Multiple sequence alignment - TraesCS5D01G204100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G204100 chr5D 100.000 4480 0 0 1 4480 309352147 309356626 0.000000e+00 8274
1 TraesCS5D01G204100 chr5A 93.954 3341 125 26 644 3963 402539213 402542497 0.000000e+00 4979
2 TraesCS5D01G204100 chr5A 81.116 233 28 13 4017 4245 402542498 402542718 5.960000e-39 172
3 TraesCS5D01G204100 chr5B 95.611 1595 50 8 644 2236 354509547 354511123 0.000000e+00 2540
4 TraesCS5D01G204100 chr5B 93.066 1024 51 13 2959 3967 354512026 354513044 0.000000e+00 1480
5 TraesCS5D01G204100 chr5B 89.409 491 24 8 3986 4455 354513210 354513693 1.070000e-165 593
6 TraesCS5D01G204100 chr5B 95.174 373 15 2 2563 2933 354511658 354512029 1.800000e-163 586
7 TraesCS5D01G204100 chr5B 95.770 331 4 2 2236 2566 354511216 354511536 3.970000e-145 525
8 TraesCS5D01G204100 chr5B 90.164 183 10 4 424 606 354509296 354509470 9.690000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G204100 chr5D 309352147 309356626 4479 False 8274.0 8274 100.000 1 4480 1 chr5D.!!$F1 4479
1 TraesCS5D01G204100 chr5A 402539213 402542718 3505 False 2575.5 4979 87.535 644 4245 2 chr5A.!!$F1 3601
2 TraesCS5D01G204100 chr5B 354509296 354513693 4397 False 992.5 2540 93.199 424 4455 6 chr5B.!!$F1 4031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.035056 ATCAACGAAGCTTGGAGGGG 60.035 55.0 16.00 1.80 0.00 4.79 F
251 252 0.037790 GATCCTAGATCCGCCACTGC 60.038 60.0 0.00 0.00 0.00 4.40 F
399 400 0.107897 AATGTATTCGGCGCACTGGA 60.108 50.0 10.83 0.00 0.00 3.86 F
400 401 0.530650 ATGTATTCGGCGCACTGGAG 60.531 55.0 10.83 0.00 0.00 3.86 F
412 413 0.602638 CACTGGAGCTTACGGTTGCA 60.603 55.0 1.44 0.00 0.00 4.08 F
413 414 0.602905 ACTGGAGCTTACGGTTGCAC 60.603 55.0 8.17 2.66 0.00 4.57 F
512 513 0.603569 ATTAGTATCGGGCTGCCGAG 59.396 55.0 13.40 9.54 45.45 4.63 F
1528 1574 1.176619 CCAGGGAACACCGGTTTTCC 61.177 60.0 34.97 34.97 46.96 3.13 F
2495 2638 0.251165 GGGTTTGGTGGCTTGCTCTA 60.251 55.0 0.00 0.00 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1123 0.107214 CTCTCCAGGCTCTCGAGTCT 60.107 60.000 13.13 6.13 45.70 3.24 R
1234 1277 0.618458 AGGCGGTAAATCAGCAGGAA 59.382 50.000 0.00 0.00 38.93 3.36 R
1240 1283 1.949525 CCAATCCAGGCGGTAAATCAG 59.050 52.381 0.00 0.00 0.00 2.90 R
1344 1389 2.098117 CCACAGAAAATCCGCTCCAATC 59.902 50.000 0.00 0.00 0.00 2.67 R
2240 2383 4.986622 ACTTCACAAAGTGAACTTCTTGC 58.013 39.130 8.39 0.00 45.88 4.01 R
2243 2386 7.396540 AATTGACTTCACAAAGTGAACTTCT 57.603 32.000 8.39 0.00 45.88 2.85 R
2426 2569 4.608948 AGCATATGGCCAGTAGTAGTTC 57.391 45.455 13.05 0.00 46.50 3.01 R
2890 3161 0.033366 CCTTGTTTTTCTTGCGGGGG 59.967 55.000 0.00 0.00 0.00 5.40 R
4017 4448 0.176680 TGCAGAATCGCCTTCTCTCC 59.823 55.000 0.00 0.00 42.48 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.363627 ACCTACACTACTAGTTGGAGCC 58.636 50.000 0.00 0.00 35.78 4.70
23 24 2.358267 CCTACACTACTAGTTGGAGCCG 59.642 54.545 0.00 0.00 34.42 5.52
24 25 2.211250 ACACTACTAGTTGGAGCCGA 57.789 50.000 0.00 0.00 0.00 5.54
25 26 2.093106 ACACTACTAGTTGGAGCCGAG 58.907 52.381 0.00 0.00 0.00 4.63
26 27 1.405821 CACTACTAGTTGGAGCCGAGG 59.594 57.143 0.00 0.00 0.00 4.63
27 28 0.386113 CTACTAGTTGGAGCCGAGGC 59.614 60.000 5.89 5.89 42.33 4.70
28 29 0.323999 TACTAGTTGGAGCCGAGGCA 60.324 55.000 17.18 0.00 44.88 4.75
29 30 0.978146 ACTAGTTGGAGCCGAGGCAT 60.978 55.000 17.18 1.25 44.88 4.40
30 31 0.249657 CTAGTTGGAGCCGAGGCATC 60.250 60.000 17.18 10.39 44.88 3.91
31 32 0.687757 TAGTTGGAGCCGAGGCATCT 60.688 55.000 17.18 8.84 44.88 2.90
32 33 1.817099 GTTGGAGCCGAGGCATCTG 60.817 63.158 17.18 0.00 44.88 2.90
33 34 3.035173 TTGGAGCCGAGGCATCTGG 62.035 63.158 17.18 0.57 44.88 3.86
34 35 3.157252 GGAGCCGAGGCATCTGGA 61.157 66.667 17.18 0.00 44.88 3.86
35 36 2.515071 GGAGCCGAGGCATCTGGAT 61.515 63.158 17.18 6.58 44.88 3.41
36 37 1.005156 GAGCCGAGGCATCTGGATC 60.005 63.158 17.18 11.47 44.88 3.36
37 38 2.031768 GCCGAGGCATCTGGATCC 59.968 66.667 9.58 4.20 41.49 3.36
38 39 2.746359 CCGAGGCATCTGGATCCC 59.254 66.667 9.90 0.00 0.00 3.85
39 40 2.746359 CGAGGCATCTGGATCCCC 59.254 66.667 9.90 2.15 0.00 4.81
40 41 1.840650 CGAGGCATCTGGATCCCCT 60.841 63.158 9.90 7.84 0.00 4.79
41 42 1.414061 CGAGGCATCTGGATCCCCTT 61.414 60.000 9.90 0.00 0.00 3.95
42 43 0.399833 GAGGCATCTGGATCCCCTTC 59.600 60.000 9.90 0.00 0.00 3.46
43 44 1.064824 AGGCATCTGGATCCCCTTCC 61.065 60.000 9.90 4.21 36.24 3.46
44 45 1.072159 GCATCTGGATCCCCTTCCG 59.928 63.158 9.90 0.00 38.74 4.30
45 46 1.072159 CATCTGGATCCCCTTCCGC 59.928 63.158 9.90 0.00 38.74 5.54
46 47 2.150051 ATCTGGATCCCCTTCCGCC 61.150 63.158 9.90 0.00 38.74 6.13
47 48 2.914734 ATCTGGATCCCCTTCCGCCA 62.915 60.000 9.90 0.00 38.74 5.69
48 49 3.406595 CTGGATCCCCTTCCGCCAC 62.407 68.421 9.90 0.00 38.74 5.01
49 50 3.090532 GGATCCCCTTCCGCCACT 61.091 66.667 0.00 0.00 0.00 4.00
50 51 2.190578 GATCCCCTTCCGCCACTG 59.809 66.667 0.00 0.00 0.00 3.66
51 52 3.406595 GATCCCCTTCCGCCACTGG 62.407 68.421 0.00 0.00 0.00 4.00
61 62 3.745803 GCCACTGGCTGCTTGAGC 61.746 66.667 13.28 0.00 46.69 4.26
77 78 3.869272 GCGGCAGGCTCATCAACG 61.869 66.667 0.00 0.00 39.11 4.10
78 79 2.125552 CGGCAGGCTCATCAACGA 60.126 61.111 0.00 0.00 0.00 3.85
79 80 1.741401 CGGCAGGCTCATCAACGAA 60.741 57.895 0.00 0.00 0.00 3.85
80 81 1.699656 CGGCAGGCTCATCAACGAAG 61.700 60.000 0.00 0.00 0.00 3.79
81 82 1.427020 GCAGGCTCATCAACGAAGC 59.573 57.895 0.00 0.00 0.00 3.86
82 83 1.023513 GCAGGCTCATCAACGAAGCT 61.024 55.000 0.00 0.00 0.00 3.74
83 84 1.446907 CAGGCTCATCAACGAAGCTT 58.553 50.000 0.00 0.00 0.00 3.74
84 85 1.129998 CAGGCTCATCAACGAAGCTTG 59.870 52.381 2.10 0.00 0.00 4.01
85 86 0.449388 GGCTCATCAACGAAGCTTGG 59.551 55.000 2.10 4.94 0.00 3.61
86 87 1.442769 GCTCATCAACGAAGCTTGGA 58.557 50.000 16.00 2.42 0.00 3.53
87 88 1.396301 GCTCATCAACGAAGCTTGGAG 59.604 52.381 16.00 7.34 0.00 3.86
88 89 2.005451 CTCATCAACGAAGCTTGGAGG 58.995 52.381 16.00 6.63 0.00 4.30
89 90 1.089920 CATCAACGAAGCTTGGAGGG 58.910 55.000 16.00 4.19 0.00 4.30
90 91 0.035056 ATCAACGAAGCTTGGAGGGG 60.035 55.000 16.00 1.80 0.00 4.79
91 92 1.675641 CAACGAAGCTTGGAGGGGG 60.676 63.158 16.00 0.00 0.00 5.40
92 93 2.154074 AACGAAGCTTGGAGGGGGT 61.154 57.895 16.00 0.00 0.00 4.95
93 94 2.045926 CGAAGCTTGGAGGGGGTG 60.046 66.667 2.10 0.00 0.00 4.61
94 95 2.592993 CGAAGCTTGGAGGGGGTGA 61.593 63.158 2.10 0.00 0.00 4.02
95 96 1.915078 CGAAGCTTGGAGGGGGTGAT 61.915 60.000 2.10 0.00 0.00 3.06
96 97 0.106967 GAAGCTTGGAGGGGGTGATC 60.107 60.000 2.10 0.00 0.00 2.92
97 98 1.915078 AAGCTTGGAGGGGGTGATCG 61.915 60.000 0.00 0.00 0.00 3.69
98 99 2.190578 CTTGGAGGGGGTGATCGC 59.809 66.667 0.00 0.00 0.00 4.58
106 107 3.942439 GGGTGATCGCCCTAGCCC 61.942 72.222 33.23 9.05 45.22 5.19
107 108 3.161450 GGTGATCGCCCTAGCCCA 61.161 66.667 14.81 0.00 34.57 5.36
108 109 2.423446 GTGATCGCCCTAGCCCAG 59.577 66.667 0.00 0.00 34.57 4.45
109 110 2.844362 TGATCGCCCTAGCCCAGG 60.844 66.667 0.00 0.00 45.07 4.45
135 136 2.519013 AGCCAGAATTGGTTCAAGACC 58.481 47.619 0.00 0.00 46.80 3.85
143 144 2.035783 GTTCAAGACCAGGGCCCC 59.964 66.667 21.43 1.95 0.00 5.80
144 145 2.451493 TTCAAGACCAGGGCCCCA 60.451 61.111 21.43 0.00 0.00 4.96
145 146 1.856873 TTCAAGACCAGGGCCCCAT 60.857 57.895 21.43 3.23 0.00 4.00
146 147 2.043652 CAAGACCAGGGCCCCATG 60.044 66.667 21.43 11.77 0.00 3.66
147 148 4.066139 AAGACCAGGGCCCCATGC 62.066 66.667 21.43 6.13 40.16 4.06
149 150 4.828296 GACCAGGGCCCCATGCTG 62.828 72.222 21.43 9.99 40.92 4.41
152 153 3.812544 CAGGGCCCCATGCTGCTA 61.813 66.667 21.43 0.00 40.92 3.49
153 154 3.813724 AGGGCCCCATGCTGCTAC 61.814 66.667 21.43 0.00 40.92 3.58
154 155 4.127744 GGGCCCCATGCTGCTACA 62.128 66.667 12.23 0.00 40.92 2.74
155 156 2.517875 GGCCCCATGCTGCTACAG 60.518 66.667 0.00 0.00 40.92 2.74
156 157 2.273449 GCCCCATGCTGCTACAGT 59.727 61.111 0.00 0.00 36.87 3.55
157 158 2.117156 GCCCCATGCTGCTACAGTG 61.117 63.158 0.00 0.00 36.87 3.66
158 159 2.117156 CCCCATGCTGCTACAGTGC 61.117 63.158 0.00 0.00 33.43 4.40
159 160 2.466982 CCCATGCTGCTACAGTGCG 61.467 63.158 0.00 0.00 33.43 5.34
160 161 2.402388 CATGCTGCTACAGTGCGC 59.598 61.111 0.00 0.00 33.43 6.09
161 162 2.046988 ATGCTGCTACAGTGCGCA 60.047 55.556 5.66 5.66 42.65 6.09
162 163 2.393768 ATGCTGCTACAGTGCGCAC 61.394 57.895 32.79 32.79 41.87 5.34
163 164 2.740055 GCTGCTACAGTGCGCACT 60.740 61.111 36.44 36.44 43.61 4.40
