Multiple sequence alignment - TraesCS5D01G205900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G205900 chr5D 100.000 4277 0 0 1 4277 312070787 312066511 0.000000e+00 7899
1 TraesCS5D01G205900 chr5D 95.337 965 39 6 1 960 120810688 120811651 0.000000e+00 1528
2 TraesCS5D01G205900 chr5D 95.332 964 40 5 1 961 254482803 254481842 0.000000e+00 1526
3 TraesCS5D01G205900 chr5D 75.709 1482 303 35 1791 3236 312369798 312368338 0.000000e+00 689
4 TraesCS5D01G205900 chr5D 85.235 149 18 3 2928 3074 312061209 312061063 2.660000e-32 150
5 TraesCS5D01G205900 chr5D 93.258 89 5 1 3485 3573 500118295 500118382 3.470000e-26 130
6 TraesCS5D01G205900 chr5B 95.946 1702 60 4 1792 3487 358386153 358384455 0.000000e+00 2752
7 TraesCS5D01G205900 chr5B 95.881 704 29 0 960 1663 358386854 358386151 0.000000e+00 1140
8 TraesCS5D01G205900 chr5B 95.012 421 12 3 3569 3981 358384456 358384037 0.000000e+00 652
9 TraesCS5D01G205900 chr5B 93.697 238 15 0 3993 4230 358384053 358383816 1.460000e-94 357
10 TraesCS5D01G205900 chr5B 75.360 625 135 15 2620 3236 358631312 358630699 2.520000e-72 283
11 TraesCS5D01G205900 chr1D 96.674 962 30 2 1 960 303073569 303074530 0.000000e+00 1598
12 TraesCS5D01G205900 chr1D 95.135 966 44 3 1 963 414885027 414884062 0.000000e+00 1520
13 TraesCS5D01G205900 chr1D 90.722 97 7 2 3486 3582 295954300 295954206 1.250000e-25 128
14 TraesCS5D01G205900 chr4D 95.436 964 40 4 1 960 435019441 435018478 0.000000e+00 1533
15 TraesCS5D01G205900 chr6D 95.431 963 41 3 1 960 440671170 440672132 0.000000e+00 1531
16 TraesCS5D01G205900 chr6D 88.462 104 12 0 3464 3567 445763604 445763707 4.490000e-25 126
17 TraesCS5D01G205900 chr3D 95.145 968 44 3 1 965 11608023 11608990 0.000000e+00 1524
18 TraesCS5D01G205900 chr7D 95.223 963 42 4 1 960 8059776 8060737 0.000000e+00 1520
19 TraesCS5D01G205900 chr7D 95.228 964 41 5 1 960 169775637 169776599 0.000000e+00 1520
20 TraesCS5D01G205900 chr7D 96.591 88 3 0 3486 3573 155627097 155627010 3.450000e-31 147
21 TraesCS5D01G205900 chr7D 90.909 99 7 2 3474 3570 454088741 454088643 9.650000e-27 132
22 TraesCS5D01G205900 chr5A 96.222 847 26 2 2448 3289 405039874 405039029 0.000000e+00 1382
23 TraesCS5D01G205900 chr5A 75.395 1520 313 40 1791 3273 406483212 406481717 0.000000e+00 678
24 TraesCS5D01G205900 chr5A 86.806 144 15 3 2928 3069 405017419 405017278 1.590000e-34 158
25 TraesCS5D01G205900 chr5A 91.176 102 9 0 3281 3382 405036402 405036301 5.770000e-29 139
26 TraesCS5D01G205900 chr4B 98.529 136 2 0 1660 1795 450479638 450479773 1.540000e-59 241
27 TraesCS5D01G205900 chr6B 97.778 135 3 0 1660 1794 93565730 93565864 2.570000e-57 233
28 TraesCS5D01G205900 chr6B 95.652 138 5 1 1658 1795 82333015 82332879 2.000000e-53 220
29 TraesCS5D01G205900 chr6B 95.652 138 5 1 1658 1795 82424399 82424263 2.000000e-53 220
30 TraesCS5D01G205900 chr6B 94.928 138 6 1 1658 1795 82422075 82421939 9.310000e-52 215
31 TraesCS5D01G205900 chr3A 97.059 136 4 0 1660 1795 50750323 50750188 3.330000e-56 230
32 TraesCS5D01G205900 chr7B 95.588 136 4 1 1658 1791 744275340 744275205 2.590000e-52 217
33 TraesCS5D01G205900 chr7B 95.522 134 6 0 1660 1793 440194288 440194421 9.310000e-52 215
34 TraesCS5D01G205900 chr4A 95.522 134 6 0 1660 1793 690934391 690934524 9.310000e-52 215
35 TraesCS5D01G205900 chr2A 77.126 341 67 11 1862 2196 19403263 19403598 2.030000e-43 187
36 TraesCS5D01G205900 chr2A 91.304 92 8 0 3479 3570 81785673 81785582 4.490000e-25 126
37 TraesCS5D01G205900 chr2D 94.318 88 5 0 3485 3572 14895361 14895274 7.460000e-28 135
38 TraesCS5D01G205900 chr2D 92.308 91 7 0 3483 3573 331544235 331544145 3.470000e-26 130
39 TraesCS5D01G205900 chr1A 90.291 103 9 1 3478 3580 91047549 91047448 2.680000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G205900 chr5D 312066511 312070787 4276 True 7899.00 7899 100.000 1 4277 1 chr5D.!!$R3 4276
