Multiple sequence alignment - TraesCS5D01G207500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G207500 chr5D 100.000 3766 0 0 1 3766 313373220 313369455 0.000000e+00 6955.0
1 TraesCS5D01G207500 chr5D 94.245 278 12 1 385 658 255469896 255469619 4.500000e-114 422.0
2 TraesCS5D01G207500 chr5A 90.278 3096 152 55 744 3766 407546815 407543796 0.000000e+00 3912.0
3 TraesCS5D01G207500 chr5A 83.957 374 39 10 20 384 407547192 407546831 4.660000e-89 339.0
4 TraesCS5D01G207500 chr5B 92.638 2540 126 31 687 3191 361006339 361003826 0.000000e+00 3598.0
5 TraesCS5D01G207500 chr5B 91.424 583 38 5 3191 3766 361003783 361003206 0.000000e+00 789.0
6 TraesCS5D01G207500 chr5B 89.655 145 14 1 242 385 361006475 361006331 2.310000e-42 183.0
7 TraesCS5D01G207500 chr2D 94.585 277 11 1 386 658 124470060 124470336 3.480000e-115 425.0
8 TraesCS5D01G207500 chr2D 94.224 277 12 1 386 658 293156094 293156370 1.620000e-113 420.0
9 TraesCS5D01G207500 chr2D 94.224 277 11 2 386 658 154946666 154946941 5.820000e-113 418.0
10 TraesCS5D01G207500 chr2D 93.885 278 13 1 385 658 589697816 589697539 2.090000e-112 416.0
11 TraesCS5D01G207500 chr7D 94.245 278 12 1 385 658 586745240 586745517 4.500000e-114 422.0
12 TraesCS5D01G207500 chr7D 93.863 277 13 1 386 658 230444692 230444968 7.530000e-112 414.0
13 TraesCS5D01G207500 chr7D 79.189 567 107 9 1799 2358 189171230 189171792 2.120000e-102 383.0
14 TraesCS5D01G207500 chr6D 93.863 277 13 1 386 658 30010308 30010032 7.530000e-112 414.0
15 TraesCS5D01G207500 chr6D 87.083 240 16 7 2487 2726 388109675 388109451 1.340000e-64 257.0
16 TraesCS5D01G207500 chr6D 91.262 103 8 1 2462 2564 16285958 16285857 5.070000e-29 139.0
17 TraesCS5D01G207500 chr6D 83.459 133 7 6 2591 2723 16285859 16285742 3.980000e-20 110.0
18 TraesCS5D01G207500 chr6D 80.556 144 10 7 2580 2723 388109451 388109326 1.110000e-15 95.3
19 TraesCS5D01G207500 chr4D 93.863 277 13 1 386 658 75227630 75227906 7.530000e-112 414.0
20 TraesCS5D01G207500 chr4D 100.000 28 0 0 664 691 443802070 443802043 7.000000e-03 52.8
21 TraesCS5D01G207500 chr4B 89.241 158 16 1 2240 2396 385938889 385939046 2.970000e-46 196.0
22 TraesCS5D01G207500 chr7B 88.028 142 16 1 2243 2383 497452703 497452562 2.330000e-37 167.0
23 TraesCS5D01G207500 chr3B 91.262 103 8 1 2231 2332 498341601 498341703 5.070000e-29 139.0
24 TraesCS5D01G207500 chr1D 100.000 47 0 0 2679 2725 267382514 267382468 1.860000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G207500 chr5D 313369455 313373220 3765 True 6955.000000 6955 100.0000 1 3766 1 chr5D.!!$R2 3765
1 TraesCS5D01G207500 chr5A 407543796 407547192 3396 True 2125.500000 3912 87.1175 20 3766 2 chr5A.!!$R1 3746
2 TraesCS5D01G207500 chr5B 361003206 361006475 3269 True 1523.333333 3598 91.2390 242 3766 3 chr5B.!!$R1 3524
3 TraesCS5D01G207500 chr7D 189171230 189171792 562 False 383.000000 383 79.1890 1799 2358 1 chr7D.!!$F1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 666 0.108329 GCTCCTAGGCGTTGCACTAA 60.108 55.0 2.96 0.00 0.00 2.24 F
691 717 0.249657 TTGTCAAATTTGCCGCCACC 60.250 50.0 13.54 0.00 0.00 4.61 F
723 749 0.527385 GATCACACGAGCAGCTCTCC 60.527 60.0 20.39 0.00 38.62 3.71 F
740 766 0.609957 TCCAGTCAAGCATGGCCAAG 60.610 55.0 10.96 6.55 36.47 3.61 F
815 845 0.831288 TAAGGTTTCCCGTCCCGTCA 60.831 55.0 0.00 0.00 35.12 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1761 1.065928 ATCTTCGTCCGCGTCCATC 59.934 57.895 4.92 0.0 39.49 3.51 R
2085 2136 1.687493 GGAGGTGAGGAGGTCCAGG 60.687 68.421 0.00 0.0 38.89 4.45 R
2602 2653 4.719106 GCACTCCAGGCTGCTGCT 62.719 66.667 15.64 0.0 39.59 4.24 R
2739 2790 2.791347 TTACATACAATGGTGGCGGT 57.209 45.000 0.00 0.0 33.60 5.68 R
2796 2855 1.212616 GAATTCATCCTCTCGTGGCG 58.787 55.000 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.739077 AGTGCACACAAACCTTTGC 57.261 47.368 21.04 0.00 41.79 3.68
61 64 0.648441 TCCATTAACGTTCGATGCGC 59.352 50.000 2.82 0.00 0.00 6.09
69 72 1.423845 GTTCGATGCGCCGTTTGAT 59.576 52.632 4.18 0.00 0.00 2.57
88 91 4.489771 GGTCCATGTGGCCCGGAG 62.490 72.222 0.73 0.00 34.44 4.63
113 116 2.254951 TGCGTTTTGATGCAGGCG 59.745 55.556 0.00 0.00 35.90 5.52
115 118 1.797537 GCGTTTTGATGCAGGCGTC 60.798 57.895 6.54 6.54 0.00 5.19
117 120 1.574428 GTTTTGATGCAGGCGTCGT 59.426 52.632 8.79 0.00 34.87 4.34
128 131 3.637714 GCGTCGTGCCTTGAGAAA 58.362 55.556 0.00 0.00 37.76 2.52
138 141 3.932089 GTGCCTTGAGAAAGTTTGCAAAA 59.068 39.130 14.67 0.00 0.00 2.44
139 142 4.391523 GTGCCTTGAGAAAGTTTGCAAAAA 59.608 37.500 14.67 1.62 0.00 1.94
158 161 1.813102 AAAATTGTTGGAGGGGGCAA 58.187 45.000 0.00 0.00 0.00 4.52
159 162 1.813102 AAATTGTTGGAGGGGGCAAA 58.187 45.000 0.00 0.00 0.00 3.68
161 164 2.938428 ATTGTTGGAGGGGGCAAATA 57.062 45.000 0.00 0.00 0.00 1.40
163 166 2.157640 TGTTGGAGGGGGCAAATATG 57.842 50.000 0.00 0.00 0.00 1.78
187 190 4.246458 TGTTGTTGTTGGTTAAGTTTGCC 58.754 39.130 0.00 0.00 0.00 4.52
189 192 4.379339 TGTTGTTGGTTAAGTTTGCCTC 57.621 40.909 0.00 0.00 0.00 4.70
195 198 3.904717 TGGTTAAGTTTGCCTCTGGAAA 58.095 40.909 0.00 0.00 0.00 3.13
199 202 5.243954 GGTTAAGTTTGCCTCTGGAAAGAAT 59.756 40.000 0.00 0.00 0.00 2.40
200 203 4.861102 AAGTTTGCCTCTGGAAAGAATG 57.139 40.909 0.00 0.00 0.00 2.67
213 216 5.830912 TGGAAAGAATGTAAGCACAGTTTG 58.169 37.500 0.00 0.00 38.30 2.93
221 224 2.143876 AAGCACAGTTTGGACCAAGT 57.856 45.000 7.07 0.00 0.00 3.16
222 225 3.290948 AAGCACAGTTTGGACCAAGTA 57.709 42.857 7.07 0.00 0.00 2.24
242 245 7.416438 CCAAGTATACGACACTCTTCCAAGTAT 60.416 40.741 0.00 0.00 0.00 2.12
243 246 7.261829 AGTATACGACACTCTTCCAAGTATC 57.738 40.000 0.00 0.00 0.00 2.24
244 247 3.870633 ACGACACTCTTCCAAGTATCC 57.129 47.619 0.00 0.00 0.00 2.59
245 248 3.432378 ACGACACTCTTCCAAGTATCCT 58.568 45.455 0.00 0.00 0.00 3.24
246 249 3.193691 ACGACACTCTTCCAAGTATCCTG 59.806 47.826 0.00 0.00 0.00 3.86
247 250 3.429547 CGACACTCTTCCAAGTATCCTGG 60.430 52.174 0.00 0.00 0.00 4.45
248 251 2.840651 ACACTCTTCCAAGTATCCTGGG 59.159 50.000 0.00 0.00 32.31 4.45
249 252 2.840651 CACTCTTCCAAGTATCCTGGGT 59.159 50.000 0.00 0.00 32.96 4.51
250 253 2.840651 ACTCTTCCAAGTATCCTGGGTG 59.159 50.000 0.00 0.00 32.96 4.61
263 273 1.956477 CCTGGGTGTTTGACTTCCTTG 59.044 52.381 0.00 0.00 0.00 3.61
283 293 2.106338 TGGAGCAGTTGGAAAGATGACA 59.894 45.455 0.00 0.00 0.00 3.58
286 296 1.197721 GCAGTTGGAAAGATGACACCG 59.802 52.381 0.00 0.00 0.00 4.94
289 299 2.104111 AGTTGGAAAGATGACACCGTCA 59.896 45.455 0.00 0.00 46.90 4.35