164 165 1.446099 GCTGCTACAGTGCGCACTA 60.446 57.895 40.17 26.03 40.20 2.74
165 166 0.807667 GCTGCTACAGTGCGCACTAT 60.808 55.000 40.17 33.49 40.20 2.12
166 167 0.926155 CTGCTACAGTGCGCACTATG 59.074 55.000 40.17 31.22 40.20 2.23
167 168 1.083806 TGCTACAGTGCGCACTATGC 61.084 55.000 40.17 36.59 40.20 3.14
168 169 0.807667 GCTACAGTGCGCACTATGCT 60.808 55.000 40.17 24.43 42.25 3.79
169 170 0.926155 CTACAGTGCGCACTATGCTG 59.074 55.000 40.17 29.81 42.25 4.41
170 171 1.083806 TACAGTGCGCACTATGCTGC 61.084 55.000 40.17 12.74 42.25 5.25
171 172 2.046988 AGTGCGCACTATGCTGCA 60.047 55.556 40.15 4.13 45.23 4.41
172 173 2.104859 AGTGCGCACTATGCTGCAG 61.105 57.895 40.15 10.11 46.82 4.41
173 174 2.046988 TGCGCACTATGCTGCAGT 60.047 55.556 16.64 0.00 43.66 4.40
174 175 1.672030 TGCGCACTATGCTGCAGTT 60.672 52.632 16.64 6.05 43.66 3.16
175 176 0.390998 TGCGCACTATGCTGCAGTTA 60.391 50.000 16.64 5.36 43.66 2.24
176 177 0.726827 GCGCACTATGCTGCAGTTAA 59.273 50.000 16.64 1.65 42.25 2.01
177 178 1.529826 GCGCACTATGCTGCAGTTAAC 60.530 52.381 16.64 0.00 42.25 2.01
178 179 1.731709 CGCACTATGCTGCAGTTAACA 59.268 47.619 16.64 4.76 42.25 2.41
179 180 2.159430 CGCACTATGCTGCAGTTAACAA 59.841 45.455 16.64 0.00 42.25 2.83
180 181 3.364864 CGCACTATGCTGCAGTTAACAAA 60.365 43.478 16.64 0.00 42.25 2.83
181 182 3.914364 GCACTATGCTGCAGTTAACAAAC 59.086 43.478 16.64 0.00 40.96 2.93
182 183 4.556501 GCACTATGCTGCAGTTAACAAACA 60.557 41.667 16.64 1.93 40.96 2.83
183 184 5.518812 CACTATGCTGCAGTTAACAAACAA 58.481 37.500 16.64 0.00 0.00 2.83
184 185 6.151691 CACTATGCTGCAGTTAACAAACAAT 58.848 36.000 16.64 0.00 0.00 2.71
185 186 6.088483 CACTATGCTGCAGTTAACAAACAATG 59.912 38.462 16.64 0.00 0.00 2.82
186 187 3.122297 TGCTGCAGTTAACAAACAATGC 58.878 40.909 16.64 8.25 0.00 3.56
187 188 3.181477 TGCTGCAGTTAACAAACAATGCT 60.181 39.130 16.64 0.00 34.80 3.79
188 189 3.803778 GCTGCAGTTAACAAACAATGCTT 59.196 39.130 16.64 0.00 34.80 3.91
189 190 4.084900 GCTGCAGTTAACAAACAATGCTTC 60.085 41.667 16.64 0.98 34.80 3.86
190 191 5.261209 TGCAGTTAACAAACAATGCTTCT 57.739 34.783 8.61 0.00 34.80 2.85
191 192 5.659463 TGCAGTTAACAAACAATGCTTCTT 58.341 33.333 8.61 0.00 34.80 2.52
192 193 5.748152 TGCAGTTAACAAACAATGCTTCTTC 59.252 36.000 8.61 0.00 34.80 2.87
193 194 5.748152 GCAGTTAACAAACAATGCTTCTTCA 59.252 36.000 8.61 0.00 0.00 3.02
194 195 6.291796 GCAGTTAACAAACAATGCTTCTTCAC 60.292 38.462 8.61 0.00 0.00 3.18
195 196 5.971202 AGTTAACAAACAATGCTTCTTCACG 59.029 36.000 8.61 0.00 0.00 4.35
196 197 2.731217 ACAAACAATGCTTCTTCACGC 58.269 42.857 0.00 0.00 0.00 5.34
197 198 2.053627 CAAACAATGCTTCTTCACGCC 58.946 47.619 0.00 0.00 0.00 5.68
198 199 0.598065 AACAATGCTTCTTCACGCCC 59.402 50.000 0.00 0.00 0.00 6.13
199 200 0.250901 ACAATGCTTCTTCACGCCCT 60.251 50.000 0.00 0.00 0.00 5.19
200 201 1.003118 ACAATGCTTCTTCACGCCCTA 59.997 47.619 0.00 0.00 0.00 3.53
201 202 1.667724 CAATGCTTCTTCACGCCCTAG 59.332 52.381 0.00 0.00 0.00 3.02
202 203 0.905357 ATGCTTCTTCACGCCCTAGT 59.095 50.000 0.00 0.00 0.00 2.57
203 204 0.246635 TGCTTCTTCACGCCCTAGTC 59.753 55.000 0.00 0.00 0.00 2.59
204 205 0.460459 GCTTCTTCACGCCCTAGTCC 60.460 60.000 0.00 0.00 0.00 3.85
205 206 0.175989 CTTCTTCACGCCCTAGTCCC 59.824 60.000 0.00 0.00 0.00 4.46
206 207 0.543410 TTCTTCACGCCCTAGTCCCA 60.543 55.000 0.00 0.00 0.00 4.37
207 208 0.970937 TCTTCACGCCCTAGTCCCAG 60.971 60.000 0.00 0.00 0.00 4.45
208 209 2.579684 CTTCACGCCCTAGTCCCAGC 62.580 65.000 0.00 0.00 0.00 4.85
209 210 4.162690 CACGCCCTAGTCCCAGCC 62.163 72.222 0.00 0.00 0.00 4.85
240 241 2.201490 CCGGCCTGGGATCCTAGA 59.799 66.667 25.81 2.66 0.00 2.43
241 242 1.229336 CCGGCCTGGGATCCTAGAT 60.229 63.158 25.81 0.00 0.00 1.98
242 243 1.261238 CCGGCCTGGGATCCTAGATC 61.261 65.000 25.81 15.98 0.00 2.75
243 244 1.261238 CGGCCTGGGATCCTAGATCC 61.261 65.000 25.81 22.15 37.47 3.36
244 245 1.261238 GGCCTGGGATCCTAGATCCG 61.261 65.000 25.81 10.41 39.07 4.18
245 246 1.893919 GCCTGGGATCCTAGATCCGC 61.894 65.000 25.81 16.27 39.07 5.54
246 247 1.261238 CCTGGGATCCTAGATCCGCC 61.261 65.000 25.81 0.00 39.07 6.13
247 248 0.542938 CTGGGATCCTAGATCCGCCA 60.543 60.000 20.10 9.22 39.07 5.69
248 249 0.832135 TGGGATCCTAGATCCGCCAC 60.832 60.000 12.58 4.56 39.07 5.01
249 250 0.543174 GGGATCCTAGATCCGCCACT 60.543 60.000 12.58 0.00 39.07 4.00
250 251 0.605589 GGATCCTAGATCCGCCACTG 59.394 60.000 3.84 0.00 0.00 3.66
251 252 0.037790 GATCCTAGATCCGCCACTGC 60.038 60.000 0.00 0.00 0.00 4.40
252 253 0.470833 ATCCTAGATCCGCCACTGCT 60.471 55.000 0.00 0.00 34.43 4.24
253 254 1.109920 TCCTAGATCCGCCACTGCTC 61.110 60.000 0.00 0.00 34.43 4.26
254 255 1.112315 CCTAGATCCGCCACTGCTCT 61.112 60.000 0.00 0.00 34.43 4.09
255 256 1.610363 CTAGATCCGCCACTGCTCTA 58.390 55.000 0.00 0.00 34.43 2.43
256 257 1.539388 CTAGATCCGCCACTGCTCTAG 59.461 57.143 0.00 0.00 35.11 2.43
257 258 1.300542 GATCCGCCACTGCTCTAGC 60.301 63.158 0.00 0.00 42.50 3.42
258 259 2.707529 GATCCGCCACTGCTCTAGCC 62.708 65.000 0.00 0.00 41.18 3.93
259 260 4.880537 CCGCCACTGCTCTAGCCG 62.881 72.222 0.00 0.00 41.18 5.52
260 261 4.135153 CGCCACTGCTCTAGCCGT 62.135 66.667 0.00 0.00 41.18 5.68
265 266 1.914634 CACTGCTCTAGCCGTGTAAG 58.085 55.000 15.80 1.60 46.54 2.34
266 267 0.173708 ACTGCTCTAGCCGTGTAAGC 59.826 55.000 0.00 0.00 37.12 3.09
267 268 0.173481 CTGCTCTAGCCGTGTAAGCA 59.827 55.000 0.00 0.73 40.45 3.91
268 269 0.108804 TGCTCTAGCCGTGTAAGCAC 60.109 55.000 0.00 0.00 38.01 4.40
276 277 4.861883 GTGTAAGCACGCGAGAGA 57.138 55.556 15.93 0.00 35.75 3.10
277 278 3.102515 GTGTAAGCACGCGAGAGAA 57.897 52.632 15.93 0.00 35.75 2.87
278 279 1.415374 GTGTAAGCACGCGAGAGAAA 58.585 50.000 15.93 0.00 35.75 2.52
279 280 1.124477 GTGTAAGCACGCGAGAGAAAC 59.876 52.381 15.93 4.12 35.75 2.78
280 281 0.714439 GTAAGCACGCGAGAGAAACC 59.286 55.000 15.93 0.00 0.00 3.27
281 282 0.731514 TAAGCACGCGAGAGAAACCG 60.732 55.000 15.93 0.00 0.00 4.44
282 283 2.694829 AAGCACGCGAGAGAAACCGT 62.695 55.000 15.93 0.00 0.00 4.83
283 284 1.443194 GCACGCGAGAGAAACCGTA 60.443 57.895 15.93 0.00 32.05 4.02
284 285 1.005294 GCACGCGAGAGAAACCGTAA 61.005 55.000 15.93 0.00 32.05 3.18
285 286 0.706729 CACGCGAGAGAAACCGTAAC 59.293 55.000 15.93 0.00 32.05 2.50
286 287 0.595095 ACGCGAGAGAAACCGTAACT 59.405 50.000 15.93 0.00 31.43 2.24
287 288 1.000938 ACGCGAGAGAAACCGTAACTT 60.001 47.619 15.93 0.00 31.43 2.66
288 289 1.385743 CGCGAGAGAAACCGTAACTTG 59.614 52.381 0.00 0.00 0.00 3.16
289 290 1.725164 GCGAGAGAAACCGTAACTTGG 59.275 52.381 0.00 0.00 0.00 3.61
290 291 2.608752 GCGAGAGAAACCGTAACTTGGA 60.609 50.000 0.00 0.00 0.00 3.53
291 292 3.243336 CGAGAGAAACCGTAACTTGGAG 58.757 50.000 0.00 0.00 0.00 3.86
292 293 3.586892 GAGAGAAACCGTAACTTGGAGG 58.413 50.000 0.00 0.00 0.00 4.30
293 294 2.302157 AGAGAAACCGTAACTTGGAGGG 59.698 50.000 0.00 0.00 0.00 4.30
294 295 1.350019 AGAAACCGTAACTTGGAGGGG 59.650 52.381 0.00 0.00 0.00 4.79
295 296 1.348696 GAAACCGTAACTTGGAGGGGA 59.651 52.381 0.00 0.00 0.00 4.81
296 297 0.981943 AACCGTAACTTGGAGGGGAG 59.018 55.000 0.00 0.00 0.00 4.30
297 298 0.115745 ACCGTAACTTGGAGGGGAGA 59.884 55.000 0.00 0.00 0.00 3.71
298 299 1.273666 ACCGTAACTTGGAGGGGAGAT 60.274 52.381 0.00 0.00 0.00 2.75
299 300 1.413077 CCGTAACTTGGAGGGGAGATC 59.587 57.143 0.00 0.00 0.00 2.75
300 301 2.108168 CGTAACTTGGAGGGGAGATCA 58.892 52.381 0.00 0.00 0.00 2.92
301 302 2.500098 CGTAACTTGGAGGGGAGATCAA 59.500 50.000 0.00 0.00 0.00 2.57
302 303 3.679083 CGTAACTTGGAGGGGAGATCAAC 60.679 52.174 0.00 0.00 0.00 3.18
303 304 2.044793 ACTTGGAGGGGAGATCAACA 57.955 50.000 0.00 0.00 0.00 3.33
304 305 2.348472 ACTTGGAGGGGAGATCAACAA 58.652 47.619 0.00 0.00 0.00 2.83
305 306 2.307098 ACTTGGAGGGGAGATCAACAAG 59.693 50.000 0.00 0.00 39.60 3.16
306 307 2.342406 TGGAGGGGAGATCAACAAGA 57.658 50.000 0.00 0.00 0.00 3.02
307 308 1.909302 TGGAGGGGAGATCAACAAGAC 59.091 52.381 0.00 0.00 0.00 3.01
308 309 1.134670 GGAGGGGAGATCAACAAGACG 60.135 57.143 0.00 0.00 0.00 4.18
309 310 0.250513 AGGGGAGATCAACAAGACGC 59.749 55.000 0.00 0.00 0.00 5.19
310 311 0.250513 GGGGAGATCAACAAGACGCT 59.749 55.000 0.00 0.00 0.00 5.07
311 312 1.480954 GGGGAGATCAACAAGACGCTA 59.519 52.381 0.00 0.00 0.00 4.26
312 313 2.541556 GGGAGATCAACAAGACGCTAC 58.458 52.381 0.00 0.00 0.00 3.58
313 314 2.541556 GGAGATCAACAAGACGCTACC 58.458 52.381 0.00 0.00 0.00 3.18
