Multiple sequence alignment - TraesCS5D01G208100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G208100 chr5D 100.000 9123 0 0 1 9123 314429489 314420367 0.000000e+00 16848.0
1 TraesCS5D01G208100 chr5D 93.413 167 11 0 7334 7500 150835734 150835568 1.970000e-61 248.0
2 TraesCS5D01G208100 chr5A 95.129 8335 277 49 252 8519 408198803 408190531 0.000000e+00 13023.0
3 TraesCS5D01G208100 chr5A 94.611 167 8 1 7342 7507 320214402 320214236 3.270000e-64 257.0
4 TraesCS5D01G208100 chr5A 94.012 167 10 0 7334 7500 653299435 653299601 4.230000e-63 254.0
5 TraesCS5D01G208100 chr5B 96.399 5054 146 19 678 5712 362137677 362132641 0.000000e+00 8292.0
6 TraesCS5D01G208100 chr5B 94.282 1399 67 8 7501 8897 362130671 362129284 0.000000e+00 2128.0
7 TraesCS5D01G208100 chr5B 96.069 1272 25 7 5708 6959 362132482 362131216 0.000000e+00 2049.0
8 TraesCS5D01G208100 chr5B 95.812 382 15 1 6959 7339 362131054 362130673 4.680000e-172 616.0
9 TraesCS5D01G208100 chr5B 95.349 43 1 1 9082 9123 362129219 362129177 5.910000e-07 67.6
10 TraesCS5D01G208100 chr5B 100.000 30 0 0 9016 9045 87143298 87143269 1.000000e-03 56.5
11 TraesCS5D01G208100 chr7A 89.474 741 71 6 1300 2038 8735547 8736282 0.000000e+00 929.0
12 TraesCS5D01G208100 chr2B 86.511 771 83 7 1300 2068 105378624 105377873 0.000000e+00 828.0
13 TraesCS5D01G208100 chr2B 94.118 34 2 0 9012 9045 655622369 655622402 1.700000e-02 52.8
14 TraesCS5D01G208100 chr4A 94.012 167 9 1 7335 7500 97529989 97530155 1.520000e-62 252.0
15 TraesCS5D01G208100 chr2A 92.529 174 12 1 7339 7512 184561154 184561326 1.970000e-61 248.0
16 TraesCS5D01G208100 chr3D 92.941 170 11 1 7331 7500 87926168 87926000 7.070000e-61 246.0
17 TraesCS5D01G208100 chr3D 100.000 29 0 0 9017 9045 175663851 175663823 5.000000e-03 54.7
18 TraesCS5D01G208100 chr3B 92.442 172 13 0 7329 7500 654649701 654649872 7.070000e-61 246.0
19 TraesCS5D01G208100 chr4B 92.857 168 10 2 7342 7509 532435159 532434994 9.150000e-60 243.0
20 TraesCS5D01G208100 chr4B 100.000 29 0 0 9017 9045 301700665 301700637 5.000000e-03 54.7
21 TraesCS5D01G208100 chr4B 100.000 29 0 0 9017 9045 301727215 301727187 5.000000e-03 54.7
22 TraesCS5D01G208100 chr4B 100.000 29 0 0 9017 9045 301781539 301781511 5.000000e-03 54.7
23 TraesCS5D01G208100 chr4B 91.892 37 3 0 9009 9045 632323184 632323220 1.700000e-02 52.8
24 TraesCS5D01G208100 chr3A 94.595 37 1 1 9009 9045 700041288 700041253 1.000000e-03 56.5
25 TraesCS5D01G208100 chr2D 94.444 36 0 1 9012 9045 27081372 27081337 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G208100 chr5D 314420367 314429489 9122 True 16848.00 16848 100.0000 1 9123 1 chr5D.!!$R2 9122
1 TraesCS5D01G208100 chr5A 408190531 408198803 8272 True 13023.00 13023 95.1290 252 8519 1 chr5A.!!$R2 8267
2 TraesCS5D01G208100 chr5B 362129177 362137677 8500 True 2630.52 8292 95.5822 678 9123 5 chr5B.!!$R2 8445
3 TraesCS5D01G208100 chr7A 8735547 8736282 735 False 929.00 929 89.4740 1300 2038 1 chr7A.!!$F1 738
4 TraesCS5D01G208100 chr2B 105377873 105378624 751 True 828.00 828 86.5110 1300 2068 1 chr2B.!!$R1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.035915 GAGAGGCCAAGGTGGAGTTC 60.036 60.000 5.01 0.0 40.96 3.01 F
59 60 0.036875 GGAGTTCCACCTCACCCAAG 59.963 60.000 0.00 0.0 35.64 3.61 F
247 248 0.047176 AGAGGAGGAGGAGGAGGAGA 59.953 60.000 0.00 0.0 0.00 3.71 F
283 284 0.321671 CACCTCCAATGACCACGAGT 59.678 55.000 0.00 0.0 0.00 4.18 F
533 543 0.462047 CCACTCCGGTTGTAGATGCC 60.462 60.000 0.00 0.0 0.00 4.40 F
644 654 1.147376 TGTGCACCCACACCTACAC 59.853 57.895 15.69 0.0 46.51 2.90 F
2273 2304 1.244816 GGTTAGTGACTGGCAAACCC 58.755 55.000 5.90 0.0 33.22 4.11 F
3592 3635 1.001048 GCATGTGAAACTCTTGCTGCA 60.001 47.619 0.00 0.0 38.04 4.41 F
5437 5484 0.464036 TATGCGCCGAGTGGAAAGAT 59.536 50.000 4.18 0.0 37.49 2.40 F
6413 6645 0.627451 TGGGATTCTCCATGCTTGCT 59.373 50.000 0.00 0.0 38.64 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1534 2.238646 TCATCAGCTAAATCCCCGTGTT 59.761 45.455 0.00 0.00 0.00 3.32 R
1516 1536 2.620251 TCATCAGCTAAATCCCCGTG 57.380 50.000 0.00 0.00 0.00 4.94 R
2087 2118 2.917971 GTCGCTAGTCTTTGTAGCACAG 59.082 50.000 3.24 0.00 42.69 3.66 R
2273 2304 1.009335 CAATCGCCATGCACATCGG 60.009 57.895 0.00 0.00 0.00 4.18 R
2331 2362 0.990374 ACTGGCTGAATTGGCTCTCT 59.010 50.000 0.00 0.00 0.00 3.10 R
2398 2432 2.573462 ACATCAGAGAAGGCCTGCTTTA 59.427 45.455 16.72 3.66 0.00 1.85 R
3868 3911 1.064389 GGAAAGAACAGATGGAGGGGG 60.064 57.143 0.00 0.00 0.00 5.40 R
5517 5564 0.741221 GTTGGCCCGTAGAAGAGCAG 60.741 60.000 0.00 0.00 0.00 4.24 R
6979 7373 0.452784 GCCGAACAACGACAGCAATC 60.453 55.000 0.00 0.00 45.77 2.67 R
8352 8760 0.099968 CGTCCAAATCAGCATGCAGG 59.900 55.000 21.98 11.90 34.76 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.354662 AGGGTTTTCCTACTAGTGAGAGG 58.645 47.826 5.39 4.61 45.98 3.69
33 34 3.118702 GGGTTTTCCTACTAGTGAGAGGC 60.119 52.174 5.39 0.00 40.46 4.70
34 35 3.118702 GGTTTTCCTACTAGTGAGAGGCC 60.119 52.174 5.39 0.00 36.94 5.19
35 36 3.468071 TTTCCTACTAGTGAGAGGCCA 57.532 47.619 5.01 0.00 0.00 5.36
36 37 3.468071 TTCCTACTAGTGAGAGGCCAA 57.532 47.619 5.01 0.00 0.00 4.52
37 38 3.019799 TCCTACTAGTGAGAGGCCAAG 57.980 52.381 5.01 0.00 0.00 3.61
38 39 2.035632 CCTACTAGTGAGAGGCCAAGG 58.964 57.143 5.01 0.00 0.00 3.61
39 40 2.624557 CCTACTAGTGAGAGGCCAAGGT 60.625 54.545 5.01 0.00 0.00 3.50
40 41 1.270907 ACTAGTGAGAGGCCAAGGTG 58.729 55.000 5.01 0.00 0.00 4.00
41 42 0.539051 CTAGTGAGAGGCCAAGGTGG 59.461 60.000 5.01 0.00 41.55 4.61
42 43 0.116342 TAGTGAGAGGCCAAGGTGGA 59.884 55.000 5.01 0.00 40.96 4.02
43 44 1.197430 AGTGAGAGGCCAAGGTGGAG 61.197 60.000 5.01 0.00 40.96 3.86
44 45 1.152030 TGAGAGGCCAAGGTGGAGT 60.152 57.895 5.01 0.00 40.96 3.85
45 46 0.768221 TGAGAGGCCAAGGTGGAGTT 60.768 55.000 5.01 0.00 40.96 3.01
46 47 0.035915 GAGAGGCCAAGGTGGAGTTC 60.036 60.000 5.01 0.00 40.96 3.01
47 48 1.002011 GAGGCCAAGGTGGAGTTCC 60.002 63.158 5.01 0.00 40.96 3.62
48 49 1.774217 AGGCCAAGGTGGAGTTCCA 60.774 57.895 5.01 0.00 40.96 3.53
56 57 3.900888 TGGAGTTCCACCTCACCC 58.099 61.111 0.00 0.00 42.01 4.61
57 58 1.074090 TGGAGTTCCACCTCACCCA 60.074 57.895 0.00 0.00 42.01 4.51
58 59 0.696143 TGGAGTTCCACCTCACCCAA 60.696 55.000 0.00 0.00 42.01 4.12
59 60 0.036875 GGAGTTCCACCTCACCCAAG 59.963 60.000 0.00 0.00 35.64 3.61
60 61 0.606673 GAGTTCCACCTCACCCAAGC 60.607 60.000 0.00 0.00 0.00 4.01
61 62 1.603739 GTTCCACCTCACCCAAGCC 60.604 63.158 0.00 0.00 0.00 4.35
62 63 1.774217 TTCCACCTCACCCAAGCCT 60.774 57.895 0.00 0.00 0.00 4.58
63 64 0.474854 TTCCACCTCACCCAAGCCTA 60.475 55.000 0.00 0.00 0.00 3.93
64 65 0.909610 TCCACCTCACCCAAGCCTAG 60.910 60.000 0.00 0.00 0.00 3.02
65 66 1.604378 CACCTCACCCAAGCCTAGG 59.396 63.158 3.67 3.67 0.00 3.02
66 67 0.909610 CACCTCACCCAAGCCTAGGA 60.910 60.000 14.75 0.00 0.00 2.94
67 68 0.618968 ACCTCACCCAAGCCTAGGAG 60.619 60.000 14.75 0.60 0.00 3.69
68 69 1.341156 CCTCACCCAAGCCTAGGAGG 61.341 65.000 14.75 10.67 38.80 4.30
69 70 0.618968 CTCACCCAAGCCTAGGAGGT 60.619 60.000 14.75 10.17 37.80 3.85
70 71 1.604378 CACCCAAGCCTAGGAGGTG 59.396 63.158 14.75 18.14 41.84 4.00
71 72 1.616628 ACCCAAGCCTAGGAGGTGG 60.617 63.158 14.75 15.28 37.80 4.61
72 73 1.306997 CCCAAGCCTAGGAGGTGGA 60.307 63.158 21.50 0.00 34.36 4.02
73 74 1.341156 CCCAAGCCTAGGAGGTGGAG 61.341 65.000 21.50 11.40 34.36 3.86
74 75 1.341156 CCAAGCCTAGGAGGTGGAGG 61.341 65.000 14.75 0.00 34.36 4.30
76 77 3.541713 GCCTAGGAGGTGGAGGCG 61.542 72.222 14.75 0.00 45.94 5.52
77 78 3.541713 CCTAGGAGGTGGAGGCGC 61.542 72.222 1.05 0.00 0.00 6.53
78 79 2.759973 CTAGGAGGTGGAGGCGCA 60.760 66.667 10.83 0.00 0.00 6.09
79 80 2.759973 TAGGAGGTGGAGGCGCAG 60.760 66.667 10.83 0.00 0.00 5.18
104 105 4.386245 CGGAGCAAGCGTACTCTC 57.614 61.111 0.00 0.00 33.29 3.20
105 106 1.506718 CGGAGCAAGCGTACTCTCA 59.493 57.895 0.00 0.00 33.29 3.27
106 107 0.101399 CGGAGCAAGCGTACTCTCAT 59.899 55.000 0.00 0.00 33.29 2.90
107 108 1.846541 GGAGCAAGCGTACTCTCATC 58.153 55.000 0.00 0.00 33.29 2.92
108 109 1.471964 GAGCAAGCGTACTCTCATCG 58.528 55.000 0.00 0.00 0.00 3.84