1 TraesCS5D01G205900 chr5D 120810688 120811651 963 False 1528.00 1528 95.337 1 960 1 chr5D.!!$F1 959
2 TraesCS5D01G205900 chr5D 254481842 254482803 961 True 1526.00 1526 95.332 1 961 1 chr5D.!!$R1 960
3 TraesCS5D01G205900 chr5D 312368338 312369798 1460 True 689.00 689 75.709 1791 3236 1 chr5D.!!$R4 1445
4 TraesCS5D01G205900 chr5B 358383816 358386854 3038 True 1225.25 2752 95.134 960 4230 4 chr5B.!!$R2 3270
5 TraesCS5D01G205900 chr5B 358630699 358631312 613 True 283.00 283 75.360 2620 3236 1 chr5B.!!$R1 616
6 TraesCS5D01G205900 chr1D 303073569 303074530 961 False 1598.00 1598 96.674 1 960 1 chr1D.!!$F1 959
7 TraesCS5D01G205900 chr1D 414884062 414885027 965 True 1520.00 1520 95.135 1 963 1 chr1D.!!$R2 962
8 TraesCS5D01G205900 chr4D 435018478 435019441 963 True 1533.00 1533 95.436 1 960 1 chr4D.!!$R1 959
9 TraesCS5D01G205900 chr6D 440671170 440672132 962 False 1531.00 1531 95.431 1 960 1 chr6D.!!$F1 959
10 TraesCS5D01G205900 chr3D 11608023 11608990 967 False 1524.00 1524 95.145 1 965 1 chr3D.!!$F1 964
11 TraesCS5D01G205900 chr7D 8059776 8060737 961 False 1520.00 1520 95.223 1 960 1 chr7D.!!$F1 959
12 TraesCS5D01G205900 chr7D 169775637 169776599 962 False 1520.00 1520 95.228 1 960 1 chr7D.!!$F2 959
13 TraesCS5D01G205900 chr5A 405036301 405039874 3573 True 760.50 1382 93.699 2448 3382 2 chr5A.!!$R3 934
14 TraesCS5D01G205900 chr5A 406481717 406483212 1495 True 678.00 678 75.395 1791 3273 1 chr5A.!!$R2 1482
15 TraesCS5D01G205900 chr6B 82421939 82424399 2460 True 217.50 220 95.290 1658 1795 2 chr6B.!!$R2 137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 943 0.959553 ATCCGTGTCTTGTGTCTCGT 59.040 50.0 0.0 0.0 0.00 4.18 F
1112 1121 0.108019 AAAAGGCTCCGGTCGAAAGT 59.892 50.0 0.0 0.0 0.00 2.66 F
1200 1209 0.390124 AGGTTTACAACGTCGGCTCA 59.610 50.0 0.0 0.0 0.00 4.26 F
1979 2016 0.654683 CAGCGTTCTTATGCCTGAGC 59.345 55.0 0.0 0.0 36.95 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 1927 0.180406 ACTCAAGCAAACCCGACTGT 59.820 50.000 0.00 0.00 0.00 3.55 R
2815 3067 0.737715 GCAGCTAGTGTCTTCCACCG 60.738 60.000 0.00 0.00 45.74 4.94 R
3171 3547 5.283457 GTATAGGCCATACCATCTGATCC 57.717 47.826 5.01 0.00 43.14 3.36 R
3735 7357 1.145738 ACAAATCAAGCTGGTCCAGGT 59.854 47.619 18.12 18.12 44.48 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.256631 GGAAAAGAGCATTGGAAAGCAGA 59.743 43.478 0.00 0.00 0.00 4.26
60 61 3.689649 GTGGATTTTCAGATACCTGCGTT 59.310 43.478 0.00 0.00 40.20 4.84
184 186 5.830457 TCACAGGTTATGTTTTCACCATTGA 59.170 36.000 0.00 0.00 41.41 2.57
211 213 1.155042 GCTGTGAGTTGGAGAGCAAG 58.845 55.000 0.00 0.00 30.21 4.01
279 281 3.069158 GGCTATTTCTGAGGCATGCAAAT 59.931 43.478 21.36 17.47 39.24 2.32
282 284 6.275335 GCTATTTCTGAGGCATGCAAATAAA 58.725 36.000 21.36 12.68 0.00 1.40
312 314 4.443034 GGTTGAGAGGTTTGTACACTGAGT 60.443 45.833 0.00 0.00 0.00 3.41
334 336 3.726557 TTGTGGAGATTCATCTTGCCT 57.273 42.857 0.00 0.00 37.25 4.75
418 420 5.300034 AGAGAACAAAGCACATTGATGTCAA 59.700 36.000 0.00 0.00 39.39 3.18
500 502 9.706529 AGTACTCATGATAATCCTGCTGATATA 57.293 33.333 0.00 0.00 31.83 0.86
553 555 4.342862 AGCTTTGCTCAGACTTAGTTGA 57.657 40.909 0.00 0.00 30.62 3.18
636 638 8.337532 GGAGTTATCTACTTTCTTCGACTACTC 58.662 40.741 0.00 0.00 37.17 2.59
823 827 1.416401 CCCCATGTAGTCGCACCTAAT 59.584 52.381 0.00 0.00 0.00 1.73
857 861 3.064958 TCTCGTGCTTGTAATACTCCTCG 59.935 47.826 0.00 0.00 0.00 4.63
902 907 1.448922 CCGTGGTTTTCTCCCGCAAA 61.449 55.000 0.00 0.00 32.61 3.68
933 939 4.025480 ACGTAAAAATCCGTGTCTTGTGTC 60.025 41.667 0.00 0.00 35.69 3.67
936 942 2.065993 AATCCGTGTCTTGTGTCTCG 57.934 50.000 0.00 0.00 0.00 4.04