314 315 2.094182 GGAGATCAACAAGACGCTACCA 60.094 50.000 0.00 0.00 0.00 3.25
315 316 2.924290 GAGATCAACAAGACGCTACCAC 59.076 50.000 0.00 0.00 0.00 4.16
316 317 2.299013 AGATCAACAAGACGCTACCACA 59.701 45.455 0.00 0.00 0.00 4.17
317 318 2.148916 TCAACAAGACGCTACCACAG 57.851 50.000 0.00 0.00 0.00 3.66
318 319 1.411246 TCAACAAGACGCTACCACAGT 59.589 47.619 0.00 0.00 0.00 3.55
319 320 2.159014 TCAACAAGACGCTACCACAGTT 60.159 45.455 0.00 0.00 0.00 3.16
320 321 3.068448 TCAACAAGACGCTACCACAGTTA 59.932 43.478 0.00 0.00 0.00 2.24
321 322 3.955650 ACAAGACGCTACCACAGTTAT 57.044 42.857 0.00 0.00 0.00 1.89
322 323 4.267349 ACAAGACGCTACCACAGTTATT 57.733 40.909 0.00 0.00 0.00 1.40
323 324 4.638304 ACAAGACGCTACCACAGTTATTT 58.362 39.130 0.00 0.00 0.00 1.40
324 325 4.451096 ACAAGACGCTACCACAGTTATTTG 59.549 41.667 0.00 0.00 0.00 2.32
325 326 4.530710 AGACGCTACCACAGTTATTTGA 57.469 40.909 0.00 0.00 0.00 2.69
326 327 5.086104 AGACGCTACCACAGTTATTTGAT 57.914 39.130 0.00 0.00 0.00 2.57
327 328 5.488341 AGACGCTACCACAGTTATTTGATT 58.512 37.500 0.00 0.00 0.00 2.57
328 329 5.351465 AGACGCTACCACAGTTATTTGATTG 59.649 40.000 0.00 0.00 0.00 2.67
329 330 4.142687 ACGCTACCACAGTTATTTGATTGC 60.143 41.667 0.00 0.00 0.00 3.56
330 331 4.142708 CGCTACCACAGTTATTTGATTGCA 60.143 41.667 0.00 0.00 0.00 4.08
331 332 5.449041 CGCTACCACAGTTATTTGATTGCAT 60.449 40.000 0.00 0.00 0.00 3.96
332 333 5.973565 GCTACCACAGTTATTTGATTGCATC 59.026 40.000 0.00 0.00 0.00 3.91
333 334 4.985413 ACCACAGTTATTTGATTGCATCG 58.015 39.130 0.00 0.00 0.00 3.84
334 335 4.458989 ACCACAGTTATTTGATTGCATCGT 59.541 37.500 0.00 0.00 0.00 3.73
335 336 5.048083 ACCACAGTTATTTGATTGCATCGTT 60.048 36.000 0.00 0.00 0.00 3.85
336 337 5.512788 CCACAGTTATTTGATTGCATCGTTC 59.487 40.000 0.00 0.00 0.00 3.95
337 338 6.085573 CACAGTTATTTGATTGCATCGTTCA 58.914 36.000 0.00 0.00 0.00 3.18
338 339 6.249893 CACAGTTATTTGATTGCATCGTTCAG 59.750 38.462 0.00 0.00 0.00 3.02
339 340 6.149308 ACAGTTATTTGATTGCATCGTTCAGA 59.851 34.615 0.00 0.00 0.00 3.27
340 341 6.685828 CAGTTATTTGATTGCATCGTTCAGAG 59.314 38.462 0.00 0.00 0.00 3.35
341 342 6.595326 AGTTATTTGATTGCATCGTTCAGAGA 59.405 34.615 0.00 0.00 0.00 3.10
342 343 5.885230 ATTTGATTGCATCGTTCAGAGAA 57.115 34.783 0.00 0.00 0.00 2.87
343 344 4.668576 TTGATTGCATCGTTCAGAGAAC 57.331 40.909 0.00 0.00 0.00 3.01
344 345 3.663025 TGATTGCATCGTTCAGAGAACA 58.337 40.909 10.15 0.00 0.00 3.18
345 346 4.256110 TGATTGCATCGTTCAGAGAACAT 58.744 39.130 10.15 1.19 0.00 2.71
346 347 4.330894 TGATTGCATCGTTCAGAGAACATC 59.669 41.667 10.15 5.14 0.00 3.06
347 348 2.262211 TGCATCGTTCAGAGAACATCG 58.738 47.619 10.15 0.00 0.00 3.84
348 349 2.263077 GCATCGTTCAGAGAACATCGT 58.737 47.619 10.15 0.00 0.00 3.73
349 350 2.668457 GCATCGTTCAGAGAACATCGTT 59.332 45.455 10.15 0.00 0.00 3.85
350 351 3.482598 GCATCGTTCAGAGAACATCGTTG 60.483 47.826 10.15 0.00 0.00 4.10
351 352 3.364889 TCGTTCAGAGAACATCGTTGT 57.635 42.857 10.15 0.00 37.82 3.32
353 354 4.116961 TCGTTCAGAGAACATCGTTGTTT 58.883 39.130 12.84 4.03 46.01 2.83
354 355 4.569162 TCGTTCAGAGAACATCGTTGTTTT 59.431 37.500 12.84 7.64 46.01 2.43
355 356 5.749588 TCGTTCAGAGAACATCGTTGTTTTA 59.250 36.000 12.84 0.00 46.01 1.52
356 357 6.422701 TCGTTCAGAGAACATCGTTGTTTTAT 59.577 34.615 12.84 2.52 46.01 1.40
357 358 7.595875 TCGTTCAGAGAACATCGTTGTTTTATA 59.404 33.333 12.84 0.00 46.01 0.98
358 359 8.218441 CGTTCAGAGAACATCGTTGTTTTATAA 58.782 33.333 12.84 3.11 46.01 0.98
359 360 9.872757 GTTCAGAGAACATCGTTGTTTTATAAA 57.127 29.630 12.84 0.00 46.01 1.40
360 361 9.872757 TTCAGAGAACATCGTTGTTTTATAAAC 57.127 29.630 12.84 0.00 46.01 2.01
361 362 9.047371 TCAGAGAACATCGTTGTTTTATAAACA 57.953 29.630 12.84 1.10 46.01 2.83
362 363 9.103048 CAGAGAACATCGTTGTTTTATAAACAC 57.897 33.333 12.84 1.18 46.01 3.32
363 364 8.007716 AGAGAACATCGTTGTTTTATAAACACG 58.992 33.333 12.84 13.78 46.01 4.49
364 365 6.575942 AGAACATCGTTGTTTTATAAACACGC 59.424 34.615 12.84 8.22 46.01 5.34
365 366 5.992729 ACATCGTTGTTTTATAAACACGCT 58.007 33.333 14.63 6.60 29.55 5.07
366 367 6.075280 ACATCGTTGTTTTATAAACACGCTC 58.925 36.000 14.63 5.11 29.55 5.03
367 368 5.910637 TCGTTGTTTTATAAACACGCTCT 57.089 34.783 14.63 0.00 0.00 4.09
368 369 7.116662 ACATCGTTGTTTTATAAACACGCTCTA 59.883 33.333 14.63 3.60 29.55 2.43
369 370 6.810286 TCGTTGTTTTATAAACACGCTCTAC 58.190 36.000 14.63 3.30 0.00 2.59
370 371 6.011277 CGTTGTTTTATAAACACGCTCTACC 58.989 40.000 4.59 0.00 0.00 3.18
371 372 6.309436 GTTGTTTTATAAACACGCTCTACCC 58.691 40.000 4.59 0.00 0.00 3.69
372 373 4.937015 TGTTTTATAAACACGCTCTACCCC 59.063 41.667 0.00 0.00 0.00 4.95
373 374 5.181009 GTTTTATAAACACGCTCTACCCCT 58.819 41.667 0.00 0.00 0.00 4.79
374 375 4.660789 TTATAAACACGCTCTACCCCTC 57.339 45.455 0.00 0.00 0.00 4.30
375 376 1.927487 TAAACACGCTCTACCCCTCA 58.073 50.000 0.00 0.00 0.00 3.86
376 377 1.053424 AAACACGCTCTACCCCTCAA 58.947 50.000 0.00 0.00 0.00 3.02
377 378 1.053424 AACACGCTCTACCCCTCAAA 58.947 50.000 0.00 0.00 0.00 2.69
378 379 0.608640 ACACGCTCTACCCCTCAAAG 59.391 55.000 0.00 0.00 0.00 2.77
379 380 0.895530 CACGCTCTACCCCTCAAAGA 59.104 55.000 0.00 0.00 0.00 2.52
380 381 1.275291 CACGCTCTACCCCTCAAAGAA 59.725 52.381 0.00 0.00 0.00 2.52
381 382 1.975680 ACGCTCTACCCCTCAAAGAAA 59.024 47.619 0.00 0.00 0.00 2.52
382 383 2.572104 ACGCTCTACCCCTCAAAGAAAT 59.428 45.455 0.00 0.00 0.00 2.17
383 384 2.939103 CGCTCTACCCCTCAAAGAAATG 59.061 50.000 0.00 0.00 0.00 2.32
384 385 3.619979 CGCTCTACCCCTCAAAGAAATGT 60.620 47.826 0.00 0.00 0.00 2.71
385 386 4.382685 CGCTCTACCCCTCAAAGAAATGTA 60.383 45.833 0.00 0.00 0.00 2.29
386 387 5.685075 CGCTCTACCCCTCAAAGAAATGTAT 60.685 44.000 0.00 0.00 0.00 2.29
387 388 6.122964 GCTCTACCCCTCAAAGAAATGTATT 58.877 40.000 0.00 0.00 0.00 1.89
388 389 6.261158 GCTCTACCCCTCAAAGAAATGTATTC 59.739 42.308 0.00 0.00 0.00 1.75
389 390 6.346096 TCTACCCCTCAAAGAAATGTATTCG 58.654 40.000 0.00 0.00 0.00 3.34
390 391 4.270008 ACCCCTCAAAGAAATGTATTCGG 58.730 43.478 0.00 0.00 0.00 4.30
391 392 3.066760 CCCCTCAAAGAAATGTATTCGGC 59.933 47.826 0.00 0.00 0.00 5.54
392 393 3.242739 CCCTCAAAGAAATGTATTCGGCG 60.243 47.826 0.00 0.00 0.00 6.46
393 394 3.354397 CTCAAAGAAATGTATTCGGCGC 58.646 45.455 0.00 0.00 0.00 6.53
394 395 2.744741 TCAAAGAAATGTATTCGGCGCA 59.255 40.909 10.83 0.00 0.00 6.09
395 396 2.825086 AAGAAATGTATTCGGCGCAC 57.175 45.000 10.83 0.00 0.00 5.34
396 397 2.024176 AGAAATGTATTCGGCGCACT 57.976 45.000 10.83 0.00 0.00 4.40
397 398 1.665679 AGAAATGTATTCGGCGCACTG 59.334 47.619 10.83 0.00 0.00 3.66
398 399 0.732571 AAATGTATTCGGCGCACTGG 59.267 50.000 10.83 0.00 0.00 4.00
399 400 0.107897 AATGTATTCGGCGCACTGGA 60.108 50.000 10.83 0.00 0.00 3.86
400 401 0.530650 ATGTATTCGGCGCACTGGAG 60.531 55.000 10.83 0.00 0.00 3.86
401 402 2.202878 TATTCGGCGCACTGGAGC 60.203 61.111 10.83 0.00 39.33 4.70
402 403 2.721167 TATTCGGCGCACTGGAGCT 61.721 57.895 10.83 0.00 40.01 4.09
403 404 2.238847 TATTCGGCGCACTGGAGCTT 62.239 55.000 10.83 0.00 40.01 3.74
404 405 2.238847 ATTCGGCGCACTGGAGCTTA 62.239 55.000 10.83 0.00 40.01 3.09
405 406 3.188786 CGGCGCACTGGAGCTTAC 61.189 66.667 10.83 0.00 40.01 2.34
406 407 3.188786 GGCGCACTGGAGCTTACG 61.189 66.667 10.83 0.00 40.01 3.18
407 408 3.188786 GCGCACTGGAGCTTACGG 61.189 66.667 0.30 0.00 36.83 4.02
408 409 2.261671 CGCACTGGAGCTTACGGT 59.738 61.111 0.00 0.00 0.00 4.83
409 410 1.374252 CGCACTGGAGCTTACGGTT 60.374 57.895 1.44 0.00 0.00 4.44
410 411 1.626654 CGCACTGGAGCTTACGGTTG 61.627 60.000 1.44 0.58 0.00 3.77
411 412 1.912371 GCACTGGAGCTTACGGTTGC 61.912 60.000 1.44 5.82 0.00 4.17
412 413 0.602638 CACTGGAGCTTACGGTTGCA 60.603 55.000 1.44 0.00 0.00 4.08
413 414 0.602905 ACTGGAGCTTACGGTTGCAC 60.603 55.000 8.17 2.66 0.00 4.57
414 415 1.626654 CTGGAGCTTACGGTTGCACG 61.627 60.000 8.17 0.00 40.31 5.34
415 416 2.474712 GAGCTTACGGTTGCACGC 59.525 61.111 8.17 0.00 37.37 5.34
416 417 2.280524 AGCTTACGGTTGCACGCA 60.281 55.556 8.17 0.00 37.37 5.24
417 418 1.635663 GAGCTTACGGTTGCACGCAT 61.636 55.000 8.17 0.00 37.37 4.73
418 419 1.511887 GCTTACGGTTGCACGCATG 60.512 57.895 0.00 0.00 37.37 4.06
419 420 1.134487 CTTACGGTTGCACGCATGG 59.866 57.895 0.00 0.00 37.37 3.66
420 421 1.573829 CTTACGGTTGCACGCATGGT 61.574 55.000 0.00 0.00 37.37 3.55
421 422 1.167155 TTACGGTTGCACGCATGGTT 61.167 50.000 0.00 0.00 37.37 3.67
422 423 1.570347 TACGGTTGCACGCATGGTTC 61.570 55.000 0.00 0.00 37.37 3.62
