4583 | 4772 | 8.082242 | CGACCTCATTTTCAAAGAAAAGGTAAT | 58.918 | 33.333 | 14.12 | 4.03 | 0.00 | 1.89 |
4584 | 4773 | 7.422399 | CGACCTCATTTTCAAAGAAAAGGTAA | 58.578 | 34.615 | 14.12 | 0.00 | 0.00 | 2.85 |
4617 | 4806 | 2.309501 | GCAAAACGCCACCATGCAC | 61.310 | 57.895 | 0.00 | 0.00 | 37.00 | 4.57 |
4624 | 4813 | 2.411409 | CCACATAATTGCAAAACGCCAC | 59.589 | 45.455 | 1.71 | 0.00 | 41.33 | 5.01 |
4633 | 4835 | 3.263261 | CATTTGCAGCCACATAATTGCA | 58.737 | 40.909 | 0.00 | 0.00 | 44.09 | 4.08 |
4634 | 4836 | 3.062909 | CACATTTGCAGCCACATAATTGC | 59.937 | 43.478 | 0.00 | 0.00 | 37.09 | 3.56 |
4635 | 4837 | 4.850859 | CACATTTGCAGCCACATAATTG | 57.149 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
4661 | 4863 | 3.020627 | GCTAGGCAGCGCATGAAG | 58.979 | 61.111 | 11.47 | 0.82 | 38.22 | 3.02 |
4704 | 4917 | 5.276820 | GCTTGGACATGCAACAAACTTAAAC | 60.277 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4716 | 4929 | 1.742761 | GCTTCTAGCTTGGACATGCA | 58.257 | 50.000 | 11.93 | 0.00 | 38.45 | 3.96 |
4745 | 4958 | 6.099701 | ACCCACATGCATCAGTACTATTAGAA | 59.900 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
4746 | 4959 | 5.602561 | ACCCACATGCATCAGTACTATTAGA | 59.397 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4747 | 4960 | 5.698089 | CACCCACATGCATCAGTACTATTAG | 59.302 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
4748 | 4961 | 5.365314 | TCACCCACATGCATCAGTACTATTA | 59.635 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
4749 | 4962 | 4.164030 | TCACCCACATGCATCAGTACTATT | 59.836 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
4750 | 4963 | 3.711190 | TCACCCACATGCATCAGTACTAT | 59.289 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
4756 | 4969 | 2.014857 | CTTCTCACCCACATGCATCAG | 58.985 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
4772 | 4985 | 4.344938 | TCCATCTCTCCCTTTCTCTTCT | 57.655 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
4773 | 4986 | 4.743348 | GCATCCATCTCTCCCTTTCTCTTC | 60.743 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
4801 | 5014 | 9.195411 | CAGTAACATTCATTTGCAGTAACATTT | 57.805 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
4802 | 5015 | 7.329226 | GCAGTAACATTCATTTGCAGTAACATT | 59.671 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
4808 | 5021 | 4.852134 | TGCAGTAACATTCATTTGCAGT | 57.148 | 36.364 | 0.00 | 0.00 | 36.71 | 4.40 |
4814 | 5027 | 5.772825 | AACACACTGCAGTAACATTCATT | 57.227 | 34.783 | 21.20 | 2.95 | 0.00 | 2.57 |
4816 | 5029 | 5.606505 | TCTAACACACTGCAGTAACATTCA | 58.393 | 37.500 | 21.20 | 0.00 | 0.00 | 2.57 |
4817 | 5030 | 6.539649 | TTCTAACACACTGCAGTAACATTC | 57.460 | 37.500 | 21.20 | 0.00 | 0.00 | 2.67 |
4818 | 5031 | 6.238648 | GGTTTCTAACACACTGCAGTAACATT | 60.239 | 38.462 | 21.20 | 13.70 | 0.00 | 2.71 |
4819 | 5032 | 5.238650 | GGTTTCTAACACACTGCAGTAACAT | 59.761 | 40.000 | 21.20 | 9.23 | 0.00 | 2.71 |
4820 | 5033 | 4.573201 | GGTTTCTAACACACTGCAGTAACA | 59.427 | 41.667 | 21.20 | 2.37 | 0.00 | 2.41 |
4821 | 5034 | 4.573201 | TGGTTTCTAACACACTGCAGTAAC | 59.427 | 41.667 | 21.20 | 16.72 | 0.00 | 2.50 |
4822 | 5035 | 4.573201 | GTGGTTTCTAACACACTGCAGTAA | 59.427 | 41.667 | 21.20 | 5.35 | 37.54 | 2.24 |
4823 | 5036 | 4.124238 | GTGGTTTCTAACACACTGCAGTA | 58.876 | 43.478 | 21.20 | 1.97 | 37.54 | 2.74 |
4824 | 5037 | 2.943033 | GTGGTTTCTAACACACTGCAGT | 59.057 | 45.455 | 15.25 | 15.25 | 37.54 | 4.40 |
