Multiple sequence alignment - TraesCS5D01G205500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G205500 chr5D 100.000 4277 0 0 1 4277 311355216 311359492 0.000000e+00 7899.0
1 TraesCS5D01G205500 chr5B 95.189 3097 97 23 773 3848 357155712 357158777 0.000000e+00 4846.0
2 TraesCS5D01G205500 chr5B 89.527 783 58 15 1 767 357133777 357134551 0.000000e+00 970.0
3 TraesCS5D01G205500 chr5B 96.078 51 2 0 4227 4277 357158941 357158991 2.740000e-12 84.2
4 TraesCS5D01G205500 chr5A 95.018 2188 78 15 744 2906 404558688 404560869 0.000000e+00 3408.0
5 TraesCS5D01G205500 chr5A 94.632 950 32 14 2905 3848 404561127 404562063 0.000000e+00 1454.0
6 TraesCS5D01G205500 chr5A 86.318 402 41 11 2 393 404557666 404558063 3.950000e-115 425.0
7 TraesCS5D01G205500 chr5A 77.716 359 31 19 430 760 404558394 404558731 1.580000e-39 174.0
8 TraesCS5D01G205500 chr2D 85.417 96 8 3 561 656 54698647 54698736 1.270000e-15 95.3
9 TraesCS5D01G205500 chr2B 81.651 109 13 7 563 667 713929697 713929592 2.740000e-12 84.2
10 TraesCS5D01G205500 chr4D 96.970 33 1 0 613 645 69125648 69125616 5.970000e-04 56.5
11 TraesCS5D01G205500 chr6B 90.476 42 3 1 614 654 489718005 489717964 2.000000e-03 54.7
12 TraesCS5D01G205500 chr6D 100.000 28 0 0 614 641 331253914 331253941 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G205500 chr5D 311355216 311359492 4276 False 7899.00 7899 100.0000 1 4277 1 chr5D.!!$F1 4276
1 TraesCS5D01G205500 chr5B 357155712 357158991 3279 False 2465.10 4846 95.6335 773 4277 2 chr5B.!!$F2 3504
2 TraesCS5D01G205500 chr5B 357133777 357134551 774 False 970.00 970 89.5270 1 767 1 chr5B.!!$F1 766
3 TraesCS5D01G205500 chr5A 404557666 404562063 4397 False 1365.25 3408 88.4210 2 3848 4 chr5A.!!$F1 3846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 431 1.249407 TTTTAACATGGGGCGACACC 58.751 50.000 0.0 0.0 37.93 4.16 F
1125 1481 1.142097 GCGTTCTGACTAGGCCCTC 59.858 63.158 0.0 0.0 0.00 4.30 F
1352 1708 3.734902 GCCTTCGCTGATTTATTTGTGGG 60.735 47.826 0.0 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1823 0.451628 CAACTCGATTGTGCACAGCG 60.452 55.0 27.82 27.82 33.20 5.18 R
2242 2615 2.422479 CTCACGGTATCTTCGGAAGACA 59.578 50.0 21.86 8.74 41.01 3.41 R
3342 3984 2.031683 GCCGGTACATGCAATTGTAGAC 59.968 50.0 7.40 2.72 32.92 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.368003 TCACCCGGAGACATACCC 57.632 61.111 0.73 0.00 0.00 3.69
68 70 7.069826 AGACATCCTTTCCTTCTCTAGAGATTG 59.930 40.741 22.93 17.35 37.29 2.67
112 116 2.718456 AGTACCATTGGCCATATCCCT 58.282 47.619 6.09 0.00 0.00 4.20
122 128 3.461458 TGGCCATATCCCTTATTGTCACA 59.539 43.478 0.00 0.00 0.00 3.58
251 261 3.209410 CATGCCTAGAGTCCATGTTTCC 58.791 50.000 0.00 0.00 33.46 3.13
256 266 5.013704 TGCCTAGAGTCCATGTTTCCTTTAA 59.986 40.000 0.00 0.00 0.00 1.52
279 289 9.847224 TTAAGGATATCTGATTTGTAAAGGTCC 57.153 33.333 2.05 0.00 0.00 4.46
295 308 4.649088 AGGTCCTTTTTGTAAGTTGCAC 57.351 40.909 0.00 0.00 0.00 4.57
296 309 4.020543 AGGTCCTTTTTGTAAGTTGCACA 58.979 39.130 0.00 0.00 0.00 4.57
297 310 4.464597 AGGTCCTTTTTGTAAGTTGCACAA 59.535 37.500 0.00 0.00 34.18 3.33
342 355 6.659824 TCAATGGAAATTCCTACTCTTACCC 58.340 40.000 13.78 0.00 37.46 3.69
369 382 3.729862 AACTAGCTAATAGTCCGTGCC 57.270 47.619 0.00 0.00 44.26 5.01
372 386 2.604046 AGCTAATAGTCCGTGCCTTG 57.396 50.000 0.00 0.00 0.00 3.61
414 431 1.249407 TTTTAACATGGGGCGACACC 58.751 50.000 0.00 0.00 37.93 4.16
418 435 2.124736 CATGGGGCGACACCGATT 60.125 61.111 0.00 0.00 40.62 3.34
448 768 1.784358 TATCCCTTACAGGACCACCG 58.216 55.000 0.00 0.00 39.24 4.94
520 850 3.750371 TGATTTGATTGTCCTTGTCCGT 58.250 40.909 0.00 0.00 0.00 4.69
600 943 4.155099 TGCAATTACCTTACACCATCAACG 59.845 41.667 0.00 0.00 0.00 4.10
601 944 4.438200 GCAATTACCTTACACCATCAACGG 60.438 45.833 0.00 0.00 0.00 4.44
602 945 4.563140 ATTACCTTACACCATCAACGGT 57.437 40.909 0.00 0.00 41.07 4.83
608 951 4.319133 ACCATCAACGGTGGCATC 57.681 55.556 0.00 0.00 40.49 3.91
652 995 5.234752 TGATTGAGTTAACGCACTACATGT 58.765 37.500 11.85 2.69 0.00 3.21
693 1049 2.096248 GGACCACAAACAACTTCACCA 58.904 47.619 0.00 0.00 0.00 4.17
790 1146 4.499037 GGTGTACAACCCAAATCAACTC 57.501 45.455 0.00 0.00 44.02 3.01
797 1153 6.232581 ACAACCCAAATCAACTCAAAATGA 57.767 33.333 0.00 0.00 0.00 2.57
881 1237 1.307343 ATCACCTGCCTGCCTACCT 60.307 57.895 0.00 0.00 0.00 3.08
1063 1419 3.991051 CCCGTCGGTGAGCACAGT 61.991 66.667 11.06 0.00 0.00 3.55
1066 1422 1.442857 CGTCGGTGAGCACAGTCTC 60.443 63.158 2.75 0.00 0.00 3.36
1125 1481 1.142097 GCGTTCTGACTAGGCCCTC 59.858 63.158 0.00 0.00 0.00 4.30
1210 1566 4.980805 GTCTCGCCGTTGCCACCA 62.981 66.667 0.00 0.00 0.00 4.17
1348 1704 5.230726 GTGAATGCCTTCGCTGATTTATTTG 59.769 40.000 7.90 0.00 38.57 2.32
1349 1705 4.989279 ATGCCTTCGCTGATTTATTTGT 57.011 36.364 0.00 0.00 35.36 2.83
1352 1708 3.734902 GCCTTCGCTGATTTATTTGTGGG 60.735 47.826 0.00 0.00 0.00 4.61
1384 1740 5.046520 GGATTGGATGGTACTGTAGGTATCC 60.047 48.000 13.76 13.76 30.79 2.59
1415 1773 5.450818 AAAAAGAGGATGCCATGGTACTA 57.549 39.130 14.67 0.00 0.00 1.82
1427 1785 4.164981 CCATGGTACTATAGGTGGCCTTA 58.835 47.826 3.32 0.00 34.61 2.69
1462 1820 4.994852 GCACGAGGCAAGGAATAATATGTA 59.005 41.667 0.00 0.00 43.97 2.29
1465 1823 5.643777 ACGAGGCAAGGAATAATATGTATGC 59.356 40.000 0.00 0.00 0.00 3.14
1509 1867 6.255950 GCTTTCTGTTGATTAATAACCGGTC 58.744 40.000 8.04 0.00 0.00 4.79
1528 1886 3.823873 GGTCATGTTAATTGGTGGTGACA 59.176 43.478 0.00 0.00 36.97 3.58
1816 2189 9.198837 GGCTGAAATAGAAGTTAGTATTCTAGC 57.801 37.037 12.23 12.23 41.31 3.42
2205 2578 7.281100 CCTTTGTGTTTATCTGAGGACCTTATC 59.719 40.741 0.00 0.00 0.00 1.75
2692 3065 1.064758 TGTTTCAGTCCTGTGGTTGCT 60.065 47.619 0.00 0.00 0.00 3.91
2745 3123 5.186797 ACTTGTTGATTCACAAAGGACCAAA 59.813 36.000 10.65 0.00 40.36 3.28
2823 3201 0.539051 GCCCTGTGCATCTGTCTACT 59.461 55.000 0.00 0.00 40.77 2.57