937 943 0.959553 ATCCGTGTCTTGTGTCTCGT 59.040 50.000 0.00 0.00 0.00 4.18
1112 1121 0.108019 AAAAGGCTCCGGTCGAAAGT 59.892 50.000 0.00 0.00 0.00 2.66
1127 1136 2.096417 CGAAAGTGTGGGACGATTTCAC 60.096 50.000 0.00 0.00 30.34 3.18
1128 1137 2.631160 AAGTGTGGGACGATTTCACA 57.369 45.000 0.00 0.00 38.84 3.58
1155 1164 0.731514 TCGTCGGAACTAAGCTTGCG 60.732 55.000 9.86 0.00 36.41 4.85
1159 1168 1.271379 TCGGAACTAAGCTTGCGAAGA 59.729 47.619 9.86 0.00 40.50 2.87
1173 1182 1.065102 GCGAAGACTGAATGCATGCAT 59.935 47.619 27.46 27.46 38.46 3.96
1200 1209 0.390124 AGGTTTACAACGTCGGCTCA 59.610 50.000 0.00 0.00 0.00 4.26
1213 1222 2.103042 GGCTCAAGTGGCACTAGCG 61.103 63.158 27.31 17.36 43.41 4.26
1214 1223 2.103042 GCTCAAGTGGCACTAGCGG 61.103 63.158 22.58 13.83 43.41 5.52
1270 1279 2.617532 GCCCATAAAAGGCCAATGCAAA 60.618 45.455 5.01 0.00 45.16 3.68
1276 1285 3.280197 AAAGGCCAATGCAAAACAAGT 57.720 38.095 5.01 0.00 40.13 3.16
1282 1291 4.496175 GGCCAATGCAAAACAAGTTTCAAG 60.496 41.667 0.00 0.00 40.13 3.02
1290 1299 2.559998 ACAAGTTTCAAGTGTTGCCG 57.440 45.000 0.00 0.00 0.00 5.69
1359 1368 2.439104 GCTCCCATTCTCCCTCGCT 61.439 63.158 0.00 0.00 0.00 4.93
1361 1370 1.414158 CTCCCATTCTCCCTCGCTAA 58.586 55.000 0.00 0.00 0.00 3.09
1399 1408 0.800683 CACAGCCGATGCAATGCTTG 60.801 55.000 6.82 0.00 41.13 4.01
1419 1428 4.170468 TGAGAAGAAGGGTCTTGCTTTT 57.830 40.909 0.00 0.00 44.42 2.27
1433 1442 4.279169 TCTTGCTTTTCTTGACATTCCCAG 59.721 41.667 0.00 0.00 0.00 4.45
1453 1462 3.688185 CAGTGACATGAATCAGGAGGTTG 59.312 47.826 0.58 0.00 0.00 3.77
1454 1463 3.012518 GTGACATGAATCAGGAGGTTGG 58.987 50.000 0.58 0.00 0.00 3.77
1509 1518 2.613977 CGAGCAGAAGAATCAGTTGGGT 60.614 50.000 0.00 0.00 0.00 4.51
1512 1521 1.466167 CAGAAGAATCAGTTGGGTGCG 59.534 52.381 0.00 0.00 0.00 5.34
1634 1643 3.127533 GCACGGGCACTCACCATC 61.128 66.667 3.77 0.00 40.72 3.51
1635 1644 2.815211 CACGGGCACTCACCATCG 60.815 66.667 0.00 0.00 0.00 3.84
1660 1669 7.093902 CGATAAGAGCCCATGATAGGTTTAGTA 60.094 40.741 0.00 0.00 0.00 1.82
1740 1749 1.000843 GGTCAAAATGGTGGAGTTGCC 59.999 52.381 0.00 0.00 37.10 4.52
1763 1772 4.918201 CCCGCTCCGCAGATTCCC 62.918 72.222 0.00 0.00 0.00 3.97
1818 1833 4.334552 TGTTGCTTGCTTGAATCCTATGA 58.665 39.130 0.00 0.00 0.00 2.15
1886 1901 6.754193 ACTGTTTGACAAAGAAAAGACCAAA 58.246 32.000 0.00 0.00 0.00 3.28
1912 1927 0.670162 GAGAAGCTTGCCACTTTGCA 59.330 50.000 2.10 0.00 40.07 4.08
1979 2016 0.654683 CAGCGTTCTTATGCCTGAGC 59.345 55.000 0.00 0.00 36.95 4.26
1994 2031 3.242543 GCCTGAGCGTTCATTACATTGAG 60.243 47.826 1.26 0.00 31.68 3.02
2165 2202 6.968131 TTTCTGGATGATTCAGTTACTTCG 57.032 37.500 0.00 0.00 34.15 3.79
2254 2315 8.845227 TGTAAATCAGAGCTTGTTTGTGATAAA 58.155 29.630 0.00 0.00 0.00 1.40
2294 2355 2.128771 ACCATGTCATACAGGTTGGC 57.871 50.000 0.00 0.00 30.81 4.52
2340 2401 4.592179 GCAGAAGTCAACAAAGTGTTCTC 58.408 43.478 0.00 0.00 38.77 2.87
2343 2404 4.333926 AGAAGTCAACAAAGTGTTCTCAGC 59.666 41.667 0.00 0.00 38.77 4.26
2346 2407 4.036027 AGTCAACAAAGTGTTCTCAGCATG 59.964 41.667 0.00 0.00 38.77 4.06
2354 2415 1.202915 TGTTCTCAGCATGCAAAGGGA 60.203 47.619 21.98 11.87 34.76 4.20
2526 2587 3.081804 GACAAGGTGTGGGATGTTAAGG 58.918 50.000 0.00 0.00 0.00 2.69
2645 2706 6.969473 GGAAACTCTGTTGCTTAAATATCTGC 59.031 38.462 0.00 0.00 0.00 4.26
2776 2837 7.482654 TGGAAGATTATATTGAAGAAGTGCG 57.517 36.000 0.00 0.00 0.00 5.34
2815 3067 8.997323 CAACCTCTATTGTGAATATTCTGATCC 58.003 37.037 16.24 0.99 0.00 3.36
3171 3547 0.946221 GTGTGTTCAGGACTGGCTCG 60.946 60.000 0.00 0.00 0.00 5.03
3252 3640 5.358725 TGCTAACCGTAGTTCTCATGTCATA 59.641 40.000 0.00 0.00 37.42 2.15
3253 3641 6.127563 TGCTAACCGTAGTTCTCATGTCATAA 60.128 38.462 0.00 0.00 37.42 1.90
3254 3642 6.924060 GCTAACCGTAGTTCTCATGTCATAAT 59.076 38.462 0.00 0.00 37.42 1.28