460 461 1.003580 GACCATGCTCTCCAAGGACAA 59.996 52.381 0.00 0.00 35.85 3.18
495 496 4.104738 ACCATCAACCCTCAATCGGATATT 59.895 41.667 0.00 0.00 0.00 1.28
497 498 5.877012 CCATCAACCCTCAATCGGATATTAG 59.123 44.000 0.00 0.00 0.00 1.73
498 499 6.467677 CATCAACCCTCAATCGGATATTAGT 58.532 40.000 0.00 0.00 0.00 2.24
499 500 7.310423 CCATCAACCCTCAATCGGATATTAGTA 60.310 40.741 0.00 0.00 0.00 1.82
500 501 7.792364 TCAACCCTCAATCGGATATTAGTAT 57.208 36.000 0.00 0.00 0.00 2.12
501 502 7.837863 TCAACCCTCAATCGGATATTAGTATC 58.162 38.462 0.00 0.00 36.73 2.24
502 503 6.452494 ACCCTCAATCGGATATTAGTATCG 57.548 41.667 0.00 0.00 38.06 2.92
504 505 5.221263 CCCTCAATCGGATATTAGTATCGGG 60.221 48.000 11.32 5.68 38.06 5.14
505 506 5.258456 TCAATCGGATATTAGTATCGGGC 57.742 43.478 11.32 0.00 38.06 6.13
506 507 4.954202 TCAATCGGATATTAGTATCGGGCT 59.046 41.667 11.32 0.31 38.06 5.19
507 508 4.920640 ATCGGATATTAGTATCGGGCTG 57.079 45.455 11.32 0.00 38.06 4.85
508 509 2.426024 TCGGATATTAGTATCGGGCTGC 59.574 50.000 11.32 0.00 38.06 5.25
509 510 2.481449 CGGATATTAGTATCGGGCTGCC 60.481 54.545 11.05 11.05 38.06 4.85
510 511 2.481449 GGATATTAGTATCGGGCTGCCG 60.481 54.545 13.40 8.37 38.06 5.69
511 512 1.913778 TATTAGTATCGGGCTGCCGA 58.086 50.000 13.40 13.69 46.30 5.54
512 513 0.603569 ATTAGTATCGGGCTGCCGAG 59.396 55.000 13.40 9.54 45.45 4.63
532 533 2.094182 AGTGCCGACATACGAAGTTCAT 60.094 45.455 3.32 0.00 37.78 2.57
551 552 5.017294 TCATAGAATTACGCCACACATCA 57.983 39.130 0.00 0.00 0.00 3.07
580 581 4.643387 ACACTTGCCTGGGCCGTC 62.643 66.667 9.28 0.00 41.09 4.79
591 592 2.106683 GGGCCGTCCACGAGAAATG 61.107 63.158 0.00 0.00 43.02 2.32
598 599 2.345641 CGTCCACGAGAAATGCACTAAG 59.654 50.000 0.00 0.00 43.02 2.18
612 613 2.354203 GCACTAAGCAGCAAGGTCTACT 60.354 50.000 0.00 0.00 44.79 2.57
615 616 5.479306 CACTAAGCAGCAAGGTCTACTTAA 58.521 41.667 0.00 0.00 37.29 1.85
616 617 5.348997 CACTAAGCAGCAAGGTCTACTTAAC 59.651 44.000 0.00 0.00 37.29 2.01
617 618 3.336138 AGCAGCAAGGTCTACTTAACC 57.664 47.619 0.00 0.00 37.29 2.85
618 619 2.637872 AGCAGCAAGGTCTACTTAACCA 59.362 45.455 0.00 0.00 39.39 3.67
619 620 3.072476 AGCAGCAAGGTCTACTTAACCAA 59.928 43.478 0.00 0.00 39.39 3.67
626 647 6.599437 CAAGGTCTACTTAACCAAATCAACG 58.401 40.000 0.00 0.00 39.39 4.10
627 648 6.105397 AGGTCTACTTAACCAAATCAACGA 57.895 37.500 0.00 0.00 39.39 3.85
676 716 7.315247 ACAGTAATACGTACGTGTAACCATA 57.685 36.000 30.25 10.06 37.81 2.74
681 721 2.819608 ACGTACGTGTAACCATACCAGT 59.180 45.455 22.14 0.00 0.00 4.00
995 1035 4.803426 GGCCACACGCTCTCTCGG 62.803 72.222 0.00 0.00 37.74 4.63
996 1036 3.749064 GCCACACGCTCTCTCGGA 61.749 66.667 0.00 0.00 0.00 4.55
1084 1127 3.684103 GATTGACTGATCGACGAGACT 57.316 47.619 3.01 0.00 0.00 3.24
1085 1128 3.613563 GATTGACTGATCGACGAGACTC 58.386 50.000 3.01 0.00 0.00 3.36
1187 1230 9.725019 AGAATTTCCTTTTAATTTTGGGTGATC 57.275 29.630 0.00 0.00 0.00 2.92
1195 1238 7.938563 TTTAATTTTGGGTGATCTGTTTTCG 57.061 32.000 0.00 0.00 0.00 3.46
1219 1262 4.035558 TGTGCTAAGATTTTGGATCATCGC 59.964 41.667 0.00 0.00 0.00 4.58
1220 1263 3.565482 TGCTAAGATTTTGGATCATCGCC 59.435 43.478 0.00 0.00 0.00 5.54
1240 1283 1.903404 CCCCCAGTGTTGTTCCTGC 60.903 63.158 0.00 0.00 0.00 4.85
1262 1305 2.174639 TGATTTACCGCCTGGATTGGAT 59.825 45.455 0.00 0.00 39.21 3.41
1344 1389 3.995048 GACTAGAACAAGAAACCTTCCCG 59.005 47.826 0.00 0.00 0.00 5.14
1425 1470 4.347453 CACGCTTTGCTGTGGCCC 62.347 66.667 0.00 0.00 37.74 5.80
1426 1471 4.892965 ACGCTTTGCTGTGGCCCA 62.893 61.111 0.00 0.00 37.74 5.36
1467 1512 7.505585 TGTCTGTTTCAAGAAATAGATTGGGTT 59.494 33.333 20.04 0.00 45.64 4.11
1468 1513 8.360390 GTCTGTTTCAAGAAATAGATTGGGTTT 58.640 33.333 20.04 0.00 45.64 3.27
1469 1514 8.923270 TCTGTTTCAAGAAATAGATTGGGTTTT 58.077 29.630 15.23 0.00 41.49 2.43
1470 1515 9.196552 CTGTTTCAAGAAATAGATTGGGTTTTC 57.803 33.333 12.28 0.00 40.54 2.29
1528 1574 1.176619 CCAGGGAACACCGGTTTTCC 61.177 60.000 34.97 34.97 46.96 3.13
2099 2146 1.211703 TCTCTGGTGAGTGGTTTGCAA 59.788 47.619 0.00 0.00 40.98 4.08
2149 2196 2.577606 TGCGGAGAGAATTGGGAAAA 57.422 45.000 0.00 0.00 0.00 2.29
2207 2254 9.778993 CATCAAGTCCTGTGTGATATTAAAAAG 57.221 33.333 0.00 0.00 30.85 2.27
2426 2569 4.085357 TGTACTAGCATTTATGGGGCAG 57.915 45.455 0.00 0.00 0.00 4.85
2493 2636 1.832167 TGGGTTTGGTGGCTTGCTC 60.832 57.895 0.00 0.00 0.00 4.26
2494 2637 1.531602 GGGTTTGGTGGCTTGCTCT 60.532 57.895 0.00 0.00 0.00 4.09
2495 2638 0.251165 GGGTTTGGTGGCTTGCTCTA 60.251 55.000 0.00 0.00 0.00 2.43
2496 2639 1.616994 GGGTTTGGTGGCTTGCTCTAT 60.617 52.381 0.00 0.00 0.00 1.98
2497 2640 2.356741 GGGTTTGGTGGCTTGCTCTATA 60.357 50.000 0.00 0.00 0.00 1.31
2498 2641 2.945668 GGTTTGGTGGCTTGCTCTATAG 59.054 50.000 0.00 0.00 0.00 1.31
2499 2642 3.610911 GTTTGGTGGCTTGCTCTATAGT 58.389 45.455 0.00 0.00 0.00 2.12
2500 2643 4.383770 GGTTTGGTGGCTTGCTCTATAGTA 60.384 45.833 0.00 0.00 0.00 1.82
2890 3161 8.755696 TGTTAATCAAACAAGGCATCAAATAC 57.244 30.769 0.00 0.00 45.11 1.89
2943 3214 6.613755 ATTACTTTATTACACCCGCATCAC 57.386 37.500 0.00 0.00 0.00 3.06
2980 3251 7.092623 TGGCTTCCTGTTATTGGTTCTCTTATA 60.093 37.037 0.00 0.00 0.00 0.98
2981 3252 7.939588 GGCTTCCTGTTATTGGTTCTCTTATAT 59.060 37.037 0.00 0.00 0.00 0.86
3048 3319 4.133013 ACGGTCTTTGCGGAATAATAGT 57.867 40.909 0.00 0.00 0.00 2.12
3070 3341 4.178545 ACTGCAATTGCTTACCATGTTC 57.821 40.909 29.37 0.00 42.66 3.18
3078 3349 7.546358 CAATTGCTTACCATGTTCCTGATTTA 58.454 34.615 0.00 0.00 0.00 1.40
3094 3365 6.214615 TCCTGATTTACCATTTACTCCAGTCA 59.785 38.462 0.00 0.00 0.00 3.41
3123 3394 6.599244 CCTGCATTTTATTGGTTCTAGAGTGA 59.401 38.462 0.00 0.00 0.00 3.41
3125 3396 8.579850 TGCATTTTATTGGTTCTAGAGTGATT 57.420 30.769 0.00 0.00 0.00 2.57
3157 3436 6.209192 TGAACATGATAAAGCCACTTCATTGT 59.791 34.615 0.00 0.00 0.00 2.71
3181 3460 5.185442 TCTGCTTGTGCCATTTTGATTATCA 59.815 36.000 0.00 0.00 38.71 2.15
3190 3469 7.063308 GTGCCATTTTGATTATCAACGATTGTT 59.937 33.333 7.19 0.00 35.89 2.83
3344 3623 6.927294 TTCTGACACTCTTCTTTCCTTTTC 57.073 37.500 0.00 0.00 0.00 2.29
3351 3630 1.464997 CTTCTTTCCTTTTCCCGCTCG 59.535 52.381 0.00 0.00 0.00 5.03
3375 3654 6.558909 GGCAGATGGAAAGAATTTTGTAGAG 58.441 40.000 0.00 0.00 39.27 2.43
3427 3706 4.215908 TCTGGAATCTCCGTTAGCTATGT 58.784 43.478 0.00 0.00 40.17 2.29
3944 4230 3.080300 TGTTGTTGAGGAAACCTGTGT 57.920 42.857 0.00 0.00 38.06 3.72
3967 4253 3.001736 GGTTATTTCTGTCGCTGCTGATC 59.998 47.826 0.00 0.00 0.00 2.92
3968 4254 1.284657 ATTTCTGTCGCTGCTGATCG 58.715 50.000 0.00 0.00 0.00 3.69
3970 4256 0.733909 TTCTGTCGCTGCTGATCGTG 60.734 55.000 0.00 0.00 0.00 4.35
3973 4259 1.284297 TGTCGCTGCTGATCGTGTTG 61.284 55.000 0.00 0.00 0.00 3.33
3974 4260 1.008875 GTCGCTGCTGATCGTGTTGA 61.009 55.000 0.00 0.00 0.00 3.18
3976 4262 0.723414 CGCTGCTGATCGTGTTGATT 59.277 50.000 0.00 0.00 37.47 2.57
3980 4266 3.618594 GCTGCTGATCGTGTTGATTCTTA 59.381 43.478 0.00 0.00 37.47 2.10
3982 4268 4.820897 TGCTGATCGTGTTGATTCTTACT 58.179 39.130 0.00 0.00 37.47 2.24
3983 4269 5.961272 TGCTGATCGTGTTGATTCTTACTA 58.039 37.500 0.00 0.00 37.47 1.82
3984 4270 5.805486 TGCTGATCGTGTTGATTCTTACTAC 59.195 40.000 0.00 0.00 37.47 2.73
3986 4272 7.148137 TGCTGATCGTGTTGATTCTTACTACTA 60.148 37.037 0.00 0.00 37.47 1.82
3987 4273 7.377397 GCTGATCGTGTTGATTCTTACTACTAG 59.623 40.741 0.00 0.00 37.47 2.57
3988 4274 8.277490 TGATCGTGTTGATTCTTACTACTAGT 57.723 34.615 0.00 0.00 37.47 2.57
3989 4275 8.182227 TGATCGTGTTGATTCTTACTACTAGTG 58.818 37.037 5.39 0.00 37.47 2.74
3991 4277 7.749808 TCGTGTTGATTCTTACTACTAGTGAG 58.250 38.462 5.39 2.21 33.58 3.51
4017 4448 2.575993 CTCCCTGCACTGTCCGAG 59.424 66.667 0.00 0.00 0.00 4.63
4019 4450 2.997315 CCCTGCACTGTCCGAGGA 60.997 66.667 0.00 0.00 0.00 3.71
4087 4518 2.168106 CTGAGACTGGACTGGAGATTGG 59.832 54.545 0.00 0.00 0.00 3.16
4138 4588 4.151335 CCTGTTGATCACTTCTTCTCAACG 59.849 45.833 0.00 5.10 46.57 4.10
4154 4604 5.063204 TCTCAACGAAATGGTCAACTTCAT 58.937 37.500 0.00 0.00 0.00 2.57
4155 4605 5.530915 TCTCAACGAAATGGTCAACTTCATT 59.469 36.000 0.00 0.00 35.37 2.57
4156 4606 6.039270 TCTCAACGAAATGGTCAACTTCATTT 59.961 34.615 0.00 0.00 43.64 2.32
4157 4607 7.227711 TCTCAACGAAATGGTCAACTTCATTTA 59.772 33.333 0.00 0.00 41.80 1.40
4242 4692 6.262273 GCGATTATGGAAAGAATTTGGGACTA 59.738 38.462 0.00 0.00 39.27 2.59
4253 4703 1.276622 TTGGGACTAGGGACTTCTGC 58.723 55.000 0.00 0.00 41.75 4.26