299 309 0.663568 GACACCGTCAACGAGTGGAG 60.664 60.000 20.36 2.22 41.46 3.86
312 322 2.732597 CGAGTGGAGTCGTCAGATTTCC 60.733 54.545 0.00 0.00 35.14 3.13
394 420 4.671406 CCACCACCGGCAAATTTG 57.329 55.556 14.03 14.03 0.00 2.32
395 421 2.045280 CCACCACCGGCAAATTTGA 58.955 52.632 22.31 0.00 0.00 2.69
396 422 0.319469 CCACCACCGGCAAATTTGAC 60.319 55.000 22.31 18.50 0.00 3.18
397 423 0.387202 CACCACCGGCAAATTTGACA 59.613 50.000 23.49 0.00 35.35 3.58
398 424 1.115467 ACCACCGGCAAATTTGACAA 58.885 45.000 23.49 0.00 35.35 3.18
399 425 1.482593 ACCACCGGCAAATTTGACAAA 59.517 42.857 23.49 2.48 35.35 2.83
400 426 2.103941 ACCACCGGCAAATTTGACAAAT 59.896 40.909 23.49 7.62 35.35 2.32
401 427 3.137533 CCACCGGCAAATTTGACAAATT 58.862 40.909 23.49 18.41 42.62 1.82
427 453 8.996024 TGACTTATAGACGAAATCAAATCACA 57.004 30.769 0.00 0.00 0.00 3.58
428 454 9.087424 TGACTTATAGACGAAATCAAATCACAG 57.913 33.333 0.00 0.00 0.00 3.66
429 455 9.302345 GACTTATAGACGAAATCAAATCACAGA 57.698 33.333 0.00 0.00 0.00 3.41
430 456 9.653287 ACTTATAGACGAAATCAAATCACAGAA 57.347 29.630 0.00 0.00 0.00 3.02
431 457 9.907576 CTTATAGACGAAATCAAATCACAGAAC 57.092 33.333 0.00 0.00 0.00 3.01
432 458 5.269459 AGACGAAATCAAATCACAGAACG 57.731 39.130 0.00 0.00 0.00 3.95
433 459 4.988540 AGACGAAATCAAATCACAGAACGA 59.011 37.500 0.00 0.00 0.00 3.85
434 460 5.465390 AGACGAAATCAAATCACAGAACGAA 59.535 36.000 0.00 0.00 0.00 3.85
435 461 5.440685 ACGAAATCAAATCACAGAACGAAC 58.559 37.500 0.00 0.00 0.00 3.95
436 462 5.236478 ACGAAATCAAATCACAGAACGAACT 59.764 36.000 0.00 0.00 0.00 3.01
437 463 5.561499 CGAAATCAAATCACAGAACGAACTG 59.439 40.000 10.78 10.78 42.78 3.16
450 476 6.943981 CAGAACGAACTGTGAAACTATTTCA 58.056 36.000 0.00 0.00 46.68 2.69
457 483 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
458 484 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
459 485 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
460 486 2.024176 AACTATTTCACGCGGCTGAT 57.976 45.000 12.47 1.51 0.00 2.90
461 487 1.571919 ACTATTTCACGCGGCTGATC 58.428 50.000 12.47 0.00 0.00 2.92
462 488 1.137086 ACTATTTCACGCGGCTGATCT 59.863 47.619 12.47 0.00 0.00 2.75
463 489 2.205074 CTATTTCACGCGGCTGATCTT 58.795 47.619 12.47 0.00 0.00 2.40
464 490 1.453155 ATTTCACGCGGCTGATCTTT 58.547 45.000 12.47 0.00 0.00 2.52
465 491 1.234821 TTTCACGCGGCTGATCTTTT 58.765 45.000 12.47 0.00 0.00 2.27
466 492 1.234821 TTCACGCGGCTGATCTTTTT 58.765 45.000 12.47 0.00 0.00 1.94
467 493 0.516877 TCACGCGGCTGATCTTTTTG 59.483 50.000 12.47 0.00 0.00 2.44
468 494 0.238289 CACGCGGCTGATCTTTTTGT 59.762 50.000 12.47 0.00 0.00 2.83
469 495 0.238289 ACGCGGCTGATCTTTTTGTG 59.762 50.000 12.47 0.00 0.00 3.33
470 496 0.238289 CGCGGCTGATCTTTTTGTGT 59.762 50.000 0.00 0.00 0.00 3.72
471 497 1.689959 GCGGCTGATCTTTTTGTGTG 58.310 50.000 0.00 0.00 0.00 3.82
472 498 1.266718 GCGGCTGATCTTTTTGTGTGA 59.733 47.619 0.00 0.00 0.00 3.58
473 499 2.918131 GCGGCTGATCTTTTTGTGTGAC 60.918 50.000 0.00 0.00 0.00 3.67
474 500 2.662791 CGGCTGATCTTTTTGTGTGACG 60.663 50.000 0.00 0.00 0.00 4.35
475 501 2.310577 GCTGATCTTTTTGTGTGACGC 58.689 47.619 0.00 0.00 0.00 5.19
476 502 2.918131 GCTGATCTTTTTGTGTGACGCC 60.918 50.000 0.00 0.00 0.00 5.68
477 503 1.606668 TGATCTTTTTGTGTGACGCCC 59.393 47.619 0.00 0.00 0.00 6.13
478 504 1.606668 GATCTTTTTGTGTGACGCCCA 59.393 47.619 0.00 0.00 0.00 5.36
479 505 1.464734 TCTTTTTGTGTGACGCCCAA 58.535 45.000 0.00 0.00 0.00 4.12
480 506 1.133407 TCTTTTTGTGTGACGCCCAAC 59.867 47.619 0.00 0.00 0.00 3.77
481 507 1.134175 CTTTTTGTGTGACGCCCAACT 59.866 47.619 0.00 0.00 0.00 3.16
482 508 0.736053 TTTTGTGTGACGCCCAACTC 59.264 50.000 0.00 0.00 0.00 3.01
483 509 1.433053 TTTGTGTGACGCCCAACTCG 61.433 55.000 0.00 0.00 0.00 4.18
484 510 2.028484 GTGTGACGCCCAACTCGA 59.972 61.111 0.00 0.00 0.00 4.04
485 511 1.593209 GTGTGACGCCCAACTCGAA 60.593 57.895 0.00 0.00 0.00 3.71
486 512 1.300620 TGTGACGCCCAACTCGAAG 60.301 57.895 0.00 0.00 0.00 3.79
487 513 2.027625 GTGACGCCCAACTCGAAGG 61.028 63.158 0.00 0.00 0.00 3.46
488 514 3.119096 GACGCCCAACTCGAAGGC 61.119 66.667 5.57 5.57 43.53 4.35
492 518 4.697756 CCCAACTCGAAGGCGCCA 62.698 66.667 31.54 6.61 37.46 5.69
493 519 3.423154 CCAACTCGAAGGCGCCAC 61.423 66.667 31.54 20.88 37.46 5.01
494 520 2.664851 CAACTCGAAGGCGCCACA 60.665 61.111 31.54 7.91 37.46 4.17
495 521 2.665185 AACTCGAAGGCGCCACAC 60.665 61.111 31.54 17.81 37.46 3.82
496 522 3.165160 AACTCGAAGGCGCCACACT 62.165 57.895 31.54 9.96 37.46 3.55
497 523 1.812686 AACTCGAAGGCGCCACACTA 61.813 55.000 31.54 10.22 37.46 2.74
498 524 1.805945 CTCGAAGGCGCCACACTAC 60.806 63.158 31.54 11.50 37.46 2.73
499 525 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
500 526 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
501 527 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
502 528 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
503 529 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
504 530 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
505 531 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
506 532 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
507 533 1.831389 CGCCACACTACACTGTGCAC 61.831 60.000 10.75 10.75 40.33 4.57
508 534 1.507141 GCCACACTACACTGTGCACC 61.507 60.000 15.69 0.00 40.33 5.01
509 535 1.221466 CCACACTACACTGTGCACCG 61.221 60.000 15.69 11.05 40.33 4.94
510 536 1.594293 ACACTACACTGTGCACCGC 60.594 57.895 15.69 0.00 41.30 5.68
511 537 2.030562 ACTACACTGTGCACCGCC 59.969 61.111 15.69 0.00 0.00 6.13
512 538 2.343758 CTACACTGTGCACCGCCT 59.656 61.111 15.69 0.00 0.00 5.52
513 539 1.738099 CTACACTGTGCACCGCCTC 60.738 63.158 15.69 0.00 0.00 4.70
514 540 2.434658 CTACACTGTGCACCGCCTCA 62.435 60.000 15.69 0.00 0.00 3.86
515 541 2.709125 TACACTGTGCACCGCCTCAC 62.709 60.000 15.69 0.00 0.00 3.51
516 542 3.860605 ACTGTGCACCGCCTCACA 61.861 61.111 15.69 0.00 40.50 3.58
518 544 3.545574 TGTGCACCGCCTCACAGA 61.546 61.111 15.69 0.00 38.18 3.41
519 545 2.046892 GTGCACCGCCTCACAGAT 60.047 61.111 5.22 0.00 33.63 2.90
520 546 1.218047 GTGCACCGCCTCACAGATA 59.782 57.895 5.22 0.00 33.63 1.98
521 547 0.807667 GTGCACCGCCTCACAGATAG 60.808 60.000 5.22 0.00 33.63 2.08
522 548 1.227380 GCACCGCCTCACAGATAGG 60.227 63.158 0.00 0.00 37.17 2.57
528 554 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
529 555 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
530 556 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