3378 6992 2.351447 CCTTTTCGACGAGTGACTGCTA 60.351 50.000 0.00 0.00 0.00 3.49
3389 7003 3.596214 AGTGACTGCTAATTGGTTACCG 58.404 45.455 0.00 0.00 0.00 4.02
3452 7066 5.483937 AGGGAGTTCCTTTTTGACAGTTTTT 59.516 36.000 0.00 0.00 45.47 1.94
3487 7101 6.092670 TGCTAAGCTGATTTGTCAAGATGTAC 59.907 38.462 0.00 0.00 0.00 2.90
3488 7102 6.314896 GCTAAGCTGATTTGTCAAGATGTACT 59.685 38.462 0.00 0.00 0.00 2.73
3489 7103 6.734104 AAGCTGATTTGTCAAGATGTACTC 57.266 37.500 0.00 0.00 0.00 2.59
3490 7104 5.181748 AGCTGATTTGTCAAGATGTACTCC 58.818 41.667 0.00 0.00 0.00 3.85
3491 7105 4.333926 GCTGATTTGTCAAGATGTACTCCC 59.666 45.833 0.00 0.00 0.00 4.30
3492 7106 5.738909 CTGATTTGTCAAGATGTACTCCCT 58.261 41.667 0.00 0.00 0.00 4.20
3493 7107 5.734720 TGATTTGTCAAGATGTACTCCCTC 58.265 41.667 0.00 0.00 0.00 4.30
3494 7108 5.485353 TGATTTGTCAAGATGTACTCCCTCT 59.515 40.000 0.00 0.00 0.00 3.69
3495 7109 4.808414 TTGTCAAGATGTACTCCCTCTG 57.192 45.455 0.00 0.00 0.00 3.35
3496 7110 3.779444 TGTCAAGATGTACTCCCTCTGT 58.221 45.455 0.00 0.00 0.00 3.41
3497 7111 4.160329 TGTCAAGATGTACTCCCTCTGTT 58.840 43.478 0.00 0.00 0.00 3.16
3498 7112 4.220821 TGTCAAGATGTACTCCCTCTGTTC 59.779 45.833 0.00 0.00 0.00 3.18
3499 7113 3.769844 TCAAGATGTACTCCCTCTGTTCC 59.230 47.826 0.00 0.00 0.00 3.62
3500 7114 3.474798 AGATGTACTCCCTCTGTTCCA 57.525 47.619 0.00 0.00 0.00 3.53
3501 7115 4.000928 AGATGTACTCCCTCTGTTCCAT 57.999 45.455 0.00 0.00 0.00 3.41
3502 7116 5.144159 AGATGTACTCCCTCTGTTCCATA 57.856 43.478 0.00 0.00 0.00 2.74
3503 7117 5.529289 AGATGTACTCCCTCTGTTCCATAA 58.471 41.667 0.00 0.00 0.00 1.90
3506 7120 7.958583 AGATGTACTCCCTCTGTTCCATAATAT 59.041 37.037 0.00 0.00 0.00 1.28
3510 7124 9.310449 GTACTCCCTCTGTTCCATAATATAAGA 57.690 37.037 0.00 0.00 0.00 2.10
3561 7175 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
3562 7176 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
3564 7178 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
3565 7179 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
3566 7180 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
3569 7183 9.452517 CTCTTATATTATGGGATGGAGGGAATA 57.547 37.037 0.00 0.00 0.00 1.75
3580 7194 6.272558 GGGATGGAGGGAATAGTTAACAGTAT 59.727 42.308 8.61 0.00 0.00 2.12
3598 7212 8.577048 AACAGTATAGTAGCTTCTCAGTTACA 57.423 34.615 0.00 0.00 38.79 2.41
3599 7213 8.215926 ACAGTATAGTAGCTTCTCAGTTACAG 57.784 38.462 0.00 0.00 38.79 2.74
3600 7214 7.830201 ACAGTATAGTAGCTTCTCAGTTACAGT 59.170 37.037 0.00 0.00 38.79 3.55
3601 7215 9.327628 CAGTATAGTAGCTTCTCAGTTACAGTA 57.672 37.037 0.00 0.00 38.79 2.74
3602 7216 9.902684 AGTATAGTAGCTTCTCAGTTACAGTAA 57.097 33.333 0.00 0.00 38.79 2.24
3605 7219 6.011481 AGTAGCTTCTCAGTTACAGTAAGGT 58.989 40.000 0.00 0.00 38.79 3.50
3606 7220 5.140747 AGCTTCTCAGTTACAGTAAGGTG 57.859 43.478 0.00 0.00 0.00 4.00
3607 7221 4.589374 AGCTTCTCAGTTACAGTAAGGTGT 59.411 41.667 0.00 0.00 34.21 4.16
3762 7384 1.879380 CCAGCTTGATTTGTCGGTTCA 59.121 47.619 0.00 0.00 0.00 3.18
3841 7463 6.161855 TCTGATTTATGCCACTTCTACGAT 57.838 37.500 0.00 0.00 0.00 3.73
3857 7479 6.651975 TCTACGATTAGAATCCTCTTTCCC 57.348 41.667 0.00 0.00 30.88 3.97
3905 7527 1.521010 CTCATGCGAGGCTGTCCAG 60.521 63.158 0.00 0.00 35.44 3.86
3968 7590 8.419076 TCATTGGTTTCTTTTCTTTTAACAGC 57.581 30.769 0.00 0.00 0.00 4.40
3969 7591 8.037758 TCATTGGTTTCTTTTCTTTTAACAGCA 58.962 29.630 0.00 0.00 0.00 4.41
3970 7592 8.663911 CATTGGTTTCTTTTCTTTTAACAGCAA 58.336 29.630 0.00 0.00 0.00 3.91
3971 7593 7.589574 TGGTTTCTTTTCTTTTAACAGCAAC 57.410 32.000 0.00 0.00 0.00 4.17
3972 7594 7.155328 TGGTTTCTTTTCTTTTAACAGCAACA 58.845 30.769 0.00 0.00 0.00 3.33
3973 7595 7.657761 TGGTTTCTTTTCTTTTAACAGCAACAA 59.342 29.630 0.00 0.00 0.00 2.83
3974 7596 7.955324 GGTTTCTTTTCTTTTAACAGCAACAAC 59.045 33.333 0.00 0.00 0.00 3.32