109 110 0.811915 AGCAAGCGTACTCTCATCGT 59.188 50.000 0.00 0.00 0.00 3.73
110 111 1.202582 AGCAAGCGTACTCTCATCGTT 59.797 47.619 0.00 0.00 0.00 3.85
111 112 1.321743 GCAAGCGTACTCTCATCGTTG 59.678 52.381 0.00 0.00 0.00 4.10
112 113 2.863739 CAAGCGTACTCTCATCGTTGA 58.136 47.619 0.00 0.00 0.00 3.18
113 114 3.439293 CAAGCGTACTCTCATCGTTGAT 58.561 45.455 0.00 0.00 0.00 2.57
114 115 3.341857 AGCGTACTCTCATCGTTGATC 57.658 47.619 0.00 0.00 0.00 2.92
115 116 2.033550 AGCGTACTCTCATCGTTGATCC 59.966 50.000 0.00 0.00 0.00 3.36
116 117 2.859032 GCGTACTCTCATCGTTGATCCC 60.859 54.545 0.00 0.00 0.00 3.85
117 118 2.602456 CGTACTCTCATCGTTGATCCCG 60.602 54.545 0.00 0.00 0.00 5.14
118 119 0.747255 ACTCTCATCGTTGATCCCGG 59.253 55.000 0.00 0.00 0.00 5.73
119 120 0.598680 CTCTCATCGTTGATCCCGGC 60.599 60.000 0.00 0.00 0.00 6.13
120 121 1.595382 CTCATCGTTGATCCCGGCC 60.595 63.158 0.00 0.00 0.00 6.13
121 122 2.032860 CTCATCGTTGATCCCGGCCT 62.033 60.000 0.00 0.00 0.00 5.19
122 123 1.595382 CATCGTTGATCCCGGCCTC 60.595 63.158 0.00 0.00 0.00 4.70
123 124 2.063979 ATCGTTGATCCCGGCCTCA 61.064 57.895 0.00 0.00 0.00 3.86
124 125 1.410850 ATCGTTGATCCCGGCCTCAT 61.411 55.000 0.00 0.00 0.00 2.90
125 126 1.889105 CGTTGATCCCGGCCTCATG 60.889 63.158 0.00 0.00 0.00 3.07
126 127 1.526887 GTTGATCCCGGCCTCATGA 59.473 57.895 0.00 0.00 0.00 3.07
127 128 0.109342 GTTGATCCCGGCCTCATGAT 59.891 55.000 0.00 0.00 0.00 2.45
128 129 0.846015 TTGATCCCGGCCTCATGATT 59.154 50.000 0.00 0.00 0.00 2.57
129 130 1.728323 TGATCCCGGCCTCATGATTA 58.272 50.000 0.00 0.00 0.00 1.75
130 131 2.054021 TGATCCCGGCCTCATGATTAA 58.946 47.619 0.00 0.00 0.00 1.40
131 132 2.441375 TGATCCCGGCCTCATGATTAAA 59.559 45.455 0.00 0.00 0.00 1.52
132 133 3.117701 TGATCCCGGCCTCATGATTAAAA 60.118 43.478 0.00 0.00 0.00 1.52
133 134 3.374042 TCCCGGCCTCATGATTAAAAA 57.626 42.857 0.00 0.00 0.00 1.94
134 135 3.020984 TCCCGGCCTCATGATTAAAAAC 58.979 45.455 0.00 0.00 0.00 2.43
135 136 2.100749 CCCGGCCTCATGATTAAAAACC 59.899 50.000 0.00 0.00 0.00 3.27
136 137 2.757868 CCGGCCTCATGATTAAAAACCA 59.242 45.455 0.00 0.00 0.00 3.67
137 138 3.384467 CCGGCCTCATGATTAAAAACCAT 59.616 43.478 0.00 0.00 0.00 3.55
138 139 4.499696 CCGGCCTCATGATTAAAAACCATC 60.500 45.833 0.00 0.00 0.00 3.51
139 140 4.339247 CGGCCTCATGATTAAAAACCATCT 59.661 41.667 0.00 0.00 0.00 2.90
140 141 5.594926 GGCCTCATGATTAAAAACCATCTG 58.405 41.667 0.00 0.00 0.00 2.90
141 142 5.127682 GGCCTCATGATTAAAAACCATCTGT 59.872 40.000 0.00 0.00 0.00 3.41
142 143 6.268566 GCCTCATGATTAAAAACCATCTGTC 58.731 40.000 0.00 0.00 0.00 3.51
143 144 6.681368 GCCTCATGATTAAAAACCATCTGTCC 60.681 42.308 0.00 0.00 0.00 4.02
144 145 6.604795 CCTCATGATTAAAAACCATCTGTCCT 59.395 38.462 0.00 0.00 0.00 3.85
145 146 7.123247 CCTCATGATTAAAAACCATCTGTCCTT 59.877 37.037 0.00 0.00 0.00 3.36
146 147 7.829725 TCATGATTAAAAACCATCTGTCCTTG 58.170 34.615 0.00 0.00 0.00 3.61
147 148 7.669304 TCATGATTAAAAACCATCTGTCCTTGA 59.331 33.333 0.00 0.00 0.00 3.02
148 149 7.214467 TGATTAAAAACCATCTGTCCTTGAC 57.786 36.000 0.00 0.00 0.00 3.18
149 150 7.004086 TGATTAAAAACCATCTGTCCTTGACT 58.996 34.615 0.00 0.00 33.15 3.41
150 151 6.877611 TTAAAAACCATCTGTCCTTGACTC 57.122 37.500 0.00 0.00 33.15 3.36
151 152 4.437682 AAAACCATCTGTCCTTGACTCA 57.562 40.909 0.00 0.00 33.15 3.41
152 153 3.409026 AACCATCTGTCCTTGACTCAC 57.591 47.619 0.00 0.00 33.15 3.51
153 154 2.614259 ACCATCTGTCCTTGACTCACT 58.386 47.619 0.00 0.00 33.15 3.41
154 155 2.564947 ACCATCTGTCCTTGACTCACTC 59.435 50.000 0.00 0.00 33.15 3.51
155 156 2.830923 CCATCTGTCCTTGACTCACTCT 59.169 50.000 0.00 0.00 33.15 3.24
156 157 4.019858 CCATCTGTCCTTGACTCACTCTA 58.980 47.826 0.00 0.00 33.15 2.43
157 158 4.648762 CCATCTGTCCTTGACTCACTCTAT 59.351 45.833 0.00 0.00 33.15 1.98
158 159 5.830457 CCATCTGTCCTTGACTCACTCTATA 59.170 44.000 0.00 0.00 33.15 1.31
159 160 6.238897 CCATCTGTCCTTGACTCACTCTATAC 60.239 46.154 0.00 0.00 33.15 1.47
160 161 5.194432 TCTGTCCTTGACTCACTCTATACC 58.806 45.833 0.00 0.00 33.15 2.73
161 162 3.945921 TGTCCTTGACTCACTCTATACCG 59.054 47.826 0.00 0.00 33.15 4.02
162 163 4.197750 GTCCTTGACTCACTCTATACCGA 58.802 47.826 0.00 0.00 0.00 4.69
163 164 4.639310 GTCCTTGACTCACTCTATACCGAA 59.361 45.833 0.00 0.00 0.00 4.30
164 165 5.299782 GTCCTTGACTCACTCTATACCGAAT 59.700 44.000 0.00 0.00 0.00 3.34
165 166 5.299531 TCCTTGACTCACTCTATACCGAATG 59.700 44.000 0.00 0.00 0.00 2.67
166 167 5.299531 CCTTGACTCACTCTATACCGAATGA 59.700 44.000 0.00 0.00 0.00 2.57
167 168 6.378710 TTGACTCACTCTATACCGAATGAG 57.621 41.667 0.00 0.00 39.56 2.90
168 169 5.681639 TGACTCACTCTATACCGAATGAGA 58.318 41.667 7.27 0.00 37.57 3.27
169 170 5.760743 TGACTCACTCTATACCGAATGAGAG 59.239 44.000 7.27 0.00 41.06 3.20
170 171 5.067273 ACTCACTCTATACCGAATGAGAGG 58.933 45.833 7.27 0.00 39.84 3.69
171 172 5.050126 TCACTCTATACCGAATGAGAGGT 57.950 43.478 3.07 0.00 44.08 3.85
172 173 5.064558 TCACTCTATACCGAATGAGAGGTC 58.935 45.833 3.07 0.00 41.63 3.85
173 174 4.066490 ACTCTATACCGAATGAGAGGTCG 58.934 47.826 3.07 0.00 41.63 4.79
174 175 4.202336 ACTCTATACCGAATGAGAGGTCGA 60.202 45.833 3.07 0.00 41.63 4.20
175 176 4.316645 TCTATACCGAATGAGAGGTCGAG 58.683 47.826 0.00 0.00 41.63 4.04
176 177 1.676746 TACCGAATGAGAGGTCGAGG 58.323 55.000 0.00 0.00 41.63 4.63
177 178 0.323542 ACCGAATGAGAGGTCGAGGT 60.324 55.000 0.00 0.00 39.64 3.85
178 179 0.101399 CCGAATGAGAGGTCGAGGTG 59.899 60.000 0.00 0.00 39.64 4.00
179 180 1.095600 CGAATGAGAGGTCGAGGTGA 58.904 55.000 0.00 0.00 39.64 4.02
180 181 1.472878 CGAATGAGAGGTCGAGGTGAA 59.527 52.381 0.00 0.00 39.64 3.18
181 182 2.732597 CGAATGAGAGGTCGAGGTGAAC 60.733 54.545 0.00 0.00 39.64 3.18
182 183 1.187087 ATGAGAGGTCGAGGTGAACC 58.813 55.000 0.00 0.00 33.45 3.62
183 184 1.241990 TGAGAGGTCGAGGTGAACCG 61.242 60.000 0.00 0.00 42.08 4.44
184 185 1.228490 AGAGGTCGAGGTGAACCGT 60.228 57.895 0.00 0.00 42.08 4.83
185 186 1.212229 GAGGTCGAGGTGAACCGTC 59.788 63.158 0.00 0.00 42.08 4.79
186 187 2.126580 GGTCGAGGTGAACCGTCG 60.127 66.667 12.35 12.35 42.08 5.12
187 188 2.804090 GTCGAGGTGAACCGTCGC 60.804 66.667 13.25 7.63 42.08 5.19
194 195 2.674296 GTGAACCGTCGCCTTATCC 58.326 57.895 0.00 0.00 0.00 2.59
195 196 0.108520 GTGAACCGTCGCCTTATCCA 60.109 55.000 0.00 0.00 0.00 3.41
196 197 0.108520 TGAACCGTCGCCTTATCCAC 60.109 55.000 0.00 0.00 0.00 4.02
197 198 0.808847 GAACCGTCGCCTTATCCACC 60.809 60.000 0.00 0.00 0.00 4.61
198 199 1.262640 AACCGTCGCCTTATCCACCT 61.263 55.000 0.00 0.00 0.00 4.00
199 200 1.067582 CCGTCGCCTTATCCACCTC 59.932 63.158 0.00 0.00 0.00 3.85
200 201 1.067582 CGTCGCCTTATCCACCTCC 59.932 63.158 0.00 0.00 0.00 4.30
201 202 1.672854 CGTCGCCTTATCCACCTCCA 61.673 60.000 0.00 0.00 0.00 3.86
202 203 0.179081 GTCGCCTTATCCACCTCCAC 60.179 60.000 0.00 0.00 0.00 4.02
203 204 1.227263 CGCCTTATCCACCTCCACG 60.227 63.158 0.00 0.00 0.00 4.94
204 205 1.672854 CGCCTTATCCACCTCCACGA 61.673 60.000 0.00 0.00 0.00 4.35
205 206 0.179081 GCCTTATCCACCTCCACGAC 60.179 60.000 0.00 0.00 0.00 4.34
206 207 1.191535 CCTTATCCACCTCCACGACA 58.808 55.000 0.00 0.00 0.00 4.35
207 208 1.762957 CCTTATCCACCTCCACGACAT 59.237 52.381 0.00 0.00 0.00 3.06
208 209 2.483714 CCTTATCCACCTCCACGACATG 60.484 54.545 0.00 0.00 0.00 3.21
209 210 2.153034 TATCCACCTCCACGACATGA 57.847 50.000 0.00 0.00 0.00 3.07
210 211 0.826715 ATCCACCTCCACGACATGAG 59.173 55.000 0.00 0.00 0.00 2.90
211 212 0.251608 TCCACCTCCACGACATGAGA 60.252 55.000 0.00 0.00 0.00 3.27
212 213 0.108615 CCACCTCCACGACATGAGAC 60.109 60.000 0.00 0.00 0.00 3.36
213 214 0.603065 CACCTCCACGACATGAGACA 59.397 55.000 0.00 0.00 0.00 3.41
214 215 0.891373 ACCTCCACGACATGAGACAG 59.109 55.000 0.00 0.00 0.00 3.51
215 216 1.177401 CCTCCACGACATGAGACAGA 58.823 55.000 0.00 0.00 0.00 3.41
216 217 1.133982 CCTCCACGACATGAGACAGAG 59.866 57.143 0.00 0.00 0.00 3.35
217 218 0.528017 TCCACGACATGAGACAGAGC 59.472 55.000 0.00 0.00 0.00 4.09
218 219 0.799917 CCACGACATGAGACAGAGCG 60.800 60.000 0.00 0.00 0.00 5.03
219 220 0.169009 CACGACATGAGACAGAGCGA 59.831 55.000 0.00 0.00 0.00 4.93
220 221 0.169230 ACGACATGAGACAGAGCGAC 59.831 55.000 0.00 0.00 0.00 5.19
221 222 0.449786 CGACATGAGACAGAGCGACT 59.550 55.000 0.00 0.00 0.00 4.18