2861 3241 5.747197 CAGCTGAGAATTCAATAACAATGGC 59.253 40.000 8.42 1.09 31.69 4.40
2870 3250 5.402997 TCAATAACAATGGCAATGCAAGA 57.597 34.783 7.79 0.00 0.00 3.02
2887 3267 5.211973 TGCAAGACCTGATAAGTCCTAGAT 58.788 41.667 0.00 0.00 34.67 1.98
2924 3563 9.036980 ACTTATTAGAAGTTAGAAGAGCTTCCA 57.963 33.333 6.61 0.00 40.33 3.53
2925 3564 9.528018 CTTATTAGAAGTTAGAAGAGCTTCCAG 57.472 37.037 6.61 0.00 40.33 3.86
2926 3565 4.200838 AGAAGTTAGAAGAGCTTCCAGC 57.799 45.455 6.61 0.00 42.84 4.85
2937 3576 2.252976 GCTTCCAGCTTAGGGATCAG 57.747 55.000 0.00 0.00 38.45 2.90
2938 3577 1.488393 GCTTCCAGCTTAGGGATCAGT 59.512 52.381 0.00 0.00 38.45 3.41
3042 3684 2.957491 AGAACCTTCTGAGAGCATCG 57.043 50.000 0.00 0.00 36.66 3.84
3096 3738 7.147846 CCAATGCCTTGACTTTTTATCCATAGT 60.148 37.037 2.97 0.00 34.04 2.12
3342 3984 7.226325 TGGAAAATTTTGGCAGTTACTGAAATG 59.774 33.333 17.40 0.00 32.44 2.32
3415 4058 0.613853 TCAGGGTAGAGACAACCGGG 60.614 60.000 6.32 0.00 37.93 5.73
3622 4265 5.125356 TGATGTGGAAATGATGTAGCGAAT 58.875 37.500 0.00 0.00 0.00 3.34
3693 4336 5.048504 ACAGTCACAAATGTTATGGCAAGAG 60.049 40.000 0.00 0.00 0.00 2.85
3722 4365 4.383010 CCAAAATGTTCTGGGGATAAAGCC 60.383 45.833 0.00 0.00 0.00 4.35
3790 4433 7.334671 GGGTACACTGTTTGGAATTTTGAAAAA 59.665 33.333 0.00 0.00 0.00 1.94
3859 4569 8.186178 AGTAAGTTAAGTATCAAATGACTGCG 57.814 34.615 0.00 0.00 0.00 5.18
3860 4570 5.470845 AGTTAAGTATCAAATGACTGCGC 57.529 39.130 0.00 0.00 0.00 6.09
3864 4574 4.764679 AGTATCAAATGACTGCGCAAAA 57.235 36.364 13.05 0.00 0.00 2.44
3882 4592 4.560108 GCAAAATTGATCTGGACTTGCTGT 60.560 41.667 10.73 0.00 35.85 4.40
3888 4598 0.836606 TCTGGACTTGCTGTGGTTGA 59.163 50.000 0.00 0.00 0.00 3.18
3896 4606 1.578897 TGCTGTGGTTGAGCCCTATA 58.421 50.000 0.00 0.00 35.43 1.31
3897 4607 2.126882 TGCTGTGGTTGAGCCCTATAT 58.873 47.619 0.00 0.00 35.43 0.86
3898 4608 3.313791 TGCTGTGGTTGAGCCCTATATA 58.686 45.455 0.00 0.00 35.43 0.86
3899 4609 3.909995 TGCTGTGGTTGAGCCCTATATAT 59.090 43.478 0.00 0.00 35.43 0.86
3900 4610 4.020218 TGCTGTGGTTGAGCCCTATATATC 60.020 45.833 0.00 0.00 35.43 1.63
3901 4611 4.020218 GCTGTGGTTGAGCCCTATATATCA 60.020 45.833 0.00 0.00 36.04 2.15
3902 4612 5.338708 GCTGTGGTTGAGCCCTATATATCAT 60.339 44.000 0.00 0.00 36.04 2.45
3903 4613 6.127054 GCTGTGGTTGAGCCCTATATATCATA 60.127 42.308 0.00 0.00 36.04 2.15
3904 4614 7.423844 TGTGGTTGAGCCCTATATATCATAG 57.576 40.000 0.00 0.00 36.04 2.23
3905 4615 6.127054 TGTGGTTGAGCCCTATATATCATAGC 60.127 42.308 0.00 0.00 36.04 2.97
3906 4616 5.963865 TGGTTGAGCCCTATATATCATAGCA 59.036 40.000 0.00 0.00 36.04 3.49
3907 4617 6.616959 TGGTTGAGCCCTATATATCATAGCAT 59.383 38.462 0.00 0.00 36.04 3.79
3908 4618 7.127801 TGGTTGAGCCCTATATATCATAGCATT 59.872 37.037 0.00 0.00 36.04 3.56
3909 4619 7.995488 GGTTGAGCCCTATATATCATAGCATTT 59.005 37.037 0.00 0.00 0.00 2.32
3910 4620 8.834465 GTTGAGCCCTATATATCATAGCATTTG 58.166 37.037 0.00 0.00 0.00 2.32
3911 4621 8.322905 TGAGCCCTATATATCATAGCATTTGA 57.677 34.615 0.00 0.00 0.00 2.69
3912 4622 8.942033 TGAGCCCTATATATCATAGCATTTGAT 58.058 33.333 0.00 0.00 37.56 2.57
3925 4635 8.347771 TCATAGCATTTGATATTTCTGAGTTGC 58.652 33.333 0.00 0.00 0.00 4.17
3926 4636 5.899299 AGCATTTGATATTTCTGAGTTGCC 58.101 37.500 0.00 0.00 0.00 4.52
3927 4637 5.045872 GCATTTGATATTTCTGAGTTGCCC 58.954 41.667 0.00 0.00 0.00 5.36
3928 4638 5.594926 CATTTGATATTTCTGAGTTGCCCC 58.405 41.667 0.00 0.00 0.00 5.80
3929 4639 2.917933 TGATATTTCTGAGTTGCCCCG 58.082 47.619 0.00 0.00 0.00 5.73
3930 4640 2.238646 TGATATTTCTGAGTTGCCCCGT 59.761 45.455 0.00 0.00 0.00 5.28
3931 4641 3.452990 TGATATTTCTGAGTTGCCCCGTA 59.547 43.478 0.00 0.00 0.00 4.02
3932 4642 2.871096 ATTTCTGAGTTGCCCCGTAA 57.129 45.000 0.00 0.00 0.00 3.18
3933 4643 2.871096 TTTCTGAGTTGCCCCGTAAT 57.129 45.000 0.00 0.00 0.00 1.89
3934 4644 3.985019 TTTCTGAGTTGCCCCGTAATA 57.015 42.857 0.00 0.00 0.00 0.98
3935 4645 3.536956 TTCTGAGTTGCCCCGTAATAG 57.463 47.619 0.00 0.00 0.00 1.73
3936 4646 2.742348 TCTGAGTTGCCCCGTAATAGA 58.258 47.619 0.00 0.00 0.00 1.98
3937 4647 3.101437 TCTGAGTTGCCCCGTAATAGAA 58.899 45.455 0.00 0.00 0.00 2.10
3938 4648 3.709653 TCTGAGTTGCCCCGTAATAGAAT 59.290 43.478 0.00 0.00 0.00 2.40
3939 4649 4.163458 TCTGAGTTGCCCCGTAATAGAATT 59.837 41.667 0.00 0.00 0.00 2.17
3940 4650 5.364446 TCTGAGTTGCCCCGTAATAGAATTA 59.636 40.000 0.00 0.00 0.00 1.40
3941 4651 6.042781 TCTGAGTTGCCCCGTAATAGAATTAT 59.957 38.462 0.00 0.00 0.00 1.28
3942 4652 7.233962 TCTGAGTTGCCCCGTAATAGAATTATA 59.766 37.037 0.00 0.00 0.00 0.98
3943 4653 7.383687 TGAGTTGCCCCGTAATAGAATTATAG 58.616 38.462 0.00 0.00 0.00 1.31
3944 4654 7.233962 TGAGTTGCCCCGTAATAGAATTATAGA 59.766 37.037 0.00 0.00 0.00 1.98
3945 4655 8.147244 AGTTGCCCCGTAATAGAATTATAGAT 57.853 34.615 0.00 0.00 0.00 1.98
3946 4656 9.263446 AGTTGCCCCGTAATAGAATTATAGATA 57.737 33.333 0.00 0.00 0.00 1.98
3947 4657 9.530633 GTTGCCCCGTAATAGAATTATAGATAG 57.469 37.037 0.00 0.00 0.00 2.08
3948 4658 9.483489 TTGCCCCGTAATAGAATTATAGATAGA 57.517 33.333 0.00 0.00 0.00 1.98
3949 4659 9.483489 TGCCCCGTAATAGAATTATAGATAGAA 57.517 33.333 0.00 0.00 0.00 2.10
3979 4689 0.617249 AGGAGAGTGAAGCCCTGAGG 60.617 60.000 0.00 0.00 0.00 3.86
3980 4690 0.616111 GGAGAGTGAAGCCCTGAGGA 60.616 60.000 0.00 0.00 33.47 3.71
3981 4691 0.823460 GAGAGTGAAGCCCTGAGGAG 59.177 60.000 0.00 0.00 33.47 3.69
3984 4694 1.220477 GTGAAGCCCTGAGGAGCTC 59.780 63.158 13.62 4.71 38.74 4.09
3999 4709 3.068691 CTCGAGACGGGGAAGCCA 61.069 66.667 6.58 0.00 0.00 4.75
4001 4711 2.202932 CGAGACGGGGAAGCCATG 60.203 66.667 0.00 0.00 0.00 3.66
4004 4714 2.190578 GACGGGGAAGCCATGGAG 59.809 66.667 18.40 0.00 0.00 3.86
4010 4720 2.054453 GGAAGCCATGGAGTTGCCC 61.054 63.158 18.40 2.66 34.97 5.36
4011 4721 1.304381 GAAGCCATGGAGTTGCCCA 60.304 57.895 18.40 0.00 41.05 5.36
4012 4722 1.598701 GAAGCCATGGAGTTGCCCAC 61.599 60.000 18.40 0.00 39.34 4.61