3975 7597 8.491950 GTTTCTTTTCTTTTAACAGCAACAACA 58.508 29.630 0.00 0.00 0.00 3.33
3976 7598 8.594881 TTCTTTTCTTTTAACAGCAACAACAA 57.405 26.923 0.00 0.00 0.00 2.83
3977 7599 8.770438 TCTTTTCTTTTAACAGCAACAACAAT 57.230 26.923 0.00 0.00 0.00 2.71
3978 7600 9.862371 TCTTTTCTTTTAACAGCAACAACAATA 57.138 25.926 0.00 0.00 0.00 1.90
3986 7608 9.994432 TTTAACAGCAACAACAATAATTTTTGG 57.006 25.926 12.41 0.00 0.00 3.28
3987 7609 7.856145 AACAGCAACAACAATAATTTTTGGA 57.144 28.000 12.41 0.00 0.00 3.53
3988 7610 7.856145 ACAGCAACAACAATAATTTTTGGAA 57.144 28.000 12.41 0.00 0.00 3.53
3989 7611 8.273780 ACAGCAACAACAATAATTTTTGGAAA 57.726 26.923 12.41 0.00 0.00 3.13
3990 7612 8.397148 ACAGCAACAACAATAATTTTTGGAAAG 58.603 29.630 12.41 3.08 0.00 2.62
3991 7613 7.856894 CAGCAACAACAATAATTTTTGGAAAGG 59.143 33.333 12.41 1.94 0.00 3.11
4002 7624 3.518634 TTTGGAAAGGACAGCAACAAC 57.481 42.857 0.00 0.00 0.00 3.32
4052 7674 0.232303 GTTGTCTCAACAAGGCGTCG 59.768 55.000 7.60 0.00 45.78 5.12
4053 7675 0.878523 TTGTCTCAACAAGGCGTCGG 60.879 55.000 0.00 0.00 40.45 4.79
4060 7682 1.868498 CAACAAGGCGTCGGTAAGAAA 59.132 47.619 0.00 0.00 0.00 2.52
4076 7698 1.822990 AGAAACAGATGCATGGCCAAG 59.177 47.619 10.96 6.55 0.00 3.61
4147 7769 2.425668 TGAGATTGTGAGCAATGGCATG 59.574 45.455 0.00 0.00 44.61 4.06
4151 7773 0.323087 TGTGAGCAATGGCATGAGCT 60.323 50.000 22.81 22.81 44.61 4.09
4176 7798 2.198827 TCCCAAAATGTCATGCGTCT 57.801 45.000 0.00 0.00 0.00 4.18
4180 7802 3.627123 CCCAAAATGTCATGCGTCTATCA 59.373 43.478 0.00 0.00 0.00 2.15
4187 7809 4.661125 TGTCATGCGTCTATCAATTTTGC 58.339 39.130 0.00 0.00 0.00 3.68
4195 7817 5.726688 GCGTCTATCAATTTTGCGTGTGTAT 60.727 40.000 0.00 0.00 0.00 2.29
4207 7829 2.117137 CGTGTGTATGTGTATCTCGGC 58.883 52.381 0.00 0.00 0.00 5.54
4246 7868 3.306634 GCTAACGGCCGATTCGAC 58.693 61.111 35.90 12.10 34.27 4.20
4247 7869 1.226888 GCTAACGGCCGATTCGACT 60.227 57.895 35.90 3.57 34.27 4.18
4248 7870 1.480219 GCTAACGGCCGATTCGACTG 61.480 60.000 35.90 13.06 34.27 3.51
4249 7871 1.480219 CTAACGGCCGATTCGACTGC 61.480 60.000 35.90 2.31 0.00 4.40
4253 7875 1.716172 GGCCGATTCGACTGCTTTC 59.284 57.895 7.83 0.00 0.00 2.62
4254 7876 1.019278 GGCCGATTCGACTGCTTTCA 61.019 55.000 7.83 0.00 0.00 2.69
4255 7877 0.095417 GCCGATTCGACTGCTTTCAC 59.905 55.000 7.83 0.00 0.00 3.18
4256 7878 1.428448 CCGATTCGACTGCTTTCACA 58.572 50.000 7.83 0.00 0.00 3.58
4257 7879 1.798223 CCGATTCGACTGCTTTCACAA 59.202 47.619 7.83 0.00 0.00 3.33
4258 7880 2.411547 CCGATTCGACTGCTTTCACAAC 60.412 50.000 7.83 0.00 0.00 3.32
4260 7882 0.934496 TTCGACTGCTTTCACAACGG 59.066 50.000 0.00 0.00 0.00 4.44
4261 7883 0.179094 TCGACTGCTTTCACAACGGT 60.179 50.000 0.00 0.00 0.00 4.83
4262 7884 1.067364 TCGACTGCTTTCACAACGGTA 59.933 47.619 0.00 0.00 0.00 4.02
4263 7885 2.066262 CGACTGCTTTCACAACGGTAT 58.934 47.619 0.00 0.00 0.00 2.73
4264 7886 3.057386 TCGACTGCTTTCACAACGGTATA 60.057 43.478 0.00 0.00 0.00 1.47
4265 7887 3.676172 CGACTGCTTTCACAACGGTATAA 59.324 43.478 0.00 0.00 0.00 0.98
4266 7888 4.433805 CGACTGCTTTCACAACGGTATAAC 60.434 45.833 0.00 0.00 0.00 1.89
4267 7889 4.382291 ACTGCTTTCACAACGGTATAACA 58.618 39.130 0.00 0.00 0.00 2.41
4269 7891 6.167685 ACTGCTTTCACAACGGTATAACATA 58.832 36.000 0.00 0.00 0.00 2.29
4270 7892 6.821665 ACTGCTTTCACAACGGTATAACATAT 59.178 34.615 0.00 0.00 0.00 1.78
4271 7893 7.982919 ACTGCTTTCACAACGGTATAACATATA 59.017 33.333 0.00 0.00 0.00 0.86
4273 7895 9.332502 TGCTTTCACAACGGTATAACATATATT 57.667 29.630 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.128919 GCAGGTATCTGAAAATCCACTGAT 58.871 41.667 7.33 0.00 43.49 2.90
184 186 1.133823 TCCAACTCACAGCACAACCAT 60.134 47.619 0.00 0.00 0.00 3.55
211 213 3.004734 ACAAGCCACAATAGACTGCAAAC 59.995 43.478 0.00 0.00 0.00 2.93
279 281 7.074653 ACAAACCTCTCAACCAGATAGTTTA 57.925 36.000 0.00 0.00 36.23 2.01