222 223 1.530852 CGACATGAGACAGAGCGACTC 60.531 57.143 0.00 0.00 37.00 3.36
223 224 1.742831 GACATGAGACAGAGCGACTCT 59.257 52.381 0.00 3.88 42.11 3.24
224 225 2.163412 GACATGAGACAGAGCGACTCTT 59.837 50.000 0.00 0.64 38.99 2.85
225 226 2.163412 ACATGAGACAGAGCGACTCTTC 59.837 50.000 0.00 8.12 38.99 2.87
238 239 4.346049 TCTTCGCAGAGGAGGAGG 57.654 61.111 0.00 0.00 37.85 4.30
239 240 1.691823 TCTTCGCAGAGGAGGAGGA 59.308 57.895 0.00 0.00 37.85 3.71
240 241 0.395036 TCTTCGCAGAGGAGGAGGAG 60.395 60.000 0.00 0.00 37.85 3.69
241 242 1.380515 TTCGCAGAGGAGGAGGAGG 60.381 63.158 0.00 0.00 38.43 4.30
242 243 1.864263 TTCGCAGAGGAGGAGGAGGA 61.864 60.000 0.00 0.00 38.43 3.71
243 244 1.827789 CGCAGAGGAGGAGGAGGAG 60.828 68.421 0.00 0.00 0.00 3.69
244 245 1.457455 GCAGAGGAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
245 246 1.943730 GCAGAGGAGGAGGAGGAGGA 61.944 65.000 0.00 0.00 0.00 3.71
246 247 0.185901 CAGAGGAGGAGGAGGAGGAG 59.814 65.000 0.00 0.00 0.00 3.69
247 248 0.047176 AGAGGAGGAGGAGGAGGAGA 59.953 60.000 0.00 0.00 0.00 3.71
248 249 1.158007 GAGGAGGAGGAGGAGGAGAT 58.842 60.000 0.00 0.00 0.00 2.75
249 250 0.859760 AGGAGGAGGAGGAGGAGATG 59.140 60.000 0.00 0.00 0.00 2.90
250 251 0.831711 GGAGGAGGAGGAGGAGATGC 60.832 65.000 0.00 0.00 0.00 3.91
283 284 0.321671 CACCTCCAATGACCACGAGT 59.678 55.000 0.00 0.00 0.00 4.18
316 318 3.274288 GACAAGGGGTCATCAACATCTC 58.726 50.000 0.00 0.00 46.19 2.75
329 331 0.820074 ACATCTCCTCGGGCGAGTAG 60.820 60.000 0.00 0.00 40.44 2.57
348 350 7.172875 GCGAGTAGGAAGTGTAGTTATCTATCA 59.827 40.741 0.00 0.00 0.00 2.15
372 374 8.375506 TCAAGTATAGTTCTGGTTTCAATCAGT 58.624 33.333 0.00 0.00 38.31 3.41
375 377 8.157476 AGTATAGTTCTGGTTTCAATCAGTGTT 58.843 33.333 0.00 0.00 38.31 3.32
408 417 3.966979 TGTTGCATGTAGTTGGATGGAT 58.033 40.909 0.00 0.00 0.00 3.41
416 425 3.591527 TGTAGTTGGATGGATTTGAGGGT 59.408 43.478 0.00 0.00 0.00 4.34
418 427 3.701664 AGTTGGATGGATTTGAGGGTTC 58.298 45.455 0.00 0.00 0.00 3.62
443 452 1.303317 GAAGGGTGTGGTTGCGGAT 60.303 57.895 0.00 0.00 0.00 4.18
462 471 0.895100 TGCAGACAAATGAGGGGCAC 60.895 55.000 0.00 0.00 0.00 5.01
498 507 1.200483 GACACGTCTGCGGACATATG 58.800 55.000 24.91 20.05 42.21 1.78
499 508 0.815095 ACACGTCTGCGGACATATGA 59.185 50.000 24.91 0.00 42.21 2.15
501 510 1.854743 CACGTCTGCGGACATATGAAG 59.145 52.381 24.91 9.45 42.21 3.02
502 511 1.202417 ACGTCTGCGGACATATGAAGG 60.202 52.381 24.91 8.74 42.21 3.46
517 526 1.271163 TGAAGGGTCGGATTTGTCCAC 60.271 52.381 0.00 0.00 0.00 4.02
519 528 0.613777 AGGGTCGGATTTGTCCACTC 59.386 55.000 0.00 0.00 0.00 3.51
533 543 0.462047 CCACTCCGGTTGTAGATGCC 60.462 60.000 0.00 0.00 0.00 4.40
545 555 2.308570 TGTAGATGCCCTGAACACCATT 59.691 45.455 0.00 0.00 0.00 3.16
563 573 7.988937 ACACCATTACATCCCTTCATATATGT 58.011 34.615 12.42 0.00 36.56 2.29
575 585 8.321353 TCCCTTCATATATGTTCCACATCATAC 58.679 37.037 12.42 0.00 39.88 2.39
579 589 8.434589 TCATATATGTTCCACATCATACAGGA 57.565 34.615 12.42 0.00 39.88 3.86
598 608 6.842163 ACAGGAAAATATTAGAAACTGCACG 58.158 36.000 0.00 0.00 0.00 5.34
634 644 3.762293 TGCTGTGATTGTGCACCC 58.238 55.556 15.69 4.16 37.99 4.61
635 645 1.152798 TGCTGTGATTGTGCACCCA 60.153 52.632 15.69 6.99 37.99 4.51
636 646 1.286880 GCTGTGATTGTGCACCCAC 59.713 57.895 15.69 18.67 42.40 4.61
643 653 3.648694 TGTGCACCCACACCTACA 58.351 55.556 15.69 0.00 46.51 2.74
644 654 1.147376 TGTGCACCCACACCTACAC 59.853 57.895 15.69 0.00 46.51 2.90
645 655 1.959226 GTGCACCCACACCTACACG 60.959 63.158 5.22 0.00 41.67 4.49
646 656 2.358247 GCACCCACACCTACACGG 60.358 66.667 0.00 0.00 39.35 4.94
647 657 2.358247 CACCCACACCTACACGGC 60.358 66.667 0.00 0.00 35.61 5.68
648 658 2.845317 ACCCACACCTACACGGCA 60.845 61.111 0.00 0.00 35.61 5.69
649 659 2.428187 CCCACACCTACACGGCAA 59.572 61.111 0.00 0.00 35.61 4.52
650 660 1.964373 CCCACACCTACACGGCAAC 60.964 63.158 0.00 0.00 35.61 4.17
711 721 1.396996 GTTTGGTCGCGCTATGAACAT 59.603 47.619 5.56 0.00 32.12 2.71
970 988 4.570663 CCGTCGTCAGATCGGGCC 62.571 72.222 0.00 0.00 37.39 5.80
1485 1505 3.808174 GTGGAATTAGGGCACGAACTATC 59.192 47.826 0.00 0.00 0.00 2.08
1518 1538 9.859427 TTGATTTGATGATTCTATTGGAAACAC 57.141 29.630 0.00 0.00 42.67 3.32
1528 1548 5.433526 TCTATTGGAAACACGGGGATTTAG 58.566 41.667 0.00 0.00 42.67 1.85
1529 1549 1.828979 TGGAAACACGGGGATTTAGC 58.171 50.000 0.00 0.00 33.40 3.09
1535 1555 1.837439 ACACGGGGATTTAGCTGATGA 59.163 47.619 0.00 0.00 0.00 2.92
1564 1584 2.307934 TGGTTTTCACTTTTGCTGCC 57.692 45.000 0.00 0.00 0.00 4.85
1683 1713 5.440610 ACTCCCGATAGAATTGCTTGAAAT 58.559 37.500 0.00 0.00 39.76 2.17
1712 1742 3.916349 TCCCTATCGGATTTTGATGGGAT 59.084 43.478 6.91 0.00 44.71 3.85
1867 1897 7.631717 ACTTGCCTGAAAATATAGGACTTTC 57.368 36.000 0.00 0.00 36.11 2.62
2045 2076 8.680903 ACTCTAAATGCTGTTCCATCAATAAAG 58.319 33.333 0.00 0.00 0.00 1.85
2050 2081 3.731867 GCTGTTCCATCAATAAAGTGCCG 60.732 47.826 0.00 0.00 0.00 5.69
2087 2118 5.940470 TCCATCAACTTCTAAAGCTTCTTCC 59.060 40.000 0.00 0.00 0.00 3.46
2152 2183 9.845740 TGAATGCTAATAGGTATATTGTGTTGT 57.154 29.630 0.00 0.00 33.58 3.32
2168 2199 4.877251 TGTGTTGTAGTTTAGGGTGTGTTC 59.123 41.667 0.00 0.00 0.00 3.18
2197 2228 4.647399 CCTAGGTTCTCTTGCTTAGCTAGT 59.353 45.833 14.55 0.00 37.13 2.57
2273 2304 1.244816 GGTTAGTGACTGGCAAACCC 58.755 55.000 5.90 0.00 33.22 4.11
2330 2361 2.086869 CTCTGTTACCTTGGCCATGTG 58.913 52.381 6.09 5.91 0.00 3.21
2331 2362 1.702401 TCTGTTACCTTGGCCATGTGA 59.298 47.619 6.09 0.47 0.00 3.58
2347 2381 1.339438 TGTGAGAGAGCCAATTCAGCC 60.339 52.381 0.00 0.00 0.00 4.85
2398 2432 6.195700 TCAGTTACTAGGAATCTAGCCAAGT 58.804 40.000 0.00 0.00 45.20 3.16
2487 2521 4.319177 CTCAGAACCAAACTCACCCTTAG 58.681 47.826 0.00 0.00 0.00 2.18
2494 2528 4.470304 ACCAAACTCACCCTTAGTAGATCC 59.530 45.833 0.00 0.00 0.00 3.36
2519 2553 5.697633 GGTGATTGAAAATGCACAAATCACT 59.302 36.000 25.12 10.48 36.32 3.41
2523 2557 7.494952 TGATTGAAAATGCACAAATCACTGAAA 59.505 29.630 0.00 0.00 0.00 2.69
2535 2569 6.491403 ACAAATCACTGAAAGAACAGGCTATT 59.509 34.615 0.00 0.00 41.59 1.73
2592 2626 4.260170 GTTGATTGTGAGATCAGAAGGCT 58.740 43.478 0.00 0.00 37.35 4.58
3172 3215 6.714810 TGCCACACTGTTCTAATATTTGTTCT 59.285 34.615 0.00 0.00 0.00 3.01
3200 3243 5.185454 AGATCAGTGCCGAATTTTCATGTA 58.815 37.500 0.00 0.00 0.00 2.29
3201 3244 5.647658 AGATCAGTGCCGAATTTTCATGTAA 59.352 36.000 0.00 0.00 0.00 2.41
3217 3260 7.608308 TTCATGTAAAACTGCTTTTTGCTTT 57.392 28.000 11.40 0.88 39.73 3.51
3376 3419 7.148440 GCTTGCAAAATATTTGCTGAATACCAA 60.148 33.333 23.49 9.85 45.13 3.67
3454 3497 1.890979 GGCTGGATCTGTGGATGCG 60.891 63.158 0.00 0.00 42.17 4.73
3535 3578 9.606631 AATAACAGGTTATCAGAAGATCTTGTC 57.393 33.333 14.00 0.00 34.90 3.18
3544 3587 6.918067 TCAGAAGATCTTGTCCTTGTAGAA 57.082 37.500 14.00 0.00 0.00 2.10
3592 3635 1.001048 GCATGTGAAACTCTTGCTGCA 60.001 47.619 0.00 0.00 38.04 4.41
3867 3910 6.532988 ACTCTTGAGGTACTATCCTGTTTC 57.467 41.667 2.55 0.00 41.55 2.78
3868 3911 5.422650 ACTCTTGAGGTACTATCCTGTTTCC 59.577 44.000 2.55 0.00 41.55 3.13
3869 3912 4.715297 TCTTGAGGTACTATCCTGTTTCCC 59.285 45.833 0.00 0.00 41.55 3.97
3898 3942 7.181361 TCCATCTGTTCTTTCCAATTCCAATA 58.819 34.615 0.00 0.00 0.00 1.90
4383 4430 2.343163 GATCAGAGCTGTCGACCCGG 62.343 65.000 14.12 0.00 0.00 5.73
4402 4449 1.212935 GGGGAACACATGACCAGCTAT 59.787 52.381 0.00 0.00 0.00 2.97
4450 4497 4.137543 GCCACTTGAAGGGTTATATCCAG 58.862 47.826 0.00 0.00 0.00 3.86
4659 4706 4.083271 GGCCTCATGTTCTGTTACTGAAAC 60.083 45.833 6.26 2.87 38.67 2.78
4690 4737 9.638239 CTATGATTATGTCTAGCTCTTCTTTCC 57.362 37.037 0.00 0.00 0.00 3.13
4699 4746 3.849527 AGCTCTTCTTTCCCCAAACAAT 58.150 40.909 0.00 0.00 0.00 2.71
4740 4787 2.682856 ACTAATGTATTGCACTTGGCCG 59.317 45.455 0.00 0.00 43.89 6.13
4978 5025 3.406764 GGCATATCGGATTCTCTTTGCT 58.593 45.455 0.00 0.00 0.00 3.91
5039 5086 8.450964 GTTTCATATTAAGTTCAGCTAAGCACA 58.549 33.333 0.00 0.00 0.00 4.57
5070 5117 7.500892 TGTCATGAAACAACCTGTTAACAGTAT 59.499 33.333 29.05 17.03 40.14 2.12
5093 5140 2.906354 AGTGTTTATAGCTTGAGGCCG 58.094 47.619 0.00 0.00 43.05 6.13