4013 4723 3.443045 GCCATGGAGTTGCCCACG 61.443 66.667 18.40 0.00 39.34 4.94
4014 4724 2.350895 CCATGGAGTTGCCCACGA 59.649 61.111 5.56 0.00 39.34 4.35
4015 4725 1.746615 CCATGGAGTTGCCCACGAG 60.747 63.158 5.56 0.00 39.34 4.18
4016 4726 1.746615 CATGGAGTTGCCCACGAGG 60.747 63.158 0.00 0.00 39.34 4.63
4028 4738 3.060866 ACGAGGGTGAGCCAAGAC 58.939 61.111 2.50 0.00 36.17 3.01
4029 4739 2.266055 CGAGGGTGAGCCAAGACC 59.734 66.667 2.50 0.00 36.17 3.85
4030 4740 2.286523 CGAGGGTGAGCCAAGACCT 61.287 63.158 2.50 0.00 36.17 3.85
4031 4741 1.831652 CGAGGGTGAGCCAAGACCTT 61.832 60.000 2.50 0.00 36.17 3.50
4032 4742 0.322008 GAGGGTGAGCCAAGACCTTG 60.322 60.000 2.50 2.89 40.13 3.61
4033 4743 1.062488 AGGGTGAGCCAAGACCTTGT 61.062 55.000 2.50 0.00 38.85 3.16
4034 4744 0.178990 GGGTGAGCCAAGACCTTGTT 60.179 55.000 8.72 0.00 38.85 2.83
4035 4745 0.954452 GGTGAGCCAAGACCTTGTTG 59.046 55.000 8.72 0.00 38.85 3.33
4036 4746 0.954452 GTGAGCCAAGACCTTGTTGG 59.046 55.000 8.72 0.00 46.36 3.77
4037 4747 0.843309 TGAGCCAAGACCTTGTTGGA 59.157 50.000 6.28 0.00 46.53 3.53
4038 4748 1.425066 TGAGCCAAGACCTTGTTGGAT 59.575 47.619 6.28 0.00 46.35 3.41
4039 4749 1.815003 GAGCCAAGACCTTGTTGGATG 59.185 52.381 6.28 0.00 43.73 3.51
4040 4750 0.244721 GCCAAGACCTTGTTGGATGC 59.755 55.000 6.28 0.91 46.53 3.91
4041 4751 1.915141 CCAAGACCTTGTTGGATGCT 58.085 50.000 8.72 0.00 46.53 3.79
4042 4752 1.542915 CCAAGACCTTGTTGGATGCTG 59.457 52.381 8.72 0.00 46.53 4.41
4043 4753 1.542915 CAAGACCTTGTTGGATGCTGG 59.457 52.381 1.75 0.00 39.71 4.85
4044 4754 0.038744 AGACCTTGTTGGATGCTGGG 59.961 55.000 0.00 0.00 39.71 4.45
4045 4755 0.038166 GACCTTGTTGGATGCTGGGA 59.962 55.000 0.00 0.00 39.71 4.37
4046 4756 0.251341 ACCTTGTTGGATGCTGGGAC 60.251 55.000 0.00 0.00 39.71 4.46
4047 4757 1.308069 CCTTGTTGGATGCTGGGACG 61.308 60.000 0.00 0.00 38.35 4.79
4048 4758 0.321564 CTTGTTGGATGCTGGGACGA 60.322 55.000 0.00 0.00 0.00 4.20
4049 4759 0.605319 TTGTTGGATGCTGGGACGAC 60.605 55.000 0.00 0.00 0.00 4.34
4050 4760 1.003839 GTTGGATGCTGGGACGACA 60.004 57.895 0.00 0.00 0.00 4.35
4051 4761 1.003839 TTGGATGCTGGGACGACAC 60.004 57.895 0.00 0.00 0.00 3.67
4052 4762 2.509336 GGATGCTGGGACGACACG 60.509 66.667 0.00 0.00 0.00 4.49
4053 4763 2.261671 GATGCTGGGACGACACGT 59.738 61.111 0.00 0.00 45.10 4.49
4062 4772 2.726274 ACGACACGTCTCACCACC 59.274 61.111 0.00 0.00 33.69 4.61
4063 4773 2.122797 ACGACACGTCTCACCACCA 61.123 57.895 0.00 0.00 33.69 4.17
4064 4774 1.066752 CGACACGTCTCACCACCAA 59.933 57.895 0.00 0.00 0.00 3.67
4065 4775 0.939577 CGACACGTCTCACCACCAAG 60.940 60.000 0.00 0.00 0.00 3.61
4066 4776 0.600255 GACACGTCTCACCACCAAGG 60.600 60.000 0.00 0.00 45.67 3.61
4067 4777 1.301716 CACGTCTCACCACCAAGGG 60.302 63.158 0.00 0.00 43.89 3.95
4068 4778 2.347490 CGTCTCACCACCAAGGGG 59.653 66.667 0.00 0.00 44.73 4.79
4077 4787 3.288099 CACCAAGGGGAGGAAATGG 57.712 57.895 0.00 0.00 38.05 3.16
4078 4788 0.324645 CACCAAGGGGAGGAAATGGG 60.325 60.000 0.00 0.00 38.05 4.00
4079 4789 1.311059 CCAAGGGGAGGAAATGGGG 59.689 63.158 0.00 0.00 35.59 4.96
4080 4790 1.518431 CCAAGGGGAGGAAATGGGGT 61.518 60.000 0.00 0.00 35.59 4.95
4081 4791 0.033109 CAAGGGGAGGAAATGGGGTC 60.033 60.000 0.00 0.00 0.00 4.46
4082 4792 0.479589 AAGGGGAGGAAATGGGGTCA 60.480 55.000 0.00 0.00 0.00 4.02
4083 4793 0.254299 AGGGGAGGAAATGGGGTCAT 60.254 55.000 0.00 0.00 34.56 3.06
4084 4794 0.636647 GGGGAGGAAATGGGGTCATT 59.363 55.000 0.00 0.00 44.77 2.57
4085 4795 1.689258 GGGGAGGAAATGGGGTCATTG 60.689 57.143 0.00 0.00 42.29 2.82
4086 4796 1.689258 GGGAGGAAATGGGGTCATTGG 60.689 57.143 0.00 0.00 42.29 3.16
4087 4797 1.007118 GGAGGAAATGGGGTCATTGGT 59.993 52.381 0.00 0.00 42.29 3.67
4088 4798 2.559705 GGAGGAAATGGGGTCATTGGTT 60.560 50.000 0.00 0.00 42.29 3.67
4089 4799 2.760650 GAGGAAATGGGGTCATTGGTTC 59.239 50.000 0.00 0.00 42.29 3.62
4090 4800 2.111613 AGGAAATGGGGTCATTGGTTCA 59.888 45.455 0.00 0.00 42.29 3.18
4091 4801 2.497273 GGAAATGGGGTCATTGGTTCAG 59.503 50.000 0.00 0.00 42.29 3.02
4092 4802 2.236489 AATGGGGTCATTGGTTCAGG 57.764 50.000 0.00 0.00 41.62 3.86
4093 4803 1.084018 ATGGGGTCATTGGTTCAGGT 58.916 50.000 0.00 0.00 0.00 4.00
4094 4804 0.112218 TGGGGTCATTGGTTCAGGTG 59.888 55.000 0.00 0.00 0.00 4.00
4095 4805 0.611896 GGGGTCATTGGTTCAGGTGG 60.612 60.000 0.00 0.00 0.00 4.61
4096 4806 0.112412 GGGTCATTGGTTCAGGTGGT 59.888 55.000 0.00 0.00 0.00 4.16
4097 4807 1.480498 GGGTCATTGGTTCAGGTGGTT 60.480 52.381 0.00 0.00 0.00 3.67
4098 4808 2.316108 GGTCATTGGTTCAGGTGGTTT 58.684 47.619 0.00 0.00 0.00 3.27
4099 4809 2.698274 GGTCATTGGTTCAGGTGGTTTT 59.302 45.455 0.00 0.00 0.00 2.43
4100 4810 3.133901 GGTCATTGGTTCAGGTGGTTTTT 59.866 43.478 0.00 0.00 0.00 1.94
4125 4835 9.770097 TTTCATCCACTCATATTTGATAGACTC 57.230 33.333 0.00 0.00 0.00 3.36
4126 4836 7.901029 TCATCCACTCATATTTGATAGACTCC 58.099 38.462 0.00 0.00 0.00 3.85
4127 4837 6.332735 TCCACTCATATTTGATAGACTCCG 57.667 41.667 0.00 0.00 0.00 4.63
4128 4838 6.068670 TCCACTCATATTTGATAGACTCCGA 58.931 40.000 0.00 0.00 0.00 4.55
4129 4839 6.207614 TCCACTCATATTTGATAGACTCCGAG 59.792 42.308 0.00 0.00 0.00 4.63
4130 4840 5.861251 CACTCATATTTGATAGACTCCGAGC 59.139 44.000 0.00 0.00 0.00 5.03
4131 4841 5.772672 ACTCATATTTGATAGACTCCGAGCT 59.227 40.000 0.00 0.00 0.00 4.09
4132 4842 6.266558 ACTCATATTTGATAGACTCCGAGCTT 59.733 38.462 0.00 0.00 0.00 3.74
4133 4843 6.450545 TCATATTTGATAGACTCCGAGCTTG 58.549 40.000 0.00 0.00 0.00 4.01
4134 4844 6.265422 TCATATTTGATAGACTCCGAGCTTGA 59.735 38.462 1.22 0.00 0.00 3.02
4135 4845 4.377839 TTTGATAGACTCCGAGCTTGAG 57.622 45.455 1.22 7.60 35.92 3.02
4136 4846 3.283259 TGATAGACTCCGAGCTTGAGA 57.717 47.619 18.07 6.59 33.95 3.27
4137 4847 3.826524 TGATAGACTCCGAGCTTGAGAT 58.173 45.455 18.07 10.12 33.95 2.75
4138 4848 4.974399 TGATAGACTCCGAGCTTGAGATA 58.026 43.478 18.07 11.55 33.95 1.98