282 284 5.542635 TGTACAAACCTCTCAACCAGATAGT 59.457 40.000 0.00 0.00 0.00 2.12
312 314 4.410099 AGGCAAGATGAATCTCCACAAAA 58.590 39.130 0.00 0.00 35.76 2.44
334 336 8.783093 CACTTTGACTGTCAGAAAATATGGTAA 58.217 33.333 10.77 0.00 0.00 2.85
445 447 4.282957 TGCATACCTTCAAATTGCCTTCAA 59.717 37.500 0.00 0.00 36.51 2.69
500 502 2.365293 GGTTGGAACTGGCTTTGTCATT 59.635 45.455 0.00 0.00 0.00 2.57
544 546 9.482175 AGGACTAGTGAGAAATATCAACTAAGT 57.518 33.333 0.00 0.00 30.91 2.24
636 638 2.684881 CACCTTGATCCAAATTCCCTCG 59.315 50.000 0.00 0.00 0.00 4.63
714 716 3.591835 AACGCAAAGGCCCACACG 61.592 61.111 0.00 0.82 36.38 4.49
823 827 1.904852 GCACGAGACGACAGACCGTA 61.905 60.000 0.00 0.00 43.49 4.02
857 861 2.864343 ACGAAGGCGCAATCACTATAAC 59.136 45.455 10.83 0.00 42.48 1.89
928 934 9.229784 GATAATAACGAGATAAAACGAGACACA 57.770 33.333 0.00 0.00 0.00 3.72
929 935 9.448294 AGATAATAACGAGATAAAACGAGACAC 57.552 33.333 0.00 0.00 0.00 3.67
1112 1121 0.250553 GGGTGTGAAATCGTCCCACA 60.251 55.000 0.00 0.00 38.34 4.17
1127 1136 1.519408 AGTTCCGACGAAAATGGGTG 58.481 50.000 0.00 0.00 0.00 4.61
1128 1137 3.332034 CTTAGTTCCGACGAAAATGGGT 58.668 45.455 0.00 0.00 0.00 4.51
1173 1182 2.614983 GACGTTGTAAACCTTCTGGCAA 59.385 45.455 0.00 0.00 46.28 4.52
1270 1279 2.230266 ACGGCAACACTTGAAACTTGTT 59.770 40.909 0.00 0.00 33.69 2.83
1276 1285 2.215196 GGTAGACGGCAACACTTGAAA 58.785 47.619 0.00 0.00 0.00 2.69
1282 1291 0.034337 TTCTGGGTAGACGGCAACAC 59.966 55.000 0.00 0.00 31.21 3.32
1290 1299 0.173708 CGGTGCTCTTCTGGGTAGAC 59.826 60.000 0.00 0.00 31.21 2.59
1318 1327 0.467290 TTCTGTGTCAAACCAGGGCC 60.467 55.000 0.00 0.00 0.00 5.80
1399 1408 4.393834 AGAAAAGCAAGACCCTTCTTCTC 58.606 43.478 0.00 0.00 40.34 2.87
1419 1428 3.327464 TCATGTCACTGGGAATGTCAAGA 59.673 43.478 0.00 0.00 0.00 3.02
1433 1442 3.012518 CCAACCTCCTGATTCATGTCAC 58.987 50.000 0.00 0.00 0.00 3.67
1453 1462 5.287674 TCCTCATGAGATGAATTCTGACC 57.712 43.478 24.62 0.00 39.11 4.02
1454 1463 6.347696 AGTTCCTCATGAGATGAATTCTGAC 58.652 40.000 24.62 7.54 39.11 3.51
1479 1488 2.049156 TTCTGCTCGTGTCCTGCG 60.049 61.111 0.00 0.00 0.00 5.18
1487 1496 2.613977 CCCAACTGATTCTTCTGCTCGT 60.614 50.000 0.00 0.00 0.00 4.18
1626 1635 1.688735 TGGGCTCTTATCGATGGTGAG 59.311 52.381 8.54 12.93 0.00 3.51
1634 1643 4.543590 AACCTATCATGGGCTCTTATCG 57.456 45.455 0.00 0.00 0.00 2.92
1635 1644 7.010339 ACTAAACCTATCATGGGCTCTTATC 57.990 40.000 0.00 0.00 0.00 1.75
1660 1669 2.044946 GATGCCGAACAGCCCCTT 60.045 61.111 0.00 0.00 0.00 3.95
1763 1772 2.279252 CGGTAATGGTCCGCTCCG 60.279 66.667 0.00 0.00 41.48 4.63
1818 1833 6.540083 TGACATATTCATCTGGCATCTTGAT 58.460 36.000 0.00 0.00 0.00 2.57
1886 1901 0.767375 TGGCAAGCTTCTCCTTCAGT 59.233 50.000 13.67 0.00 0.00 3.41
1912 1927 0.180406 ACTCAAGCAAACCCGACTGT 59.820 50.000 0.00 0.00 0.00 3.55
1979 2016 6.432936 CCATTCATCCTCAATGTAATGAACG 58.567 40.000 8.82 3.42 40.00 3.95
1994 2031 3.287867 TTCTGCTTCTCCCATTCATCC 57.712 47.619 0.00 0.00 0.00 3.51
2165 2202 1.066858 TGGAGACGAGCTTTGACATCC 60.067 52.381 0.00 0.00 0.00 3.51
2276 2337 2.127271 TGCCAACCTGTATGACATGG 57.873 50.000 0.00 0.00 30.85 3.66
2294 2355 5.333645 CGTGACTTTCTCAAGTTCATCCTTG 60.334 44.000 0.00 0.00 43.79 3.61
2340 2401 0.892755 ATGTGTCCCTTTGCATGCTG 59.107 50.000 20.33 8.96 0.00 4.41
2343 2404 2.660189 GGAATGTGTCCCTTTGCATG 57.340 50.000 0.00 0.00 41.10 4.06
2354 2415 8.204836 GGATAATGTACTACTGAAGGAATGTGT 58.795 37.037 0.00 0.00 0.00 3.72
2645 2706 4.505324 AGGATCCATGATCATAGGCATG 57.495 45.455 15.82 0.00 40.50 4.06
2776 2837 2.648059 AGAGGTTGAGCAATATGGCAC 58.352 47.619 4.54 0.00 35.83 5.01
2815 3067 0.737715 GCAGCTAGTGTCTTCCACCG 60.738 60.000 0.00 0.00 45.74 4.94
3171 3547 5.283457 GTATAGGCCATACCATCTGATCC 57.717 47.826 5.01 0.00 43.14 3.36