5437 5484 0.464036 TATGCGCCGAGTGGAAAGAT 59.536 50.000 4.18 0.00 37.49 2.40
5517 5564 4.065088 TCAGAACTGGAGTGCATTTACAC 58.935 43.478 0.00 0.00 41.02 2.90
5777 5989 5.782331 AGCTTTATGGCTAGGTCATATCTCA 59.218 40.000 0.00 0.00 41.16 3.27
6009 6236 3.973973 AGAATAGCCTATGCAGGTTACCA 59.026 43.478 3.51 0.00 44.68 3.25
6127 6354 2.818130 TGCTGATGTTTTCCCTTTGC 57.182 45.000 0.00 0.00 0.00 3.68
6295 6522 6.096423 TGCTCTTCAGTATAATTCTGGTACGT 59.904 38.462 0.00 0.00 34.15 3.57
6312 6539 1.485066 ACGTCTGTGTTGGGAGTTCTT 59.515 47.619 0.00 0.00 0.00 2.52
6325 6556 7.777910 TGTTGGGAGTTCTTTATTTTTCTCTCA 59.222 33.333 0.00 0.00 31.78 3.27
6373 6605 4.469657 TGTTAAGGCAGAATGTGTCCTTT 58.530 39.130 10.27 0.00 40.79 3.11
6374 6606 4.892934 TGTTAAGGCAGAATGTGTCCTTTT 59.107 37.500 10.27 0.00 40.79 2.27
6413 6645 0.627451 TGGGATTCTCCATGCTTGCT 59.373 50.000 0.00 0.00 38.64 3.91
6626 6858 2.455557 CCATGTGCCCTTTTATCCACA 58.544 47.619 0.00 0.00 41.77 4.17
6628 6860 3.451902 CCATGTGCCCTTTTATCCACATT 59.548 43.478 2.66 0.00 44.05 2.71
6681 6913 3.348119 TGCTAGAGAGTACTCAGGTGTG 58.652 50.000 24.44 10.20 44.79 3.82
7009 7403 2.348218 CGTTGTTCGGCTACAGTTTGTC 60.348 50.000 0.00 0.00 35.71 3.18
7019 7420 1.896220 ACAGTTTGTCGGCATGTGAT 58.104 45.000 0.00 0.00 0.00 3.06
7347 7749 5.449553 ACCTTGAATTGATGTATTCCCTCC 58.550 41.667 0.00 0.00 34.34 4.30
7359 7761 8.656806 TGATGTATTCCCTCCGTTTCTAAATAT 58.343 33.333 0.00 0.00 0.00 1.28
7442 7844 4.333926 GTGTAGATTCACTGATTTGGCTCC 59.666 45.833 0.00 0.00 35.68 4.70
7446 7848 2.380084 TCACTGATTTGGCTCCGTAC 57.620 50.000 0.00 0.00 0.00 3.67
7452 7854 2.159338 TGATTTGGCTCCGTACGTAGTC 60.159 50.000 15.21 10.33 43.93 2.59
7453 7855 0.527565 TTTGGCTCCGTACGTAGTCC 59.472 55.000 15.21 13.41 43.93 3.85
7504 7909 0.831307 GGAACGGAGGGAGTAGCATT 59.169 55.000 0.00 0.00 0.00 3.56
7831 8236 2.205074 CGCAACCTTCTGATTCGCTAT 58.795 47.619 0.00 0.00 0.00 2.97
7858 8263 3.210012 TTCCAAGGGAGCCACAGCC 62.210 63.158 0.00 0.00 41.25 4.85
7893 8299 6.500684 TTTGATTAGATGAGAAGTGCCAAC 57.499 37.500 0.00 0.00 0.00 3.77
8168 8574 7.035612 CGCTTTATTTTTATTCTTTGGAGGCT 58.964 34.615 0.00 0.00 0.00 4.58
8352 8760 4.663636 ACGTGCTTTGCTATTGTTCTAC 57.336 40.909 0.00 0.00 0.00 2.59
8370 8778 1.180029 ACCTGCATGCTGATTTGGAC 58.820 50.000 24.53 0.00 0.00 4.02
8371 8779 0.099968 CCTGCATGCTGATTTGGACG 59.900 55.000 24.53 2.77 0.00 4.79
8386 8794 0.165944 GGACGTTCGCACCTCATTTG 59.834 55.000 0.00 0.00 0.00 2.32
8400 8808 1.142667 TCATTTGTGCACTCCTGTGGA 59.857 47.619 19.41 3.87 43.97 4.02
8407 8815 3.181445 TGTGCACTCCTGTGGATAACTTT 60.181 43.478 19.41 0.00 45.82 2.66
8410 8818 4.530553 TGCACTCCTGTGGATAACTTTAGA 59.469 41.667 0.00 0.00 43.97 2.10
8429 8837 6.585695 TTAGAGAATAAGTGTGTCCGACTT 57.414 37.500 0.00 0.00 37.43 3.01
8438 8846 5.407407 AGTGTGTCCGACTTATGAAGATT 57.593 39.130 0.00 0.00 0.00 2.40
8442 8850 7.876068 AGTGTGTCCGACTTATGAAGATTAAAA 59.124 33.333 0.00 0.00 0.00 1.52
8529 8937 8.005192 TGAGGATCATATCATCATACTAGCAC 57.995 38.462 0.43 0.00 44.18 4.40
8554 8962 2.929960 TCTTTCTCGCTTGTACTCACG 58.070 47.619 0.00 0.00 0.00 4.35
8560 8968 1.736126 TCGCTTGTACTCACGGTCTAG 59.264 52.381 0.00 0.00 0.00 2.43
8566 8974 5.008811 GCTTGTACTCACGGTCTAGTATGAT 59.991 44.000 0.00 0.00 31.25 2.45
8567 8975 6.615264 TTGTACTCACGGTCTAGTATGATC 57.385 41.667 0.00 0.00 31.25 2.92
8590 8998 0.517316 CCACGGTCTAGCTTGCAAAC 59.483 55.000 0.00 0.00 0.00 2.93
8747 9155 0.883833 GCAACAACATGTGGGAGGAG 59.116 55.000 4.95 0.00 0.00 3.69
8757 9165 7.893302 ACAACATGTGGGAGGAGATTAATAAAA 59.107 33.333 4.95 0.00 0.00 1.52
8758 9166 8.408601 CAACATGTGGGAGGAGATTAATAAAAG 58.591 37.037 0.00 0.00 0.00 2.27
8759 9167 7.872138 ACATGTGGGAGGAGATTAATAAAAGA 58.128 34.615 0.00 0.00 0.00 2.52
8760 9168 8.336235 ACATGTGGGAGGAGATTAATAAAAGAA 58.664 33.333 0.00 0.00 0.00 2.52
8761 9169 8.624776 CATGTGGGAGGAGATTAATAAAAGAAC 58.375 37.037 0.00 0.00 0.00 3.01
8785 9193 1.077858 TGCATGCGGGTCAATAGCA 60.078 52.632 14.09 0.00 45.46 3.49
8788 9196 4.876701 TGCGGGTCAATAGCATCC 57.123 55.556 0.00 0.00 35.81 3.51
8793 9201 1.166531 GGGTCAATAGCATCCACCGC 61.167 60.000 0.00 0.00 0.00 5.68
8817 9225 4.545823 TGAAAACCTCAACGTTAGCAAG 57.454 40.909 0.00 0.00 0.00 4.01
8819 9227 4.636648 TGAAAACCTCAACGTTAGCAAGAA 59.363 37.500 0.00 0.00 0.00 2.52
8822 9230 2.104281 ACCTCAACGTTAGCAAGAACCT 59.896 45.455 0.00 0.00 0.00 3.50
8831 9239 1.952263 GCAAGAACCTGCTTCGCTT 59.048 52.632 0.00 0.00 39.34 4.68
8842 9250 2.785105 CTTCGCTTTCGCCCGTACG 61.785 63.158 8.69 8.69 35.26 3.67
8843 9251 4.781959 TCGCTTTCGCCCGTACGG 62.782 66.667 27.68 27.68 35.26 4.02
8869 9277 3.268072 AGCTCCTGCCCTTTCTTATCTTT 59.732 43.478 0.00 0.00 40.80 2.52
8870 9278 4.019858 GCTCCTGCCCTTTCTTATCTTTT 58.980 43.478 0.00 0.00 0.00 2.27
8871 9279 4.464244 GCTCCTGCCCTTTCTTATCTTTTT 59.536 41.667 0.00 0.00 0.00 1.94
8872 9280 5.652452 GCTCCTGCCCTTTCTTATCTTTTTA 59.348 40.000 0.00 0.00 0.00 1.52
8873 9281 6.322456 GCTCCTGCCCTTTCTTATCTTTTTAT 59.678 38.462 0.00 0.00 0.00 1.40
8875 9283 8.980481 TCCTGCCCTTTCTTATCTTTTTATAG 57.020 34.615 0.00 0.00 0.00 1.31
8876 9284 7.998964 TCCTGCCCTTTCTTATCTTTTTATAGG 59.001 37.037 0.00 0.00 0.00 2.57
8877 9285 7.780271 CCTGCCCTTTCTTATCTTTTTATAGGT 59.220 37.037 0.00 0.00 0.00 3.08
8878 9286 9.847224 CTGCCCTTTCTTATCTTTTTATAGGTA 57.153 33.333 0.00 0.00 0.00 3.08
8897 9305 5.332743 AGGTAAATGAAAAATCTCTGGCCA 58.667 37.500 4.71 4.71 0.00 5.36
8898 9306 5.420104 AGGTAAATGAAAAATCTCTGGCCAG 59.580 40.000 27.87 27.87 0.00 4.85
8899 9307 5.418840 GGTAAATGAAAAATCTCTGGCCAGA 59.581 40.000 33.04 33.04 35.85 3.86
8900 9308 6.071391 GGTAAATGAAAAATCTCTGGCCAGAA 60.071 38.462 34.30 24.58 36.94 3.02
8901 9309 5.397142 AATGAAAAATCTCTGGCCAGAAC 57.603 39.130 34.30 18.91 36.94 3.01
8902 9310 2.813754 TGAAAAATCTCTGGCCAGAACG 59.186 45.455 34.30 24.13 36.94 3.95
8903 9311 1.826385 AAAATCTCTGGCCAGAACGG 58.174 50.000 34.30 23.42 36.94 4.44
8904 9312 0.693049 AAATCTCTGGCCAGAACGGT 59.307 50.000 34.30 18.92 36.94 4.83
8905 9313 0.250513 AATCTCTGGCCAGAACGGTC 59.749 55.000 34.30 0.00 41.21 4.79
8907 9315 1.374758 CTCTGGCCAGAACGGTCAC 60.375 63.158 34.30 0.00 43.99 3.67
8908 9316 2.358737 CTGGCCAGAACGGTCACC 60.359 66.667 29.88 1.08 43.99 4.02
8909 9317 4.308458 TGGCCAGAACGGTCACCG 62.308 66.667 16.81 16.81 43.99 4.94
8918 9326 3.450115 CGGTCACCGTCCCTCCTC 61.450 72.222 8.54 0.00 42.73 3.71
8919 9327 2.037527 GGTCACCGTCCCTCCTCT 59.962 66.667 0.00 0.00 0.00 3.69
8920 9328 2.053277 GGTCACCGTCCCTCCTCTC 61.053 68.421 0.00 0.00 0.00 3.20
8921 9329 2.053277 GTCACCGTCCCTCCTCTCC 61.053 68.421 0.00 0.00 0.00 3.71
8922 9330 2.239439 TCACCGTCCCTCCTCTCCT 61.239 63.158 0.00 0.00 0.00 3.69
8923 9331 2.055042 CACCGTCCCTCCTCTCCTG 61.055 68.421 0.00 0.00 0.00 3.86
8924 9332 2.443016 CCGTCCCTCCTCTCCTGG 60.443 72.222 0.00 0.00 0.00 4.45
8925 9333 3.151022 CGTCCCTCCTCTCCTGGC 61.151 72.222 0.00 0.00 0.00 4.85
8926 9334 3.151022 GTCCCTCCTCTCCTGGCG 61.151 72.222 0.00 0.00 0.00 5.69
8927 9335 3.673597 TCCCTCCTCTCCTGGCGT 61.674 66.667 0.00 0.00 0.00 5.68
8928 9336 3.465403 CCCTCCTCTCCTGGCGTG 61.465 72.222 0.00 0.00 0.00 5.34
8929 9337 4.154347 CCTCCTCTCCTGGCGTGC 62.154 72.222 0.00 0.00 0.00 5.34
8930 9338 4.504916 CTCCTCTCCTGGCGTGCG 62.505 72.222 0.00 0.00 0.00 5.34
8980 9388 1.971167 GGTCTGGGCACAATTCGCA 60.971 57.895 0.00 0.00 0.00 5.10
8982 9390 1.228094 TCTGGGCACAATTCGCACA 60.228 52.632 0.00 1.56 41.48 4.57
8998 9406 3.858812 TCGCACACATAAATACACGGTAC 59.141 43.478 0.00 0.00 0.00 3.34
9030 9438 5.413309 AAAAACAATGAACCAACCTGTGA 57.587 34.783 0.00 0.00 0.00 3.58
9031 9439 5.612725 AAAACAATGAACCAACCTGTGAT 57.387 34.783 0.00 0.00 0.00 3.06
9032 9440 5.612725 AAACAATGAACCAACCTGTGATT 57.387 34.783 0.00 0.00 0.00 2.57
9033 9441 4.589216 ACAATGAACCAACCTGTGATTG 57.411 40.909 0.00 0.00 0.00 2.67
9042 9450 4.970662 CAACCTGTGATTGGATGGTTAG 57.029 45.455 0.00 0.00 38.76 2.34
9043 9451 4.588899 CAACCTGTGATTGGATGGTTAGA 58.411 43.478 0.00 0.00 38.76 2.10
9044 9452 4.494091 ACCTGTGATTGGATGGTTAGAG 57.506 45.455 0.00 0.00 0.00 2.43
9045 9453 3.209410 CCTGTGATTGGATGGTTAGAGC 58.791 50.000 0.00 0.00 0.00 4.09