4297 4747 0.391793 TCGGCGCATCACCACATTTA 60.392 50.000 10.83 0.00 0.00 1.40
4299 4749 1.135546 CGGCGCATCACCACATTTAAA 60.136 47.619 10.83 0.00 0.00 1.52
4355 4826 3.314080 AGATGAACGCCGTTTCTTTCAAA 59.686 39.130 3.07 0.00 31.96 2.69
4378 4849 3.127721 GGTAGACAAAGATTTGCAGGAGC 59.872 47.826 5.23 0.00 41.79 4.70
4385 4856 2.983229 AGATTTGCAGGAGCTGTAGTG 58.017 47.619 0.00 0.00 42.74 2.74
4428 4899 2.617308 TCTAAGGACGTAGCCAATCTCG 59.383 50.000 0.00 0.00 0.00 4.04
4455 4926 1.828595 TGCGAGCCTCCTTATTACACA 59.171 47.619 0.00 0.00 0.00 3.72
4456 4927 2.434336 TGCGAGCCTCCTTATTACACAT 59.566 45.455 0.00 0.00 0.00 3.21
4457 4928 3.118408 TGCGAGCCTCCTTATTACACATT 60.118 43.478 0.00 0.00 0.00 2.71
4458 4929 3.877508 GCGAGCCTCCTTATTACACATTT 59.122 43.478 0.00 0.00 0.00 2.32
4459 4930 5.054477 GCGAGCCTCCTTATTACACATTTA 58.946 41.667 0.00 0.00 0.00 1.40
4460 4931 5.050295 GCGAGCCTCCTTATTACACATTTAC 60.050 44.000 0.00 0.00 0.00 2.01
4461 4932 6.046593 CGAGCCTCCTTATTACACATTTACA 58.953 40.000 0.00 0.00 0.00 2.41
4462 4933 6.018994 CGAGCCTCCTTATTACACATTTACAC 60.019 42.308 0.00 0.00 0.00 2.90
4463 4934 6.120220 AGCCTCCTTATTACACATTTACACC 58.880 40.000 0.00 0.00 0.00 4.16
4464 4935 5.298527 GCCTCCTTATTACACATTTACACCC 59.701 44.000 0.00 0.00 0.00 4.61
4465 4936 6.419791 CCTCCTTATTACACATTTACACCCA 58.580 40.000 0.00 0.00 0.00 4.51
4466 4937 6.317893 CCTCCTTATTACACATTTACACCCAC 59.682 42.308 0.00 0.00 0.00 4.61
4467 4938 7.023171 TCCTTATTACACATTTACACCCACT 57.977 36.000 0.00 0.00 0.00 4.00
4468 4939 7.107542 TCCTTATTACACATTTACACCCACTC 58.892 38.462 0.00 0.00 0.00 3.51
4469 4940 6.317893 CCTTATTACACATTTACACCCACTCC 59.682 42.308 0.00 0.00 0.00 3.85
4470 4941 2.178912 ACACATTTACACCCACTCCG 57.821 50.000 0.00 0.00 0.00 4.63
4471 4942 1.418637 ACACATTTACACCCACTCCGT 59.581 47.619 0.00 0.00 0.00 4.69
4472 4943 2.158726 ACACATTTACACCCACTCCGTT 60.159 45.455 0.00 0.00 0.00 4.44
4473 4944 2.482721 CACATTTACACCCACTCCGTTC 59.517 50.000 0.00 0.00 0.00 3.95
4474 4945 2.105134 ACATTTACACCCACTCCGTTCA 59.895 45.455 0.00 0.00 0.00 3.18
4475 4946 2.243602 TTTACACCCACTCCGTTCAC 57.756 50.000 0.00 0.00 0.00 3.18
4476 4947 1.121378 TTACACCCACTCCGTTCACA 58.879 50.000 0.00 0.00 0.00 3.58
4477 4948 0.677288 TACACCCACTCCGTTCACAG 59.323 55.000 0.00 0.00 0.00 3.66
4478 4949 1.961277 CACCCACTCCGTTCACAGC 60.961 63.158 0.00 0.00 0.00 4.40
4479 4950 2.425592 CCCACTCCGTTCACAGCA 59.574 61.111 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.768215 GGCTCCAACTAGTAGTGTAGGTT 59.232 47.826 2.90 0.00 0.00 3.50
1 2 3.363627 GGCTCCAACTAGTAGTGTAGGT 58.636 50.000 2.90 0.00 0.00 3.08
2 3 2.358267 CGGCTCCAACTAGTAGTGTAGG 59.642 54.545 2.90 6.94 0.00 3.18
3 4 3.276857 TCGGCTCCAACTAGTAGTGTAG 58.723 50.000 2.90 3.29 0.00 2.74
4 5 3.276857 CTCGGCTCCAACTAGTAGTGTA 58.723 50.000 2.90 0.00 0.00 2.90
5 6 2.093106 CTCGGCTCCAACTAGTAGTGT 58.907 52.381 2.90 0.00 0.00 3.55
6 7 1.405821 CCTCGGCTCCAACTAGTAGTG 59.594 57.143 2.90 0.00 0.00 2.74
7 8 1.765230 CCTCGGCTCCAACTAGTAGT 58.235 55.000 0.00 0.00 0.00 2.73
8 9 0.386113 GCCTCGGCTCCAACTAGTAG 59.614 60.000 0.00 0.00 38.26 2.57
9 10 0.323999 TGCCTCGGCTCCAACTAGTA 60.324 55.000 9.65 0.00 42.51 1.82
10 11 0.978146 ATGCCTCGGCTCCAACTAGT 60.978 55.000 9.65 0.00 42.51 2.57
11 12 0.249657 GATGCCTCGGCTCCAACTAG 60.250 60.000 9.65 0.00 42.51 2.57
12 13 0.687757 AGATGCCTCGGCTCCAACTA 60.688 55.000 9.65 0.00 42.51 2.24
13 14 1.992277 AGATGCCTCGGCTCCAACT 60.992 57.895 9.65 0.00 42.51 3.16
14 15 1.817099 CAGATGCCTCGGCTCCAAC 60.817 63.158 9.65 0.00 42.51 3.77
15 16 2.586245 CAGATGCCTCGGCTCCAA 59.414 61.111 9.65 0.00 42.51 3.53
16 17 3.473647 CCAGATGCCTCGGCTCCA 61.474 66.667 9.65 0.00 42.51 3.86
17 18 2.447586 GATCCAGATGCCTCGGCTCC 62.448 65.000 9.65 1.05 42.51 4.70
18 19 1.005156 GATCCAGATGCCTCGGCTC 60.005 63.158 9.65 4.62 42.51 4.70
19 20 2.515071 GGATCCAGATGCCTCGGCT 61.515 63.158 6.95 0.00 42.51 5.52
20 21 2.031768 GGATCCAGATGCCTCGGC 59.968 66.667 6.95 0.00 42.35 5.54
21 22 2.746359 GGGATCCAGATGCCTCGG 59.254 66.667 15.23 0.00 44.78 4.63
26 27 1.072159 CGGAAGGGGATCCAGATGC 59.928 63.158 15.23 2.68 39.61 3.91
27 28 1.072159 GCGGAAGGGGATCCAGATG 59.928 63.158 15.23 0.00 39.61 2.90
28 29 2.150051 GGCGGAAGGGGATCCAGAT 61.150 63.158 15.23 0.00 39.61 2.90
29 30 2.768344 GGCGGAAGGGGATCCAGA 60.768 66.667 15.23 0.00 39.61 3.86
30 31 3.089874 TGGCGGAAGGGGATCCAG 61.090 66.667 15.23 0.00 39.61 3.86
31 32 3.407967 GTGGCGGAAGGGGATCCA 61.408 66.667 15.23 0.00 39.61 3.41
32 33 3.090532 AGTGGCGGAAGGGGATCC 61.091 66.667 1.92 1.92 36.05 3.36
33 34 2.190578 CAGTGGCGGAAGGGGATC 59.809 66.667 0.00 0.00 0.00 3.36
34 35 3.411517 CCAGTGGCGGAAGGGGAT 61.412 66.667 0.00 0.00 0.00 3.85
45 46 3.429141 CGCTCAAGCAGCCAGTGG 61.429 66.667 4.20 4.20 46.74 4.00
46 47 3.429141 CCGCTCAAGCAGCCAGTG 61.429 66.667 2.50 0.00 46.74 3.66
60 61 3.869272 CGTTGATGAGCCTGCCGC 61.869 66.667 0.00 0.00 37.98 6.53
61 62 1.699656 CTTCGTTGATGAGCCTGCCG 61.700 60.000 0.00 0.00 0.00 5.69
62 63 1.986575 GCTTCGTTGATGAGCCTGCC 61.987 60.000 0.00 0.00 0.00 4.85
63 64 1.023513 AGCTTCGTTGATGAGCCTGC 61.024 55.000 0.00 0.00 0.00 4.85
64 65 1.129998 CAAGCTTCGTTGATGAGCCTG 59.870 52.381 0.00 0.00 0.00 4.85
65 66 1.446907 CAAGCTTCGTTGATGAGCCT 58.553 50.000 0.00 0.00 0.00 4.58
66 67 0.449388 CCAAGCTTCGTTGATGAGCC 59.551 55.000 0.00 0.00 0.00 4.70
67 68 1.396301 CTCCAAGCTTCGTTGATGAGC 59.604 52.381 0.00 0.00 0.00 4.26
68 69 2.005451 CCTCCAAGCTTCGTTGATGAG 58.995 52.381 0.00 0.00 0.00 2.90
69 70 1.339055 CCCTCCAAGCTTCGTTGATGA 60.339 52.381 0.00 0.00 0.00 2.92
70 71 1.089920 CCCTCCAAGCTTCGTTGATG 58.910 55.000 0.00 0.00 0.00 3.07
71 72 0.035056 CCCCTCCAAGCTTCGTTGAT 60.035 55.000 0.00 0.00 0.00 2.57
72 73 1.374947 CCCCTCCAAGCTTCGTTGA 59.625 57.895 0.00 0.00 0.00 3.18
73 74 1.675641 CCCCCTCCAAGCTTCGTTG 60.676 63.158 0.00 0.00 0.00 4.10
74 75 2.154074 ACCCCCTCCAAGCTTCGTT 61.154 57.895 0.00 0.00 0.00 3.85
75 76 2.529389 ACCCCCTCCAAGCTTCGT 60.529 61.111 0.00 0.00 0.00 3.85
76 77 1.915078 ATCACCCCCTCCAAGCTTCG 61.915 60.000 0.00 0.00 0.00 3.79
77 78 0.106967 GATCACCCCCTCCAAGCTTC 60.107 60.000 0.00 0.00 0.00 3.86
78 79 1.915078 CGATCACCCCCTCCAAGCTT 61.915 60.000 0.00 0.00 0.00 3.74
79 80 2.370445 CGATCACCCCCTCCAAGCT 61.370 63.158 0.00 0.00 0.00 3.74
80 81 2.190578 CGATCACCCCCTCCAAGC 59.809 66.667 0.00 0.00 0.00 4.01
81 82 2.190578 GCGATCACCCCCTCCAAG 59.809 66.667 0.00 0.00 0.00 3.61
82 83 3.407967 GGCGATCACCCCCTCCAA 61.408 66.667 0.00 0.00 0.00 3.53
90 91 3.161450 TGGGCTAGGGCGATCACC 61.161 66.667 0.00 0.00 39.81 4.02
91 92 2.423446 CTGGGCTAGGGCGATCAC 59.577 66.667 0.00 0.00 39.81 3.06
92 93 2.844362 CCTGGGCTAGGGCGATCA 60.844 66.667 9.42 0.00 43.33 2.92
126 127 2.035783 GGGGCCCTGGTCTTGAAC 59.964 66.667 24.38 0.00 0.00 3.18
127 128 1.856873 ATGGGGCCCTGGTCTTGAA 60.857 57.895 25.93 0.00 0.00 2.69
128 129 2.204291 ATGGGGCCCTGGTCTTGA 60.204 61.111 25.93 0.00 0.00 3.02
129 130 2.043652 CATGGGGCCCTGGTCTTG 60.044 66.667 25.93 9.49 0.00 3.02
130 131 4.066139 GCATGGGGCCCTGGTCTT 62.066 66.667 25.93 0.00 36.11 3.01
132 133 4.828296 CAGCATGGGGCCCTGGTC 62.828 72.222 25.93 5.04 46.50 4.02
135 136 3.812544 TAGCAGCATGGGGCCCTG 61.813 66.667 25.93 19.72 46.50 4.45
136 137 3.813724 GTAGCAGCATGGGGCCCT 61.814 66.667 25.93 6.39 46.50 5.19
137 138 4.127744 TGTAGCAGCATGGGGCCC 62.128 66.667 18.17 18.17 46.50 5.80
138 139 2.517875 CTGTAGCAGCATGGGGCC 60.518 66.667 0.00 0.00 46.50 5.80
139 140 2.117156 CACTGTAGCAGCATGGGGC 61.117 63.158 0.00 0.00 45.30 5.80
140 141 2.117156 GCACTGTAGCAGCATGGGG 61.117 63.158 0.00 0.00 34.37 4.96
141 142 2.466982 CGCACTGTAGCAGCATGGG 61.467 63.158 0.00 0.00 34.37 4.00
142 143 3.095911 CGCACTGTAGCAGCATGG 58.904 61.111 0.00 0.00 34.37 3.66
143 144 2.392974 TGCGCACTGTAGCAGCATG 61.393 57.895 5.66 0.00 38.44 4.06
144 145 2.046988 TGCGCACTGTAGCAGCAT 60.047 55.556 5.66 0.00 38.44 3.79
145 146 2.153547 TAGTGCGCACTGTAGCAGCA 62.154 55.000 44.69 25.02 44.70 4.41
146 147 0.807667 ATAGTGCGCACTGTAGCAGC 60.808 55.000 44.69 16.65 44.70 5.25
147 148 0.926155 CATAGTGCGCACTGTAGCAG 59.074 55.000 44.69 26.33 44.70 4.24
148 149 1.083806 GCATAGTGCGCACTGTAGCA 61.084 55.000 44.69 29.48 42.52 3.49
149 150 1.638467 GCATAGTGCGCACTGTAGC 59.362 57.895 44.69 37.76 42.52 3.58