3252 3640 2.294791 CTCGCTCGAGGAACCTATGATT 59.705 50.000 15.58 0.00 38.51 2.57
3253 3641 1.883275 CTCGCTCGAGGAACCTATGAT 59.117 52.381 15.58 0.00 38.51 2.45
3254 3642 1.309950 CTCGCTCGAGGAACCTATGA 58.690 55.000 15.58 0.00 38.51 2.15
3337 6951 3.722101 AGGATAGGATTAAAGTGGGTGGG 59.278 47.826 0.00 0.00 0.00 4.61
3378 6992 3.417101 TGCATCAGAACGGTAACCAATT 58.583 40.909 0.00 0.00 0.00 2.32
3389 7003 5.294306 TCGTATTTGAATCCTGCATCAGAAC 59.706 40.000 0.00 0.00 32.44 3.01
3452 7066 2.110578 TCAGCTTAGCATACTGCCTCA 58.889 47.619 7.07 0.00 46.52 3.86
3536 7150 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
3537 7151 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
3538 7152 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
3539 7153 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
3540 7154 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
3541 7155 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
3542 7156 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
3543 7157 7.755666 TTCCCTCCATCCCATAATATAAGAG 57.244 40.000 0.00 0.00 0.00 2.85
3545 7159 9.230477 ACTATTCCCTCCATCCCATAATATAAG 57.770 37.037 0.00 0.00 0.00 1.73
3548 7162 9.588432 TTAACTATTCCCTCCATCCCATAATAT 57.412 33.333 0.00 0.00 0.00 1.28
3549 7163 8.832735 GTTAACTATTCCCTCCATCCCATAATA 58.167 37.037 0.00 0.00 0.00 0.98
3550 7164 7.297108 TGTTAACTATTCCCTCCATCCCATAAT 59.703 37.037 7.22 0.00 0.00 1.28
3551 7165 6.621931 TGTTAACTATTCCCTCCATCCCATAA 59.378 38.462 7.22 0.00 0.00 1.90
3552 7166 6.154645 TGTTAACTATTCCCTCCATCCCATA 58.845 40.000 7.22 0.00 0.00 2.74
3554 7168 4.376223 TGTTAACTATTCCCTCCATCCCA 58.624 43.478 7.22 0.00 0.00 4.37
3556 7170 5.632034 ACTGTTAACTATTCCCTCCATCC 57.368 43.478 7.22 0.00 0.00 3.51
3559 7173 9.584008 CTACTATACTGTTAACTATTCCCTCCA 57.416 37.037 7.22 0.00 0.00 3.86
3560 7174 8.522003 GCTACTATACTGTTAACTATTCCCTCC 58.478 40.741 7.22 0.00 0.00 4.30
3561 7175 9.299465 AGCTACTATACTGTTAACTATTCCCTC 57.701 37.037 7.22 0.00 0.00 4.30
3562 7176 9.657728 AAGCTACTATACTGTTAACTATTCCCT 57.342 33.333 7.22 0.00 0.00 4.20
3569 7183 8.810990 ACTGAGAAGCTACTATACTGTTAACT 57.189 34.615 7.22 0.00 0.00 2.24
3580 7194 7.120873 CACCTTACTGTAACTGAGAAGCTACTA 59.879 40.741 0.00 0.00 0.00 1.82
3598 7212 5.701290 GCATAGACACAAAAGACACCTTACT 59.299 40.000 0.00 0.00 31.15 2.24
3599 7213 5.701290 AGCATAGACACAAAAGACACCTTAC 59.299 40.000 0.00 0.00 31.15 2.34
3600 7214 5.865085 AGCATAGACACAAAAGACACCTTA 58.135 37.500 0.00 0.00 31.15 2.69
3601 7215 4.718961 AGCATAGACACAAAAGACACCTT 58.281 39.130 0.00 0.00 0.00 3.50
3602 7216 4.357918 AGCATAGACACAAAAGACACCT 57.642 40.909 0.00 0.00 0.00 4.00
3603 7217 4.320494 CCAAGCATAGACACAAAAGACACC 60.320 45.833 0.00 0.00 0.00 4.16
3605 7219 4.275689 CACCAAGCATAGACACAAAAGACA 59.724 41.667 0.00 0.00 0.00 3.41
3606 7220 4.515191 TCACCAAGCATAGACACAAAAGAC 59.485 41.667 0.00 0.00 0.00 3.01
3607 7221 4.713553 TCACCAAGCATAGACACAAAAGA 58.286 39.130 0.00 0.00 0.00 2.52
3705 7327 9.715121 ACGTAAATTTTTCATGAGAGGTACTAA 57.285 29.630 0.00 0.00 41.55 2.24
3735 7357 1.145738 ACAAATCAAGCTGGTCCAGGT 59.854 47.619 18.12 18.12 44.48 4.00
3841 7463 5.484290 AGAAAGACGGGAAAGAGGATTCTAA 59.516 40.000 0.00 0.00 31.96 2.10
3905 7527 3.950232 TCCCTATGGACCACGCTC 58.050 61.111 0.00 0.00 35.03 5.03
3964 7586 7.856145 TTCCAAAAATTATTGTTGTTGCTGT 57.144 28.000 7.05 0.00 0.00 4.40
3965 7587 7.856894 CCTTTCCAAAAATTATTGTTGTTGCTG 59.143 33.333 7.05 0.00 0.00 4.41
3966 7588 7.772757 TCCTTTCCAAAAATTATTGTTGTTGCT 59.227 29.630 7.05 0.00 0.00 3.91
3967 7589 7.855409 GTCCTTTCCAAAAATTATTGTTGTTGC 59.145 33.333 7.05 0.00 0.00 4.17
3968 7590 8.887717 TGTCCTTTCCAAAAATTATTGTTGTTG 58.112 29.630 7.05 0.00 0.00 3.33
3969 7591 9.108284 CTGTCCTTTCCAAAAATTATTGTTGTT 57.892 29.630 7.05 0.00 0.00 2.83