4139 4849 5.000591 TGATAGACTCCGAGCTTGAGATAG 58.999 45.833 18.07 6.23 33.95 2.08
4140 4850 2.582052 AGACTCCGAGCTTGAGATAGG 58.418 52.381 18.07 1.27 33.95 2.57
4141 4851 1.611491 GACTCCGAGCTTGAGATAGGG 59.389 57.143 18.07 0.00 33.95 3.53
4142 4852 1.215673 ACTCCGAGCTTGAGATAGGGA 59.784 52.381 18.07 0.00 33.95 4.20
4143 4853 2.158385 ACTCCGAGCTTGAGATAGGGAT 60.158 50.000 18.07 0.00 33.95 3.85
4144 4854 2.230992 CTCCGAGCTTGAGATAGGGATG 59.769 54.545 1.22 0.00 31.26 3.51
4145 4855 1.967066 CCGAGCTTGAGATAGGGATGT 59.033 52.381 1.22 0.00 0.00 3.06
4146 4856 2.366916 CCGAGCTTGAGATAGGGATGTT 59.633 50.000 1.22 0.00 0.00 2.71
4147 4857 3.388308 CGAGCTTGAGATAGGGATGTTG 58.612 50.000 0.00 0.00 0.00 3.33
4148 4858 3.137533 GAGCTTGAGATAGGGATGTTGC 58.862 50.000 0.00 0.00 0.00 4.17
4149 4859 2.776536 AGCTTGAGATAGGGATGTTGCT 59.223 45.455 0.00 0.00 0.00 3.91
4150 4860 2.877168 GCTTGAGATAGGGATGTTGCTG 59.123 50.000 0.00 0.00 0.00 4.41
4151 4861 2.627515 TGAGATAGGGATGTTGCTGC 57.372 50.000 0.00 0.00 0.00 5.25
4152 4862 2.121948 TGAGATAGGGATGTTGCTGCT 58.878 47.619 0.00 0.00 0.00 4.24
4153 4863 2.158856 TGAGATAGGGATGTTGCTGCTG 60.159 50.000 0.00 0.00 0.00 4.41
4154 4864 1.142465 AGATAGGGATGTTGCTGCTGG 59.858 52.381 0.00 0.00 0.00 4.85
4155 4865 0.466922 ATAGGGATGTTGCTGCTGGC 60.467 55.000 0.00 0.00 42.22 4.85
4156 4866 2.556840 TAGGGATGTTGCTGCTGGCC 62.557 60.000 0.00 0.00 40.92 5.36
4157 4867 3.818787 GGATGTTGCTGCTGGCCG 61.819 66.667 0.00 0.00 40.92 6.13
4158 4868 3.058160 GATGTTGCTGCTGGCCGT 61.058 61.111 0.00 0.00 40.92 5.68
4159 4869 3.332493 GATGTTGCTGCTGGCCGTG 62.332 63.158 0.00 0.00 40.92 4.94
4165 4875 4.624364 CTGCTGGCCGTGGTGTCA 62.624 66.667 0.00 0.00 0.00 3.58
4166 4876 3.907260 CTGCTGGCCGTGGTGTCAT 62.907 63.158 0.00 0.00 0.00 3.06
4167 4877 2.672996 GCTGGCCGTGGTGTCATT 60.673 61.111 0.00 0.00 0.00 2.57
4168 4878 2.268076 GCTGGCCGTGGTGTCATTT 61.268 57.895 0.00 0.00 0.00 2.32
4169 4879 0.958382 GCTGGCCGTGGTGTCATTTA 60.958 55.000 0.00 0.00 0.00 1.40
4170 4880 0.802494 CTGGCCGTGGTGTCATTTAC 59.198 55.000 0.00 0.00 0.00 2.01
4171 4881 0.108774 TGGCCGTGGTGTCATTTACA 59.891 50.000 0.00 0.00 35.06 2.41
4172 4882 1.240256 GGCCGTGGTGTCATTTACAA 58.760 50.000 0.00 0.00 40.63 2.41
4173 4883 1.199097 GGCCGTGGTGTCATTTACAAG 59.801 52.381 0.00 0.00 40.63 3.16
4174 4884 1.199097 GCCGTGGTGTCATTTACAAGG 59.801 52.381 0.00 0.00 40.63 3.61
4175 4885 2.773487 CCGTGGTGTCATTTACAAGGA 58.227 47.619 0.00 0.00 40.63 3.36
4176 4886 3.343617 CCGTGGTGTCATTTACAAGGAT 58.656 45.455 0.00 0.00 40.63 3.24
4177 4887 3.126858 CCGTGGTGTCATTTACAAGGATG 59.873 47.826 0.00 0.00 40.63 3.51
4178 4888 4.000325 CGTGGTGTCATTTACAAGGATGA 59.000 43.478 0.00 0.00 40.63 2.92
4179 4889 4.093408 CGTGGTGTCATTTACAAGGATGAG 59.907 45.833 0.00 0.00 40.63 2.90
4180 4890 4.009675 TGGTGTCATTTACAAGGATGAGC 58.990 43.478 0.00 0.00 40.63 4.26
4181 4891 3.378427 GGTGTCATTTACAAGGATGAGCC 59.622 47.826 0.00 0.00 40.63 4.70
4182 4892 4.009675 GTGTCATTTACAAGGATGAGCCA 58.990 43.478 0.00 0.00 40.63 4.75
4183 4893 4.458989 GTGTCATTTACAAGGATGAGCCAA 59.541 41.667 0.00 0.00 40.63 4.52
4184 4894 4.701651 TGTCATTTACAAGGATGAGCCAAG 59.298 41.667 0.00 0.00 34.29 3.61
4185 4895 4.096984 GTCATTTACAAGGATGAGCCAAGG 59.903 45.833 0.00 0.00 40.02 3.61
4186 4896 2.806945 TTACAAGGATGAGCCAAGGG 57.193 50.000 0.00 0.00 40.02 3.95
4187 4897 0.918983 TACAAGGATGAGCCAAGGGG 59.081 55.000 0.00 0.00 40.02 4.79
4197 4907 3.470433 CCAAGGGGCTTGTTTGGG 58.530 61.111 0.00 0.00 39.58 4.12
4198 4908 2.216331 CCAAGGGGCTTGTTTGGGG 61.216 63.158 0.00 0.00 39.58 4.96
4199 4909 2.526624 AAGGGGCTTGTTTGGGGC 60.527 61.111 0.00 0.00 0.00 5.80
4200 4910 4.994756 AGGGGCTTGTTTGGGGCG 62.995 66.667 0.00 0.00 0.00 6.13
4203 4913 4.986708 GGCTTGTTTGGGGCGGGA 62.987 66.667 0.00 0.00 0.00 5.14
4204 4914 2.679996 GCTTGTTTGGGGCGGGAT 60.680 61.111 0.00 0.00 0.00 3.85
4205 4915 3.005540 GCTTGTTTGGGGCGGGATG 62.006 63.158 0.00 0.00 0.00 3.51
4206 4916 1.304052 CTTGTTTGGGGCGGGATGA 60.304 57.895 0.00 0.00 0.00 2.92
4207 4917 1.595093 CTTGTTTGGGGCGGGATGAC 61.595 60.000 0.00 0.00 0.00 3.06
4208 4918 3.131478 GTTTGGGGCGGGATGACG 61.131 66.667 0.00 0.00 0.00 4.35
4209 4919 4.418328 TTTGGGGCGGGATGACGG 62.418 66.667 0.00 0.00 0.00 4.79
4215 4925 4.593864 GCGGGATGACGGGCTCTC 62.594 72.222 0.00 0.00 0.00 3.20
4216 4926 2.835431 CGGGATGACGGGCTCTCT 60.835 66.667 0.00 0.00 0.00 3.10
4217 4927 2.818132 GGGATGACGGGCTCTCTG 59.182 66.667 0.00 0.00 0.00 3.35
4218 4928 2.060980 GGGATGACGGGCTCTCTGT 61.061 63.158 0.00 0.00 37.76 3.41
4219 4929 0.755698 GGGATGACGGGCTCTCTGTA 60.756 60.000 0.00 0.00 34.56 2.74
4220 4930 0.671251 GGATGACGGGCTCTCTGTAG 59.329 60.000 0.00 0.00 34.56 2.74
4221 4931 0.671251 GATGACGGGCTCTCTGTAGG 59.329 60.000 0.00 0.00 34.56 3.18
4222 4932 0.757188 ATGACGGGCTCTCTGTAGGG 60.757 60.000 0.00 0.00 34.56 3.53
4223 4933 2.042843 ACGGGCTCTCTGTAGGGG 60.043 66.667 0.00 0.00 32.15 4.79
4224 4934 2.840102 CGGGCTCTCTGTAGGGGG 60.840 72.222 0.00 0.00 0.00 5.40
4225 4935 2.369001 GGGCTCTCTGTAGGGGGT 59.631 66.667 0.00 0.00 0.00 4.95
4226 4936 1.762858 GGGCTCTCTGTAGGGGGTC 60.763 68.421 0.00 0.00 0.00 4.46
4227 4937 1.762858 GGCTCTCTGTAGGGGGTCC 60.763 68.421 0.00 0.00 0.00 4.46
4239 4949 3.637273 GGGTCCGCTGGTTCAGGT 61.637 66.667 0.00 0.00 31.21 4.00
4245 4955 2.291043 CGCTGGTTCAGGTAGGGGT 61.291 63.158 0.00 0.00 31.21 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.442148 GTATGTCTCCGGGTGAGGC 59.558 63.158 0.00 0.00 46.36 4.70
89 91 2.558359 GGATATGGCCAATGGTACTTGC 59.442 50.000 10.96 0.00 0.00 4.01
122 128 1.523758 GTGGAGGCGACAAAGACATT 58.476 50.000 0.00 0.00 0.00 2.71
151 157 9.097257 CAAAATACCTGTGTCTTGAAATTTTGT 57.903 29.630 0.00 0.00 37.86 2.83
159 165 7.441157 CACTACTTCAAAATACCTGTGTCTTGA 59.559 37.037 0.00 0.00 0.00 3.02