9046 9454 2.868583 CTGTGATTGGATGGTTAGAGCG 59.131 50.000 0.00 0.00 0.00 5.03
9047 9455 1.599542 GTGATTGGATGGTTAGAGCGC 59.400 52.381 0.00 0.00 0.00 5.92
9048 9456 1.486310 TGATTGGATGGTTAGAGCGCT 59.514 47.619 11.27 11.27 0.00 5.92
9049 9457 2.092968 TGATTGGATGGTTAGAGCGCTT 60.093 45.455 13.26 4.13 0.00 4.68
9050 9458 2.024176 TTGGATGGTTAGAGCGCTTC 57.976 50.000 13.26 2.22 0.00 3.86
9051 9459 1.195115 TGGATGGTTAGAGCGCTTCT 58.805 50.000 13.26 12.97 40.06 2.85
9052 9460 1.134699 TGGATGGTTAGAGCGCTTCTG 60.135 52.381 13.26 0.00 36.61 3.02
9053 9461 1.134670 GGATGGTTAGAGCGCTTCTGT 60.135 52.381 13.26 0.00 36.61 3.41
9054 9462 2.197577 GATGGTTAGAGCGCTTCTGTC 58.802 52.381 13.26 0.00 36.61 3.51
9055 9463 1.257743 TGGTTAGAGCGCTTCTGTCT 58.742 50.000 13.26 6.32 36.61 3.41
9056 9464 1.067565 TGGTTAGAGCGCTTCTGTCTG 60.068 52.381 13.26 0.00 36.61 3.51
9057 9465 1.067495 GGTTAGAGCGCTTCTGTCTGT 60.067 52.381 13.26 0.00 36.61 3.41
9058 9466 2.163815 GGTTAGAGCGCTTCTGTCTGTA 59.836 50.000 13.26 0.00 36.61 2.74
9059 9467 3.172824 GTTAGAGCGCTTCTGTCTGTAC 58.827 50.000 13.26 3.32 36.61 2.90
9060 9468 1.540267 AGAGCGCTTCTGTCTGTACT 58.460 50.000 13.26 0.00 33.93 2.73
9061 9469 1.201181 AGAGCGCTTCTGTCTGTACTG 59.799 52.381 13.26 0.00 33.93 2.74
9062 9470 1.200252 GAGCGCTTCTGTCTGTACTGA 59.800 52.381 13.26 0.00 0.00 3.41
9063 9471 1.821753 AGCGCTTCTGTCTGTACTGAT 59.178 47.619 2.64 0.00 34.05 2.90
9064 9472 1.923204 GCGCTTCTGTCTGTACTGATG 59.077 52.381 0.00 3.09 34.05 3.07
9065 9473 2.672478 GCGCTTCTGTCTGTACTGATGT 60.672 50.000 0.00 0.00 34.05 3.06
9066 9474 3.579709 CGCTTCTGTCTGTACTGATGTT 58.420 45.455 5.69 0.00 34.05 2.71
9067 9475 4.733850 CGCTTCTGTCTGTACTGATGTTA 58.266 43.478 5.69 0.00 34.05 2.41
9068 9476 5.161358 CGCTTCTGTCTGTACTGATGTTAA 58.839 41.667 5.69 0.00 34.05 2.01
9069 9477 5.633601 CGCTTCTGTCTGTACTGATGTTAAA 59.366 40.000 5.69 0.00 34.05 1.52
9070 9478 6.145534 CGCTTCTGTCTGTACTGATGTTAAAA 59.854 38.462 5.69 0.00 34.05 1.52
9071 9479 7.307160 CGCTTCTGTCTGTACTGATGTTAAAAA 60.307 37.037 5.69 0.00 34.05 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.346828 ACTAGTAGGAAAACCCTTATAGGTGTA 58.653 37.037 1.45 0.00 44.85 2.90
1 2 7.125356 CACTAGTAGGAAAACCCTTATAGGTGT 59.875 40.741 1.45 0.00 44.85 4.16
2 3 7.343833 TCACTAGTAGGAAAACCCTTATAGGTG 59.656 40.741 1.45 0.00 44.85 4.00
3 4 7.425003 TCACTAGTAGGAAAACCCTTATAGGT 58.575 38.462 1.45 0.00 44.85 3.08
4 5 7.783596 TCTCACTAGTAGGAAAACCCTTATAGG 59.216 40.741 1.45 0.00 44.85 2.57
5 6 8.763984 TCTCACTAGTAGGAAAACCCTTATAG 57.236 38.462 1.45 0.00 44.85 1.31
6 7 7.783596 CCTCTCACTAGTAGGAAAACCCTTATA 59.216 40.741 4.37 0.00 44.85 0.98
7 8 6.612049 CCTCTCACTAGTAGGAAAACCCTTAT 59.388 42.308 4.37 0.00 44.85 1.73
8 9 5.956563 CCTCTCACTAGTAGGAAAACCCTTA 59.043 44.000 4.37 0.00 44.85 2.69
9 10 4.778427 CCTCTCACTAGTAGGAAAACCCTT 59.222 45.833 4.37 0.00 44.85 3.95
11 12 3.118702 GCCTCTCACTAGTAGGAAAACCC 60.119 52.174 13.46 0.00 31.64 4.11
12 13 3.118702 GGCCTCTCACTAGTAGGAAAACC 60.119 52.174 13.46 2.39 31.64 3.27
13 14 3.514309 TGGCCTCTCACTAGTAGGAAAAC 59.486 47.826 13.46 2.24 31.64 2.43
14 15 3.786553 TGGCCTCTCACTAGTAGGAAAA 58.213 45.455 13.46 0.00 31.64 2.29
15 16 3.468071 TGGCCTCTCACTAGTAGGAAA 57.532 47.619 13.46 0.00 31.64 3.13
16 17 3.366396 CTTGGCCTCTCACTAGTAGGAA 58.634 50.000 13.46 0.44 31.64 3.36
17 18 2.358300 CCTTGGCCTCTCACTAGTAGGA 60.358 54.545 13.46 5.73 31.64 2.94
18 19 2.035632 CCTTGGCCTCTCACTAGTAGG 58.964 57.143 3.32 5.89 0.00 3.18
19 20 2.428890 CACCTTGGCCTCTCACTAGTAG 59.571 54.545 3.32 0.00 0.00 2.57
20 21 2.457598 CACCTTGGCCTCTCACTAGTA 58.542 52.381 3.32 0.00 0.00 1.82
21 22 1.270907 CACCTTGGCCTCTCACTAGT 58.729 55.000 3.32 0.00 0.00 2.57
22 23 0.539051 CCACCTTGGCCTCTCACTAG 59.461 60.000 3.32 0.00 0.00 2.57
23 24 0.116342 TCCACCTTGGCCTCTCACTA 59.884 55.000 3.32 0.00 37.47 2.74
24 25 1.152030 TCCACCTTGGCCTCTCACT 60.152 57.895 3.32 0.00 37.47 3.41
25 26 1.298014 CTCCACCTTGGCCTCTCAC 59.702 63.158 3.32 0.00 37.47 3.51
26 27 0.768221 AACTCCACCTTGGCCTCTCA 60.768 55.000 3.32 0.00 37.47 3.27
27 28 0.035915 GAACTCCACCTTGGCCTCTC 60.036 60.000 3.32 0.00 37.47 3.20
28 29 1.492993 GGAACTCCACCTTGGCCTCT 61.493 60.000 3.32 0.00 37.47 3.69
29 30 1.002011 GGAACTCCACCTTGGCCTC 60.002 63.158 3.32 0.00 37.47 4.70
30 31 1.774217 TGGAACTCCACCTTGGCCT 60.774 57.895 3.32 0.00 42.01 5.19
31 32 2.843545 TGGAACTCCACCTTGGCC 59.156 61.111 0.00 0.00 42.01 5.36
39 40 0.696143 TTGGGTGAGGTGGAACTCCA 60.696 55.000 0.00 0.00 45.79 3.86
40 41 0.036875 CTTGGGTGAGGTGGAACTCC 59.963 60.000 0.00 0.00 43.30 3.85
41 42 0.606673 GCTTGGGTGAGGTGGAACTC 60.607 60.000 0.00 0.00 36.74 3.01
42 43 1.456287 GCTTGGGTGAGGTGGAACT 59.544 57.895 0.00 0.00 36.74 3.01
43 44 1.603739 GGCTTGGGTGAGGTGGAAC 60.604 63.158 0.00 0.00 0.00 3.62
44 45 0.474854 TAGGCTTGGGTGAGGTGGAA 60.475 55.000 0.00 0.00 0.00 3.53
45 46 0.909610 CTAGGCTTGGGTGAGGTGGA 60.910 60.000 0.00 0.00 0.00 4.02
46 47 1.604378 CTAGGCTTGGGTGAGGTGG 59.396 63.158 0.00 0.00 0.00 4.61
47 48 0.909610 TCCTAGGCTTGGGTGAGGTG 60.910 60.000 15.05 0.00 0.00 4.00
48 49 0.618968 CTCCTAGGCTTGGGTGAGGT 60.619 60.000 15.05 0.00 0.00 3.85
49 50 1.341156 CCTCCTAGGCTTGGGTGAGG 61.341 65.000 15.05 10.54 34.02 3.86
50 51 0.618968 ACCTCCTAGGCTTGGGTGAG 60.619 60.000 15.05 5.28 39.63 3.51
51 52 1.474307 ACCTCCTAGGCTTGGGTGA 59.526 57.895 15.05 0.00 39.63 4.02
52 53 1.604378 CACCTCCTAGGCTTGGGTG 59.396 63.158 20.32 20.32 39.63 4.61
53 54 1.616628 CCACCTCCTAGGCTTGGGT 60.617 63.158 15.05 6.81 39.63 4.51
54 55 1.306997 TCCACCTCCTAGGCTTGGG 60.307 63.158 15.05 13.20 39.63 4.12
55 56 1.341156 CCTCCACCTCCTAGGCTTGG 61.341 65.000 8.84 8.84 39.63 3.61
56 57 2.216148 CCTCCACCTCCTAGGCTTG 58.784 63.158 2.96 0.28 39.63 4.01
57 58 4.818314 CCTCCACCTCCTAGGCTT 57.182 61.111 2.96 0.00 39.63 4.35
60 61 3.541713 GCGCCTCCACCTCCTAGG 61.542 72.222 0.82 0.82 42.49 3.02
61 62 2.759973 TGCGCCTCCACCTCCTAG 60.760 66.667 4.18 0.00 0.00 3.02
62 63 2.759973 CTGCGCCTCCACCTCCTA 60.760 66.667 4.18 0.00 0.00 2.94
78 79 4.749310 CTTGCTCCGCGTCCAGCT 62.749 66.667 19.06 0.00 45.59 4.24
86 87 1.874466 GAGAGTACGCTTGCTCCGC 60.874 63.158 4.66 0.00 35.12 5.54
87 88 0.101399 ATGAGAGTACGCTTGCTCCG 59.899 55.000 4.66 0.00 35.12 4.63
88 89 1.846541 GATGAGAGTACGCTTGCTCC 58.153 55.000 4.66 0.00 35.12 4.70
89 90 1.202200 ACGATGAGAGTACGCTTGCTC 60.202 52.381 0.00 0.00 34.78 4.26
90 91 0.811915 ACGATGAGAGTACGCTTGCT 59.188 50.000 0.00 0.00 0.00 3.91
91 92 1.321743 CAACGATGAGAGTACGCTTGC 59.678 52.381 0.00 0.00 0.00 4.01
92 93 2.863739 TCAACGATGAGAGTACGCTTG 58.136 47.619 0.00 0.00 0.00 4.01
93 94 3.489398 GGATCAACGATGAGAGTACGCTT 60.489 47.826 0.00 0.00 39.39 4.68
94 95 2.033550 GGATCAACGATGAGAGTACGCT 59.966 50.000 0.00 0.00 39.39 5.07
95 96 2.386249 GGATCAACGATGAGAGTACGC 58.614 52.381 0.82 0.00 39.39 4.42
96 97 2.602456 CGGGATCAACGATGAGAGTACG 60.602 54.545 0.82 0.00 39.39 3.67
97 98 2.287668 CCGGGATCAACGATGAGAGTAC 60.288 54.545 10.20 0.00 39.39 2.73
98 99 1.954382 CCGGGATCAACGATGAGAGTA 59.046 52.381 10.20 0.00 39.39 2.59
99 100 0.747255 CCGGGATCAACGATGAGAGT 59.253 55.000 10.20 0.00 39.39 3.24
100 101 0.598680 GCCGGGATCAACGATGAGAG 60.599 60.000 2.18 0.00 39.39 3.20
101 102 1.441729 GCCGGGATCAACGATGAGA 59.558 57.895 2.18 0.00 39.39 3.27
102 103 1.595382 GGCCGGGATCAACGATGAG 60.595 63.158 2.18 0.00 39.39 2.90
103 104 2.028125 GAGGCCGGGATCAACGATGA 62.028 60.000 2.18 0.00 40.57 2.92
104 105 1.595382 GAGGCCGGGATCAACGATG 60.595 63.158 2.18 0.00 0.00 3.84
105 106 1.410850 ATGAGGCCGGGATCAACGAT 61.411 55.000 2.18 0.00 0.00 3.73
106 107 2.063979 ATGAGGCCGGGATCAACGA 61.064 57.895 2.18 0.00 0.00 3.85
107 108 1.889105 CATGAGGCCGGGATCAACG 60.889 63.158 2.18 0.00 0.00 4.10
108 109 0.109342 ATCATGAGGCCGGGATCAAC 59.891 55.000 2.18 0.00 0.00 3.18
109 110 0.846015 AATCATGAGGCCGGGATCAA 59.154 50.000 2.18 0.00 0.00 2.57
110 111 1.728323 TAATCATGAGGCCGGGATCA 58.272 50.000 2.18 0.84 0.00 2.92
111 112 2.859165 TTAATCATGAGGCCGGGATC 57.141 50.000 2.18 0.00 0.00 3.36
112 113 3.593442 TTTTAATCATGAGGCCGGGAT 57.407 42.857 2.18 0.00 0.00 3.85