532 558 0.595053 CACAGATAGGCGCTACACGG 60.595 60.000 7.64 0.58 43.93 4.94
533 559 1.035932 ACAGATAGGCGCTACACGGT 61.036 55.000 7.64 1.25 43.93 4.83
534 560 0.317938 CAGATAGGCGCTACACGGTC 60.318 60.000 7.64 0.00 43.93 4.79
535 561 0.750546 AGATAGGCGCTACACGGTCA 60.751 55.000 7.64 0.00 43.93 4.02
536 562 0.317938 GATAGGCGCTACACGGTCAG 60.318 60.000 7.64 0.00 43.93 3.51
537 563 2.351336 ATAGGCGCTACACGGTCAGC 62.351 60.000 7.64 1.95 43.93 4.26
541 567 2.874780 GCTACACGGTCAGCGTCG 60.875 66.667 0.00 0.00 0.00 5.12
542 568 2.874780 CTACACGGTCAGCGTCGC 60.875 66.667 9.80 9.80 0.00 5.19
543 569 3.604494 CTACACGGTCAGCGTCGCA 62.604 63.158 21.09 0.00 0.00 5.10
544 570 3.884581 TACACGGTCAGCGTCGCAC 62.885 63.158 21.09 9.66 0.00 5.34
556 582 2.261361 TCGCACCCGTGTGATCAG 59.739 61.111 0.90 0.00 45.76 2.90
557 583 2.261361 CGCACCCGTGTGATCAGA 59.739 61.111 0.90 0.00 45.76 3.27
558 584 1.374125 CGCACCCGTGTGATCAGAA 60.374 57.895 0.90 0.00 45.76 3.02
559 585 0.948623 CGCACCCGTGTGATCAGAAA 60.949 55.000 0.90 0.00 45.76 2.52
560 586 1.234821 GCACCCGTGTGATCAGAAAA 58.765 50.000 0.90 0.00 45.76 2.29
561 587 1.812571 GCACCCGTGTGATCAGAAAAT 59.187 47.619 0.90 0.00 45.76 1.82
562 588 2.228822 GCACCCGTGTGATCAGAAAATT 59.771 45.455 0.90 0.00 45.76 1.82
563 589 3.438781 GCACCCGTGTGATCAGAAAATTA 59.561 43.478 0.90 0.00 45.76 1.40
564 590 4.671766 GCACCCGTGTGATCAGAAAATTAC 60.672 45.833 0.90 0.00 45.76 1.89
565 591 4.695455 CACCCGTGTGATCAGAAAATTACT 59.305 41.667 0.00 0.00 45.76 2.24
566 592 5.872617 CACCCGTGTGATCAGAAAATTACTA 59.127 40.000 0.00 0.00 45.76 1.82
567 593 6.370442 CACCCGTGTGATCAGAAAATTACTAA 59.630 38.462 0.00 0.00 45.76 2.24
568 594 6.594159 ACCCGTGTGATCAGAAAATTACTAAG 59.406 38.462 0.00 0.00 0.00 2.18
569 595 6.594159 CCCGTGTGATCAGAAAATTACTAAGT 59.406 38.462 0.00 0.00 0.00 2.24
570 596 7.201530 CCCGTGTGATCAGAAAATTACTAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
571 597 7.330946 CCGTGTGATCAGAAAATTACTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
572 598 8.376203 CGTGTGATCAGAAAATTACTAAGTCAG 58.624 37.037 0.00 0.00 0.00 3.51
573 599 9.209175 GTGTGATCAGAAAATTACTAAGTCAGT 57.791 33.333 0.00 0.00 41.62 3.41
574 600 9.208022 TGTGATCAGAAAATTACTAAGTCAGTG 57.792 33.333 0.00 0.00 38.24 3.66
575 601 9.209175 GTGATCAGAAAATTACTAAGTCAGTGT 57.791 33.333 0.00 0.00 38.24 3.55
576 602 9.208022 TGATCAGAAAATTACTAAGTCAGTGTG 57.792 33.333 0.00 0.00 38.24 3.82
577 603 7.421530 TCAGAAAATTACTAAGTCAGTGTGC 57.578 36.000 0.00 0.00 38.24 4.57
578 604 6.989759 TCAGAAAATTACTAAGTCAGTGTGCA 59.010 34.615 0.00 0.00 38.24 4.57
579 605 7.171508 TCAGAAAATTACTAAGTCAGTGTGCAG 59.828 37.037 0.00 0.00 38.24 4.41
580 606 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
581 607 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
582 608 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
583 609 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
584 610 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
585 611 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
586 612 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
587 613 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
588 614 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
589 615 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
599 625 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
600 626 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
601 627 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
602 628 2.230994 CTGAGAGCTAGGCGCCACAA 62.231 60.000 31.54 12.89 40.39 3.33
603 629 1.144936 GAGAGCTAGGCGCCACAAT 59.855 57.895 31.54 12.06 40.39 2.71
604 630 0.389391 GAGAGCTAGGCGCCACAATA 59.611 55.000 31.54 11.42 40.39 1.90
605 631 1.001406 GAGAGCTAGGCGCCACAATAT 59.999 52.381 31.54 9.39 40.39 1.28
606 632 2.231478 GAGAGCTAGGCGCCACAATATA 59.769 50.000 31.54 10.17 40.39 0.86
607 633 2.028930 AGAGCTAGGCGCCACAATATAC 60.029 50.000 31.54 11.65 40.39 1.47
608 634 1.691976 AGCTAGGCGCCACAATATACA 59.308 47.619 31.54 0.33 40.39 2.29
609 635 2.069273 GCTAGGCGCCACAATATACAG 58.931 52.381 31.54 11.37 0.00 2.74
610 636 2.548067 GCTAGGCGCCACAATATACAGT 60.548 50.000 31.54 5.27 0.00 3.55
611 637 1.953559 AGGCGCCACAATATACAGTG 58.046 50.000 31.54 0.00 35.56 3.66
612 638 0.307760 GGCGCCACAATATACAGTGC 59.692 55.000 24.80 0.00 34.48 4.40
613 639 1.013596 GCGCCACAATATACAGTGCA 58.986 50.000 0.00 0.00 34.48 4.57
614 640 1.003545 GCGCCACAATATACAGTGCAG 60.004 52.381 0.00 0.00 34.48 4.41
615 641 1.003545 CGCCACAATATACAGTGCAGC 60.004 52.381 0.00 0.00 34.48 5.25
616 642 1.003545 GCCACAATATACAGTGCAGCG 60.004 52.381 0.00 0.00 34.48 5.18
617 643 1.003545 CCACAATATACAGTGCAGCGC 60.004 52.381 0.00 0.00 34.48 5.92
618 644 1.003545 CACAATATACAGTGCAGCGCC 60.004 52.381 2.29 0.00 0.00 6.53
619 645 1.134401 ACAATATACAGTGCAGCGCCT 60.134 47.619 2.29 0.00 0.00 5.52
620 646 2.102420 ACAATATACAGTGCAGCGCCTA 59.898 45.455 2.29 0.00 0.00 3.93
621 647 2.732412 ATATACAGTGCAGCGCCTAG 57.268 50.000 2.29 0.00 0.00 3.02
635 661 1.068250 CCTAGCTCCTAGGCGTTGC 59.932 63.158 2.96 5.87 45.64 4.17
636 662 1.676678 CCTAGCTCCTAGGCGTTGCA 61.677 60.000 2.96 0.00 45.64 4.08
637 663 0.528684 CTAGCTCCTAGGCGTTGCAC 60.529 60.000 2.96 0.00 37.29 4.57
638 664 0.970937 TAGCTCCTAGGCGTTGCACT 60.971 55.000 2.96 0.00 37.29 4.40
639 665 0.970937 AGCTCCTAGGCGTTGCACTA 60.971 55.000 2.96 0.00 37.29 2.74
640 666 0.108329 GCTCCTAGGCGTTGCACTAA 60.108 55.000 2.96 0.00 0.00 2.24
641 667 1.473434 GCTCCTAGGCGTTGCACTAAT 60.473 52.381 2.96 0.00 0.00 1.73
642 668 2.205074 CTCCTAGGCGTTGCACTAATG 58.795 52.381 2.96 0.00 0.00 1.90
662 688 3.151022 GCGCCTAGCTCCCTCTGT 61.151 66.667 0.00 0.00 44.04 3.41
663 689 1.828660 GCGCCTAGCTCCCTCTGTA 60.829 63.158 0.00 0.00 44.04 2.74
664 690 1.392710 GCGCCTAGCTCCCTCTGTAA 61.393 60.000 0.00 0.00 44.04 2.41
665 691 0.671251 CGCCTAGCTCCCTCTGTAAG 59.329 60.000 0.00 0.00 0.00 2.34
666 692 1.783071 GCCTAGCTCCCTCTGTAAGT 58.217 55.000 0.00 0.00 33.76 2.24
667 693 1.684450 GCCTAGCTCCCTCTGTAAGTC 59.316 57.143 0.00 0.00 33.76 3.01
668 694 2.950874 GCCTAGCTCCCTCTGTAAGTCA 60.951 54.545 0.00 0.00 33.76 3.41
669 695 3.366396 CCTAGCTCCCTCTGTAAGTCAA 58.634 50.000 0.00 0.00 33.76 3.18
670 696 3.769844 CCTAGCTCCCTCTGTAAGTCAAA 59.230 47.826 0.00 0.00 33.76 2.69
671 697 4.407296 CCTAGCTCCCTCTGTAAGTCAAAT 59.593 45.833 0.00 0.00 33.76 2.32
672 698 4.917906 AGCTCCCTCTGTAAGTCAAATT 57.082 40.909 0.00 0.00 33.76 1.82