169 175 7.064728 GGACATCTCACACTACTTCAAAATACC 59.935 40.741 0.00 0.00 0.00 2.73
222 231 4.546674 TGGACTCTAGGCATGTGAATCTA 58.453 43.478 0.00 0.00 0.00 1.98
256 266 7.698163 AGGACCTTTACAAATCAGATATCCT 57.302 36.000 0.00 0.00 0.00 3.24
295 308 7.094631 TGATGCTGGAAGAGATTTTGAATTTG 58.905 34.615 0.00 0.00 34.07 2.32
296 309 7.235935 TGATGCTGGAAGAGATTTTGAATTT 57.764 32.000 0.00 0.00 34.07 1.82
297 310 6.845758 TGATGCTGGAAGAGATTTTGAATT 57.154 33.333 0.00 0.00 34.07 2.17
342 355 7.167801 GCACGGACTATTAGCTAGTTTCTTTAG 59.832 40.741 0.00 0.00 40.88 1.85
362 375 3.283684 CCGTTTGCAAGGCACGGA 61.284 61.111 28.93 0.00 46.41 4.69
369 382 1.529226 TGTATGACCCCGTTTGCAAG 58.471 50.000 0.00 0.00 0.00 4.01
372 386 4.911514 AAATATGTATGACCCCGTTTGC 57.088 40.909 0.00 0.00 0.00 3.68
399 413 2.478335 AATCGGTGTCGCCCCATGTT 62.478 55.000 0.00 0.00 36.13 2.71
400 414 2.966732 AATCGGTGTCGCCCCATGT 61.967 57.895 0.00 0.00 36.13 3.21
401 415 2.124736 AATCGGTGTCGCCCCATG 60.125 61.111 0.00 0.00 36.13 3.66
403 417 3.632080 ACAATCGGTGTCGCCCCA 61.632 61.111 0.00 0.00 34.38 4.96
414 431 4.327982 AGGGATATGTCTGACACAATCG 57.672 45.455 13.50 0.00 38.97 3.34
418 435 5.598416 CTGTAAGGGATATGTCTGACACA 57.402 43.478 13.50 0.75 40.18 3.72
489 814 6.748132 AGGACAATCAAATCAAATCGTTTGT 58.252 32.000 9.31 0.00 41.36 2.83
495 820 5.801947 CGGACAAGGACAATCAAATCAAATC 59.198 40.000 0.00 0.00 0.00 2.17
572 915 8.532186 TGATGGTGTAAGGTAATTGCATTAAT 57.468 30.769 2.17 0.00 35.84 1.40
592 935 3.101209 CGATGCCACCGTTGATGG 58.899 61.111 0.00 0.00 40.50 3.51
600 943 1.994779 CAAATCTTTTGCGATGCCACC 59.005 47.619 0.00 0.00 0.00 4.61
601 944 2.945278 TCAAATCTTTTGCGATGCCAC 58.055 42.857 0.00 0.00 0.00 5.01
602 945 3.872511 ATCAAATCTTTTGCGATGCCA 57.127 38.095 0.00 0.00 0.00 4.92
608 951 9.046821 CAATCAAATCAAATCAAATCTTTTGCG 57.953 29.630 0.00 0.00 33.77 4.85
656 999 1.476891 GTCCTATGTCGTGAAGCCTCA 59.523 52.381 0.00 0.00 0.00 3.86
668 1011 4.578928 GTGAAGTTGTTTGTGGTCCTATGT 59.421 41.667 0.00 0.00 0.00 2.29
693 1049 6.014584 GGGTTGTTTCTAAGGATGTTCCATTT 60.015 38.462 0.00 0.00 39.61 2.32
766 1122 5.697067 AGTTGATTTGGGTTGTACACCTAA 58.303 37.500 12.36 10.42 46.38 2.69
767 1123 5.163184 TGAGTTGATTTGGGTTGTACACCTA 60.163 40.000 12.36 5.69 46.38 3.08
768 1124 4.142038 GAGTTGATTTGGGTTGTACACCT 58.858 43.478 12.36 0.00 46.38 4.00
769 1125 3.886505 TGAGTTGATTTGGGTTGTACACC 59.113 43.478 0.00 0.02 46.46 4.16
770 1126 5.508200 TTGAGTTGATTTGGGTTGTACAC 57.492 39.130 0.00 0.00 0.00 2.90
771 1127 6.531503 TTTTGAGTTGATTTGGGTTGTACA 57.468 33.333 0.00 0.00 0.00 2.90
778 1134 7.498570 TCCTTTTTCATTTTGAGTTGATTTGGG 59.501 33.333 0.00 0.00 0.00 4.12
790 1146 7.693536 GCTTTGTTCACTTCCTTTTTCATTTTG 59.306 33.333 0.00 0.00 0.00 2.44
797 1153 3.430236 CGGGCTTTGTTCACTTCCTTTTT 60.430 43.478 0.00 0.00 0.00 1.94
881 1237 1.306970 GAGACGGAGAAGGGGAGGA 59.693 63.158 0.00 0.00 0.00 3.71
1063 1419 0.193574 AGGAGTCAGGGGGTTTGAGA 59.806 55.000 0.00 0.00 0.00 3.27
1066 1422 0.771127 TCAAGGAGTCAGGGGGTTTG 59.229 55.000 0.00 0.00 0.00 2.93
1125 1481 1.171308 CCCAACAGAATCACAGGCAG 58.829 55.000 0.00 0.00 0.00 4.85
1348 1704 3.203040 CCATCCAATCCTATATCCCCCAC 59.797 52.174 0.00 0.00 0.00 4.61
1349 1705 3.181373 ACCATCCAATCCTATATCCCCCA 60.181 47.826 0.00 0.00 0.00 4.96
1352 1708 5.726793 ACAGTACCATCCAATCCTATATCCC 59.273 44.000 0.00 0.00 0.00 3.85
1415 1773 0.463833 GCAACGCTAAGGCCACCTAT 60.464 55.000 5.01 0.00 31.13 2.57
1465 1823 0.451628 CAACTCGATTGTGCACAGCG 60.452 55.000 27.82 27.82 33.20 5.18
1509 1867 4.844998 TGTGTCACCACCAATTAACATG 57.155 40.909 0.00 0.00 41.09 3.21
1528 1886 3.485711 CGCGATCACAATGCAACTTATGT 60.486 43.478 0.00 0.00 0.00 2.29
1672 2039 5.485353 ACTGATATTCTTTCCCAGTGACTCA 59.515 40.000 0.00 0.00 36.80 3.41
2144 2517 4.467769 ACTCTGGGCATTCTTATCAATGG 58.532 43.478 0.00 0.00 34.75 3.16
2205 2578 5.220548 GCAGAGATACACATACACTTTGCTG 60.221 44.000 0.00 0.00 36.34 4.41
2242 2615 2.422479 CTCACGGTATCTTCGGAAGACA 59.578 50.000 21.86 8.74 41.01 3.41
2651 3024 8.638685 AAACATGTCATCAAACAAGAAAAGAG 57.361 30.769 0.00 0.00 31.81 2.85
2745 3123 6.245408 TGGTTAGAACTTAATGGCACTCAAT 58.755 36.000 0.00 0.00 0.00 2.57
2823 3201 5.728637 TCTCAGCTGTCACAGAAATAAGA 57.271 39.130 9.70 1.21 32.44 2.10
2861 3241 4.521146 AGGACTTATCAGGTCTTGCATTG 58.479 43.478 0.00 0.00 34.47 2.82
2870 3250 8.980832 ATATCCAAATCTAGGACTTATCAGGT 57.019 34.615 0.00 0.00 38.13 4.00
2924 3563 2.703007 GTGATCCACTGATCCCTAAGCT 59.297 50.000 0.46 0.00 45.74 3.74
2925 3564 2.703007 AGTGATCCACTGATCCCTAAGC 59.297 50.000 0.00 0.00 45.74 3.09
2936 3575 7.187824 ACTAATGTCAATACAGTGATCCACT 57.812 36.000 0.00 0.00 46.51 4.00
2937 3576 7.849804 AACTAATGTCAATACAGTGATCCAC 57.150 36.000 0.00 0.00 39.49 4.02
2938 3577 9.378551 GTAAACTAATGTCAATACAGTGATCCA 57.621 33.333 0.00 0.00 39.49 3.41
3042 3684 5.176592 AGAAATTTCGCTAACCCAGTAGTC 58.823 41.667 12.42 0.00 0.00 2.59
3342 3984 2.031683 GCCGGTACATGCAATTGTAGAC 59.968 50.000 7.40 2.72 32.92 2.59
3672 4315 5.376854 ACTCTTGCCATAACATTTGTGAC 57.623 39.130 0.00 0.00 0.00 3.67
3719 4362 3.525199 AGGAAATCTAACATCAGTGGGCT 59.475 43.478 0.00 0.00 0.00 5.19
3720 4363 3.879892 GAGGAAATCTAACATCAGTGGGC 59.120 47.826 0.00 0.00 0.00 5.36
3722 4365 5.102953 TGGAGGAAATCTAACATCAGTGG 57.897 43.478 0.00 0.00 0.00 4.00
3723 4366 4.574013 GCTGGAGGAAATCTAACATCAGTG 59.426 45.833 0.00 0.00 0.00 3.66
3724 4367 4.225942 TGCTGGAGGAAATCTAACATCAGT 59.774 41.667 0.00 0.00 0.00 3.41
3763 4406 4.036971 TCAAAATTCCAAACAGTGTACCCG 59.963 41.667 0.00 0.00 0.00 5.28
3810 4453 9.201989 ACTCATCAATAGGTCAAGAGTTATGTA 57.798 33.333 0.00 0.00 31.38 2.29
3853 4563 2.162208 TCCAGATCAATTTTGCGCAGTC 59.838 45.455 11.31 1.83 0.00 3.51
3859 4569 3.924686 CAGCAAGTCCAGATCAATTTTGC 59.075 43.478 11.57 11.57 39.61 3.68
3860 4570 4.921515 CACAGCAAGTCCAGATCAATTTTG 59.078 41.667 0.00 0.00 0.00 2.44