113 114 3.020984 GTTTTTAATCATGAGGCCGGGA 58.979 45.455 2.18 0.00 0.00 5.14
114 115 2.100749 GGTTTTTAATCATGAGGCCGGG 59.899 50.000 2.18 0.00 0.00 5.73
115 116 2.757868 TGGTTTTTAATCATGAGGCCGG 59.242 45.455 0.09 0.00 0.00 6.13
116 117 4.339247 AGATGGTTTTTAATCATGAGGCCG 59.661 41.667 0.09 0.00 0.00 6.13
117 118 5.127682 ACAGATGGTTTTTAATCATGAGGCC 59.872 40.000 0.09 0.00 0.00 5.19
118 119 6.212888 ACAGATGGTTTTTAATCATGAGGC 57.787 37.500 0.09 0.00 0.00 4.70
119 120 6.604795 AGGACAGATGGTTTTTAATCATGAGG 59.395 38.462 0.09 0.00 0.00 3.86
120 121 7.636150 AGGACAGATGGTTTTTAATCATGAG 57.364 36.000 0.09 0.00 0.00 2.90
121 122 7.669304 TCAAGGACAGATGGTTTTTAATCATGA 59.331 33.333 0.00 0.00 0.00 3.07
122 123 7.756722 GTCAAGGACAGATGGTTTTTAATCATG 59.243 37.037 0.00 0.00 32.09 3.07
123 124 7.671398 AGTCAAGGACAGATGGTTTTTAATCAT 59.329 33.333 0.00 0.00 34.60 2.45
124 125 7.004086 AGTCAAGGACAGATGGTTTTTAATCA 58.996 34.615 0.00 0.00 34.60 2.57
125 126 7.174946 TGAGTCAAGGACAGATGGTTTTTAATC 59.825 37.037 0.00 0.00 34.60 1.75
126 127 7.004086 TGAGTCAAGGACAGATGGTTTTTAAT 58.996 34.615 0.00 0.00 34.60 1.40
127 128 6.262273 GTGAGTCAAGGACAGATGGTTTTTAA 59.738 38.462 0.00 0.00 34.60 1.52
128 129 5.763204 GTGAGTCAAGGACAGATGGTTTTTA 59.237 40.000 0.00 0.00 34.60 1.52
129 130 4.580580 GTGAGTCAAGGACAGATGGTTTTT 59.419 41.667 0.00 0.00 34.60 1.94
130 131 4.137543 GTGAGTCAAGGACAGATGGTTTT 58.862 43.478 0.00 0.00 34.60 2.43
131 132 3.392616 AGTGAGTCAAGGACAGATGGTTT 59.607 43.478 0.00 0.00 34.60 3.27
132 133 2.975489 AGTGAGTCAAGGACAGATGGTT 59.025 45.455 0.00 0.00 34.60 3.67
133 134 2.564947 GAGTGAGTCAAGGACAGATGGT 59.435 50.000 0.00 0.00 34.60 3.55
134 135 2.830923 AGAGTGAGTCAAGGACAGATGG 59.169 50.000 0.00 0.00 34.60 3.51
135 136 5.850557 ATAGAGTGAGTCAAGGACAGATG 57.149 43.478 0.00 0.00 34.60 2.90
136 137 5.830991 GGTATAGAGTGAGTCAAGGACAGAT 59.169 44.000 0.00 0.00 34.60 2.90
137 138 5.194432 GGTATAGAGTGAGTCAAGGACAGA 58.806 45.833 0.00 0.00 34.60 3.41
138 139 4.035792 CGGTATAGAGTGAGTCAAGGACAG 59.964 50.000 0.00 0.00 34.60 3.51
139 140 3.945921 CGGTATAGAGTGAGTCAAGGACA 59.054 47.826 0.00 0.00 34.60 4.02
140 141 4.197750 TCGGTATAGAGTGAGTCAAGGAC 58.802 47.826 0.00 0.00 0.00 3.85
141 142 4.498894 TCGGTATAGAGTGAGTCAAGGA 57.501 45.455 0.00 0.00 0.00 3.36
142 143 5.299531 TCATTCGGTATAGAGTGAGTCAAGG 59.700 44.000 0.00 0.00 32.97 3.61
143 144 6.378710 TCATTCGGTATAGAGTGAGTCAAG 57.621 41.667 0.00 0.00 32.97 3.02
144 145 6.378710 CTCATTCGGTATAGAGTGAGTCAA 57.621 41.667 10.16 0.00 44.70 3.18
149 150 5.050126 ACCTCTCATTCGGTATAGAGTGA 57.950 43.478 0.00 0.00 35.90 3.41
150 151 4.083749 CGACCTCTCATTCGGTATAGAGTG 60.084 50.000 0.00 0.00 34.86 3.51
151 152 4.066490 CGACCTCTCATTCGGTATAGAGT 58.934 47.826 0.00 0.00 34.86 3.24
152 153 4.316645 TCGACCTCTCATTCGGTATAGAG 58.683 47.826 0.00 0.00 35.89 2.43
153 154 4.316645 CTCGACCTCTCATTCGGTATAGA 58.683 47.826 0.00 0.00 35.89 1.98
154 155 3.437395 CCTCGACCTCTCATTCGGTATAG 59.563 52.174 0.00 0.00 35.89 1.31
155 156 3.181447 ACCTCGACCTCTCATTCGGTATA 60.181 47.826 0.00 0.00 35.89 1.47
156 157 2.231529 CCTCGACCTCTCATTCGGTAT 58.768 52.381 0.00 0.00 35.89 2.73
157 158 1.064906 ACCTCGACCTCTCATTCGGTA 60.065 52.381 0.00 0.00 35.89 4.02
158 159 0.323542 ACCTCGACCTCTCATTCGGT 60.324 55.000 0.00 0.00 35.89 4.69
159 160 0.101399 CACCTCGACCTCTCATTCGG 59.899 60.000 0.00 0.00 35.89 4.30
160 161 1.095600 TCACCTCGACCTCTCATTCG 58.904 55.000 0.00 0.00 36.55 3.34
161 162 2.417515 GGTTCACCTCGACCTCTCATTC 60.418 54.545 0.00 0.00 33.08 2.67
162 163 1.550976 GGTTCACCTCGACCTCTCATT 59.449 52.381 0.00 0.00 33.08 2.57
163 164 1.187087 GGTTCACCTCGACCTCTCAT 58.813 55.000 0.00 0.00 33.08 2.90
164 165 1.241990 CGGTTCACCTCGACCTCTCA 61.242 60.000 0.00 0.00 33.69 3.27
165 166 1.242665 ACGGTTCACCTCGACCTCTC 61.243 60.000 0.00 0.00 33.69 3.20
166 167 1.228490 ACGGTTCACCTCGACCTCT 60.228 57.895 0.00 0.00 33.69 3.69
167 168 1.212229 GACGGTTCACCTCGACCTC 59.788 63.158 0.00 0.00 33.69 3.85
168 169 2.623915 CGACGGTTCACCTCGACCT 61.624 63.158 10.56 0.00 38.23 3.85
169 170 2.126580 CGACGGTTCACCTCGACC 60.127 66.667 10.56 0.00 38.23 4.79
170 171 2.804090 GCGACGGTTCACCTCGAC 60.804 66.667 17.00 8.30 38.23 4.20
171 172 4.047059 GGCGACGGTTCACCTCGA 62.047 66.667 17.00 0.00 38.23 4.04
172 173 2.203972 TAAGGCGACGGTTCACCTCG 62.204 60.000 11.34 11.34 32.70 4.63
173 174 0.175073 ATAAGGCGACGGTTCACCTC 59.825 55.000 0.00 0.00 32.70 3.85
174 175 0.175073 GATAAGGCGACGGTTCACCT 59.825 55.000 0.00 0.00 35.65 4.00
175 176 0.808847 GGATAAGGCGACGGTTCACC 60.809 60.000 0.00 0.00 0.00 4.02
176 177 0.108520 TGGATAAGGCGACGGTTCAC 60.109 55.000 0.00 0.00 0.00 3.18
177 178 0.108520 GTGGATAAGGCGACGGTTCA 60.109 55.000 0.00 0.00 0.00 3.18
178 179 0.808847 GGTGGATAAGGCGACGGTTC 60.809 60.000 0.00 0.00 0.00 3.62
179 180 1.219935 GGTGGATAAGGCGACGGTT 59.780 57.895 0.00 0.00 0.00 4.44
180 181 1.673808 GAGGTGGATAAGGCGACGGT 61.674 60.000 0.00 0.00 0.00 4.83
181 182 1.067582 GAGGTGGATAAGGCGACGG 59.932 63.158 0.00 0.00 0.00 4.79
182 183 1.067582 GGAGGTGGATAAGGCGACG 59.932 63.158 0.00 0.00 0.00 5.12
183 184 0.179081 GTGGAGGTGGATAAGGCGAC 60.179 60.000 0.00 0.00 0.00 5.19
184 185 1.672854 CGTGGAGGTGGATAAGGCGA 61.673 60.000 0.00 0.00 0.00 5.54
185 186 1.227263 CGTGGAGGTGGATAAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
186 187 0.179081 GTCGTGGAGGTGGATAAGGC 60.179 60.000 0.00 0.00 0.00 4.35
187 188 1.191535 TGTCGTGGAGGTGGATAAGG 58.808 55.000 0.00 0.00 0.00 2.69
188 189 2.430694 TCATGTCGTGGAGGTGGATAAG 59.569 50.000 0.00 0.00 0.00 1.73
189 190 2.430694 CTCATGTCGTGGAGGTGGATAA 59.569 50.000 0.00 0.00 0.00 1.75
190 191 2.031870 CTCATGTCGTGGAGGTGGATA 58.968 52.381 0.00 0.00 0.00 2.59
191 192 0.826715 CTCATGTCGTGGAGGTGGAT 59.173 55.000 0.00 0.00 0.00 3.41
192 193 0.251608 TCTCATGTCGTGGAGGTGGA 60.252 55.000 0.00 0.00 0.00 4.02
193 194 0.108615 GTCTCATGTCGTGGAGGTGG 60.109 60.000 0.00 0.00 0.00 4.61
194 195 0.603065 TGTCTCATGTCGTGGAGGTG 59.397 55.000 0.00 0.00 0.00 4.00
195 196 0.891373 CTGTCTCATGTCGTGGAGGT 59.109 55.000 0.00 0.00 0.00 3.85
196 197 1.133982 CTCTGTCTCATGTCGTGGAGG 59.866 57.143 0.00 0.00 0.00 4.30
197 198 1.468908 GCTCTGTCTCATGTCGTGGAG 60.469 57.143 0.00 0.00 0.00 3.86
198 199 0.528017 GCTCTGTCTCATGTCGTGGA 59.472 55.000 0.00 0.00 0.00 4.02
199 200 0.799917 CGCTCTGTCTCATGTCGTGG 60.800 60.000 0.00 0.00 0.00 4.94
200 201 0.169009 TCGCTCTGTCTCATGTCGTG 59.831 55.000 0.00 0.00 0.00 4.35
201 202 0.169230 GTCGCTCTGTCTCATGTCGT 59.831 55.000 0.00 0.00 0.00 4.34
202 203 0.449786 AGTCGCTCTGTCTCATGTCG 59.550 55.000 0.00 0.00 0.00 4.35
203 204 1.742831 AGAGTCGCTCTGTCTCATGTC 59.257 52.381 8.32 0.00 39.62 3.06
204 205 1.832883 AGAGTCGCTCTGTCTCATGT 58.167 50.000 8.32 0.00 39.62 3.21
205 206 2.790812 CGAAGAGTCGCTCTGTCTCATG 60.791 54.545 9.63 0.00 40.28 3.07
206 207 1.400142 CGAAGAGTCGCTCTGTCTCAT 59.600 52.381 9.63 0.00 40.28 2.90
207 208 0.799393 CGAAGAGTCGCTCTGTCTCA 59.201 55.000 9.63 0.00 40.28 3.27
208 209 3.596865 CGAAGAGTCGCTCTGTCTC 57.403 57.895 9.63 4.27 40.28 3.36
218 219 0.738389 CTCCTCCTCTGCGAAGAGTC 59.262 60.000 19.35 0.00 34.27 3.36
219 220 0.682855 CCTCCTCCTCTGCGAAGAGT 60.683 60.000 19.35 0.00 34.27 3.24
220 221 0.395036 TCCTCCTCCTCTGCGAAGAG 60.395 60.000 14.08 14.08 35.78 2.85
221 222 0.395036 CTCCTCCTCCTCTGCGAAGA 60.395 60.000 0.00 0.00 0.00 2.87
222 223 1.391157 CCTCCTCCTCCTCTGCGAAG 61.391 65.000 0.00 0.00 0.00 3.79
223 224 1.380515 CCTCCTCCTCCTCTGCGAA 60.381 63.158 0.00 0.00 0.00 4.70
224 225 2.277072 CCTCCTCCTCCTCTGCGA 59.723 66.667 0.00 0.00 0.00 5.10
225 226 1.827789 CTCCTCCTCCTCCTCTGCG 60.828 68.421 0.00 0.00 0.00 5.18
226 227 1.457455 CCTCCTCCTCCTCCTCTGC 60.457 68.421 0.00 0.00 0.00 4.26
227 228 0.185901 CTCCTCCTCCTCCTCCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
228 229 0.047176 TCTCCTCCTCCTCCTCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
229 230 1.158007 ATCTCCTCCTCCTCCTCCTC 58.842 60.000 0.00 0.00 0.00 3.71
230 231 0.859760 CATCTCCTCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