3970 7592 7.226523 GCTGTCCTTTCCAAAAATTATTGTTGT 59.773 33.333 7.05 0.00 0.00 3.32
3971 7593 7.226325 TGCTGTCCTTTCCAAAAATTATTGTTG 59.774 33.333 1.02 1.02 0.00 3.33
3972 7594 7.278875 TGCTGTCCTTTCCAAAAATTATTGTT 58.721 30.769 0.00 0.00 0.00 2.83
3973 7595 6.825610 TGCTGTCCTTTCCAAAAATTATTGT 58.174 32.000 0.00 0.00 0.00 2.71
3974 7596 7.226325 TGTTGCTGTCCTTTCCAAAAATTATTG 59.774 33.333 0.00 0.00 0.00 1.90
3975 7597 7.278875 TGTTGCTGTCCTTTCCAAAAATTATT 58.721 30.769 0.00 0.00 0.00 1.40
3976 7598 6.825610 TGTTGCTGTCCTTTCCAAAAATTAT 58.174 32.000 0.00 0.00 0.00 1.28
3977 7599 6.227298 TGTTGCTGTCCTTTCCAAAAATTA 57.773 33.333 0.00 0.00 0.00 1.40
3978 7600 5.096443 TGTTGCTGTCCTTTCCAAAAATT 57.904 34.783 0.00 0.00 0.00 1.82
3979 7601 4.751767 TGTTGCTGTCCTTTCCAAAAAT 57.248 36.364 0.00 0.00 0.00 1.82
3980 7602 4.249661 GTTGTTGCTGTCCTTTCCAAAAA 58.750 39.130 0.00 0.00 0.00 1.94
3981 7603 3.259374 TGTTGTTGCTGTCCTTTCCAAAA 59.741 39.130 0.00 0.00 0.00 2.44
3982 7604 2.828520 TGTTGTTGCTGTCCTTTCCAAA 59.171 40.909 0.00 0.00 0.00 3.28
3983 7605 2.451490 TGTTGTTGCTGTCCTTTCCAA 58.549 42.857 0.00 0.00 0.00 3.53
3984 7606 2.136298 TGTTGTTGCTGTCCTTTCCA 57.864 45.000 0.00 0.00 0.00 3.53
3985 7607 3.733443 ATTGTTGTTGCTGTCCTTTCC 57.267 42.857 0.00 0.00 0.00 3.13
3986 7608 8.810652 TTTATTATTGTTGTTGCTGTCCTTTC 57.189 30.769 0.00 0.00 0.00 2.62
3987 7609 9.423061 GATTTATTATTGTTGTTGCTGTCCTTT 57.577 29.630 0.00 0.00 0.00 3.11
3988 7610 8.584157 TGATTTATTATTGTTGTTGCTGTCCTT 58.416 29.630 0.00 0.00 0.00 3.36
3989 7611 8.121305 TGATTTATTATTGTTGTTGCTGTCCT 57.879 30.769 0.00 0.00 0.00 3.85
3990 7612 8.647226 GTTGATTTATTATTGTTGTTGCTGTCC 58.353 33.333 0.00 0.00 0.00 4.02
3991 7613 9.410556 AGTTGATTTATTATTGTTGTTGCTGTC 57.589 29.630 0.00 0.00 0.00 3.51
4019 7641 4.385825 TGAGACAACCGTAAGCAAAATCT 58.614 39.130 0.00 0.00 0.00 2.40
4022 7644 3.690139 TGTTGAGACAACCGTAAGCAAAA 59.310 39.130 11.25 0.00 31.49 2.44
4052 7674 2.099756 GGCCATGCATCTGTTTCTTACC 59.900 50.000 0.00 0.00 0.00 2.85
4053 7675 2.754552 TGGCCATGCATCTGTTTCTTAC 59.245 45.455 0.00 0.00 0.00 2.34
4060 7682 0.901114 TTGCTTGGCCATGCATCTGT 60.901 50.000 37.93 0.00 40.45 3.41
4103 7725 1.862815 GCTTCACTTGCAAGCAGTGTG 60.863 52.381 26.27 16.86 44.87 3.82
4176 7798 6.247727 ACACATACACACGCAAAATTGATA 57.752 33.333 0.00 0.00 0.00 2.15
4180 7802 6.494893 AGATACACATACACACGCAAAATT 57.505 33.333 0.00 0.00 0.00 1.82
4187 7809 2.117137 GCCGAGATACACATACACACG 58.883 52.381 0.00 0.00 0.00 4.49
4195 7817 0.892755 AAACGGAGCCGAGATACACA 59.107 50.000 16.83 0.00 42.83 3.72
4230 7852 1.480219 GCAGTCGAATCGGCCGTTAG 61.480 60.000 27.15 17.97 28.67 2.34
4231 7853 1.517694 GCAGTCGAATCGGCCGTTA 60.518 57.895 27.15 7.11 28.67 3.18
4232 7854 2.781595 AAGCAGTCGAATCGGCCGTT 62.782 55.000 27.15 18.59 28.67 4.44
4233 7855 2.781595 AAAGCAGTCGAATCGGCCGT 62.782 55.000 27.15 6.47 28.67 5.68
4234 7856 2.025359 GAAAGCAGTCGAATCGGCCG 62.025 60.000 22.12 22.12 28.67 6.13
4235 7857 1.019278 TGAAAGCAGTCGAATCGGCC 61.019 55.000 2.72 0.00 28.67 6.13
4236 7858 0.095417 GTGAAAGCAGTCGAATCGGC 59.905 55.000 0.00 0.00 0.00 5.54
4237 7859 1.428448 TGTGAAAGCAGTCGAATCGG 58.572 50.000 1.76 0.00 0.00 4.18
4238 7860 2.718789 CGTTGTGAAAGCAGTCGAATCG 60.719 50.000 0.00 0.00 0.00 3.34
4242 7864 0.179094 ACCGTTGTGAAAGCAGTCGA 60.179 50.000 0.00 0.00 0.00 4.20
4243 7865 1.493772 TACCGTTGTGAAAGCAGTCG 58.506 50.000 0.00 0.00 0.00 4.18
4244 7866 4.449743 TGTTATACCGTTGTGAAAGCAGTC 59.550 41.667 0.00 0.00 0.00 3.51
4245 7867 4.382291 TGTTATACCGTTGTGAAAGCAGT 58.618 39.130 0.00 0.00 0.00 4.40
4246 7868 5.545658 ATGTTATACCGTTGTGAAAGCAG 57.454 39.130 0.00 0.00 0.00 4.24
4247 7869 8.896320 ATATATGTTATACCGTTGTGAAAGCA 57.104 30.769 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.