673 699 5.248380 AGCTCCCTCTGTAAGTCAAATTT 57.752 39.130 0.00 0.00 33.76 1.82
674 700 5.006386 AGCTCCCTCTGTAAGTCAAATTTG 58.994 41.667 12.15 12.15 33.76 2.32
675 701 4.762251 GCTCCCTCTGTAAGTCAAATTTGT 59.238 41.667 17.47 1.67 33.76 2.83
676 702 5.106515 GCTCCCTCTGTAAGTCAAATTTGTC 60.107 44.000 17.47 12.30 33.76 3.18
677 703 5.935945 TCCCTCTGTAAGTCAAATTTGTCA 58.064 37.500 17.47 9.39 33.76 3.58
678 704 6.361433 TCCCTCTGTAAGTCAAATTTGTCAA 58.639 36.000 17.47 2.71 33.76 3.18
679 705 6.831353 TCCCTCTGTAAGTCAAATTTGTCAAA 59.169 34.615 17.47 0.00 33.76 2.69
680 706 7.505585 TCCCTCTGTAAGTCAAATTTGTCAAAT 59.494 33.333 17.47 4.91 33.76 2.32
681 707 8.143835 CCCTCTGTAAGTCAAATTTGTCAAATT 58.856 33.333 16.26 16.26 37.74 1.82
682 708 9.533253 CCTCTGTAAGTCAAATTTGTCAAATTT 57.467 29.630 24.35 24.35 42.40 1.82
688 714 3.894782 AAATTTGTCAAATTTGCCGCC 57.105 38.095 27.61 2.23 46.30 6.13
689 715 2.540265 ATTTGTCAAATTTGCCGCCA 57.460 40.000 13.54 4.71 0.00 5.69
690 716 1.576356 TTTGTCAAATTTGCCGCCAC 58.424 45.000 13.54 6.65 0.00 5.01
691 717 0.249657 TTGTCAAATTTGCCGCCACC 60.250 50.000 13.54 0.00 0.00 4.61
692 718 1.365633 GTCAAATTTGCCGCCACCA 59.634 52.632 13.54 0.00 0.00 4.17
693 719 0.943835 GTCAAATTTGCCGCCACCAC 60.944 55.000 13.54 0.18 0.00 4.16
694 720 1.667510 CAAATTTGCCGCCACCACC 60.668 57.895 5.01 0.00 0.00 4.61
695 721 1.836604 AAATTTGCCGCCACCACCT 60.837 52.632 0.00 0.00 0.00 4.00
696 722 1.406860 AAATTTGCCGCCACCACCTT 61.407 50.000 0.00 0.00 0.00 3.50
697 723 1.815817 AATTTGCCGCCACCACCTTC 61.816 55.000 0.00 0.00 0.00 3.46
698 724 4.966787 TTGCCGCCACCACCTTCC 62.967 66.667 0.00 0.00 0.00 3.46
703 729 4.717313 GCCACCACCTTCCCCGTC 62.717 72.222 0.00 0.00 0.00 4.79
704 730 4.388499 CCACCACCTTCCCCGTCG 62.388 72.222 0.00 0.00 0.00 5.12
705 731 3.307906 CACCACCTTCCCCGTCGA 61.308 66.667 0.00 0.00 0.00 4.20
706 732 2.284405 ACCACCTTCCCCGTCGAT 60.284 61.111 0.00 0.00 0.00 3.59
707 733 2.356780 ACCACCTTCCCCGTCGATC 61.357 63.158 0.00 0.00 0.00 3.69
708 734 2.355986 CCACCTTCCCCGTCGATCA 61.356 63.158 0.00 0.00 0.00 2.92
709 735 1.153628 CACCTTCCCCGTCGATCAC 60.154 63.158 0.00 0.00 0.00 3.06
721 747 1.138459 CGATCACACGAGCAGCTCT 59.862 57.895 20.39 4.77 35.09 4.09
722 748 0.865218 CGATCACACGAGCAGCTCTC 60.865 60.000 20.39 8.75 38.47 3.20
723 749 0.527385 GATCACACGAGCAGCTCTCC 60.527 60.000 20.39 0.00 38.62 3.71
724 750 1.253593 ATCACACGAGCAGCTCTCCA 61.254 55.000 20.39 0.17 38.62 3.86
725 751 1.445754 CACACGAGCAGCTCTCCAG 60.446 63.158 20.39 7.15 38.62 3.86
740 766 0.609957 TCCAGTCAAGCATGGCCAAG 60.610 55.000 10.96 6.55 36.47 3.61
815 845 0.831288 TAAGGTTTCCCGTCCCGTCA 60.831 55.000 0.00 0.00 35.12 4.35
816 846 2.047560 GGTTTCCCGTCCCGTCAG 60.048 66.667 0.00 0.00 0.00 3.51
824 854 4.736896 GTCCCGTCAGCCGTCACC 62.737 72.222 0.00 0.00 33.66 4.02
828 858 4.436998 CGTCAGCCGTCACCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
842 872 3.430497 CTCCCTCCCTCTCCCGGA 61.430 72.222 0.73 0.00 0.00 5.14
890 920 2.203788 ACTCACTCCCGGCCAAGA 60.204 61.111 2.24 0.00 0.00 3.02
916 946 1.068921 CACCCAAACCCCAAAAGCG 59.931 57.895 0.00 0.00 0.00 4.68
959 991 4.757355 CAGGAAATGCCCGCCCCA 62.757 66.667 0.00 0.00 37.37 4.96
985 1017 2.361230 GCTACAAAAGCCGCCCCT 60.361 61.111 0.00 0.00 46.25 4.79
1119 1158 1.690985 CCCCTCCTCCAAGTCCCTC 60.691 68.421 0.00 0.00 0.00 4.30
1186 1225 4.787280 AGCCGGAGAGGAGGTGGG 62.787 72.222 5.05 0.00 45.00 4.61
1189 1228 3.775654 CGGAGAGGAGGTGGGCAC 61.776 72.222 0.00 0.00 0.00 5.01
1190 1229 2.607750 GGAGAGGAGGTGGGCACA 60.608 66.667 0.00 0.00 0.00 4.57
1191 1230 2.664081 GGAGAGGAGGTGGGCACAG 61.664 68.421 0.00 0.00 0.00 3.66
1192 1231 3.322318 GAGAGGAGGTGGGCACAGC 62.322 68.421 10.99 10.99 45.24 4.40
1356 1395 2.514824 GGCTCGGGTTCTGATGCC 60.515 66.667 0.00 0.00 0.00 4.40
1371 1410 3.554934 TGATGCCATGATACCAAACTCC 58.445 45.455 0.00 0.00 0.00 3.85
1374 1413 0.937304 CCATGATACCAAACTCCGCG 59.063 55.000 0.00 0.00 0.00 6.46
1449 1488 1.507141 CGCCGTCCAAAGAAGCTGTT 61.507 55.000 0.00 0.00 0.00 3.16
1518 1557 0.984995 AGGCCAAGTCTGTTAGGACC 59.015 55.000 5.01 0.00 36.95 4.46
1521 1560 1.339151 GCCAAGTCTGTTAGGACCAGG 60.339 57.143 0.00 0.00 36.95 4.45
1548 1587 0.872021 CTATGGCGAGCTCGTCCAAC 60.872 60.000 37.59 23.44 44.42 3.77
1560 1599 2.014857 TCGTCCAACTCATCCTACTCG 58.985 52.381 0.00 0.00 0.00 4.18
1618 1657 1.381327 TCCTCGGAGATCACACCCC 60.381 63.158 6.58 0.00 33.89 4.95
1659 1698 4.785453 CCAGTCAAGGAGGCGGCC 62.785 72.222 12.11 12.11 0.00 6.13
2193 2244 4.003788 CAGTCCAAGGTCGCCCGT 62.004 66.667 0.00 0.00 35.12 5.28
2363 2414 2.060383 TGTCCGGCATCCTCCTCTG 61.060 63.158 0.00 0.00 0.00 3.35
2377 2428 4.988716 TCTGCCCCCACGACGACT 62.989 66.667 0.00 0.00 0.00 4.18
2739 2790 1.667154 CCGAGTTCTGAGCCGATCCA 61.667 60.000 4.52 0.00 0.00 3.41
2740 2791 0.526524 CGAGTTCTGAGCCGATCCAC 60.527 60.000 0.00 0.00 0.00 4.02
2762 2821 4.082463 ACCGCCACCATTGTATGTAAAAAG 60.082 41.667 0.00 0.00 0.00 2.27
2796 2855 2.669434 TCAATTAGCGTTAGACGTTGGC 59.331 45.455 2.27 0.00 44.73 4.52
2814 2885 0.811616 GCGCCACGAGAGGATGAATT 60.812 55.000 0.00 0.00 0.00 2.17
2832 2903 2.561478 TTCCCTCCTTCGTTTTGGAG 57.439 50.000 0.00 0.00 46.91 3.86
2900 2975 3.326210 CGAATGCTCCGAGCTCGC 61.326 66.667 30.49 17.41 42.97 5.03
3134 3226 6.807789 TGTTTCCACCTGTAAATAAAACCAC 58.192 36.000 0.00 0.00 0.00 4.16
3135 3227 6.183360 TGTTTCCACCTGTAAATAAAACCACC 60.183 38.462 0.00 0.00 0.00 4.61
3136 3228 5.327737 TCCACCTGTAAATAAAACCACCT 57.672 39.130 0.00 0.00 0.00 4.00
3137 3229 5.707495 TCCACCTGTAAATAAAACCACCTT 58.293 37.500 0.00 0.00 0.00 3.50
3182 3281 1.137282 TGCTTCGTTGGCCGATGTATA 59.863 47.619 12.17 0.00 46.75 1.47
3187 3286 1.067974 CGTTGGCCGATGTATACTGGA 59.932 52.381 3.73 0.00 39.56 3.86
3260 3402 2.213499 CAGTAGGACCAATCAATCCGC 58.787 52.381 0.00 0.00 40.20 5.54
3261 3403 1.141053 AGTAGGACCAATCAATCCGCC 59.859 52.381 0.00 0.00 40.20 6.13
3340 3482 0.547471 TGAGCATGGACTCCTCCCAA 60.547 55.000 0.00 0.00 37.22 4.12
3391 3544 5.407049 TGAACCCCTCCCATTTTAAAATGA 58.593 37.500 32.84 18.36 46.72 2.57
3421 3574 1.608717 GACTGACTGACGGAGGCCAT 61.609 60.000 5.01 0.00 0.00 4.40
3422 3575 1.153489 CTGACTGACGGAGGCCATG 60.153 63.158 5.01 0.00 0.00 3.66
3423 3576 2.512515 GACTGACGGAGGCCATGC 60.513 66.667 5.01 0.00 0.00 4.06
3486 3650 3.838903 GTCTCTCTACCTTTCCTTTCCCA 59.161 47.826 0.00 0.00 0.00 4.37
3536 3701 1.683943 CATTGCGTGATTCCTCCCAT 58.316 50.000 0.00 0.00 0.00 4.00