4825 | 5038 | 2.032894 | CGTGGTTTCTAACACACTGCAG | 60.033 | 50.000 | 13.48 | 13.48 | 37.45 | 4.41 |
4832 | 5297 | 1.454653 | GCGAGACGTGGTTTCTAACAC | 59.545 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
4836 | 5301 | 1.990799 | CATGCGAGACGTGGTTTCTA | 58.009 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4840 | 5305 | 2.030412 | TGCATGCGAGACGTGGTT | 59.970 | 55.556 | 14.09 | 0.00 | 35.67 | 3.67 |
4845 | 5310 | 1.080435 | ATGTGAGTGCATGCGAGACG | 61.080 | 55.000 | 14.09 | 0.00 | 0.00 | 4.18 |
4846 | 5311 | 0.372679 | CATGTGAGTGCATGCGAGAC | 59.627 | 55.000 | 14.09 | 5.82 | 39.59 | 3.36 |
4847 | 5312 | 2.758497 | CATGTGAGTGCATGCGAGA | 58.242 | 52.632 | 14.09 | 0.00 | 39.59 | 4.04 |
4906 | 5371 | 2.181975 | GTAGGCTGTGTAACCCTACCA | 58.818 | 52.381 | 0.00 | 0.00 | 42.46 | 3.25 |
4907 | 5372 | 2.975732 | GTAGGCTGTGTAACCCTACC | 57.024 | 55.000 | 0.00 | 0.00 | 42.46 | 3.18 |
4922 | 5387 | 1.810412 | GCCAGAATACTTGGCGGTAGG | 60.810 | 57.143 | 0.00 | 0.00 | 39.06 | 3.18 |
4923 | 5388 | 1.583054 | GCCAGAATACTTGGCGGTAG | 58.417 | 55.000 | 0.00 | 0.00 | 39.06 | 3.18 |
4933 | 5398 | 3.679824 | AATAGCCTACCGCCAGAATAC | 57.320 | 47.619 | 0.00 | 0.00 | 38.78 | 1.89 |
4936 | 5401 | 2.639065 | CAAAATAGCCTACCGCCAGAA | 58.361 | 47.619 | 0.00 | 0.00 | 38.78 | 3.02 |
4944 | 5409 | 5.270853 | CCATTAACGTGCAAAATAGCCTAC | 58.729 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
4949 | 5414 | 3.105203 | CGGCCATTAACGTGCAAAATAG | 58.895 | 45.455 | 2.24 | 0.00 | 0.00 | 1.73 |
4959 | 5424 | 3.086309 | CCGTCACGGCCATTAACG | 58.914 | 61.111 | 1.50 | 6.77 | 41.17 | 3.18 |
4970 | 5436 | 0.096454 | GGATTTAACTGCGCCGTCAC | 59.904 | 55.000 | 4.51 | 0.00 | 0.00 | 3.67 |
4986 | 5452 | 3.288964 | CCAGAGTACTTGACGGTAGGAT | 58.711 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4994 | 5461 | 3.163467 | ACCTACCACCAGAGTACTTGAC | 58.837 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4995 | 5462 | 3.537795 | ACCTACCACCAGAGTACTTGA | 57.462 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
4998 | 5465 | 3.255634 | ACAACCTACCACCAGAGTACT | 57.744 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
4999 | 5466 | 6.567959 | GTTATACAACCTACCACCAGAGTAC | 58.432 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5000 | 5467 | 6.780457 | GTTATACAACCTACCACCAGAGTA | 57.220 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
5019 | 5486 | 1.063114 | AGTCTCTGGCGGTAGGGTTAT | 60.063 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
5034 | 5501 | 3.814005 | TTTTCCTACCGCCATAGTCTC | 57.186 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
5077 | 5544 | 2.093658 | GCTGGATCTAACCCTCGTTTGA | 60.094 | 50.000 | 0.00 | 0.00 | 37.97 | 2.69 |
5083 | 5550 | 5.360649 | AAGTTTAGCTGGATCTAACCCTC | 57.639 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
5091 | 5558 | 8.967918 | ACCCTTTTATTAAAGTTTAGCTGGATC | 58.032 | 33.333 | 0.00 | 0.00 | 39.29 | 3.36 |
5095 | 5562 | 9.974980 | TTTGACCCTTTTATTAAAGTTTAGCTG | 57.025 | 29.630 | 0.00 | 0.00 | 39.29 | 4.24 |
5103 | 5570 | 8.859517 | TTCGTGTTTTGACCCTTTTATTAAAG | 57.140 | 30.769 | 0.00 | 0.00 | 40.38 | 1.85 |
5107 | 5574 | 8.608317 | CAATTTTCGTGTTTTGACCCTTTTATT | 58.392 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5109 | 5576 | 7.097834 | ACAATTTTCGTGTTTTGACCCTTTTA | 58.902 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
5126 | 5593 | 3.441500 | ACCAGAGGGAGGACAATTTTC | 57.558 | 47.619 | 0.00 | 0.00 | 38.05 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.