158 159 7.754834 TGTTTGTTAACTGCAGCATAGTGCG 62.755 44.000 15.27 0.00 40.69 5.34
159 160 3.829886 TTGTTAACTGCAGCATAGTGC 57.170 42.857 15.27 3.14 45.46 4.40
160 161 5.107109 TGTTTGTTAACTGCAGCATAGTG 57.893 39.130 15.27 0.00 35.24 2.74
161 162 5.766150 TTGTTTGTTAACTGCAGCATAGT 57.234 34.783 15.27 0.00 35.24 2.12
162 163 5.061311 GCATTGTTTGTTAACTGCAGCATAG 59.939 40.000 15.27 0.00 36.19 2.23
163 164 4.922692 GCATTGTTTGTTAACTGCAGCATA 59.077 37.500 15.27 4.50 36.19 3.14
164 165 3.742369 GCATTGTTTGTTAACTGCAGCAT 59.258 39.130 15.27 5.65 36.19 3.79
165 166 3.122297 GCATTGTTTGTTAACTGCAGCA 58.878 40.909 15.27 0.00 36.19 4.41
166 167 3.383761 AGCATTGTTTGTTAACTGCAGC 58.616 40.909 15.27 0.00 37.70 5.25
167 168 5.284079 AGAAGCATTGTTTGTTAACTGCAG 58.716 37.500 13.48 13.48 37.70 4.41
168 169 5.261209 AGAAGCATTGTTTGTTAACTGCA 57.739 34.783 15.15 5.84 37.70 4.41
169 170 5.748152 TGAAGAAGCATTGTTTGTTAACTGC 59.252 36.000 7.22 7.13 36.32 4.40
170 171 6.075415 CGTGAAGAAGCATTGTTTGTTAACTG 60.075 38.462 7.22 0.00 28.54 3.16
171 172 5.971202 CGTGAAGAAGCATTGTTTGTTAACT 59.029 36.000 7.22 0.00 28.54 2.24
172 173 5.331532 GCGTGAAGAAGCATTGTTTGTTAAC 60.332 40.000 0.00 0.00 28.54 2.01
173 174 4.737765 GCGTGAAGAAGCATTGTTTGTTAA 59.262 37.500 0.00 0.00 28.54 2.01
174 175 4.286910 GCGTGAAGAAGCATTGTTTGTTA 58.713 39.130 0.00 0.00 28.54 2.41
175 176 3.115554 GCGTGAAGAAGCATTGTTTGTT 58.884 40.909 0.00 0.00 28.54 2.83
176 177 2.543653 GGCGTGAAGAAGCATTGTTTGT 60.544 45.455 0.00 0.00 28.54 2.83
177 178 2.053627 GGCGTGAAGAAGCATTGTTTG 58.946 47.619 0.00 0.00 28.54 2.93
178 179 1.000274 GGGCGTGAAGAAGCATTGTTT 60.000 47.619 0.00 0.00 28.54 2.83
179 180 0.598065 GGGCGTGAAGAAGCATTGTT 59.402 50.000 0.00 0.00 32.50 2.83
180 181 0.250901 AGGGCGTGAAGAAGCATTGT 60.251 50.000 0.00 0.00 34.54 2.71
181 182 1.667724 CTAGGGCGTGAAGAAGCATTG 59.332 52.381 0.00 0.00 34.54 2.82
182 183 1.279271 ACTAGGGCGTGAAGAAGCATT 59.721 47.619 0.00 0.00 34.54 3.56
183 184 0.905357 ACTAGGGCGTGAAGAAGCAT 59.095 50.000 0.00 0.00 34.54 3.79
184 185 0.246635 GACTAGGGCGTGAAGAAGCA 59.753 55.000 0.00 0.00 34.54 3.91
185 186 0.460459 GGACTAGGGCGTGAAGAAGC 60.460 60.000 0.00 0.00 0.00 3.86
186 187 0.175989 GGGACTAGGGCGTGAAGAAG 59.824 60.000 0.00 0.00 0.00 2.85
187 188 0.543410 TGGGACTAGGGCGTGAAGAA 60.543 55.000 0.00 0.00 0.00 2.52
188 189 0.970937 CTGGGACTAGGGCGTGAAGA 60.971 60.000 0.00 0.00 0.00 2.87
189 190 1.517832 CTGGGACTAGGGCGTGAAG 59.482 63.158 0.00 0.00 0.00 3.02
190 191 2.656069 GCTGGGACTAGGGCGTGAA 61.656 63.158 0.00 0.00 0.00 3.18
191 192 3.075005 GCTGGGACTAGGGCGTGA 61.075 66.667 0.00 0.00 0.00 4.35
192 193 4.162690 GGCTGGGACTAGGGCGTG 62.163 72.222 0.00 0.00 0.00 5.34
223 224 1.229336 ATCTAGGATCCCAGGCCGG 60.229 63.158 8.55 0.00 0.00 6.13
224 225 1.261238 GGATCTAGGATCCCAGGCCG 61.261 65.000 8.55 0.00 32.09 6.13
225 226 1.261238 CGGATCTAGGATCCCAGGCC 61.261 65.000 17.65 8.87 34.76 5.19
226 227 1.893919 GCGGATCTAGGATCCCAGGC 61.894 65.000 17.65 12.78 34.76 4.85
227 228 1.261238 GGCGGATCTAGGATCCCAGG 61.261 65.000 17.65 7.87 34.76 4.45
228 229 0.542938 TGGCGGATCTAGGATCCCAG 60.543 60.000 17.65 4.02 34.76 4.45
229 230 0.832135 GTGGCGGATCTAGGATCCCA 60.832 60.000 17.65 10.05 34.76 4.37
230 231 0.543174 AGTGGCGGATCTAGGATCCC 60.543 60.000 17.65 11.67 34.76 3.85
231 232 0.605589 CAGTGGCGGATCTAGGATCC 59.394 60.000 14.58 14.58 34.90 3.36
232 233 0.037790 GCAGTGGCGGATCTAGGATC 60.038 60.000 0.00 0.00 0.00 3.36
233 234 2.053618 GCAGTGGCGGATCTAGGAT 58.946 57.895 0.00 0.00 0.00 3.24
234 235 3.538614 GCAGTGGCGGATCTAGGA 58.461 61.111 0.00 0.00 0.00 2.94
248 249 0.173481 TGCTTACACGGCTAGAGCAG 59.827 55.000 3.54 1.60 44.36 4.24
249 250 0.108804 GTGCTTACACGGCTAGAGCA 60.109 55.000 3.54 0.00 38.95 4.26
250 251 2.666989 GTGCTTACACGGCTAGAGC 58.333 57.895 0.00 0.00 36.98 4.09
259 260 1.124477 GTTTCTCTCGCGTGCTTACAC 59.876 52.381 5.77 0.00 43.76 2.90
260 261 1.415374 GTTTCTCTCGCGTGCTTACA 58.585 50.000 5.77 0.00 0.00 2.41
261 262 0.714439 GGTTTCTCTCGCGTGCTTAC 59.286 55.000 5.77 0.22 0.00 2.34
262 263 0.731514 CGGTTTCTCTCGCGTGCTTA 60.732 55.000 5.77 0.00 0.00 3.09
263 264 2.022129 CGGTTTCTCTCGCGTGCTT 61.022 57.895 5.77 0.00 0.00 3.91
264 265 1.859427 TACGGTTTCTCTCGCGTGCT 61.859 55.000 5.77 0.00 0.00 4.40
265 266 1.005294 TTACGGTTTCTCTCGCGTGC 61.005 55.000 5.77 0.00 0.00 5.34
266 267 0.706729 GTTACGGTTTCTCTCGCGTG 59.293 55.000 5.77 3.13 0.00 5.34
267 268 0.595095 AGTTACGGTTTCTCTCGCGT 59.405 50.000 5.77 0.00 0.00 6.01
268 269 1.385743 CAAGTTACGGTTTCTCTCGCG 59.614 52.381 0.00 0.00 0.00 5.87
269 270 1.725164 CCAAGTTACGGTTTCTCTCGC 59.275 52.381 0.00 0.00 0.00 5.03
270 271 3.243336 CTCCAAGTTACGGTTTCTCTCG 58.757 50.000 0.00 0.00 0.00 4.04
271 272 3.586892 CCTCCAAGTTACGGTTTCTCTC 58.413 50.000 0.00 0.00 0.00 3.20
272 273 2.302157 CCCTCCAAGTTACGGTTTCTCT 59.698 50.000 0.00 0.00 0.00 3.10
273 274 2.614734 CCCCTCCAAGTTACGGTTTCTC 60.615 54.545 0.00 0.00 0.00 2.87
274 275 1.350019 CCCCTCCAAGTTACGGTTTCT 59.650 52.381 0.00 0.00 0.00 2.52
275 276 1.348696 TCCCCTCCAAGTTACGGTTTC 59.651 52.381 0.00 0.00 0.00 2.78
276 277 1.350019 CTCCCCTCCAAGTTACGGTTT 59.650 52.381 0.00 0.00 0.00 3.27
277 278 0.981943 CTCCCCTCCAAGTTACGGTT 59.018 55.000 0.00 0.00 0.00 4.44
278 279 0.115745 TCTCCCCTCCAAGTTACGGT 59.884 55.000 0.00 0.00 0.00 4.83
279 280 1.413077 GATCTCCCCTCCAAGTTACGG 59.587 57.143 0.00 0.00 0.00 4.02
280 281 2.108168 TGATCTCCCCTCCAAGTTACG 58.892 52.381 0.00 0.00 0.00 3.18
281 282 3.263425 TGTTGATCTCCCCTCCAAGTTAC 59.737 47.826 0.00 0.00 0.00 2.50
282 283 3.526899 TGTTGATCTCCCCTCCAAGTTA 58.473 45.455 0.00 0.00 0.00 2.24
283 284 2.348472 TGTTGATCTCCCCTCCAAGTT 58.652 47.619 0.00 0.00 0.00 2.66
284 285 2.044793 TGTTGATCTCCCCTCCAAGT 57.955 50.000 0.00 0.00 0.00 3.16
285 286 2.573462 TCTTGTTGATCTCCCCTCCAAG 59.427 50.000 0.00 0.00 0.00 3.61
286 287 2.305927 GTCTTGTTGATCTCCCCTCCAA 59.694 50.000 0.00 0.00 0.00 3.53
287 288 1.909302 GTCTTGTTGATCTCCCCTCCA 59.091 52.381 0.00 0.00 0.00 3.86
288 289 1.134670 CGTCTTGTTGATCTCCCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
289 290 1.740718 GCGTCTTGTTGATCTCCCCTC 60.741 57.143 0.00 0.00 0.00 4.30
290 291 0.250513 GCGTCTTGTTGATCTCCCCT 59.749 55.000 0.00 0.00 0.00 4.79
291 292 0.250513 AGCGTCTTGTTGATCTCCCC 59.749 55.000 0.00 0.00 0.00 4.81
292 293 2.541556 GTAGCGTCTTGTTGATCTCCC 58.458 52.381 0.00 0.00 0.00 4.30
293 294 2.094182 TGGTAGCGTCTTGTTGATCTCC 60.094 50.000 0.00 0.00 0.00 3.71
294 295 2.924290 GTGGTAGCGTCTTGTTGATCTC 59.076 50.000 0.00 0.00 0.00 2.75
295 296 2.299013 TGTGGTAGCGTCTTGTTGATCT 59.701 45.455 0.00 0.00 0.00 2.75
296 297 2.668457 CTGTGGTAGCGTCTTGTTGATC 59.332 50.000 0.00 0.00 0.00 2.92
297 298 2.037251 ACTGTGGTAGCGTCTTGTTGAT 59.963 45.455 0.00 0.00 0.00 2.57
298 299 1.411246 ACTGTGGTAGCGTCTTGTTGA 59.589 47.619 0.00 0.00 0.00 3.18
299 300 1.865865 ACTGTGGTAGCGTCTTGTTG 58.134 50.000 0.00 0.00 0.00 3.33
300 301 2.614829 AACTGTGGTAGCGTCTTGTT 57.385 45.000 0.00 0.00 0.00 2.83
301 302 3.955650 ATAACTGTGGTAGCGTCTTGT 57.044 42.857 0.00 0.00 0.00 3.16
302 303 4.688879 TCAAATAACTGTGGTAGCGTCTTG 59.311 41.667 0.00 0.00 0.00 3.02
303 304 4.890088 TCAAATAACTGTGGTAGCGTCTT 58.110 39.130 0.00 0.00 0.00 3.01
304 305 4.530710 TCAAATAACTGTGGTAGCGTCT 57.469 40.909 0.00 0.00 0.00 4.18
305 306 5.560148 CAATCAAATAACTGTGGTAGCGTC 58.440 41.667 0.00 0.00 0.00 5.19
306 307 4.142687 GCAATCAAATAACTGTGGTAGCGT 60.143 41.667 0.00 0.00 0.00 5.07
307 308 4.142708 TGCAATCAAATAACTGTGGTAGCG 60.143 41.667 0.00 0.00 0.00 4.26
308 309 5.309323 TGCAATCAAATAACTGTGGTAGC 57.691 39.130 0.00 0.00 0.00 3.58
309 310 6.183360 ACGATGCAATCAAATAACTGTGGTAG 60.183 38.462 0.00 0.00 45.97 3.18
310 311 5.645929 ACGATGCAATCAAATAACTGTGGTA 59.354 36.000 0.00 0.00 45.97 3.25
311 312 4.458989 ACGATGCAATCAAATAACTGTGGT 59.541 37.500 0.00 0.00 45.97 4.16
312 313 4.985413 ACGATGCAATCAAATAACTGTGG 58.015 39.130 0.00 0.00 45.97 4.17
313 314 6.085573 TGAACGATGCAATCAAATAACTGTG 58.914 36.000 0.00 0.00 45.97 3.66
314 315 6.149308 TCTGAACGATGCAATCAAATAACTGT 59.851 34.615 0.00 0.00 45.97 3.55
315 316 6.545508 TCTGAACGATGCAATCAAATAACTG 58.454 36.000 0.00 0.00 45.97 3.16
316 317 6.595326 TCTCTGAACGATGCAATCAAATAACT 59.405 34.615 0.00 0.00 45.97 2.24
317 318 6.775088 TCTCTGAACGATGCAATCAAATAAC 58.225 36.000 0.00 0.00 45.97 1.89