3537 3702 1.605710 CATTGCGTGATTCCTCCCATC 59.394 52.381 0.00 0.00 0.00 3.51
3538 3703 0.107214 TTGCGTGATTCCTCCCATCC 60.107 55.000 0.00 0.00 0.00 3.51
3539 3704 1.227973 GCGTGATTCCTCCCATCCC 60.228 63.158 0.00 0.00 0.00 3.85
3540 3705 1.983119 GCGTGATTCCTCCCATCCCA 61.983 60.000 0.00 0.00 0.00 4.37
3553 3718 1.617804 CCATCCCAGATGTTGTTGCCT 60.618 52.381 4.04 0.00 0.00 4.75
3639 3804 1.800586 CACGCATTCCTCCGGATTATG 59.199 52.381 3.57 10.29 0.00 1.90
3645 3810 1.924731 TCCTCCGGATTATGCTCGAT 58.075 50.000 3.57 0.00 0.00 3.59
3664 3829 7.714813 TGCTCGATCTTAATCAACATCCATTTA 59.285 33.333 0.00 0.00 31.76 1.40
3742 3913 1.863267 TGGACAAATTTTGCAAGGCG 58.137 45.000 9.04 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179140 CGCAAAGGTTTGTGTGCACT 60.179 50.000 19.41 0.00 42.17 4.40
1 2 1.145162 CCGCAAAGGTTTGTGTGCAC 61.145 55.000 10.75 10.75 44.80 4.57
2 3 1.140589 CCGCAAAGGTTTGTGTGCA 59.859 52.632 13.47 0.00 44.80 4.57
3 4 1.591327 CCCGCAAAGGTTTGTGTGC 60.591 57.895 13.47 0.00 44.80 4.57
4 5 0.030638 CTCCCGCAAAGGTTTGTGTG 59.969 55.000 13.47 4.10 44.80 3.82
5 6 0.395173 ACTCCCGCAAAGGTTTGTGT 60.395 50.000 13.47 0.00 44.80 3.72
6 7 0.744281 AACTCCCGCAAAGGTTTGTG 59.256 50.000 8.71 8.71 45.59 3.33
7 8 1.136110 CAAACTCCCGCAAAGGTTTGT 59.864 47.619 4.45 0.00 41.71 2.83
8 9 1.537990 CCAAACTCCCGCAAAGGTTTG 60.538 52.381 12.39 12.39 44.37 2.93
9 10 0.750249 CCAAACTCCCGCAAAGGTTT 59.250 50.000 0.00 0.00 38.74 3.27
10 11 0.106419 TCCAAACTCCCGCAAAGGTT 60.106 50.000 0.00 0.00 38.74 3.50
11 12 0.822121 GTCCAAACTCCCGCAAAGGT 60.822 55.000 0.00 0.00 38.74 3.50
12 13 1.852067 CGTCCAAACTCCCGCAAAGG 61.852 60.000 0.00 0.00 40.63 3.11
13 14 1.164041 ACGTCCAAACTCCCGCAAAG 61.164 55.000 0.00 0.00 0.00 2.77
14 15 1.153127 ACGTCCAAACTCCCGCAAA 60.153 52.632 0.00 0.00 0.00 3.68
15 16 1.890041 CACGTCCAAACTCCCGCAA 60.890 57.895 0.00 0.00 0.00 4.85
16 17 2.280524 CACGTCCAAACTCCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
17 18 3.723348 GCACGTCCAAACTCCCGC 61.723 66.667 0.00 0.00 0.00 6.13
18 19 3.411351 CGCACGTCCAAACTCCCG 61.411 66.667 0.00 0.00 0.00 5.14
47 48 1.283613 AAACGGCGCATCGAACGTTA 61.284 50.000 17.74 0.00 45.26 3.18
48 49 2.600475 AAACGGCGCATCGAACGTT 61.600 52.632 10.83 12.12 46.80 3.99
54 55 2.053984 CGATCAAACGGCGCATCG 60.054 61.111 10.83 10.65 32.83 3.84
88 91 1.985684 GCATCAAAACGCAGCTAAACC 59.014 47.619 0.00 0.00 0.00 3.27
113 116 2.854805 GCAAACTTTCTCAAGGCACGAC 60.855 50.000 0.00 0.00 33.82 4.34
115 118 1.065401 TGCAAACTTTCTCAAGGCACG 59.935 47.619 0.00 0.00 33.82 5.34
117 120 3.883830 TTTGCAAACTTTCTCAAGGCA 57.116 38.095 8.05 0.00 33.82 4.75
138 141 1.813102 TGCCCCCTCCAACAATTTTT 58.187 45.000 0.00 0.00 0.00 1.94
139 142 1.813102 TTGCCCCCTCCAACAATTTT 58.187 45.000 0.00 0.00 0.00 1.82
140 143 1.813102 TTTGCCCCCTCCAACAATTT 58.187 45.000 0.00 0.00 0.00 1.82
141 144 2.043307 ATTTGCCCCCTCCAACAATT 57.957 45.000 0.00 0.00 0.00 2.32
142 145 2.938428 TATTTGCCCCCTCCAACAAT 57.062 45.000 0.00 0.00 0.00 2.71
144 147 1.360852 ACATATTTGCCCCCTCCAACA 59.639 47.619 0.00 0.00 0.00 3.33
145 148 2.159179 ACATATTTGCCCCCTCCAAC 57.841 50.000 0.00 0.00 0.00 3.77
149 152 2.831526 ACAACAACATATTTGCCCCCTC 59.168 45.455 0.00 0.00 0.00 4.30
150 153 2.901291 ACAACAACATATTTGCCCCCT 58.099 42.857 0.00 0.00 0.00 4.79
152 155 4.001618 ACAACAACAACATATTTGCCCC 57.998 40.909 0.00 0.00 0.00 5.80
153 156 4.213059 CCAACAACAACAACATATTTGCCC 59.787 41.667 0.00 0.00 0.00 5.36
155 158 5.982465 ACCAACAACAACAACATATTTGC 57.018 34.783 0.00 0.00 0.00 3.68
156 159 9.092876 ACTTAACCAACAACAACAACATATTTG 57.907 29.630 0.00 0.00 0.00 2.32
158 161 9.660180 AAACTTAACCAACAACAACAACATATT 57.340 25.926 0.00 0.00 0.00 1.28
159 162 9.092876 CAAACTTAACCAACAACAACAACATAT 57.907 29.630 0.00 0.00 0.00 1.78
161 164 6.128418 GCAAACTTAACCAACAACAACAACAT 60.128 34.615 0.00 0.00 0.00 2.71
163 166 5.390040 GGCAAACTTAACCAACAACAACAAC 60.390 40.000 0.00 0.00 0.00 3.32
187 190 4.999950 ACTGTGCTTACATTCTTTCCAGAG 59.000 41.667 0.00 0.00 0.00 3.35
189 192 5.695851 AACTGTGCTTACATTCTTTCCAG 57.304 39.130 0.00 0.00 0.00 3.86
195 198 3.821033 GGTCCAAACTGTGCTTACATTCT 59.179 43.478 0.00 0.00 0.00 2.40
199 202 2.719531 TGGTCCAAACTGTGCTTACA 57.280 45.000 0.00 0.00 0.00 2.41
200 203 2.949644 ACTTGGTCCAAACTGTGCTTAC 59.050 45.455 5.64 0.00 0.00 2.34
213 216 4.439837 GGAAGAGTGTCGTATACTTGGTCC 60.440 50.000 0.56 0.00 0.00 4.46
221 224 6.630444 GGATACTTGGAAGAGTGTCGTATA 57.370 41.667 0.00 0.00 38.30 1.47
222 225 5.517322 GGATACTTGGAAGAGTGTCGTAT 57.483 43.478 0.00 0.00 38.30 3.06
242 245 1.518367 AGGAAGTCAAACACCCAGGA 58.482 50.000 0.00 0.00 0.00 3.86
243 246 1.956477 CAAGGAAGTCAAACACCCAGG 59.044 52.381 0.00 0.00 0.00 4.45
244 247 1.956477 CCAAGGAAGTCAAACACCCAG 59.044 52.381 0.00 0.00 0.00 4.45
245 248 1.566703 TCCAAGGAAGTCAAACACCCA 59.433 47.619 0.00 0.00 0.00 4.51
246 249 2.230660 CTCCAAGGAAGTCAAACACCC 58.769 52.381 0.00 0.00 0.00 4.61
247 250 1.609072 GCTCCAAGGAAGTCAAACACC 59.391 52.381 0.00 0.00 0.00 4.16
248 251 2.291741 CTGCTCCAAGGAAGTCAAACAC 59.708 50.000 0.00 0.00 0.00 3.32
249 252 2.092429 ACTGCTCCAAGGAAGTCAAACA 60.092 45.455 0.00 0.00 0.00 2.83
250 253 2.576615 ACTGCTCCAAGGAAGTCAAAC 58.423 47.619 0.00 0.00 0.00 2.93
263 273 2.485814 GTGTCATCTTTCCAACTGCTCC 59.514 50.000 0.00 0.00 0.00 4.70
283 293 1.658673 GACTCCACTCGTTGACGGT 59.341 57.895 3.48 0.00 40.29 4.83
286 296 0.309922 TGACGACTCCACTCGTTGAC 59.690 55.000 0.00 0.00 46.80 3.18
289 299 1.535833 ATCTGACGACTCCACTCGTT 58.464 50.000 0.00 0.00 46.80 3.85
299 309 1.135373 TGAGCTCGGAAATCTGACGAC 60.135 52.381 9.64 0.00 32.66 4.34
380 406 2.231215 TTTGTCAAATTTGCCGGTGG 57.769 45.000 13.54 0.00 0.00 4.61
401 427 9.430623 TGTGATTTGATTTCGTCTATAAGTCAA 57.569 29.630 0.00 0.00 32.69 3.18
402 428 8.996024 TGTGATTTGATTTCGTCTATAAGTCA 57.004 30.769 0.00 0.00 0.00 3.41
403 429 9.302345 TCTGTGATTTGATTTCGTCTATAAGTC 57.698 33.333 0.00 0.00 0.00 3.01
404 430 9.653287 TTCTGTGATTTGATTTCGTCTATAAGT 57.347 29.630 0.00 0.00 0.00 2.24
405 431 9.907576 GTTCTGTGATTTGATTTCGTCTATAAG 57.092 33.333 0.00 0.00 0.00 1.73
406 432 8.592155 CGTTCTGTGATTTGATTTCGTCTATAA 58.408 33.333 0.00 0.00 0.00 0.98
407 433 7.971722 TCGTTCTGTGATTTGATTTCGTCTATA 59.028 33.333 0.00 0.00 0.00 1.31
408 434 6.811665 TCGTTCTGTGATTTGATTTCGTCTAT 59.188 34.615 0.00 0.00 0.00 1.98
409 435 6.153756 TCGTTCTGTGATTTGATTTCGTCTA 58.846 36.000 0.00 0.00 0.00 2.59
410 436 4.988540 TCGTTCTGTGATTTGATTTCGTCT 59.011 37.500 0.00 0.00 0.00 4.18