3864 4574 2.040813 ACCACAGCAAGTCCAGATCAAT 59.959 45.455 0.00 0.00 0.00 2.57
3882 4592 5.963865 TGCTATGATATATAGGGCTCAACCA 59.036 40.000 0.00 0.00 42.05 3.67
3899 4609 8.347771 GCAACTCAGAAATATCAAATGCTATGA 58.652 33.333 0.00 0.00 0.00 2.15
3900 4610 7.594015 GGCAACTCAGAAATATCAAATGCTATG 59.406 37.037 0.00 0.00 0.00 2.23
3901 4611 7.255730 GGGCAACTCAGAAATATCAAATGCTAT 60.256 37.037 0.00 0.00 0.00 2.97
3902 4612 6.039717 GGGCAACTCAGAAATATCAAATGCTA 59.960 38.462 0.00 0.00 0.00 3.49
3903 4613 5.163478 GGGCAACTCAGAAATATCAAATGCT 60.163 40.000 0.00 0.00 0.00 3.79
3904 4614 5.045872 GGGCAACTCAGAAATATCAAATGC 58.954 41.667 0.00 0.00 0.00 3.56
3905 4615 5.594926 GGGGCAACTCAGAAATATCAAATG 58.405 41.667 0.00 0.00 36.63 2.32
3906 4616 4.339247 CGGGGCAACTCAGAAATATCAAAT 59.661 41.667 0.00 0.00 36.02 2.32
3907 4617 3.694072 CGGGGCAACTCAGAAATATCAAA 59.306 43.478 0.00 0.00 36.02 2.69
3908 4618 3.278574 CGGGGCAACTCAGAAATATCAA 58.721 45.455 0.00 0.00 36.02 2.57
3909 4619 2.238646 ACGGGGCAACTCAGAAATATCA 59.761 45.455 0.00 0.00 36.02 2.15
3910 4620 2.919228 ACGGGGCAACTCAGAAATATC 58.081 47.619 0.00 0.00 36.02 1.63
3911 4621 4.497291 TTACGGGGCAACTCAGAAATAT 57.503 40.909 0.00 0.00 36.02 1.28
3912 4622 3.985019 TTACGGGGCAACTCAGAAATA 57.015 42.857 0.00 0.00 36.02 1.40
3913 4623 2.871096 TTACGGGGCAACTCAGAAAT 57.129 45.000 0.00 0.00 36.02 2.17
3914 4624 2.871096 ATTACGGGGCAACTCAGAAA 57.129 45.000 0.00 0.00 36.02 2.52
3915 4625 3.101437 TCTATTACGGGGCAACTCAGAA 58.899 45.455 0.00 0.00 36.02 3.02
3916 4626 2.742348 TCTATTACGGGGCAACTCAGA 58.258 47.619 0.00 0.00 36.02 3.27
3917 4627 3.536956 TTCTATTACGGGGCAACTCAG 57.463 47.619 0.00 0.00 36.02 3.35
3918 4628 4.497291 AATTCTATTACGGGGCAACTCA 57.503 40.909 0.00 0.00 36.02 3.41
3919 4629 7.609056 TCTATAATTCTATTACGGGGCAACTC 58.391 38.462 0.00 0.00 0.00 3.01
3920 4630 7.549147 TCTATAATTCTATTACGGGGCAACT 57.451 36.000 0.00 0.00 0.00 3.16
3921 4631 9.530633 CTATCTATAATTCTATTACGGGGCAAC 57.469 37.037 0.00 0.00 0.00 4.17
3922 4632 9.483489 TCTATCTATAATTCTATTACGGGGCAA 57.517 33.333 0.00 0.00 0.00 4.52
3923 4633 9.483489 TTCTATCTATAATTCTATTACGGGGCA 57.517 33.333 0.00 0.00 0.00 5.36
3936 4646 9.726438 CCTCGGTTGGAAATTCTATCTATAATT 57.274 33.333 0.00 0.00 0.00 1.40
3937 4647 9.101325 TCCTCGGTTGGAAATTCTATCTATAAT 57.899 33.333 0.00 0.00 32.39 1.28
3938 4648 8.486942 TCCTCGGTTGGAAATTCTATCTATAA 57.513 34.615 0.00 0.00 32.39 0.98
3939 4649 7.948447 TCTCCTCGGTTGGAAATTCTATCTATA 59.052 37.037 0.00 0.00 35.43 1.31
3940 4650 6.782988 TCTCCTCGGTTGGAAATTCTATCTAT 59.217 38.462 0.00 0.00 35.43 1.98
3941 4651 6.134055 TCTCCTCGGTTGGAAATTCTATCTA 58.866 40.000 0.00 0.00 35.43 1.98
3942 4652 4.962995 TCTCCTCGGTTGGAAATTCTATCT 59.037 41.667 0.00 0.00 35.43 1.98
3943 4653 5.163395 ACTCTCCTCGGTTGGAAATTCTATC 60.163 44.000 0.00 0.00 35.43 2.08
3944 4654 4.717280 ACTCTCCTCGGTTGGAAATTCTAT 59.283 41.667 0.00 0.00 35.43 1.98
3945 4655 4.081642 CACTCTCCTCGGTTGGAAATTCTA 60.082 45.833 0.00 0.00 35.43 2.10
3946 4656 2.907042 ACTCTCCTCGGTTGGAAATTCT 59.093 45.455 0.00 0.00 35.43 2.40
3947 4657 3.003480 CACTCTCCTCGGTTGGAAATTC 58.997 50.000 0.00 0.00 35.43 2.17
3948 4658 2.637872 TCACTCTCCTCGGTTGGAAATT 59.362 45.455 0.00 0.00 35.43 1.82
3949 4659 2.257207 TCACTCTCCTCGGTTGGAAAT 58.743 47.619 0.00 0.00 35.43 2.17
3950 4660 1.712056 TCACTCTCCTCGGTTGGAAA 58.288 50.000 0.00 0.00 35.43 3.13
3951 4661 1.618837 CTTCACTCTCCTCGGTTGGAA 59.381 52.381 0.00 0.00 35.43 3.53
3952 4662 1.257743 CTTCACTCTCCTCGGTTGGA 58.742 55.000 0.00 0.00 34.52 3.53
3953 4663 0.390472 GCTTCACTCTCCTCGGTTGG 60.390 60.000 0.00 0.00 0.00 3.77
3954 4664 0.390472 GGCTTCACTCTCCTCGGTTG 60.390 60.000 0.00 0.00 0.00 3.77
3955 4665 1.545706 GGGCTTCACTCTCCTCGGTT 61.546 60.000 0.00 0.00 0.00 4.44
3979 4689 2.802106 CTTCCCCGTCTCGAGCTC 59.198 66.667 7.81 2.73 0.00 4.09
3980 4690 3.453679 GCTTCCCCGTCTCGAGCT 61.454 66.667 7.81 0.00 0.00 4.09
3981 4691 4.516195 GGCTTCCCCGTCTCGAGC 62.516 72.222 7.81 1.89 0.00 5.03
3984 4694 2.202932 CATGGCTTCCCCGTCTCG 60.203 66.667 0.00 0.00 35.87 4.04
3999 4709 2.671070 CCTCGTGGGCAACTCCAT 59.329 61.111 0.00 0.00 39.26 3.41
4010 4720 1.374758 GTCTTGGCTCACCCTCGTG 60.375 63.158 0.00 0.00 41.72 4.35
4011 4721 2.584391 GGTCTTGGCTCACCCTCGT 61.584 63.158 0.00 0.00 33.59 4.18
4012 4722 1.831652 AAGGTCTTGGCTCACCCTCG 61.832 60.000 0.00 0.00 32.45 4.63
4013 4723 0.322008 CAAGGTCTTGGCTCACCCTC 60.322 60.000 2.94 0.00 36.95 4.30
4014 4724 1.062488 ACAAGGTCTTGGCTCACCCT 61.062 55.000 14.29 0.00 44.45 4.34
4015 4725 0.178990 AACAAGGTCTTGGCTCACCC 60.179 55.000 14.29 0.00 44.45 4.61
4016 4726 0.954452 CAACAAGGTCTTGGCTCACC 59.046 55.000 14.29 0.00 44.45 4.02
4017 4727 0.954452 CCAACAAGGTCTTGGCTCAC 59.046 55.000 14.29 0.00 44.45 3.51
4018 4728 0.843309 TCCAACAAGGTCTTGGCTCA 59.157 50.000 14.29 0.00 44.45 4.26
4019 4729 1.815003 CATCCAACAAGGTCTTGGCTC 59.185 52.381 14.29 0.00 44.45 4.70
4020 4730 1.915141 CATCCAACAAGGTCTTGGCT 58.085 50.000 14.29 0.00 44.45 4.75
4021 4731 0.244721 GCATCCAACAAGGTCTTGGC 59.755 55.000 14.29 4.17 44.45 4.52
4022 4732 1.542915 CAGCATCCAACAAGGTCTTGG 59.457 52.381 14.29 0.00 44.45 3.61
4023 4733 1.542915 CCAGCATCCAACAAGGTCTTG 59.457 52.381 8.97 8.97 45.58 3.02
4024 4734 1.548582 CCCAGCATCCAACAAGGTCTT 60.549 52.381 0.00 0.00 39.02 3.01
4025 4735 0.038744 CCCAGCATCCAACAAGGTCT 59.961 55.000 0.00 0.00 39.02 3.85
4026 4736 0.038166 TCCCAGCATCCAACAAGGTC 59.962 55.000 0.00 0.00 39.02 3.85
4027 4737 0.251341 GTCCCAGCATCCAACAAGGT 60.251 55.000 0.00 0.00 39.02 3.50
4028 4738 1.308069 CGTCCCAGCATCCAACAAGG 61.308 60.000 0.00 0.00 39.47 3.61
4029 4739 0.321564 TCGTCCCAGCATCCAACAAG 60.322 55.000 0.00 0.00 0.00 3.16
4030 4740 0.605319 GTCGTCCCAGCATCCAACAA 60.605 55.000 0.00 0.00 0.00 2.83