318 319 6.983474 TCTCTGAACGATGCAATCAAATAA 57.017 33.333 0.00 0.00 45.97 1.40
319 320 6.371271 TGTTCTCTGAACGATGCAATCAAATA 59.629 34.615 0.00 0.00 45.97 1.40
320 321 5.181811 TGTTCTCTGAACGATGCAATCAAAT 59.818 36.000 0.00 0.00 45.97 2.32
321 322 4.514816 TGTTCTCTGAACGATGCAATCAAA 59.485 37.500 0.00 0.00 45.97 2.69
322 323 4.064388 TGTTCTCTGAACGATGCAATCAA 58.936 39.130 0.00 0.00 45.97 2.57
323 324 3.663025 TGTTCTCTGAACGATGCAATCA 58.337 40.909 0.00 0.00 45.97 2.57
324 325 4.549680 CGATGTTCTCTGAACGATGCAATC 60.550 45.833 0.00 2.41 40.89 2.67
325 326 3.308053 CGATGTTCTCTGAACGATGCAAT 59.692 43.478 0.00 0.00 0.00 3.56
326 327 2.667969 CGATGTTCTCTGAACGATGCAA 59.332 45.455 0.00 0.00 0.00 4.08
327 328 2.262211 CGATGTTCTCTGAACGATGCA 58.738 47.619 0.00 0.00 0.00 3.96
328 329 2.263077 ACGATGTTCTCTGAACGATGC 58.737 47.619 6.05 0.00 0.00 3.91
329 330 3.675225 ACAACGATGTTCTCTGAACGATG 59.325 43.478 0.00 0.00 35.91 3.84
330 331 3.914312 ACAACGATGTTCTCTGAACGAT 58.086 40.909 0.00 1.89 35.91 3.73
331 332 3.364889 ACAACGATGTTCTCTGAACGA 57.635 42.857 0.00 0.00 35.91 3.85
342 343 5.992729 AGCGTGTTTATAAAACAACGATGT 58.007 33.333 23.12 0.00 43.14 3.06
343 344 6.304126 AGAGCGTGTTTATAAAACAACGATG 58.696 36.000 23.12 0.00 31.40 3.84
344 345 6.476243 AGAGCGTGTTTATAAAACAACGAT 57.524 33.333 23.12 19.56 31.40 3.73
345 346 5.910637 AGAGCGTGTTTATAAAACAACGA 57.089 34.783 23.12 0.00 31.40 3.85
346 347 6.011277 GGTAGAGCGTGTTTATAAAACAACG 58.989 40.000 18.11 18.11 31.20 4.10
347 348 6.309436 GGGTAGAGCGTGTTTATAAAACAAC 58.691 40.000 6.78 3.40 31.20 3.32
348 349 5.412286 GGGGTAGAGCGTGTTTATAAAACAA 59.588 40.000 6.78 0.00 31.20 2.83
349 350 4.937015 GGGGTAGAGCGTGTTTATAAAACA 59.063 41.667 0.00 1.21 0.00 2.83
350 351 5.181009 AGGGGTAGAGCGTGTTTATAAAAC 58.819 41.667 0.00 0.73 0.00 2.43
351 352 5.046448 TGAGGGGTAGAGCGTGTTTATAAAA 60.046 40.000 0.00 0.00 0.00 1.52
352 353 4.467082 TGAGGGGTAGAGCGTGTTTATAAA 59.533 41.667 0.00 0.00 0.00 1.40
353 354 4.025360 TGAGGGGTAGAGCGTGTTTATAA 58.975 43.478 0.00 0.00 0.00 0.98
354 355 3.634504 TGAGGGGTAGAGCGTGTTTATA 58.365 45.455 0.00 0.00 0.00 0.98
355 356 2.463752 TGAGGGGTAGAGCGTGTTTAT 58.536 47.619 0.00 0.00 0.00 1.40
356 357 1.927487 TGAGGGGTAGAGCGTGTTTA 58.073 50.000 0.00 0.00 0.00 2.01
357 358 1.053424 TTGAGGGGTAGAGCGTGTTT 58.947 50.000 0.00 0.00 0.00 2.83
358 359 1.002087 CTTTGAGGGGTAGAGCGTGTT 59.998 52.381 0.00 0.00 0.00 3.32
359 360 0.608640 CTTTGAGGGGTAGAGCGTGT 59.391 55.000 0.00 0.00 0.00 4.49
360 361 0.895530 TCTTTGAGGGGTAGAGCGTG 59.104 55.000 0.00 0.00 0.00 5.34
361 362 1.640917 TTCTTTGAGGGGTAGAGCGT 58.359 50.000 0.00 0.00 0.00 5.07
362 363 2.762535 TTTCTTTGAGGGGTAGAGCG 57.237 50.000 0.00 0.00 0.00 5.03
363 364 3.956744 ACATTTCTTTGAGGGGTAGAGC 58.043 45.455 0.00 0.00 0.00 4.09
364 365 6.480320 CGAATACATTTCTTTGAGGGGTAGAG 59.520 42.308 0.00 0.00 0.00 2.43
365 366 6.346096 CGAATACATTTCTTTGAGGGGTAGA 58.654 40.000 0.00 0.00 0.00 2.59
366 367 5.527582 CCGAATACATTTCTTTGAGGGGTAG 59.472 44.000 0.00 0.00 0.00 3.18
367 368 5.433526 CCGAATACATTTCTTTGAGGGGTA 58.566 41.667 0.00 0.00 0.00 3.69
368 369 4.270008 CCGAATACATTTCTTTGAGGGGT 58.730 43.478 0.00 0.00 0.00 4.95
369 370 3.066760 GCCGAATACATTTCTTTGAGGGG 59.933 47.826 0.00 0.00 0.00 4.79
370 371 3.242739 CGCCGAATACATTTCTTTGAGGG 60.243 47.826 0.00 0.00 0.00 4.30
371 372 3.788797 GCGCCGAATACATTTCTTTGAGG 60.789 47.826 0.00 0.00 0.00 3.86
372 373 3.181511 TGCGCCGAATACATTTCTTTGAG 60.182 43.478 4.18 0.00 0.00 3.02
373 374 2.744741 TGCGCCGAATACATTTCTTTGA 59.255 40.909 4.18 0.00 0.00 2.69
374 375 2.845967 GTGCGCCGAATACATTTCTTTG 59.154 45.455 4.18 0.00 0.00 2.77
375 376 2.747446 AGTGCGCCGAATACATTTCTTT 59.253 40.909 4.18 0.00 0.00 2.52
376 377 2.095853 CAGTGCGCCGAATACATTTCTT 59.904 45.455 4.18 0.00 0.00 2.52
377 378 1.665679 CAGTGCGCCGAATACATTTCT 59.334 47.619 4.18 0.00 0.00 2.52
378 379 1.268032 CCAGTGCGCCGAATACATTTC 60.268 52.381 4.18 0.00 0.00 2.17
379 380 0.732571 CCAGTGCGCCGAATACATTT 59.267 50.000 4.18 0.00 0.00 2.32
380 381 0.107897 TCCAGTGCGCCGAATACATT 60.108 50.000 4.18 0.00 0.00 2.71
381 382 0.530650 CTCCAGTGCGCCGAATACAT 60.531 55.000 4.18 0.00 0.00 2.29
382 383 1.153647 CTCCAGTGCGCCGAATACA 60.154 57.895 4.18 0.00 0.00 2.29
383 384 2.526120 GCTCCAGTGCGCCGAATAC 61.526 63.158 4.18 0.00 0.00 1.89
384 385 2.202878 GCTCCAGTGCGCCGAATA 60.203 61.111 4.18 0.00 0.00 1.75
385 386 2.238847 TAAGCTCCAGTGCGCCGAAT 62.239 55.000 4.18 0.00 38.13 3.34
386 387 2.938086 TAAGCTCCAGTGCGCCGAA 61.938 57.895 4.18 0.00 38.13 4.30
387 388 3.378602 TAAGCTCCAGTGCGCCGA 61.379 61.111 4.18 0.00 38.13 5.54
388 389 3.188786 GTAAGCTCCAGTGCGCCG 61.189 66.667 4.18 0.00 38.13 6.46
389 390 3.188786 CGTAAGCTCCAGTGCGCC 61.189 66.667 4.18 0.00 38.13 6.53
390 391 3.188786 CCGTAAGCTCCAGTGCGC 61.189 66.667 0.00 0.00 38.13 6.09
391 392 1.374252 AACCGTAAGCTCCAGTGCG 60.374 57.895 0.00 0.00 38.13 5.34
392 393 1.912371 GCAACCGTAAGCTCCAGTGC 61.912 60.000 0.00 0.00 0.00 4.40
393 394 0.602638 TGCAACCGTAAGCTCCAGTG 60.603 55.000 0.00 0.00 0.00 3.66
394 395 0.602905 GTGCAACCGTAAGCTCCAGT 60.603 55.000 0.00 0.00 0.00 4.00
395 396 1.626654 CGTGCAACCGTAAGCTCCAG 61.627 60.000 0.00 0.00 0.00 3.86
396 397 1.666553 CGTGCAACCGTAAGCTCCA 60.667 57.895 0.00 0.00 0.00 3.86
397 398 3.023591 GCGTGCAACCGTAAGCTCC 62.024 63.158 0.00 0.00 29.99 4.70
398 399 1.635663 ATGCGTGCAACCGTAAGCTC 61.636 55.000 0.00 0.00 33.60 4.09
399 400 1.671054 ATGCGTGCAACCGTAAGCT 60.671 52.632 0.00 0.00 33.60 3.74
400 401 1.511887 CATGCGTGCAACCGTAAGC 60.512 57.895 0.00 0.00 33.07 3.09
401 402 1.134487 CCATGCGTGCAACCGTAAG 59.866 57.895 0.00 0.00 0.00 2.34
402 403 1.167155 AACCATGCGTGCAACCGTAA 61.167 50.000 0.00 0.00 0.00 3.18
403 404 1.570347 GAACCATGCGTGCAACCGTA 61.570 55.000 0.00 0.00 0.00 4.02
404 405 2.903547 GAACCATGCGTGCAACCGT 61.904 57.895 0.00 0.00 0.00 4.83
405 406 2.126888 GAACCATGCGTGCAACCG 60.127 61.111 0.00 0.00 0.00 4.44
406 407 1.210155 GAGAACCATGCGTGCAACC 59.790 57.895 0.00 0.00 0.00 3.77
407 408 0.310543 TTGAGAACCATGCGTGCAAC 59.689 50.000 0.00 0.00 0.00 4.17
408 409 0.592637 CTTGAGAACCATGCGTGCAA 59.407 50.000 0.00 0.00 0.00 4.08
409 410 1.855213 GCTTGAGAACCATGCGTGCA 61.855 55.000 0.00 0.00 36.43 4.57
410 411 1.154150 GCTTGAGAACCATGCGTGC 60.154 57.895 0.00 0.00 36.43 5.34
411 412 0.806868 ATGCTTGAGAACCATGCGTG 59.193 50.000 0.00 0.00 45.72 5.34
412 413 0.806868 CATGCTTGAGAACCATGCGT 59.193 50.000 0.00 0.00 45.72 5.24
413 414 1.089112 TCATGCTTGAGAACCATGCG 58.911 50.000 0.00 0.00 45.72 4.73
414 415 4.321008 CCATATCATGCTTGAGAACCATGC 60.321 45.833 8.40 0.00 43.79 4.06
415 416 5.067954 TCCATATCATGCTTGAGAACCATG 58.932 41.667 8.40 6.29 38.10 3.66
416 417 5.314718 TCCATATCATGCTTGAGAACCAT 57.685 39.130 8.40 0.00 34.73 3.55
417 418 4.776435 TCCATATCATGCTTGAGAACCA 57.224 40.909 8.40 0.00 34.73 3.67
418 419 5.238214 GTCTTCCATATCATGCTTGAGAACC 59.762 44.000 8.40 0.00 34.73 3.62
419 420 5.238214 GGTCTTCCATATCATGCTTGAGAAC 59.762 44.000 8.40 0.00 34.73 3.01
420 421 5.104402 TGGTCTTCCATATCATGCTTGAGAA 60.104 40.000 8.40 5.38 39.03 2.87
421 422 4.409901 TGGTCTTCCATATCATGCTTGAGA 59.590 41.667 8.40 3.85 39.03 3.27
422 423 4.711399 TGGTCTTCCATATCATGCTTGAG 58.289 43.478 8.40 0.00 39.03 3.02
460 461 7.353525 TGAGGGTTGATGGTAATGTATTGAAT 58.646 34.615 0.00 0.00 0.00 2.57
507 508 2.877360 TTCGTATGTCGGCACTCGGC 62.877 60.000 13.96 0.00 44.94 5.54
508 509 0.866061 CTTCGTATGTCGGCACTCGG 60.866 60.000 13.96 0.00 40.32 4.63
509 510 0.179171 ACTTCGTATGTCGGCACTCG 60.179 55.000 8.96 8.96 40.32 4.18
510 511 1.918609 GAACTTCGTATGTCGGCACTC 59.081 52.381 0.00 0.00 40.32 3.51
511 512 1.271379 TGAACTTCGTATGTCGGCACT 59.729 47.619 0.00 0.00 40.32 4.40
512 513 1.705256 TGAACTTCGTATGTCGGCAC 58.295 50.000 0.00 0.00 40.32 5.01
532 533 4.570930 TGTTGATGTGTGGCGTAATTCTA 58.429 39.130 0.00 0.00 0.00 2.10
580 581 2.813779 GCTTAGTGCATTTCTCGTGG 57.186 50.000 0.00 0.00 42.31 4.94
591 592 2.003301 GTAGACCTTGCTGCTTAGTGC 58.997 52.381 0.00 0.00 43.25 4.40
598 599 3.053831 TGGTTAAGTAGACCTTGCTGC 57.946 47.619 0.00 0.00 38.04 5.25
606 607 5.930569 AGGTCGTTGATTTGGTTAAGTAGAC 59.069 40.000 0.00 0.00 0.00 2.59
608 609 5.929992 TGAGGTCGTTGATTTGGTTAAGTAG 59.070 40.000 0.00 0.00 0.00 2.57
612 613 4.024725 CGTTGAGGTCGTTGATTTGGTTAA 60.025 41.667 0.00 0.00 0.00 2.01