411 437 5.264060 TCGTTCTGTGATTTGATTTCGTC 57.736 39.130 0.00 0.00 0.00 4.20
412 438 5.236478 AGTTCGTTCTGTGATTTGATTTCGT 59.764 36.000 0.00 0.00 0.00 3.85
413 439 5.561499 CAGTTCGTTCTGTGATTTGATTTCG 59.439 40.000 2.48 0.00 0.00 3.46
414 440 6.430451 ACAGTTCGTTCTGTGATTTGATTTC 58.570 36.000 12.61 0.00 45.40 2.17
415 441 6.377327 ACAGTTCGTTCTGTGATTTGATTT 57.623 33.333 12.61 0.00 45.40 2.17
426 452 6.943981 TGAAATAGTTTCACAGTTCGTTCTG 58.056 36.000 1.24 7.74 44.21 3.02
438 464 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
439 465 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
440 466 1.803334 TCAGCCGCGTGAAATAGTTT 58.197 45.000 4.92 0.00 0.00 2.66
441 467 1.933853 GATCAGCCGCGTGAAATAGTT 59.066 47.619 4.92 0.00 0.00 2.24
442 468 1.137086 AGATCAGCCGCGTGAAATAGT 59.863 47.619 4.92 0.00 0.00 2.12
443 469 1.858091 AGATCAGCCGCGTGAAATAG 58.142 50.000 4.92 0.00 0.00 1.73
444 470 2.309528 AAGATCAGCCGCGTGAAATA 57.690 45.000 4.92 0.00 0.00 1.40
445 471 1.453155 AAAGATCAGCCGCGTGAAAT 58.547 45.000 4.92 0.00 0.00 2.17
446 472 1.234821 AAAAGATCAGCCGCGTGAAA 58.765 45.000 4.92 0.00 0.00 2.69
447 473 1.069296 CAAAAAGATCAGCCGCGTGAA 60.069 47.619 4.92 0.00 0.00 3.18
448 474 0.516877 CAAAAAGATCAGCCGCGTGA 59.483 50.000 4.92 3.05 0.00 4.35
449 475 0.238289 ACAAAAAGATCAGCCGCGTG 59.762 50.000 4.92 0.00 0.00 5.34
450 476 0.238289 CACAAAAAGATCAGCCGCGT 59.762 50.000 4.92 0.00 0.00 6.01
451 477 0.238289 ACACAAAAAGATCAGCCGCG 59.762 50.000 0.00 0.00 0.00 6.46
452 478 1.266718 TCACACAAAAAGATCAGCCGC 59.733 47.619 0.00 0.00 0.00 6.53
453 479 2.662791 CGTCACACAAAAAGATCAGCCG 60.663 50.000 0.00 0.00 0.00 5.52
454 480 2.918131 GCGTCACACAAAAAGATCAGCC 60.918 50.000 0.00 0.00 0.00 4.85
455 481 2.310577 GCGTCACACAAAAAGATCAGC 58.689 47.619 0.00 0.00 0.00 4.26
456 482 2.350772 GGGCGTCACACAAAAAGATCAG 60.351 50.000 0.00 0.00 0.00 2.90
457 483 1.606668 GGGCGTCACACAAAAAGATCA 59.393 47.619 0.00 0.00 0.00 2.92
458 484 1.606668 TGGGCGTCACACAAAAAGATC 59.393 47.619 0.00 0.00 0.00 2.75
459 485 1.686355 TGGGCGTCACACAAAAAGAT 58.314 45.000 0.00 0.00 0.00 2.40
460 486 1.133407 GTTGGGCGTCACACAAAAAGA 59.867 47.619 0.00 0.00 0.00 2.52
461 487 1.134175 AGTTGGGCGTCACACAAAAAG 59.866 47.619 0.00 0.00 0.00 2.27
462 488 1.133407 GAGTTGGGCGTCACACAAAAA 59.867 47.619 0.00 0.00 0.00 1.94
463 489 0.736053 GAGTTGGGCGTCACACAAAA 59.264 50.000 0.00 0.00 0.00 2.44
464 490 1.433053 CGAGTTGGGCGTCACACAAA 61.433 55.000 0.00 0.00 0.00 2.83
465 491 1.885388 CGAGTTGGGCGTCACACAA 60.885 57.895 0.00 0.00 0.00 3.33
466 492 2.279851 CGAGTTGGGCGTCACACA 60.280 61.111 0.00 0.00 0.00 3.72
467 493 1.557443 CTTCGAGTTGGGCGTCACAC 61.557 60.000 0.00 0.00 0.00 3.82
468 494 1.300620 CTTCGAGTTGGGCGTCACA 60.301 57.895 0.00 0.00 0.00 3.58
469 495 2.027625 CCTTCGAGTTGGGCGTCAC 61.028 63.158 0.00 0.00 0.00 3.67
470 496 2.342279 CCTTCGAGTTGGGCGTCA 59.658 61.111 0.00 0.00 0.00 4.35
471 497 3.119096 GCCTTCGAGTTGGGCGTC 61.119 66.667 5.35 0.00 36.37 5.19
475 501 4.697756 TGGCGCCTTCGAGTTGGG 62.698 66.667 29.70 0.00 38.10 4.12
476 502 3.423154 GTGGCGCCTTCGAGTTGG 61.423 66.667 29.70 0.00 38.10 3.77
477 503 2.664851 TGTGGCGCCTTCGAGTTG 60.665 61.111 29.70 0.00 38.10 3.16
478 504 1.812686 TAGTGTGGCGCCTTCGAGTT 61.813 55.000 29.70 9.15 38.10 3.01
479 505 2.273179 TAGTGTGGCGCCTTCGAGT 61.273 57.895 29.70 13.41 38.10 4.18
480 506 1.805945 GTAGTGTGGCGCCTTCGAG 60.806 63.158 29.70 0.00 38.10 4.04
481 507 2.260434 GTAGTGTGGCGCCTTCGA 59.740 61.111 29.70 11.15 38.10 3.71
482 508 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
483 509 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
484 510 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
485 511 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
486 512 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
487 513 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
488 514 1.594021 TGCACAGTGTAGTGTGGCG 60.594 57.895 18.52 0.00 46.73 5.69
489 515 1.507141 GGTGCACAGTGTAGTGTGGC 61.507 60.000 20.43 12.34 46.73 5.01
490 516 1.221466 CGGTGCACAGTGTAGTGTGG 61.221 60.000 20.43 1.81 46.73 4.17
492 518 1.594293 GCGGTGCACAGTGTAGTGT 60.594 57.895 20.43 0.00 41.52 3.55
493 519 2.317609 GGCGGTGCACAGTGTAGTG 61.318 63.158 20.43 0.00 42.37 2.74
494 520 2.030562 GGCGGTGCACAGTGTAGT 59.969 61.111 20.43 0.00 0.00 2.73
495 521 1.738099 GAGGCGGTGCACAGTGTAG 60.738 63.158 20.43 3.39 0.00 2.74
496 522 2.342279 GAGGCGGTGCACAGTGTA 59.658 61.111 20.43 0.00 0.00 2.90
497 523 3.860605 TGAGGCGGTGCACAGTGT 61.861 61.111 20.43 6.04 0.00 3.55
498 524 3.349006 GTGAGGCGGTGCACAGTG 61.349 66.667 20.43 8.91 35.19 3.66
499 525 3.860605 TGTGAGGCGGTGCACAGT 61.861 61.111 20.43 0.00 39.86 3.55
501 527 1.540435 TATCTGTGAGGCGGTGCACA 61.540 55.000 20.43 0.00 42.25 4.57
502 528 0.807667 CTATCTGTGAGGCGGTGCAC 60.808 60.000 8.80 8.80 35.63 4.57
503 529 1.517361 CTATCTGTGAGGCGGTGCA 59.483 57.895 0.00 0.00 0.00 4.57
504 530 1.227380 CCTATCTGTGAGGCGGTGC 60.227 63.158 0.00 0.00 0.00 5.01
510 536 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
511 537 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
512 538 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
513 539 0.595053 CCGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 39.71 3.66
514 540 1.035932 ACCGTGTAGCGCCTATCTGT 61.036 55.000 2.29 0.00 39.71 3.41
515 541 0.317938 GACCGTGTAGCGCCTATCTG 60.318 60.000 2.29 0.00 39.71 2.90
516 542 0.750546 TGACCGTGTAGCGCCTATCT 60.751 55.000 2.29 0.00 39.71 1.98
517 543 0.317938 CTGACCGTGTAGCGCCTATC 60.318 60.000 2.29 0.00 39.71 2.08
518 544 1.734137 CTGACCGTGTAGCGCCTAT 59.266 57.895 2.29 0.00 39.71 2.57
519 545 3.060020 GCTGACCGTGTAGCGCCTA 62.060 63.158 2.29 0.00 39.71 3.93
520 546 4.436998 GCTGACCGTGTAGCGCCT 62.437 66.667 2.29 0.00 39.71 5.52
537 563 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
538 564 2.048597 TGATCACACGGGTGCGAC 60.049 61.111 14.50 7.33 44.87 5.19
539 565 1.811645 TTCTGATCACACGGGTGCGA 61.812 55.000 14.50 3.83 44.87 5.10
540 566 0.948623 TTTCTGATCACACGGGTGCG 60.949 55.000 14.50 1.20 44.87 5.34
541 567 1.234821 TTTTCTGATCACACGGGTGC 58.765 50.000 14.50 0.00 44.87 5.01
542 568 4.695455 AGTAATTTTCTGATCACACGGGTG 59.305 41.667 12.84 12.84 46.66 4.61
543 569 4.906618 AGTAATTTTCTGATCACACGGGT 58.093 39.130 0.00 0.00 0.00 5.28
544 570 6.594159 ACTTAGTAATTTTCTGATCACACGGG 59.406 38.462 0.00 0.00 0.00 5.28