4031 4741 1.003839 GTCGTCCCAGCATCCAACA 60.004 57.895 0.00 0.00 0.00 3.33
4032 4742 1.003839 TGTCGTCCCAGCATCCAAC 60.004 57.895 0.00 0.00 0.00 3.77
4033 4743 1.003839 GTGTCGTCCCAGCATCCAA 60.004 57.895 0.00 0.00 0.00 3.53
4034 4744 2.662596 GTGTCGTCCCAGCATCCA 59.337 61.111 0.00 0.00 0.00 3.41
4035 4745 2.509336 CGTGTCGTCCCAGCATCC 60.509 66.667 0.00 0.00 0.00 3.51
4036 4746 2.261671 ACGTGTCGTCCCAGCATC 59.738 61.111 0.00 0.00 33.69 3.91
4045 4755 1.669049 TTGGTGGTGAGACGTGTCGT 61.669 55.000 8.31 0.00 45.10 4.34
4046 4756 0.939577 CTTGGTGGTGAGACGTGTCG 60.940 60.000 8.31 0.00 34.09 4.35
4047 4757 0.600255 CCTTGGTGGTGAGACGTGTC 60.600 60.000 5.61 5.61 0.00 3.67
4048 4758 1.445942 CCTTGGTGGTGAGACGTGT 59.554 57.895 0.00 0.00 0.00 4.49
4049 4759 1.301716 CCCTTGGTGGTGAGACGTG 60.302 63.158 0.00 0.00 0.00 4.49
4050 4760 2.516888 CCCCTTGGTGGTGAGACGT 61.517 63.158 0.00 0.00 0.00 4.34
4051 4761 2.172483 CTCCCCTTGGTGGTGAGACG 62.172 65.000 0.00 0.00 0.00 4.18
4052 4762 1.679898 CTCCCCTTGGTGGTGAGAC 59.320 63.158 0.00 0.00 0.00 3.36
4053 4763 1.538876 CCTCCCCTTGGTGGTGAGA 60.539 63.158 0.00 0.00 39.93 3.27
4054 4764 1.133809 TTCCTCCCCTTGGTGGTGAG 61.134 60.000 0.09 0.00 44.29 3.51
4055 4765 0.699577 TTTCCTCCCCTTGGTGGTGA 60.700 55.000 0.09 0.00 44.29 4.02
4056 4766 0.409484 ATTTCCTCCCCTTGGTGGTG 59.591 55.000 0.09 0.00 44.29 4.17
4057 4767 0.409484 CATTTCCTCCCCTTGGTGGT 59.591 55.000 0.09 0.00 44.29 4.16
4058 4768 0.324645 CCATTTCCTCCCCTTGGTGG 60.325 60.000 0.00 0.00 45.14 4.61
4059 4769 0.324645 CCCATTTCCTCCCCTTGGTG 60.325 60.000 0.00 0.00 0.00 4.17
4060 4770 1.518431 CCCCATTTCCTCCCCTTGGT 61.518 60.000 0.00 0.00 0.00 3.67
4061 4771 1.311059 CCCCATTTCCTCCCCTTGG 59.689 63.158 0.00 0.00 0.00 3.61
4062 4772 0.033109 GACCCCATTTCCTCCCCTTG 60.033 60.000 0.00 0.00 0.00 3.61
4063 4773 0.479589 TGACCCCATTTCCTCCCCTT 60.480 55.000 0.00 0.00 0.00 3.95
4064 4774 0.254299 ATGACCCCATTTCCTCCCCT 60.254 55.000 0.00 0.00 0.00 4.79
4065 4775 0.636647 AATGACCCCATTTCCTCCCC 59.363 55.000 0.00 0.00 39.86 4.81
4066 4776 1.689258 CCAATGACCCCATTTCCTCCC 60.689 57.143 0.00 0.00 40.81 4.30
4067 4777 1.007118 ACCAATGACCCCATTTCCTCC 59.993 52.381 0.00 0.00 40.81 4.30
4068 4778 2.532250 ACCAATGACCCCATTTCCTC 57.468 50.000 0.00 0.00 40.81 3.71
4069 4779 2.111613 TGAACCAATGACCCCATTTCCT 59.888 45.455 0.00 0.00 40.81 3.36
4070 4780 2.497273 CTGAACCAATGACCCCATTTCC 59.503 50.000 0.00 0.00 40.81 3.13
4071 4781 2.497273 CCTGAACCAATGACCCCATTTC 59.503 50.000 0.00 0.00 40.81 2.17
4072 4782 2.158173 ACCTGAACCAATGACCCCATTT 60.158 45.455 0.00 0.00 40.81 2.32
4073 4783 1.432807 ACCTGAACCAATGACCCCATT 59.567 47.619 0.00 0.00 43.37 3.16
4074 4784 1.084018 ACCTGAACCAATGACCCCAT 58.916 50.000 0.00 0.00 33.66 4.00
4075 4785 0.112218 CACCTGAACCAATGACCCCA 59.888 55.000 0.00 0.00 0.00 4.96
4076 4786 0.611896 CCACCTGAACCAATGACCCC 60.612 60.000 0.00 0.00 0.00 4.95
4077 4787 0.112412 ACCACCTGAACCAATGACCC 59.888 55.000 0.00 0.00 0.00 4.46
4078 4788 1.995376 AACCACCTGAACCAATGACC 58.005 50.000 0.00 0.00 0.00 4.02
4079 4789 4.400529 AAAAACCACCTGAACCAATGAC 57.599 40.909 0.00 0.00 0.00 3.06
4099 4809 9.770097 GAGTCTATCAAATATGAGTGGATGAAA 57.230 33.333 0.00 0.00 39.39 2.69
4100 4810 8.370940 GGAGTCTATCAAATATGAGTGGATGAA 58.629 37.037 0.00 0.00 39.39 2.57
4101 4811 7.309438 CGGAGTCTATCAAATATGAGTGGATGA 60.309 40.741 0.00 0.00 39.39 2.92
4102 4812 6.810676 CGGAGTCTATCAAATATGAGTGGATG 59.189 42.308 0.00 0.00 39.39 3.51
4103 4813 6.721668 TCGGAGTCTATCAAATATGAGTGGAT 59.278 38.462 0.00 0.00 39.39 3.41
4104 4814 6.068670 TCGGAGTCTATCAAATATGAGTGGA 58.931 40.000 0.00 0.00 39.39 4.02
4105 4815 6.332735 TCGGAGTCTATCAAATATGAGTGG 57.667 41.667 0.00 0.00 39.39 4.00
4106 4816 5.861251 GCTCGGAGTCTATCAAATATGAGTG 59.139 44.000 6.90 0.00 39.39 3.51
4107 4817 5.772672 AGCTCGGAGTCTATCAAATATGAGT 59.227 40.000 6.90 0.00 39.39 3.41
4108 4818 6.266168 AGCTCGGAGTCTATCAAATATGAG 57.734 41.667 6.90 0.00 39.39 2.90
4109 4819 6.265422 TCAAGCTCGGAGTCTATCAAATATGA 59.735 38.462 6.90 0.77 40.57 2.15
4110 4820 6.450545 TCAAGCTCGGAGTCTATCAAATATG 58.549 40.000 6.90 0.00 0.00 1.78
4111 4821 6.491745 TCTCAAGCTCGGAGTCTATCAAATAT 59.508 38.462 13.31 0.00 34.04 1.28
4112 4822 5.828328 TCTCAAGCTCGGAGTCTATCAAATA 59.172 40.000 13.31 0.00 34.04 1.40
4113 4823 4.646945 TCTCAAGCTCGGAGTCTATCAAAT 59.353 41.667 13.31 0.00 34.04 2.32
4114 4824 4.017126 TCTCAAGCTCGGAGTCTATCAAA 58.983 43.478 13.31 0.00 34.04 2.69
4115 4825 3.621558 TCTCAAGCTCGGAGTCTATCAA 58.378 45.455 13.31 0.00 34.04 2.57
4116 4826 3.283259 TCTCAAGCTCGGAGTCTATCA 57.717 47.619 13.31 0.00 34.04 2.15
4117 4827 4.394920 CCTATCTCAAGCTCGGAGTCTATC 59.605 50.000 13.31 0.00 34.04 2.08
4118 4828 4.331968 CCTATCTCAAGCTCGGAGTCTAT 58.668 47.826 13.31 4.86 34.04 1.98
4119 4829 3.497048 CCCTATCTCAAGCTCGGAGTCTA 60.497 52.174 13.31 7.38 34.04 2.59
4120 4830 2.582052 CCTATCTCAAGCTCGGAGTCT 58.418 52.381 13.31 1.63 34.04 3.24
4121 4831 1.611491 CCCTATCTCAAGCTCGGAGTC 59.389 57.143 13.31 0.00 34.04 3.36
4122 4832 1.215673 TCCCTATCTCAAGCTCGGAGT 59.784 52.381 13.31 5.79 34.04 3.85
4123 4833 1.988293 TCCCTATCTCAAGCTCGGAG 58.012 55.000 8.65 8.65 0.00 4.63
4124 4834 2.242926 CATCCCTATCTCAAGCTCGGA 58.757 52.381 0.00 0.00 0.00 4.55
4125 4835 1.967066 ACATCCCTATCTCAAGCTCGG 59.033 52.381 0.00 0.00 0.00 4.63
4126 4836 3.388308 CAACATCCCTATCTCAAGCTCG 58.612 50.000 0.00 0.00 0.00 5.03
4127 4837 3.137533 GCAACATCCCTATCTCAAGCTC 58.862 50.000 0.00 0.00 0.00 4.09
4128 4838 2.776536 AGCAACATCCCTATCTCAAGCT 59.223 45.455 0.00 0.00 0.00 3.74
4129 4839 2.877168 CAGCAACATCCCTATCTCAAGC 59.123 50.000 0.00 0.00 0.00 4.01
4130 4840 2.877168 GCAGCAACATCCCTATCTCAAG 59.123 50.000 0.00 0.00 0.00 3.02
4131 4841 2.507058 AGCAGCAACATCCCTATCTCAA 59.493 45.455 0.00 0.00 0.00 3.02
4132 4842 2.121948 AGCAGCAACATCCCTATCTCA 58.878 47.619 0.00 0.00 0.00 3.27