615 616 1.871039 CGTTGAGGTCGTTGATTTGGT 59.129 47.619 0.00 0.00 0.00 3.67
616 617 1.871039 ACGTTGAGGTCGTTGATTTGG 59.129 47.619 0.00 0.00 38.38 3.28
617 618 2.542178 TCACGTTGAGGTCGTTGATTTG 59.458 45.455 0.00 0.00 39.55 2.32
618 619 2.828877 TCACGTTGAGGTCGTTGATTT 58.171 42.857 0.00 0.00 39.55 2.17
619 620 2.519377 TCACGTTGAGGTCGTTGATT 57.481 45.000 0.00 0.00 39.55 2.57
626 647 2.795470 GAGACAAGTTCACGTTGAGGTC 59.205 50.000 0.00 0.00 0.00 3.85
627 648 2.483188 GGAGACAAGTTCACGTTGAGGT 60.483 50.000 0.00 0.00 0.00 3.85
676 716 1.296056 GCCGCGTGAATGTAACTGGT 61.296 55.000 4.92 0.00 0.00 4.00
681 721 0.800012 GGAAAGCCGCGTGAATGTAA 59.200 50.000 4.92 0.00 0.00 2.41
951 991 3.798878 CACATATATAATCCGCTCGCCTG 59.201 47.826 0.00 0.00 0.00 4.85
995 1035 1.003233 GGAGCAACCACCACTCCTC 60.003 63.158 1.02 0.00 45.44 3.71
996 1036 3.161557 GGAGCAACCACCACTCCT 58.838 61.111 1.02 0.00 45.44 3.69
1038 1081 1.526887 GTGCCCGGATCCAGATTGA 59.473 57.895 13.41 0.00 0.00 2.57
1079 1122 0.107410 TCTCCAGGCTCTCGAGTCTC 60.107 60.000 13.13 3.07 42.34 3.36
1080 1123 0.107214 CTCTCCAGGCTCTCGAGTCT 60.107 60.000 13.13 6.13 45.70 3.24
1081 1124 1.724582 GCTCTCCAGGCTCTCGAGTC 61.725 65.000 13.13 5.63 0.00 3.36
1082 1125 1.752694 GCTCTCCAGGCTCTCGAGT 60.753 63.158 13.13 0.00 0.00 4.18
1083 1126 2.489275 GGCTCTCCAGGCTCTCGAG 61.489 68.421 5.93 5.93 42.14 4.04
1084 1127 2.441164 GGCTCTCCAGGCTCTCGA 60.441 66.667 0.00 0.00 42.14 4.04
1085 1128 3.898509 CGGCTCTCCAGGCTCTCG 61.899 72.222 0.00 0.00 43.28 4.04
1187 1230 5.399301 CCAAAATCTTAGCACACGAAAACAG 59.601 40.000 0.00 0.00 0.00 3.16
1195 1238 5.505286 CGATGATCCAAAATCTTAGCACAC 58.495 41.667 0.00 0.00 0.00 3.82
1234 1277 0.618458 AGGCGGTAAATCAGCAGGAA 59.382 50.000 0.00 0.00 38.93 3.36
1240 1283 1.949525 CCAATCCAGGCGGTAAATCAG 59.050 52.381 0.00 0.00 0.00 2.90
1344 1389 2.098117 CCACAGAAAATCCGCTCCAATC 59.902 50.000 0.00 0.00 0.00 2.67
1425 1470 5.514274 ACAGACACAATGGGTAACTTTTG 57.486 39.130 0.00 0.00 35.45 2.44
1426 1471 6.153680 TGAAACAGACACAATGGGTAACTTTT 59.846 34.615 0.00 0.00 0.00 2.27
1528 1574 8.284693 AGATCAAAAATTTCGGCAAAATCAAAG 58.715 29.630 0.00 0.00 36.54 2.77
2099 2146 7.881775 AACACAAGAACTTGGTAGATCTTTT 57.118 32.000 17.05 0.00 40.37 2.27
2237 2380 5.991328 TCACAAAGTGAACTTCTTGCTAG 57.009 39.130 0.00 0.00 39.78 3.42
2238 2381 5.880332 ACTTCACAAAGTGAACTTCTTGCTA 59.120 36.000 8.39 0.00 45.88 3.49
2240 2383 4.986622 ACTTCACAAAGTGAACTTCTTGC 58.013 39.130 8.39 0.00 45.88 4.01
2243 2386 7.396540 AATTGACTTCACAAAGTGAACTTCT 57.603 32.000 8.39 0.00 45.88 2.85
2244 2387 8.466086 AAAATTGACTTCACAAAGTGAACTTC 57.534 30.769 8.39 8.56 45.88 3.01
2245 2388 8.711457 CAAAAATTGACTTCACAAAGTGAACTT 58.289 29.630 8.39 0.00 45.88 2.66
2246 2389 8.087750 TCAAAAATTGACTTCACAAAGTGAACT 58.912 29.630 8.39 0.71 45.80 3.01
2247 2390 8.238481 TCAAAAATTGACTTCACAAAGTGAAC 57.762 30.769 8.39 1.76 45.80 3.18
2426 2569 4.608948 AGCATATGGCCAGTAGTAGTTC 57.391 45.455 13.05 0.00 46.50 3.01
2439 2582 6.643770 GCTCCAAACATGAAAATAGCATATGG 59.356 38.462 4.56 0.00 0.00 2.74
2493 2636 8.461249 TCAAGCCCAAAGTACTAGTACTATAG 57.539 38.462 30.89 22.72 44.96 1.31
2494 2637 8.827832 TTCAAGCCCAAAGTACTAGTACTATA 57.172 34.615 30.89 9.91 44.96 1.31
2495 2638 7.618512 TCTTCAAGCCCAAAGTACTAGTACTAT 59.381 37.037 30.89 19.60 44.96 2.12
2496 2639 6.950041 TCTTCAAGCCCAAAGTACTAGTACTA 59.050 38.462 30.89 12.96 44.96 1.82
2498 2641 6.034161 TCTTCAAGCCCAAAGTACTAGTAC 57.966 41.667 23.03 23.03 36.35 2.73
2499 2642 6.869206 ATCTTCAAGCCCAAAGTACTAGTA 57.131 37.500 0.00 0.00 0.00 1.82
2500 2643 5.763876 ATCTTCAAGCCCAAAGTACTAGT 57.236 39.130 0.00 0.00 0.00 2.57
2571 2839 9.511144 AAAGAGTTTTTAGTGATAAAACAACGG 57.489 29.630 12.14 0.00 44.15 4.44
2607 2875 3.116746 TCCATGCCTCTAGGGTTATCTGA 60.117 47.826 0.00 0.00 37.43 3.27
2831 3102 6.801539 AAACGTGATGCTGAAAGAAGAATA 57.198 33.333 0.00 0.00 34.07 1.75
2869 3140 5.338300 GGGGTATTTGATGCCTTGTTTGATT 60.338 40.000 0.00 0.00 35.15 2.57
2890 3161 0.033366 CCTTGTTTTTCTTGCGGGGG 59.967 55.000 0.00 0.00 0.00 5.40
2980 3251 6.919662 CAGTGCTGTTGTTGAATTGACTAAAT 59.080 34.615 0.00 0.00 0.00 1.40
2981 3252 6.127758 ACAGTGCTGTTGTTGAATTGACTAAA 60.128 34.615 0.00 0.00 41.83 1.85
2997 3268 6.875948 TCATTGTAACAAATACAGTGCTGT 57.124 33.333 9.90 9.90 46.35 4.40
3048 3319 4.157656 GGAACATGGTAAGCAATTGCAGTA 59.842 41.667 30.89 19.41 45.16 2.74
3070 3341 6.414732 TGACTGGAGTAAATGGTAAATCAGG 58.585 40.000 0.00 0.00 0.00 3.86
3078 3349 3.910627 AGGAGTTGACTGGAGTAAATGGT 59.089 43.478 0.00 0.00 0.00 3.55
3094 3365 7.175104 TCTAGAACCAATAAAATGCAGGAGTT 58.825 34.615 0.00 0.00 0.00 3.01
3123 3394 6.165577 GGCTTTATCATGTTCAAACACCAAT 58.834 36.000 0.00 0.00 42.51 3.16
3125 3396 4.586421 TGGCTTTATCATGTTCAAACACCA 59.414 37.500 0.00 0.00 42.51 4.17
3157 3436 6.295180 TTGATAATCAAAATGGCACAAGCAGA 60.295 34.615 0.00 0.00 35.84 4.26
3181 3460 4.098654 TCCACACAATCCAAAACAATCGTT 59.901 37.500 0.00 0.00 36.73 3.85
3190 3469 3.593442 AGACCTTCCACACAATCCAAA 57.407 42.857 0.00 0.00 0.00 3.28
3234 3513 7.979444 ACATTGCTAGCAACTAAAACTCTTA 57.021 32.000 31.51 5.79 38.88 2.10
3344 3623 3.680620 TTTCCATCTGCCGAGCGGG 62.681 63.158 11.30 0.00 35.34 6.13
3351 3630 6.515272 TCTACAAAATTCTTTCCATCTGCC 57.485 37.500 0.00 0.00 0.00 4.85
3375 3654 0.962855 GGAGGGAAGAAAGCCACTGC 60.963 60.000 0.00 0.00 37.95 4.40
3628 3912 5.411781 AGAATGAATGTGTCTTCTACGACC 58.588 41.667 0.00 0.00 32.97 4.79
3696 3980 3.486383 AGTGGGACAAAATGAACGATGT 58.514 40.909 0.00 0.00 44.16 3.06
3750 4034 5.468746 ACGGCAAATGACACCATATATACAC 59.531 40.000 0.00 0.00 31.59 2.90
3870 4154 2.966050 TCCACAAAAACGCAAAAAGCT 58.034 38.095 0.00 0.00 42.61 3.74
3871 4155 3.120511 TGTTCCACAAAAACGCAAAAAGC 60.121 39.130 0.00 0.00 40.87 3.51
3872 4156 4.653806 TGTTCCACAAAAACGCAAAAAG 57.346 36.364 0.00 0.00 0.00 2.27
3873 4157 4.511826 ACTTGTTCCACAAAAACGCAAAAA 59.488 33.333 0.00 0.00 37.69 1.94
3879 4165 4.326009 CCAAGAACTTGTTCCACAAAAACG 59.674 41.667 12.54 0.00 37.69 3.60
3894 4180 4.279420 GGTCAGAAAATTGAGCCAAGAACT 59.721 41.667 0.00 0.00 39.14 3.01
3944 4230 2.076100 CAGCAGCGACAGAAATAACCA 58.924 47.619 0.00 0.00 0.00 3.67
3967 4253 6.469595 GCTCACTAGTAGTAAGAATCAACACG 59.530 42.308 4.50 0.00 0.00 4.49
3968 4254 7.313646 TGCTCACTAGTAGTAAGAATCAACAC 58.686 38.462 4.50 0.00 0.00 3.32
3970 4256 9.453325 GTATGCTCACTAGTAGTAAGAATCAAC 57.547 37.037 4.50 0.00 0.00 3.18
3973 4259 8.293867 CAGGTATGCTCACTAGTAGTAAGAATC 58.706 40.741 4.50 0.00 0.00 2.52
3974 4260 8.172352 CAGGTATGCTCACTAGTAGTAAGAAT 57.828 38.462 4.50 1.78 0.00 2.40
4005 4436 0.539669 TTCTCTCCTCGGACAGTGCA 60.540 55.000 0.00 0.00 0.00 4.57
4010 4441 2.046864 CGCCTTCTCTCCTCGGACA 61.047 63.158 0.00 0.00 0.00 4.02
4017 4448 0.176680 TGCAGAATCGCCTTCTCTCC 59.823 55.000 0.00 0.00 42.48 3.71
4019 4450 2.093288 TCATTGCAGAATCGCCTTCTCT 60.093 45.455 0.00 0.00 42.48 3.10
4087 4518 1.539827 ACATTTGCAAGGCCGTACTTC 59.460 47.619 0.00 0.00 0.00 3.01
4242 4692 1.228894 TCCTCACGCAGAAGTCCCT 60.229 57.895 0.00 0.00 0.00 4.20
4253 4703 1.129624 CTCGACTTCTGTCTCCTCACG 59.870 57.143 0.00 0.00 40.86 4.35
4305 4755 6.976934 AGAAAAAGGAATTGGCAGTTTCTA 57.023 33.333 3.72 0.00 33.33 2.10
4307 4757 6.925610 AAAGAAAAAGGAATTGGCAGTTTC 57.074 33.333 0.00 0.00 0.00 2.78
4308 4758 6.883756 TCAAAAGAAAAAGGAATTGGCAGTTT 59.116 30.769 0.00 0.00 0.00 2.66
4355 4826 4.583871 CTCCTGCAAATCTTTGTCTACCT 58.416 43.478 4.71 0.00 40.24 3.08
4378 4849 1.730501 CCATGTGTGGCTCACTACAG 58.269 55.000 19.21 7.51 46.27 2.74
4397 4868 1.602771 GTCCTTAGAGGTGGGGCAC 59.397 63.158 0.00 0.00 36.53 5.01
4428 4899 1.383523 AAGGAGGCTCGCAATTTAGC 58.616 50.000 8.69 0.00 38.03 3.09
4455 4926 2.105134 TGTGAACGGAGTGGGTGTAAAT 59.895 45.455 0.00 0.00 45.00 1.40
4456 4927 1.485480 TGTGAACGGAGTGGGTGTAAA 59.515 47.619 0.00 0.00 45.00 2.01
4457 4928 1.069513 CTGTGAACGGAGTGGGTGTAA 59.930 52.381 0.00 0.00 45.00 2.41
4458 4929 0.677288 CTGTGAACGGAGTGGGTGTA 59.323 55.000 0.00 0.00 45.00 2.90
4459 4930 1.445942 CTGTGAACGGAGTGGGTGT 59.554 57.895 0.00 0.00 45.00 4.16
4460 4931 1.961277 GCTGTGAACGGAGTGGGTG 60.961 63.158 0.00 0.00 45.00 4.61
4461 4932 2.426023 GCTGTGAACGGAGTGGGT 59.574 61.111 0.00 0.00 45.00 4.51
4462 4933 2.425592 TGCTGTGAACGGAGTGGG 59.574 61.111 0.00 0.00 45.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.