231 232 0.831711 GCATCTCCTCCTCCTCCTCC 60.832 65.000 0.00 0.00 0.00 4.30
232 233 0.831711 GGCATCTCCTCCTCCTCCTC 60.832 65.000 0.00 0.00 0.00 3.71
233 234 1.235696 GGCATCTCCTCCTCCTCCT 59.764 63.158 0.00 0.00 0.00 3.69
234 235 2.206536 CGGCATCTCCTCCTCCTCC 61.207 68.421 0.00 0.00 0.00 4.30
235 236 0.757188 TTCGGCATCTCCTCCTCCTC 60.757 60.000 0.00 0.00 0.00 3.71
236 237 0.105246 ATTCGGCATCTCCTCCTCCT 60.105 55.000 0.00 0.00 0.00 3.69
237 238 1.633774 TATTCGGCATCTCCTCCTCC 58.366 55.000 0.00 0.00 0.00 4.30
238 239 3.674682 CGAATATTCGGCATCTCCTCCTC 60.675 52.174 26.61 0.00 46.30 3.71
239 240 2.232452 CGAATATTCGGCATCTCCTCCT 59.768 50.000 26.61 0.00 46.30 3.69
240 241 2.611518 CGAATATTCGGCATCTCCTCC 58.388 52.381 26.61 0.00 46.30 4.30
268 269 0.896479 TCGGACTCGTGGTCATTGGA 60.896 55.000 11.78 3.14 46.16 3.53
283 284 3.744719 CTTGTCGGAGCCGTCGGA 61.745 66.667 17.49 0.00 40.74 4.55
295 296 3.274288 GAGATGTTGATGACCCCTTGTC 58.726 50.000 0.00 0.00 44.72 3.18
316 318 1.753463 ACTTCCTACTCGCCCGAGG 60.753 63.158 20.29 5.50 45.88 4.63
348 350 8.157476 ACACTGATTGAAACCAGAACTATACTT 58.843 33.333 5.22 0.00 34.65 2.24
352 354 8.918202 TTAACACTGATTGAAACCAGAACTAT 57.082 30.769 5.22 0.00 34.65 2.12
370 372 8.742777 ACATGCAACATAGATTTCATTAACACT 58.257 29.630 0.00 0.00 0.00 3.55
418 427 1.018910 AACCACACCCTTCGTTTTCG 58.981 50.000 0.00 0.00 45.64 3.46
443 452 0.895100 GTGCCCCTCATTTGTCTGCA 60.895 55.000 0.00 0.00 0.00 4.41
446 455 1.384191 GGGTGCCCCTCATTTGTCT 59.616 57.895 3.16 0.00 41.34 3.41
447 456 2.046285 CGGGTGCCCCTCATTTGTC 61.046 63.158 8.43 0.00 42.67 3.18
448 457 2.035626 CGGGTGCCCCTCATTTGT 59.964 61.111 8.43 0.00 42.67 2.83
462 471 4.760047 CCACGAACAGGAGCCGGG 62.760 72.222 2.18 0.00 0.00 5.73
464 473 2.432628 GTCCACGAACAGGAGCCG 60.433 66.667 0.00 0.00 35.42 5.52
466 475 3.952811 GTGTCCACGAACAGGAGC 58.047 61.111 0.00 0.00 35.42 4.70
487 496 0.104120 CGACCCTTCATATGTCCGCA 59.896 55.000 1.90 0.00 0.00 5.69
517 526 0.179073 CAGGGCATCTACAACCGGAG 60.179 60.000 9.46 1.96 0.00 4.63
519 528 0.251916 TTCAGGGCATCTACAACCGG 59.748 55.000 0.00 0.00 0.00 5.28
533 543 3.652057 AGGGATGTAATGGTGTTCAGG 57.348 47.619 0.00 0.00 0.00 3.86
545 555 7.625498 TGTGGAACATATATGAAGGGATGTA 57.375 36.000 19.63 0.00 45.67 2.29
575 585 6.961554 GTCGTGCAGTTTCTAATATTTTCCTG 59.038 38.462 0.00 0.00 0.00 3.86
579 589 7.667043 TGAGTCGTGCAGTTTCTAATATTTT 57.333 32.000 0.00 0.00 0.00 1.82
598 608 2.351726 GCACACACCCGATAAATGAGTC 59.648 50.000 0.00 0.00 0.00 3.36
634 644 2.314647 CCGTTGCCGTGTAGGTGTG 61.315 63.158 0.00 0.00 43.70 3.82
635 645 2.029964 CCGTTGCCGTGTAGGTGT 59.970 61.111 0.00 0.00 43.70 4.16
636 646 2.029964 ACCGTTGCCGTGTAGGTG 59.970 61.111 0.00 0.00 43.70 4.00
637 647 2.029964 CACCGTTGCCGTGTAGGT 59.970 61.111 0.00 0.00 43.70 3.08
638 648 3.419759 GCACCGTTGCCGTGTAGG 61.420 66.667 0.00 0.00 43.66 3.18
655 665 4.090642 GTGAGAGAATGTTTGTGCGAGTAG 59.909 45.833 0.00 0.00 0.00 2.57
665 675 6.287589 AGACGGAATAGTGAGAGAATGTTT 57.712 37.500 0.00 0.00 0.00 2.83
711 721 5.231702 TCGAAATGTTATTCAGACGAACCA 58.768 37.500 0.00 0.00 32.81 3.67
953 971 4.570663 GGCCCGATCTGACGACGG 62.571 72.222 0.00 11.13 45.24 4.79
1514 1534 2.238646 TCATCAGCTAAATCCCCGTGTT 59.761 45.455 0.00 0.00 0.00 3.32
1516 1536 2.620251 TCATCAGCTAAATCCCCGTG 57.380 50.000 0.00 0.00 0.00 4.94
1518 1538 5.977635 TGTATATCATCAGCTAAATCCCCG 58.022 41.667 0.00 0.00 0.00 5.73
1528 1548 9.023967 GTGAAAACCAAAATGTATATCATCAGC 57.976 33.333 0.00 0.00 35.48 4.26
1535 1555 9.777297 AGCAAAAGTGAAAACCAAAATGTATAT 57.223 25.926 0.00 0.00 0.00 0.86
1564 1584 5.641209 GCATCCCTATCAGTAAATACAGCAG 59.359 44.000 0.00 0.00 0.00 4.24
1712 1742 8.605947 CATCCCCTCTAATATATCAAACCTTGA 58.394 37.037 0.00 0.00 45.01 3.02
2045 2076 3.267483 TGGAAAATAGAGCTAACGGCAC 58.733 45.455 0.00 0.00 44.79 5.01
2050 2081 8.499403 AGAAGTTGATGGAAAATAGAGCTAAC 57.501 34.615 0.00 0.00 0.00 2.34
2087 2118 2.917971 GTCGCTAGTCTTTGTAGCACAG 59.082 50.000 3.24 0.00 42.69 3.66
2145 2176 4.490899 ACACACCCTAAACTACAACACA 57.509 40.909 0.00 0.00 0.00 3.72
2152 2183 4.160252 GGGATACGAACACACCCTAAACTA 59.840 45.833 0.00 0.00 37.75 2.24
2168 2199 2.959707 AGCAAGAGAACCTAGGGATACG 59.040 50.000 14.81 0.00 37.60 3.06
2197 2228 5.076182 CCAGATGAGCCAGTTCTATCTAGA 58.924 45.833 0.00 0.00 0.00 2.43
2273 2304 1.009335 CAATCGCCATGCACATCGG 60.009 57.895 0.00 0.00 0.00 4.18
2330 2361 1.065564 ACTGGCTGAATTGGCTCTCTC 60.066 52.381 0.00 0.00 0.00 3.20
2331 2362 0.990374 ACTGGCTGAATTGGCTCTCT 59.010 50.000 0.00 0.00 0.00 3.10
2376 2410 8.605325 TTTACTTGGCTAGATTCCTAGTAACT 57.395 34.615 15.96 0.00 44.99 2.24
2398 2432 2.573462 ACATCAGAGAAGGCCTGCTTTA 59.427 45.455 16.72 3.66 0.00 1.85
2487 2521 4.335315 TGCATTTTCAATCACCGGATCTAC 59.665 41.667 9.46 0.00 31.88 2.59
2494 2528 4.685165 TGATTTGTGCATTTTCAATCACCG 59.315 37.500 0.00 0.00 0.00 4.94
2519 2553 6.832520 TGCAAATAATAGCCTGTTCTTTCA 57.167 33.333 0.00 0.00 0.00 2.69
2523 2557 5.887598 TGTGATGCAAATAATAGCCTGTTCT 59.112 36.000 0.00 0.00 0.00 3.01
2840 2875 6.870439 TGAAATGTCAACTATCTCACAGTCAG 59.130 38.462 0.00 0.00 0.00 3.51
3172 3215 3.616956 AATTCGGCACTGATCTCTTCA 57.383 42.857 0.00 0.00 0.00 3.02
3178 3221 4.361451 ACATGAAAATTCGGCACTGATC 57.639 40.909 0.00 0.00 0.00 2.92
3217 3260 5.000591 TCATTCGGAAACATCAAAGCAGTA 58.999 37.500 0.00 0.00 0.00 2.74
3286 3329 8.035394 TGTTTGTGCCTAAAGTTAAAAACATGA 58.965 29.630 0.00 0.00 32.89 3.07
3376 3419 1.139989 CAAAGTGATGCAGACGTCGT 58.860 50.000 10.46 0.00 34.28 4.34
3454 3497 2.573941 GCAATTGCATCTCCTCAACC 57.426 50.000 25.36 0.00 41.59 3.77
3535 3578 3.380479 TCACGTGAGGTTTCTACAAGG 57.620 47.619 15.76 0.00 0.00 3.61
3544 3587 4.566987 GAATACTCCTTTCACGTGAGGTT 58.433 43.478 19.11 11.17 34.57 3.50
3592 3635 5.072329 ACTCCGAATCATTTCCACCATATCT 59.928 40.000 0.00 0.00 0.00 1.98
3868 3911 1.064389 GGAAAGAACAGATGGAGGGGG 60.064 57.143 0.00 0.00 0.00 5.40
3869 3912 1.635487 TGGAAAGAACAGATGGAGGGG 59.365 52.381 0.00 0.00 0.00 4.79
3898 3942 8.784043 GGAACATTTAACTCTTACATGTCTGTT 58.216 33.333 0.00 6.29 35.97 3.16
4011 4055 1.384525 TGCAAAGCTACAACAACGGT 58.615 45.000 0.00 0.00 0.00 4.83
4016 4060 6.486657 ACTCTTAAAGATGCAAAGCTACAACA 59.513 34.615 0.00 0.00 0.00 3.33
4383 4430 2.717639 ATAGCTGGTCATGTGTTCCC 57.282 50.000 0.00 0.00 0.00 3.97
4450 4497 9.632807 CAGCTTATTCTCTTCCTATACATGTAC 57.367 37.037 7.96 0.00 0.00 2.90
4517 4564 2.290367 TGCGTTCATGAAAAGAGGTGTG 59.710 45.455 10.35 0.00 0.00 3.82
4659 4706 9.624697 GAAGAGCTAGACATAATCATAGAACTG 57.375 37.037 0.00 0.00 0.00 3.16
4690 4737 2.029110 GGTGTCATGTCCATTGTTTGGG 60.029 50.000 0.00 0.00 46.45 4.12
4699 4746 3.070446 AGTTAACTTCGGTGTCATGTCCA 59.930 43.478 1.12 0.00 0.00 4.02
4740 4787 3.243168 TGCTGAACATGTTCTTTCTGCAC 60.243 43.478 32.57 16.34 45.90 4.57
5039 5086 4.016444 ACAGGTTGTTTCATGACAGTGTT 58.984 39.130 0.00 0.00 0.00 3.32
5070 5117 4.261801 GGCCTCAAGCTATAAACACTTCA 58.738 43.478 0.00 0.00 43.05 3.02
5093 5140 5.360591 AGTATAAGCACCTACATGAAGCAC 58.639 41.667 0.00 0.00 0.00 4.40
5290 5337 7.420800 CCAACACTATCAGGAAAAGATTATGC 58.579 38.462 0.00 0.00 0.00 3.14
5517 5564 0.741221 GTTGGCCCGTAGAAGAGCAG 60.741 60.000 0.00 0.00 0.00 4.24
5611 5660 5.177696 ACAGTGAACGCTTAGAATTGTCTTC 59.822 40.000 0.00 0.00 35.12 2.87
5818 6045 7.039714 TGACGCTTCCTATATATGACAATCTGT 60.040 37.037 0.00 0.00 0.00 3.41
5820 6047 7.468141 TGACGCTTCCTATATATGACAATCT 57.532 36.000 0.00 0.00 0.00 2.40
5821 6048 6.254589 GCTGACGCTTCCTATATATGACAATC 59.745 42.308 0.00 0.00 0.00 2.67
6009 6236 1.729586 TACCAACCTGAGGAGTTGCT 58.270 50.000 4.99 0.00 42.63 3.91
6034 6261 9.552114 CAGATGAATAAACTAGCAAAAACTCAG 57.448 33.333 0.00 0.00 0.00 3.35
6295 6522 7.559897 AGAAAAATAAAGAACTCCCAACACAGA 59.440 33.333 0.00 0.00 0.00 3.41
6362 6593 4.263506 CCACTAGGGAGAAAAGGACACATT 60.264 45.833 0.00 0.00 40.01 2.71
6373 6605 1.553690 GGCTGCACCACTAGGGAGAA 61.554 60.000 0.50 0.00 41.15 2.87
6374 6606 1.990060 GGCTGCACCACTAGGGAGA 60.990 63.158 0.50 0.00 41.15 3.71
6413 6645 3.415212 CTTGACCCAGCTTCAAATCAGA 58.585 45.455 1.25 0.00 32.61 3.27
6546 6778 7.912250 GTCCAAGCATACATAGACAAGAAAATG 59.088 37.037 0.00 0.00 0.00 2.32