4133 4843 2.492012 CAGCAGCAACATCCCTATCTC 58.508 52.381 0.00 0.00 0.00 2.75
4134 4844 1.142465 CCAGCAGCAACATCCCTATCT 59.858 52.381 0.00 0.00 0.00 1.98
4135 4845 1.602311 CCAGCAGCAACATCCCTATC 58.398 55.000 0.00 0.00 0.00 2.08
4136 4846 0.466922 GCCAGCAGCAACATCCCTAT 60.467 55.000 0.00 0.00 42.97 2.57
4137 4847 1.077501 GCCAGCAGCAACATCCCTA 60.078 57.895 0.00 0.00 42.97 3.53
4138 4848 2.362120 GCCAGCAGCAACATCCCT 60.362 61.111 0.00 0.00 42.97 4.20
4139 4849 3.455469 GGCCAGCAGCAACATCCC 61.455 66.667 0.00 0.00 46.50 3.85
4140 4850 3.818787 CGGCCAGCAGCAACATCC 61.819 66.667 2.24 0.00 46.50 3.51
4141 4851 3.058160 ACGGCCAGCAGCAACATC 61.058 61.111 2.24 0.00 46.50 3.06
4142 4852 3.367743 CACGGCCAGCAGCAACAT 61.368 61.111 2.24 0.00 46.50 2.71
4148 4858 3.907260 ATGACACCACGGCCAGCAG 62.907 63.158 2.24 0.00 0.00 4.24
4149 4859 2.974692 AAATGACACCACGGCCAGCA 62.975 55.000 2.24 0.00 0.00 4.41
4150 4860 0.958382 TAAATGACACCACGGCCAGC 60.958 55.000 2.24 0.00 0.00 4.85
4151 4861 0.802494 GTAAATGACACCACGGCCAG 59.198 55.000 2.24 0.00 0.00 4.85
4152 4862 0.108774 TGTAAATGACACCACGGCCA 59.891 50.000 2.24 0.00 31.20 5.36
4153 4863 1.199097 CTTGTAAATGACACCACGGCC 59.801 52.381 0.00 0.00 37.96 6.13
4154 4864 1.199097 CCTTGTAAATGACACCACGGC 59.801 52.381 0.00 0.00 37.96 5.68
4155 4865 2.773487 TCCTTGTAAATGACACCACGG 58.227 47.619 0.00 0.00 37.96 4.94
4156 4866 4.000325 TCATCCTTGTAAATGACACCACG 59.000 43.478 0.00 0.00 37.96 4.94
4157 4867 4.142600 GCTCATCCTTGTAAATGACACCAC 60.143 45.833 0.00 0.00 37.96 4.16
4158 4868 4.009675 GCTCATCCTTGTAAATGACACCA 58.990 43.478 0.00 0.00 37.96 4.17
4159 4869 3.378427 GGCTCATCCTTGTAAATGACACC 59.622 47.826 0.00 0.00 37.96 4.16
4160 4870 4.009675 TGGCTCATCCTTGTAAATGACAC 58.990 43.478 0.00 0.00 37.96 3.67
4161 4871 4.299586 TGGCTCATCCTTGTAAATGACA 57.700 40.909 0.00 0.00 35.78 3.58
4162 4872 4.096984 CCTTGGCTCATCCTTGTAAATGAC 59.903 45.833 0.00 0.00 35.26 3.06
4163 4873 4.272489 CCTTGGCTCATCCTTGTAAATGA 58.728 43.478 0.00 0.00 35.26 2.57
4164 4874 3.382546 CCCTTGGCTCATCCTTGTAAATG 59.617 47.826 0.00 0.00 35.26 2.32
4165 4875 3.628257 CCCCTTGGCTCATCCTTGTAAAT 60.628 47.826 0.00 0.00 35.26 1.40
4166 4876 2.291540 CCCCTTGGCTCATCCTTGTAAA 60.292 50.000 0.00 0.00 35.26 2.01
4167 4877 1.284785 CCCCTTGGCTCATCCTTGTAA 59.715 52.381 0.00 0.00 35.26 2.41
4168 4878 0.918983 CCCCTTGGCTCATCCTTGTA 59.081 55.000 0.00 0.00 35.26 2.41
4169 4879 1.693640 CCCCTTGGCTCATCCTTGT 59.306 57.895 0.00 0.00 35.26 3.16
4170 4880 4.672251 CCCCTTGGCTCATCCTTG 57.328 61.111 0.00 0.00 35.26 3.61
4180 4890 2.216331 CCCCAAACAAGCCCCTTGG 61.216 63.158 9.50 0.00 44.81 3.61
4181 4891 2.882677 GCCCCAAACAAGCCCCTTG 61.883 63.158 3.57 3.57 45.85 3.61
4182 4892 2.526624 GCCCCAAACAAGCCCCTT 60.527 61.111 0.00 0.00 0.00 3.95
4183 4893 4.994756 CGCCCCAAACAAGCCCCT 62.995 66.667 0.00 0.00 0.00 4.79
4186 4896 4.986708 TCCCGCCCCAAACAAGCC 62.987 66.667 0.00 0.00 0.00 4.35
4187 4897 2.679996 ATCCCGCCCCAAACAAGC 60.680 61.111 0.00 0.00 0.00 4.01
4188 4898 1.304052 TCATCCCGCCCCAAACAAG 60.304 57.895 0.00 0.00 0.00 3.16
4189 4899 1.605165 GTCATCCCGCCCCAAACAA 60.605 57.895 0.00 0.00 0.00 2.83
4190 4900 2.034999 GTCATCCCGCCCCAAACA 59.965 61.111 0.00 0.00 0.00 2.83
4191 4901 3.131478 CGTCATCCCGCCCCAAAC 61.131 66.667 0.00 0.00 0.00 2.93
4192 4902 4.418328 CCGTCATCCCGCCCCAAA 62.418 66.667 0.00 0.00 0.00 3.28
4198 4908 4.593864 GAGAGCCCGTCATCCCGC 62.594 72.222 0.00 0.00 0.00 6.13
4199 4909 2.835431 AGAGAGCCCGTCATCCCG 60.835 66.667 0.00 0.00 0.00 5.14
4200 4910 0.755698 TACAGAGAGCCCGTCATCCC 60.756 60.000 0.00 0.00 0.00 3.85
4201 4911 0.671251 CTACAGAGAGCCCGTCATCC 59.329 60.000 0.00 0.00 0.00 3.51
4202 4912 0.671251 CCTACAGAGAGCCCGTCATC 59.329 60.000 0.00 0.00 0.00 2.92
4203 4913 0.757188 CCCTACAGAGAGCCCGTCAT 60.757 60.000 0.00 0.00 0.00 3.06
4204 4914 1.379977 CCCTACAGAGAGCCCGTCA 60.380 63.158 0.00 0.00 0.00 4.35
4205 4915 2.128507 CCCCTACAGAGAGCCCGTC 61.129 68.421 0.00 0.00 0.00 4.79
4206 4916 2.042843 CCCCTACAGAGAGCCCGT 60.043 66.667 0.00 0.00 0.00 5.28
4207 4917 2.840102 CCCCCTACAGAGAGCCCG 60.840 72.222 0.00 0.00 0.00 6.13
4208 4918 1.762858 GACCCCCTACAGAGAGCCC 60.763 68.421 0.00 0.00 0.00 5.19
4209 4919 1.762858 GGACCCCCTACAGAGAGCC 60.763 68.421 0.00 0.00 0.00 4.70
4210 4920 2.128507 CGGACCCCCTACAGAGAGC 61.129 68.421 0.00 0.00 0.00 4.09
4211 4921 2.128507 GCGGACCCCCTACAGAGAG 61.129 68.421 0.00 0.00 0.00 3.20
4212 4922 2.043248 GCGGACCCCCTACAGAGA 60.043 66.667 0.00 0.00 0.00 3.10
4213 4923 2.042843 AGCGGACCCCCTACAGAG 60.043 66.667 0.00 0.00 0.00 3.35
4214 4924 2.363795 CAGCGGACCCCCTACAGA 60.364 66.667 0.00 0.00 0.00 3.41
4215 4925 3.470888 CCAGCGGACCCCCTACAG 61.471 72.222 0.00 0.00 0.00 2.74
4216 4926 3.857521 AACCAGCGGACCCCCTACA 62.858 63.158 1.50 0.00 0.00 2.74
4217 4927 3.007323 AACCAGCGGACCCCCTAC 61.007 66.667 1.50 0.00 0.00 3.18
4218 4928 2.686106 GAACCAGCGGACCCCCTA 60.686 66.667 1.50 0.00 0.00 3.53
4219 4929 4.974438 TGAACCAGCGGACCCCCT 62.974 66.667 1.50 0.00 0.00 4.79
4220 4930 4.410400 CTGAACCAGCGGACCCCC 62.410 72.222 1.50 0.00 0.00 5.40
4221 4931 4.410400 CCTGAACCAGCGGACCCC 62.410 72.222 1.50 0.00 0.00 4.95
4222 4932 2.240162 CTACCTGAACCAGCGGACCC 62.240 65.000 1.50 0.00 0.00 4.46
4223 4933 1.218316 CTACCTGAACCAGCGGACC 59.782 63.158 1.50 0.00 0.00 4.46
4224 4934 1.218316 CCTACCTGAACCAGCGGAC 59.782 63.158 1.50 0.00 0.00 4.79
4225 4935 1.987855 CCCTACCTGAACCAGCGGA 60.988 63.158 1.50 0.00 0.00 5.54
4226 4936 2.584608 CCCTACCTGAACCAGCGG 59.415 66.667 0.00 0.00 0.00 5.52
4227 4937 2.240162 GACCCCTACCTGAACCAGCG 62.240 65.000 0.00 0.00 0.00 5.18
4239 4949 6.376018 CGGTATCAAAATGAAAAAGACCCCTA 59.624 38.462 0.00 0.00 0.00 3.53
4245 4955 8.625651 TCTCAAACGGTATCAAAATGAAAAAGA 58.374 29.630 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.