545 571 7.330946 TGACTTAGTAATTTTCTGATCACACGG 59.669 37.037 0.00 0.00 0.00 4.94
546 572 8.239681 TGACTTAGTAATTTTCTGATCACACG 57.760 34.615 0.00 0.00 0.00 4.49
547 573 9.209175 ACTGACTTAGTAATTTTCTGATCACAC 57.791 33.333 0.00 0.00 38.04 3.82
548 574 9.208022 CACTGACTTAGTAATTTTCTGATCACA 57.792 33.333 0.00 0.00 37.60 3.58
549 575 9.209175 ACACTGACTTAGTAATTTTCTGATCAC 57.791 33.333 0.00 0.00 37.60 3.06
550 576 9.208022 CACACTGACTTAGTAATTTTCTGATCA 57.792 33.333 0.00 0.00 37.60 2.92
551 577 8.171840 GCACACTGACTTAGTAATTTTCTGATC 58.828 37.037 0.00 0.00 37.60 2.92
552 578 7.661437 TGCACACTGACTTAGTAATTTTCTGAT 59.339 33.333 0.00 0.00 37.60 2.90
553 579 6.989759 TGCACACTGACTTAGTAATTTTCTGA 59.010 34.615 0.00 0.00 37.60 3.27
554 580 7.189693 TGCACACTGACTTAGTAATTTTCTG 57.810 36.000 0.00 0.00 37.60 3.02
555 581 6.073003 GCTGCACACTGACTTAGTAATTTTCT 60.073 38.462 0.00 0.00 37.60 2.52
556 582 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
557 583 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
558 584 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
559 585 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
560 586 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
561 587 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
562 588 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
563 589 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
564 590 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
565 591 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
566 592 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
567 593 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
568 594 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
569 595 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
570 596 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
571 597 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
572 598 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
574 600 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
575 601 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
576 602 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
577 603 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
590 616 3.059884 CACTGTATATTGTGGCGCCTAG 58.940 50.000 29.70 13.13 0.00 3.02
591 617 2.805295 GCACTGTATATTGTGGCGCCTA 60.805 50.000 29.70 14.39 34.99 3.93
592 618 1.953559 CACTGTATATTGTGGCGCCT 58.046 50.000 29.70 9.99 0.00 5.52
593 619 0.307760 GCACTGTATATTGTGGCGCC 59.692 55.000 22.73 22.73 34.99 6.53
594 620 1.003545 CTGCACTGTATATTGTGGCGC 60.004 52.381 0.00 0.00 34.99 6.53
595 621 1.003545 GCTGCACTGTATATTGTGGCG 60.004 52.381 0.00 0.00 34.99 5.69
596 622 1.003545 CGCTGCACTGTATATTGTGGC 60.004 52.381 0.00 5.33 34.99 5.01
597 623 1.003545 GCGCTGCACTGTATATTGTGG 60.004 52.381 0.00 0.00 34.99 4.17
598 624 1.003545 GGCGCTGCACTGTATATTGTG 60.004 52.381 7.64 4.36 37.26 3.33
599 625 1.134401 AGGCGCTGCACTGTATATTGT 60.134 47.619 7.64 0.00 0.00 2.71
600 626 1.586422 AGGCGCTGCACTGTATATTG 58.414 50.000 7.64 0.00 0.00 1.90
601 627 2.868044 GCTAGGCGCTGCACTGTATATT 60.868 50.000 7.64 0.00 35.14 1.28
602 628 1.337260 GCTAGGCGCTGCACTGTATAT 60.337 52.381 7.64 0.00 35.14 0.86
603 629 0.032130 GCTAGGCGCTGCACTGTATA 59.968 55.000 7.64 0.00 35.14 1.47
604 630 1.227380 GCTAGGCGCTGCACTGTAT 60.227 57.895 7.64 0.00 35.14 2.29
605 631 2.184322 GCTAGGCGCTGCACTGTA 59.816 61.111 7.64 0.00 35.14 2.74
618 644 0.528684 GTGCAACGCCTAGGAGCTAG 60.529 60.000 14.75 3.92 34.16 3.42
619 645 0.970937 AGTGCAACGCCTAGGAGCTA 60.971 55.000 14.75 0.00 45.86 3.32
620 646 0.970937 TAGTGCAACGCCTAGGAGCT 60.971 55.000 14.75 3.79 45.86 4.09
621 647 0.108329 TTAGTGCAACGCCTAGGAGC 60.108 55.000 14.75 10.85 45.86 4.70
622 648 2.205074 CATTAGTGCAACGCCTAGGAG 58.795 52.381 14.75 12.99 45.86 3.69
623 649 2.309528 CATTAGTGCAACGCCTAGGA 57.690 50.000 14.75 0.00 45.86 2.94
635 661 1.937391 GCTAGGCGCTGCATTAGTG 59.063 57.895 7.64 0.00 39.95 2.74
636 662 4.445699 GCTAGGCGCTGCATTAGT 57.554 55.556 7.64 0.00 35.14 2.24
645 671 1.392710 TTACAGAGGGAGCTAGGCGC 61.393 60.000 0.00 0.00 39.57 6.53
646 672 0.671251 CTTACAGAGGGAGCTAGGCG 59.329 60.000 0.00 0.00 0.00 5.52
647 673 1.684450 GACTTACAGAGGGAGCTAGGC 59.316 57.143 0.00 0.00 0.00 3.93
648 674 3.019799 TGACTTACAGAGGGAGCTAGG 57.980 52.381 0.00 0.00 0.00 3.02
649 675 5.606348 ATTTGACTTACAGAGGGAGCTAG 57.394 43.478 0.00 0.00 0.00 3.42
650 676 6.173339 CAAATTTGACTTACAGAGGGAGCTA 58.827 40.000 13.08 0.00 0.00 3.32
651 677 4.917906 AATTTGACTTACAGAGGGAGCT 57.082 40.909 0.00 0.00 0.00 4.09
652 678 4.762251 ACAAATTTGACTTACAGAGGGAGC 59.238 41.667 24.64 0.00 0.00 4.70
653 679 5.997746 TGACAAATTTGACTTACAGAGGGAG 59.002 40.000 24.64 0.00 0.00 4.30
654 680 5.935945 TGACAAATTTGACTTACAGAGGGA 58.064 37.500 24.64 0.00 0.00 4.20
655 681 6.633500 TTGACAAATTTGACTTACAGAGGG 57.367 37.500 24.64 0.00 0.00 4.30
656 682 9.533253 AAATTTGACAAATTTGACTTACAGAGG 57.467 29.630 29.31 0.00 46.30 3.69
669 695 2.547634 GTGGCGGCAAATTTGACAAATT 59.452 40.909 23.49 18.41 42.62 1.82
670 696 2.142319 GTGGCGGCAAATTTGACAAAT 58.858 42.857 23.49 7.62 35.35 2.32
671 697 1.576356 GTGGCGGCAAATTTGACAAA 58.424 45.000 23.49 2.48 35.35 2.83
672 698 0.249657 GGTGGCGGCAAATTTGACAA 60.250 50.000 23.49 5.93 35.35 3.18
673 699 1.365633 GGTGGCGGCAAATTTGACA 59.634 52.632 23.49 11.95 35.35 3.58
674 700 0.943835 GTGGTGGCGGCAAATTTGAC 60.944 55.000 22.31 18.50 0.00 3.18
675 701 1.365633 GTGGTGGCGGCAAATTTGA 59.634 52.632 22.31 0.00 0.00 2.69
676 702 1.667510 GGTGGTGGCGGCAAATTTG 60.668 57.895 15.50 14.03 0.00 2.32
677 703 1.406860 AAGGTGGTGGCGGCAAATTT 61.407 50.000 15.50 1.20 0.00 1.82
678 704 1.815817 GAAGGTGGTGGCGGCAAATT 61.816 55.000 15.50 4.04 0.00 1.82
679 705 2.203625 AAGGTGGTGGCGGCAAAT 60.204 55.556 15.50 0.00 0.00 2.32
680 706 2.909965 GAAGGTGGTGGCGGCAAA 60.910 61.111 15.50 1.45 0.00 3.68
681 707 4.966787 GGAAGGTGGTGGCGGCAA 62.967 66.667 15.50 0.00 0.00 4.52
686 712 4.717313 GACGGGGAAGGTGGTGGC 62.717 72.222 0.00 0.00 0.00 5.01
687 713 4.388499 CGACGGGGAAGGTGGTGG 62.388 72.222 0.00 0.00 0.00 4.61
688 714 2.573609 GATCGACGGGGAAGGTGGTG 62.574 65.000 0.00 0.00 0.00 4.17
689 715 2.284405 ATCGACGGGGAAGGTGGT 60.284 61.111 0.00 0.00 0.00 4.16
690 716 2.355986 TGATCGACGGGGAAGGTGG 61.356 63.158 0.00 0.00 0.00 4.61
691 717 1.153628 GTGATCGACGGGGAAGGTG 60.154 63.158 0.00 0.00 0.00 4.00
692 718 1.608336 TGTGATCGACGGGGAAGGT 60.608 57.895 0.00 0.00 0.00 3.50