6681 6913 8.635983 GTGAAACTGTTAAACAAGAAACAAGAC 58.364 33.333 0.00 0.00 35.32 3.01
6979 7373 0.452784 GCCGAACAACGACAGCAATC 60.453 55.000 0.00 0.00 45.77 2.67
7009 7403 5.929697 ACAATATTCACTATCACATGCCG 57.070 39.130 0.00 0.00 0.00 5.69
7157 7558 6.660521 AGACAACCTATGATGAAATTCAGCAA 59.339 34.615 18.04 6.93 46.47 3.91
7229 7631 5.664294 TTCCTATAAAACCTGCGTACTCA 57.336 39.130 0.00 0.00 0.00 3.41
7831 8236 2.488347 GGCTCCCTTGGAAGTAACAACA 60.488 50.000 0.00 0.00 0.00 3.33
7858 8263 5.525012 TCATCTAATCAAAATGAGTCTGCGG 59.475 40.000 0.00 0.00 0.00 5.69
7893 8299 0.457853 GCATGCAGACATTGGCACTG 60.458 55.000 14.21 2.97 43.75 3.66
8290 8696 9.709495 AGCACATGATAAAACATACAAAAACAT 57.291 25.926 0.00 0.00 0.00 2.71
8321 8728 8.458843 ACAATAGCAAAGCACGTAAAAATAGAT 58.541 29.630 0.00 0.00 0.00 1.98
8324 8731 8.293867 AGAACAATAGCAAAGCACGTAAAAATA 58.706 29.630 0.00 0.00 0.00 1.40
8352 8760 0.099968 CGTCCAAATCAGCATGCAGG 59.900 55.000 21.98 11.90 34.76 4.85
8370 8778 3.366392 CACAAATGAGGTGCGAACG 57.634 52.632 0.00 0.00 0.00 3.95
8386 8794 2.770164 AGTTATCCACAGGAGTGCAC 57.230 50.000 9.40 9.40 44.53 4.57
8400 8808 8.746530 TCGGACACACTTATTCTCTAAAGTTAT 58.253 33.333 0.00 0.00 33.72 1.89
8407 8815 7.555195 TCATAAGTCGGACACACTTATTCTCTA 59.445 37.037 11.27 0.00 42.10 2.43
8410 8818 6.525578 TCATAAGTCGGACACACTTATTCT 57.474 37.500 11.27 0.00 42.10 2.40
8442 8850 2.859165 TCGGAAGTCCAGCATCTTTT 57.141 45.000 0.00 0.00 35.14 2.27
8472 8880 1.336240 GCAGAGAACACACATTTGGCC 60.336 52.381 0.00 0.00 0.00 5.36
8529 8937 6.237332 CGTGAGTACAAGCGAGAAAGAAATAG 60.237 42.308 0.00 0.00 0.00 1.73
8535 8943 1.986378 CCGTGAGTACAAGCGAGAAAG 59.014 52.381 0.00 0.00 0.00 2.62
8554 8962 4.142004 ACCGTGGTTTGATCATACTAGACC 60.142 45.833 14.76 8.49 0.00 3.85
8560 8968 3.802685 GCTAGACCGTGGTTTGATCATAC 59.197 47.826 7.69 7.69 0.00 2.39
8566 8974 1.876416 GCAAGCTAGACCGTGGTTTGA 60.876 52.381 0.00 0.00 0.00 2.69
8567 8975 0.517316 GCAAGCTAGACCGTGGTTTG 59.483 55.000 0.00 0.00 0.00 2.93
8590 8998 5.755813 CAAGAAATGGATCCTCGCATAAAG 58.244 41.667 14.23 0.00 0.00 1.85
8637 9045 7.054124 GGTTTGTCCTAATTATGATCTCACCA 58.946 38.462 0.00 0.00 0.00 4.17
8718 9126 2.694628 ACATGTTGTTGCATCACAGGTT 59.305 40.909 0.00 0.00 0.00 3.50
8731 9139 4.927267 TTAATCTCCTCCCACATGTTGT 57.073 40.909 0.00 0.00 0.00 3.32
8757 9165 1.271379 ACCCGCATGCACTTTAGTTCT 60.271 47.619 19.57 0.00 0.00 3.01
8758 9166 1.130561 GACCCGCATGCACTTTAGTTC 59.869 52.381 19.57 0.00 0.00 3.01
8759 9167 1.165270 GACCCGCATGCACTTTAGTT 58.835 50.000 19.57 0.00 0.00 2.24
8760 9168 0.036164 TGACCCGCATGCACTTTAGT 59.964 50.000 19.57 4.74 0.00 2.24
8761 9169 1.164411 TTGACCCGCATGCACTTTAG 58.836 50.000 19.57 0.00 0.00 1.85
8785 9193 0.039618 AGGTTTTCATGGCGGTGGAT 59.960 50.000 0.00 0.00 0.00 3.41
8788 9196 0.958091 TTGAGGTTTTCATGGCGGTG 59.042 50.000 0.00 0.00 35.27 4.94
8793 9201 3.252215 TGCTAACGTTGAGGTTTTCATGG 59.748 43.478 11.99 0.00 35.27 3.66
8870 9278 9.131791 GGCCAGAGATTTTTCATTTACCTATAA 57.868 33.333 0.00 0.00 0.00 0.98
8871 9279 8.278639 TGGCCAGAGATTTTTCATTTACCTATA 58.721 33.333 0.00 0.00 0.00 1.31
8872 9280 7.125391 TGGCCAGAGATTTTTCATTTACCTAT 58.875 34.615 0.00 0.00 0.00 2.57
8873 9281 6.489603 TGGCCAGAGATTTTTCATTTACCTA 58.510 36.000 0.00 0.00 0.00 3.08
8875 9283 5.418840 TCTGGCCAGAGATTTTTCATTTACC 59.581 40.000 32.00 0.00 32.82 2.85
8876 9284 6.515272 TCTGGCCAGAGATTTTTCATTTAC 57.485 37.500 32.00 0.00 32.82 2.01
8877 9285 6.349280 CGTTCTGGCCAGAGATTTTTCATTTA 60.349 38.462 33.16 12.95 38.88 1.40
8878 9286 5.565439 CGTTCTGGCCAGAGATTTTTCATTT 60.565 40.000 33.16 0.00 38.88 2.32
8879 9287 4.082571 CGTTCTGGCCAGAGATTTTTCATT 60.083 41.667 33.16 0.00 38.88 2.57
8880 9288 3.441572 CGTTCTGGCCAGAGATTTTTCAT 59.558 43.478 33.16 0.00 38.88 2.57
8881 9289 2.813754 CGTTCTGGCCAGAGATTTTTCA 59.186 45.455 33.16 15.22 38.88 2.69
8882 9290 2.162408 CCGTTCTGGCCAGAGATTTTTC 59.838 50.000 33.16 17.34 38.88 2.29
8902 9310 2.037527 AGAGGAGGGACGGTGACC 59.962 66.667 0.00 0.00 0.00 4.02
8903 9311 2.053277 GGAGAGGAGGGACGGTGAC 61.053 68.421 0.00 0.00 0.00 3.67
8904 9312 2.239439 AGGAGAGGAGGGACGGTGA 61.239 63.158 0.00 0.00 0.00 4.02
8905 9313 2.055042 CAGGAGAGGAGGGACGGTG 61.055 68.421 0.00 0.00 0.00 4.94
8906 9314 2.360980 CAGGAGAGGAGGGACGGT 59.639 66.667 0.00 0.00 0.00 4.83
8907 9315 2.443016 CCAGGAGAGGAGGGACGG 60.443 72.222 0.00 0.00 0.00 4.79
8908 9316 3.151022 GCCAGGAGAGGAGGGACG 61.151 72.222 0.00 0.00 0.00 4.79
8909 9317 3.151022 CGCCAGGAGAGGAGGGAC 61.151 72.222 0.00 0.00 0.00 4.46
8910 9318 3.673597 ACGCCAGGAGAGGAGGGA 61.674 66.667 0.00 0.00 32.16 4.20
8911 9319 3.465403 CACGCCAGGAGAGGAGGG 61.465 72.222 0.00 0.00 32.16 4.30
8912 9320 4.154347 GCACGCCAGGAGAGGAGG 62.154 72.222 0.00 0.00 32.16 4.30
8913 9321 4.504916 CGCACGCCAGGAGAGGAG 62.505 72.222 0.00 0.00 34.32 3.69
8944 9352 1.812922 CGACCTGCTGCTTGGCTAG 60.813 63.158 11.12 0.00 0.00 3.42
8945 9353 2.265739 CGACCTGCTGCTTGGCTA 59.734 61.111 11.12 0.00 0.00 3.93
8946 9354 4.711949 CCGACCTGCTGCTTGGCT 62.712 66.667 11.12 1.19 0.00 4.75
8964 9372 1.228094 TGTGCGAATTGTGCCCAGA 60.228 52.632 0.00 0.00 0.00 3.86
8980 9388 4.858692 GTGTCGTACCGTGTATTTATGTGT 59.141 41.667 0.00 0.00 0.00 3.72
8982 9390 5.314923 AGTGTCGTACCGTGTATTTATGT 57.685 39.130 0.00 0.00 0.00 2.29
9013 9421 3.573538 TCCAATCACAGGTTGGTTCATTG 59.426 43.478 8.75 0.00 45.05 2.82
9015 9423 3.524095 TCCAATCACAGGTTGGTTCAT 57.476 42.857 8.75 0.00 45.05 2.57
9017 9425 2.493278 CCATCCAATCACAGGTTGGTTC 59.507 50.000 8.75 0.00 45.05 3.62
9018 9426 2.528564 CCATCCAATCACAGGTTGGTT 58.471 47.619 8.75 0.00 45.05 3.67
9019 9427 2.220653 CCATCCAATCACAGGTTGGT 57.779 50.000 8.75 0.00 45.05 3.67
9020 9428 2.220653 ACCATCCAATCACAGGTTGG 57.779 50.000 2.61 2.61 46.76 3.77
9021 9429 4.588899 TCTAACCATCCAATCACAGGTTG 58.411 43.478 0.00 0.00 42.19 3.77
9022 9430 4.848357 CTCTAACCATCCAATCACAGGTT 58.152 43.478 0.00 0.00 44.23 3.50
9023 9431 3.370953 GCTCTAACCATCCAATCACAGGT 60.371 47.826 0.00 0.00 0.00 4.00
9024 9432 3.209410 GCTCTAACCATCCAATCACAGG 58.791 50.000 0.00 0.00 0.00 4.00
9025 9433 2.868583 CGCTCTAACCATCCAATCACAG 59.131 50.000 0.00 0.00 0.00 3.66
9026 9434 2.905075 CGCTCTAACCATCCAATCACA 58.095 47.619 0.00 0.00 0.00 3.58
9027 9435 1.599542 GCGCTCTAACCATCCAATCAC 59.400 52.381 0.00 0.00 0.00 3.06
9028 9436 1.486310 AGCGCTCTAACCATCCAATCA 59.514 47.619 2.64 0.00 0.00 2.57
9029 9437 2.246719 AGCGCTCTAACCATCCAATC 57.753 50.000 2.64 0.00 0.00 2.67
9030 9438 2.171448 AGAAGCGCTCTAACCATCCAAT 59.829 45.455 12.06 0.00 30.22 3.16
9031 9439 1.555075 AGAAGCGCTCTAACCATCCAA 59.445 47.619 12.06 0.00 30.22 3.53
9032 9440 1.134699 CAGAAGCGCTCTAACCATCCA 60.135 52.381 12.06 0.00 31.12 3.41
9033 9441 1.134670 ACAGAAGCGCTCTAACCATCC 60.135 52.381 12.06 0.00 31.12 3.51
9034 9442 2.159170 AGACAGAAGCGCTCTAACCATC 60.159 50.000 12.06 1.80 31.12 3.51
9035 9443 1.827969 AGACAGAAGCGCTCTAACCAT 59.172 47.619 12.06 0.00 31.12 3.55
9036 9444 1.067565 CAGACAGAAGCGCTCTAACCA 60.068 52.381 12.06 0.00 31.12 3.67
9037 9445 1.067495 ACAGACAGAAGCGCTCTAACC 60.067 52.381 12.06 0.00 31.12 2.85
9038 9446 2.355717 ACAGACAGAAGCGCTCTAAC 57.644 50.000 12.06 2.79 31.12 2.34
9039 9447 3.082548 AGTACAGACAGAAGCGCTCTAA 58.917 45.455 12.06 0.00 31.12 2.10
9040 9448 2.420372 CAGTACAGACAGAAGCGCTCTA 59.580 50.000 12.06 0.00 31.12 2.43
9041 9449 1.201181 CAGTACAGACAGAAGCGCTCT 59.799 52.381 12.06 7.00 33.23 4.09
9042 9450 1.200252 TCAGTACAGACAGAAGCGCTC 59.800 52.381 12.06 4.30 0.00 5.03
9043 9451 1.248486 TCAGTACAGACAGAAGCGCT 58.752 50.000 2.64 2.64 0.00 5.92
9044 9452 1.923204 CATCAGTACAGACAGAAGCGC 59.077 52.381 0.00 0.00 0.00 5.92
9045 9453 3.223423 ACATCAGTACAGACAGAAGCG 57.777 47.619 0.00 0.00 0.00 4.68
9046 9454 7.421530 TTTTAACATCAGTACAGACAGAAGC 57.578 36.000 0.00 0.00 0.00 3.86
9084 9492 1.010908 GTGCGCGTACCGTGTTTTT 60.011 52.632 17.10 0.00 39.70 1.94
9085 9493 2.627555 GTGCGCGTACCGTGTTTT 59.372 55.556 17.10 0.00 39.70 2.43
9086 9494 3.694394 CGTGCGCGTACCGTGTTT 61.694 61.111 21.71 0.00 39.70 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.