693 719 1.153628 GTGTGATCGACGGGGAAGG 60.154 63.158 0.00 0.00 0.00 3.46
694 720 1.516386 CGTGTGATCGACGGGGAAG 60.516 63.158 8.78 0.00 33.08 3.46
695 721 1.929806 CTCGTGTGATCGACGGGGAA 61.930 60.000 14.92 0.00 37.43 3.97
696 722 2.360225 TCGTGTGATCGACGGGGA 60.360 61.111 14.92 0.00 37.43 4.81
697 723 2.102357 CTCGTGTGATCGACGGGG 59.898 66.667 14.92 6.83 37.43 5.73
698 724 2.579787 GCTCGTGTGATCGACGGG 60.580 66.667 14.92 13.32 40.42 5.28
699 725 1.869574 CTGCTCGTGTGATCGACGG 60.870 63.158 14.92 8.49 37.43 4.79
700 726 2.500442 GCTGCTCGTGTGATCGACG 61.500 63.158 10.10 10.10 38.20 5.12
701 727 1.136872 GAGCTGCTCGTGTGATCGAC 61.137 60.000 14.68 0.00 35.91 4.20
702 728 1.137614 GAGCTGCTCGTGTGATCGA 59.862 57.895 14.68 0.00 38.19 3.59
703 729 0.865218 GAGAGCTGCTCGTGTGATCG 60.865 60.000 22.77 0.00 35.36 3.69
704 730 0.527385 GGAGAGCTGCTCGTGTGATC 60.527 60.000 22.77 13.79 44.91 2.92
705 731 1.253593 TGGAGAGCTGCTCGTGTGAT 61.254 55.000 22.77 5.26 44.91 3.06
706 732 1.871126 CTGGAGAGCTGCTCGTGTGA 61.871 60.000 22.77 6.83 44.91 3.58
707 733 1.445754 CTGGAGAGCTGCTCGTGTG 60.446 63.158 22.77 11.70 44.91 3.82
708 734 1.872197 GACTGGAGAGCTGCTCGTGT 61.872 60.000 22.77 18.53 44.91 4.49
709 735 1.153862 GACTGGAGAGCTGCTCGTG 60.154 63.158 22.77 15.85 44.91 4.35
721 747 0.609957 CTTGGCCATGCTTGACTGGA 60.610 55.000 6.09 0.00 34.24 3.86
722 748 0.609957 TCTTGGCCATGCTTGACTGG 60.610 55.000 6.09 0.00 35.53 4.00
723 749 0.524862 GTCTTGGCCATGCTTGACTG 59.475 55.000 6.09 0.00 0.00 3.51
724 750 0.610232 GGTCTTGGCCATGCTTGACT 60.610 55.000 6.09 0.00 0.00 3.41
725 751 0.895100 TGGTCTTGGCCATGCTTGAC 60.895 55.000 6.09 10.27 32.81 3.18
819 849 1.382009 GAGAGGGAGGGAGGGTGAC 60.382 68.421 0.00 0.00 0.00 3.67
822 852 3.369388 GGGAGAGGGAGGGAGGGT 61.369 72.222 0.00 0.00 0.00 4.34
824 854 4.548513 CCGGGAGAGGGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
832 862 1.475213 GGTTTTATGCTCCGGGAGAGG 60.475 57.143 27.95 2.49 43.46 3.69
842 872 2.290641 TGGATGGTCGTGGTTTTATGCT 60.291 45.455 0.00 0.00 0.00 3.79
890 920 1.334384 GGGGTTTGGGTGCTTTGTGT 61.334 55.000 0.00 0.00 0.00 3.72
916 946 6.294010 GGTTTGTTTAGAGAGAATTGTGGGTC 60.294 42.308 0.00 0.00 0.00 4.46
959 991 1.246737 GCTTTTGTAGCTGGGCTGCT 61.247 55.000 0.00 10.02 46.77 4.24
969 1001 1.749258 GGAGGGGCGGCTTTTGTAG 60.749 63.158 9.56 0.00 0.00 2.74
970 1002 2.353573 GGAGGGGCGGCTTTTGTA 59.646 61.111 9.56 0.00 0.00 2.41
1176 1215 3.618780 CTGCTGTGCCCACCTCCTC 62.619 68.421 0.00 0.00 0.00 3.71
1177 1216 3.644606 CTGCTGTGCCCACCTCCT 61.645 66.667 0.00 0.00 0.00 3.69
1181 1220 4.729918 CCTCCTGCTGTGCCCACC 62.730 72.222 0.00 0.00 0.00 4.61
1186 1225 2.583520 CTCCTCCTCCTGCTGTGC 59.416 66.667 0.00 0.00 0.00 4.57
1187 1226 3.028921 GCCTCCTCCTCCTGCTGTG 62.029 68.421 0.00 0.00 0.00 3.66
1188 1227 2.686835 GCCTCCTCCTCCTGCTGT 60.687 66.667 0.00 0.00 0.00 4.40
1189 1228 3.478274 GGCCTCCTCCTCCTGCTG 61.478 72.222 0.00 0.00 0.00 4.41
1356 1395 0.304705 GCGCGGAGTTTGGTATCATG 59.695 55.000 8.83 0.00 0.00 3.07
1518 1557 4.632974 GCCATAGCCGCCCTCCTG 62.633 72.222 0.00 0.00 0.00 3.86
1521 1560 4.671569 CTCGCCATAGCCGCCCTC 62.672 72.222 0.00 0.00 34.57 4.30
1530 1569 1.141019 GTTGGACGAGCTCGCCATA 59.859 57.895 35.90 27.13 42.06 2.74
1656 1695 1.527433 GCAACTCCACTTCCTTGGCC 61.527 60.000 0.00 0.00 36.48 5.36
1658 1697 1.237285 CGGCAACTCCACTTCCTTGG 61.237 60.000 0.00 0.00 38.10 3.61
1659 1698 1.237285 CCGGCAACTCCACTTCCTTG 61.237 60.000 0.00 0.00 34.01 3.61
1713 1761 1.065928 ATCTTCGTCCGCGTCCATC 59.934 57.895 4.92 0.00 39.49 3.51
2028 2079 2.126463 TTCTCCTCGTTGAGCGCG 60.126 61.111 0.00 0.00 41.07 6.86
2079 2130 4.423209 AGGAGGTCCAGGAGGGGC 62.423 72.222 0.00 0.00 42.12 5.80
2085 2136 1.687493 GGAGGTGAGGAGGTCCAGG 60.687 68.421 0.00 0.00 38.89 4.45
2602 2653 4.719106 GCACTCCAGGCTGCTGCT 62.719 66.667 15.64 0.00 39.59 4.24
2739 2790 2.791347 TTACATACAATGGTGGCGGT 57.209 45.000 0.00 0.00 33.60 5.68
2740 2791 4.156922 TCTTTTTACATACAATGGTGGCGG 59.843 41.667 0.00 0.00 33.60 6.13
2796 2855 1.212616 GAATTCATCCTCTCGTGGCG 58.787 55.000 0.00 0.00 0.00 5.69
2832 2903 3.740590 CACTTTCATCGACAATCACAGC 58.259 45.455 0.00 0.00 0.00 4.40
2906 2981 2.629656 GCAAACTCCATGGCACGCT 61.630 57.895 6.96 0.00 0.00 5.07
2908 2983 1.210931 CAGCAAACTCCATGGCACG 59.789 57.895 6.96 0.00 0.00 5.34
3134 3226 3.194062 GGATCGAGAGCAGAAAGAAAGG 58.806 50.000 0.00 0.00 0.00 3.11
3135 3227 3.616379 GTGGATCGAGAGCAGAAAGAAAG 59.384 47.826 0.00 0.00 0.00 2.62
3136 3228 3.259374 AGTGGATCGAGAGCAGAAAGAAA 59.741 43.478 0.00 0.00 0.00 2.52
3137 3229 2.828520 AGTGGATCGAGAGCAGAAAGAA 59.171 45.455 0.00 0.00 0.00 2.52
3182 3281 2.621338 CAATGCGACACATACTCCAGT 58.379 47.619 0.00 0.00 38.34 4.00
3211 3353 5.650543 GAACAAGAATTTACAATGGCCGAT 58.349 37.500 0.00 0.00 0.00 4.18
3260 3402 0.741221 GGCAAGCCGTGTAGAGAAGG 60.741 60.000 0.00 0.00 0.00 3.46
3261 3403 0.037326 TGGCAAGCCGTGTAGAGAAG 60.037 55.000 6.60 0.00 39.42 2.85
3340 3482 0.892755 TCGGTCGACCTACAGCAAAT 59.107 50.000 30.92 0.00 0.00 2.32
3391 3544 0.039978 CAGTCAGTCGCAACTCTCGT 60.040 55.000 0.00 0.00 31.71 4.18
3398 3551 1.285950 CTCCGTCAGTCAGTCGCAA 59.714 57.895 0.00 0.00 0.00 4.85
3401 3554 2.179517 GCCTCCGTCAGTCAGTCG 59.820 66.667 0.00 0.00 0.00 4.18
3429 3582 1.068127 CATTATCTTTGGCAGGCAGGC 59.932 52.381 0.00 0.00 44.50 4.85
3430 3583 1.068127 GCATTATCTTTGGCAGGCAGG 59.932 52.381 0.00 0.00 0.00 4.85
3431 3584 1.268896 CGCATTATCTTTGGCAGGCAG 60.269 52.381 0.00 0.00 0.00 4.85
3486 3650 4.798682 CCCACGGGAGGCCCTACT 62.799 72.222 0.00 0.00 42.67 2.57
3536 3701 1.067295 AGAGGCAACAACATCTGGGA 58.933 50.000 0.00 0.00 41.41 4.37
3537 3702 1.171308 CAGAGGCAACAACATCTGGG 58.829 55.000 0.00 0.00 36.39 4.45
3538 3703 0.524862 GCAGAGGCAACAACATCTGG 59.475 55.000 8.11 0.00 39.63 3.86
3539 3704 0.524862 GGCAGAGGCAACAACATCTG 59.475 55.000 2.06 2.06 43.71 2.90
3540 3705 0.403271 AGGCAGAGGCAACAACATCT 59.597 50.000 0.00 0.00 43.71 2.90
3553 3718 4.042062 TCCATCTCAAAAAGAAGAGGCAGA 59.958 41.667 0.00 0.00 37.61 4.26
3639 3804 6.551385 AATGGATGTTGATTAAGATCGAGC 57.449 37.500 0.00 0.00 37.43 5.03
3693 3858 6.701841 TCCATGAGCAATATAGAAAACTCGAC 59.298 38.462 0.00 0.00 0.00 4.20
3729 3897 0.890683 CCTCTCCGCCTTGCAAAATT 59.109 50.000 0.00 0.00 0.00 1.82
3730 3898 0.251341 ACCTCTCCGCCTTGCAAAAT 60.251 50.000 0.00 0.00 0.00 1.82
3742 3913 1.278127 TGGGTTTCAATCGACCTCTCC 59.722 52.381 0.00 0.00 36.18 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.